Diff of the two buildlogs: -- --- b1/build.log 2024-01-08 04:13:29.258788081 +0000 +++ b2/build.log 2024-01-08 04:18:57.781350791 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jan 7 16:11:01 -12 2024 -I: pbuilder-time-stamp: 1704687061 +I: Current time: Mon Feb 10 00:36:32 +14 2025 +I: pbuilder-time-stamp: 1739097392 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -35,49 +35,81 @@ dpkg-source: info: applying trim-file-prefix.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2088898/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1003555/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 9 10:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1003555/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1003555/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='e9198eea8b6b4da29274196623c7d03b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2088898' - PS1='# ' - PS2='> ' + INVOCATION_ID=42fed1fec082481fb6b24352a42a79bd + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1003555 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.C6x6Hrik/pbuilderrc_3Pax --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.C6x6Hrik/b1 --logfile b1/build.log htslib_1.16+ds-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.104:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.C6x6Hrik/pbuilderrc_jTTw --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.C6x6Hrik/b2 --logfile b2/build.log htslib_1.16+ds-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.104:3128 I: uname -a - Linux codethink04-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Apr 23 2023 bash @@ -135,15 +167,15 @@ -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 68392 Jul 28 23:46 run-parts + -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash + lrwxrwxrwx 1 root root 9 Feb 9 10:36 sh -> /bin/bash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Mar 23 2023 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Apr 6 2023 tar - -rwxr-xr-x 1 root root 67904 Jul 28 23:46 tempfile + -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 23 2023 ulockmgr_server @@ -163,7 +195,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/2088898/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/1003555/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -261,7 +293,7 @@ Get: 46 http://deb.debian.org/debian bookworm/main arm64 liblzma-dev arm64 5.4.1-0.2 [255 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libssl-dev arm64 3.0.11-1~deb12u2 [2302 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] -Fetched 26.6 MB in 0s (99.4 MB/s) +Fetched 26.6 MB in 1s (52.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18171 files and directories currently installed.) @@ -468,7 +500,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/htslib-1.16+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htslib_1.16+ds-3_source.changes +I: user script /srv/workspace/pbuilder/1003555/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bookworm +I: user script /srv/workspace/pbuilder/1003555/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/htslib-1.16+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../htslib_1.16+ds-3_source.changes dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.16+ds-3 dpkg-buildpackage: info: source distribution unstable @@ -700,8 +736,6 @@ gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c -gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_gcs.pico hfile_gcs.c -gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3.pico hfile_s3.c hfile_libcurl.c: In function 'libcurl_open': hfile_libcurl.c:1335:9: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, @@ -710,6 +744,8 @@ /usr/include/aarch64-linux-gnu/curl/curl.h:2858:3: note: declared here 2858 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_gcs.pico hfile_gcs.c +gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3.pico hfile_s3.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3_write.pico hfile_s3_write.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hts_endian.o test/hts_endian.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c @@ -980,203 +1016,203 @@ bgzip -b -I 4 threads: .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -b -m 14 -x /tmp/zSlmzuu2uK/index.bam.csi /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/zSlmzuu2uK/index.bam + /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -b -m 14 -x /tmp/tMp1A4dO9q/index.bam.csi /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/tMp1A4dO9q/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/zSlmzuu2uK/index.bam + /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/tMp1A4dO9q/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -b -m 0 -x /tmp/zSlmzuu2uK/index.bam.bai /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/zSlmzuu2uK/index.bam + /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -b -m 0 -x /tmp/tMp1A4dO9q/index.bam.bai /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/tMp1A4dO9q/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -b /tmp/zSlmzuu2uK/index.bam + /build/reproducible-path/htslib-1.16+ds/test/test_index -b /tmp/tMp1A4dO9q/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -z -m 14 -x /tmp/zSlmzuu2uK/index.sam.gz.csi /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -z -m 14 -x /tmp/tMp1A4dO9q/index.sam.gz.csi /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -z -m 0 -x /tmp/zSlmzuu2uK/index.sam.gz.bai /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -z -m 0 -x /tmp/tMp1A4dO9q/index.sam.gz.bai /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -b /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_index -b /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -z -m 14 -x /tmp/zSlmzuu2uK/index.sam.gz.csi /build/reproducible-path/htslib-1.16+ds/test/index_dos.sam > /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -z -m 14 -x /tmp/tMp1A4dO9q/index.sam.gz.csi /build/reproducible-path/htslib-1.16+ds/test/index_dos.sam > /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -z -m 0 -x /tmp/zSlmzuu2uK/index.sam.gz.bai /build/reproducible-path/htslib-1.16+ds/test/index_dos.sam > /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -z -m 0 -x /tmp/tMp1A4dO9q/index.sam.gz.bai /build/reproducible-path/htslib-1.16+ds/test/index_dos.sam > /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -b /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_index -b /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -C -x /tmp/zSlmzuu2uK/index.cram.crai /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/zSlmzuu2uK/index.cram + /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -C -x /tmp/tMp1A4dO9q/index.cram.crai /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/tMp1A4dO9q/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index /tmp/zSlmzuu2uK/index.cram + /build/reproducible-path/htslib-1.16+ds/test/test_index /tmp/tMp1A4dO9q/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -b -m 14 -x /tmp/zSlmzuu2uK/index.bcf.csi /build/reproducible-path/htslib-1.16+ds/test/index.vcf > /tmp/zSlmzuu2uK/index.bcf + /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -b -m 14 -x /tmp/tMp1A4dO9q/index.bcf.csi /build/reproducible-path/htslib-1.16+ds/test/index.vcf > /tmp/tMp1A4dO9q/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/zSlmzuu2uK/index.bcf + /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/tMp1A4dO9q/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -z -m 14 -x /tmp/zSlmzuu2uK/index.vcf.gz.csi /build/reproducible-path/htslib-1.16+ds/test/index.vcf > /tmp/zSlmzuu2uK/index.vcf.gz + /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -z -m 14 -x /tmp/tMp1A4dO9q/index.vcf.gz.csi /build/reproducible-path/htslib-1.16+ds/test/index.vcf > /tmp/tMp1A4dO9q/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/zSlmzuu2uK/index.vcf.gz + /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/tMp1A4dO9q/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -z -m 0 -x /tmp/zSlmzuu2uK/index.vcf.gz.tbi /build/reproducible-path/htslib-1.16+ds/test/index.vcf > /tmp/zSlmzuu2uK/index.vcf.gz + /build/reproducible-path/htslib-1.16+ds/test/test_view -l 0 -z -m 0 -x /tmp/tMp1A4dO9q/index.vcf.gz.tbi /build/reproducible-path/htslib-1.16+ds/test/index.vcf > /tmp/tMp1A4dO9q/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -t /tmp/zSlmzuu2uK/index.vcf.gz + /build/reproducible-path/htslib-1.16+ds/test/test_index -t /tmp/tMp1A4dO9q/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/tabix /tmp/zSlmzuu2uK/index.vcf.gz##idx##/tmp/zSlmzuu2uK/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.16+ds/tabix /tmp/tMp1A4dO9q/index.vcf.gz##idx##/tmp/tMp1A4dO9q/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/zSlmzuu2uK/index2.bam 1:1000000-1000000 + /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/tMp1A4dO9q/index2.bam 1:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/zSlmzuu2uK/index2.bam 1:2000000-2000000 + /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/tMp1A4dO9q/index2.bam 1:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/zSlmzuu2uK/index2.bam 2:1000000-1000000 + /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/tMp1A4dO9q/index2.bam 2:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/zSlmzuu2uK/index2.bam 2:2000000-2000000 + /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/tMp1A4dO9q/index2.bam 2:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/zSlmzuu2uK/index.bam.csi /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/zSlmzuu2uK/index.bam + /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/tMp1A4dO9q/index.bam.csi /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/tMp1A4dO9q/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/zSlmzuu2uK/index.bam + /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/tMp1A4dO9q/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -b -m 0 -x /tmp/zSlmzuu2uK/index.bam.bai /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/zSlmzuu2uK/index.bam + /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -b -m 0 -x /tmp/tMp1A4dO9q/index.bam.bai /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/tMp1A4dO9q/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -b /tmp/zSlmzuu2uK/index.bam + /build/reproducible-path/htslib-1.16+ds/test/test_index -b /tmp/tMp1A4dO9q/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/zSlmzuu2uK/index.sam.gz.csi /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/tMp1A4dO9q/index.sam.gz.csi /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/zSlmzuu2uK/index.sam.gz.bai /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/tMp1A4dO9q/index.sam.gz.bai /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -b /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_index -b /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/zSlmzuu2uK/index.sam.gz.csi /build/reproducible-path/htslib-1.16+ds/test/index_dos.sam > /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/tMp1A4dO9q/index.sam.gz.csi /build/reproducible-path/htslib-1.16+ds/test/index_dos.sam > /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/zSlmzuu2uK/index.sam.gz.bai /build/reproducible-path/htslib-1.16+ds/test/index_dos.sam > /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/tMp1A4dO9q/index.sam.gz.bai /build/reproducible-path/htslib-1.16+ds/test/index_dos.sam > /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -b /tmp/zSlmzuu2uK/index.sam.gz + /build/reproducible-path/htslib-1.16+ds/test/test_index -b /tmp/tMp1A4dO9q/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -C -x /tmp/zSlmzuu2uK/index.cram.crai /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/zSlmzuu2uK/index.cram + /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -C -x /tmp/tMp1A4dO9q/index.cram.crai /build/reproducible-path/htslib-1.16+ds/test/index.sam > /tmp/tMp1A4dO9q/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index /tmp/zSlmzuu2uK/index.cram + /build/reproducible-path/htslib-1.16+ds/test/test_index /tmp/tMp1A4dO9q/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/zSlmzuu2uK/index.bcf.csi /build/reproducible-path/htslib-1.16+ds/test/index.vcf > /tmp/zSlmzuu2uK/index.bcf + /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/tMp1A4dO9q/index.bcf.csi /build/reproducible-path/htslib-1.16+ds/test/index.vcf > /tmp/tMp1A4dO9q/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/zSlmzuu2uK/index.bcf + /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/tMp1A4dO9q/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/zSlmzuu2uK/index.vcf.gz.csi /build/reproducible-path/htslib-1.16+ds/test/index.vcf > /tmp/zSlmzuu2uK/index.vcf.gz + /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/tMp1A4dO9q/index.vcf.gz.csi /build/reproducible-path/htslib-1.16+ds/test/index.vcf > /tmp/tMp1A4dO9q/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/zSlmzuu2uK/index.vcf.gz + /build/reproducible-path/htslib-1.16+ds/test/test_index -c /tmp/tMp1A4dO9q/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/zSlmzuu2uK/index.vcf.gz.tbi /build/reproducible-path/htslib-1.16+ds/test/index.vcf > /tmp/zSlmzuu2uK/index.vcf.gz + /build/reproducible-path/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/tMp1A4dO9q/index.vcf.gz.tbi /build/reproducible-path/htslib-1.16+ds/test/index.vcf > /tmp/tMp1A4dO9q/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_index -t /tmp/zSlmzuu2uK/index.vcf.gz + /build/reproducible-path/htslib-1.16+ds/test/test_index -t /tmp/tMp1A4dO9q/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/tabix /tmp/zSlmzuu2uK/index.vcf.gz##idx##/tmp/zSlmzuu2uK/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.16+ds/tabix /tmp/tMp1A4dO9q/index.vcf.gz##idx##/tmp/tMp1A4dO9q/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/zSlmzuu2uK/index2.bam 1:1000000-1000000 + /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/tMp1A4dO9q/index2.bam 1:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/zSlmzuu2uK/index2.bam 1:2000000-2000000 + /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/tMp1A4dO9q/index2.bam 1:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/zSlmzuu2uK/index2.bam 2:1000000-1000000 + /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/tMp1A4dO9q/index2.bam 2:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/zSlmzuu2uK/index2.bam 2:2000000-2000000 + /build/reproducible-path/htslib-1.16+ds/test/test_view /tmp/tMp1A4dO9q/index2.bam 2:2000000-2000000 .. ok test_view testing multi-ref CRAM modes: @@ -2850,10 +2886,10 @@ .. ok test_vcf_api: - /build/reproducible-path/htslib-1.16+ds/test/test-vcf-api /tmp/zSlmzuu2uK/test-vcf-api.bcf + /build/reproducible-path/htslib-1.16+ds/test/test-vcf-api /tmp/tMp1A4dO9q/test-vcf-api.bcf [W::bcf_record_check] Bad BCF record at 1:1: No REF allele [E::bcf_index_build3] TBI indices for BCF files are not supported -[E::idx_find_and_load] Could not retrieve index file for '/tmp/zSlmzuu2uK/test-vcf-api.bcf' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/tMp1A4dO9q/test-vcf-api.bcf' .. ok test_bcf2vcf: @@ -2861,7 +2897,7 @@ .. ok test_vcf_sweep: - /build/reproducible-path/htslib-1.16+ds/test/test-vcf-sweep /tmp/zSlmzuu2uK/test-vcf-api.bcf + /build/reproducible-path/htslib-1.16+ds/test/test-vcf-sweep /tmp/tMp1A4dO9q/test-vcf-api.bcf .. ok test_vcf_various: @@ -2885,43 +2921,43 @@ .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/zSlmzuu2uK -s 74452500 + /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/tMp1A4dO9q -s 74452500 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/zSlmzuu2uK -s 34270147 + /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/tMp1A4dO9q -s 34270147 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/zSlmzuu2uK -s 11108528 + /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/tMp1A4dO9q -s 11108528 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/zSlmzuu2uK -s 42233895 + /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/tMp1A4dO9q -s 42233895 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/zSlmzuu2uK -s 8111117 + /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/tMp1A4dO9q -s 8111117 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/zSlmzuu2uK -s 85644070 + /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/tMp1A4dO9q -s 85644070 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/zSlmzuu2uK -s 49879942 + /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/tMp1A4dO9q -s 49879942 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/zSlmzuu2uK -s 47881429 + /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/tMp1A4dO9q -s 47881429 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/zSlmzuu2uK -s 69081244 + /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/tMp1A4dO9q -s 69081244 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/zSlmzuu2uK -s 83459376 + /build/reproducible-path/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/tMp1A4dO9q -s 83459376 .. ok test_command: @@ -2929,15 +2965,15 @@ .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.16+ds/test/test_view -t ce.fa -C /tmp/zSlmzuu2uK/headernul0.bam + /build/reproducible-path/htslib-1.16+ds/test/test_view -t ce.fa -C /tmp/tMp1A4dO9q/headernul0.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.16+ds/test/test_view -t ce.fa -C /tmp/zSlmzuu2uK/headernul1.bam + /build/reproducible-path/htslib-1.16+ds/test/test_view -t ce.fa -C /tmp/tMp1A4dO9q/headernul1.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.16+ds/test/test_view -t ce.fa -C /tmp/zSlmzuu2uK/headernul678.bam + /build/reproducible-path/htslib-1.16+ds/test/test_view -t ce.fa -C /tmp/tMp1A4dO9q/headernul678.bam .. ok test_rebgzip: Alternate zlib/deflate library detected @@ -3000,7 +3036,7 @@ failed .. 0 make[2]: Leaving directory '/build/reproducible-path/htslib-1.16+ds' - rm -fr -- /tmp/dh-xdg-rundir-3uIgDtCx + rm -fr -- /tmp/dh-xdg-rundir-mCK8LKmn make[1]: Leaving directory '/build/reproducible-path/htslib-1.16+ds' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_test-indep @@ -3028,10 +3064,10 @@ mkdir -p -m 755 /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/bin /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/include /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/include/htslib /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/lib/aarch64-linux-gnu /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/share/man/man1 /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/share/man/man5 /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/share/man/man7 /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig if test -n "/usr/lib/aarch64-linux-gnu/htslib"; then mkdir -p -m 755 /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/lib/aarch64-linux-gnu/htslib; fi install -p -m 644 libhts.so /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libhts.so.1.16 -sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/aarch64-linux-gnu#g;s#@-PACKAGE_VERSION@#1.16#g' htslib.pc.tmp > /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/htslib.pc -chmod 644 /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/htslib.pc ln -sf libhts.so.1.16 /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libhts.so ln -sf libhts.so.1.16 /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libhts.so.3 +sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/aarch64-linux-gnu#g;s#@-PACKAGE_VERSION@#1.16#g' htslib.pc.tmp > /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/htslib.pc +chmod 644 /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/htslib.pc install -p bgzip htsfile tabix /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/lib/aarch64-linux-gnu/htslib; fi install -p -m 644 htslib/*.h /build/reproducible-path/htslib-1.16+ds/debian/tmp/usr/include/htslib @@ -3104,15 +3140,15 @@ install -m0755 -d debian/libhts3/usr/share/doc/libhts3 install -p -m0644 debian/.debhelper/generated/libhts3/dh_installchangelogs.dch.trimmed debian/libhts3/usr/share/doc/libhts3/changelog.Debian install -p -m0644 NEWS debian/libhts3/usr/share/doc/libhts3/changelog + install -m0755 -d debian/htslib-test/usr/share/doc/htslib-test + install -p -m0644 debian/.debhelper/generated/htslib-test/dh_installchangelogs.dch.trimmed debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian + install -p -m0644 NEWS debian/htslib-test/usr/share/doc/htslib-test/changelog install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -p -m0644 debian/.debhelper/generated/libhts-dev/dh_installchangelogs.dch.trimmed debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/.debhelper/generated/tabix/dh_installchangelogs.dch.trimmed debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog - install -m0755 -d debian/htslib-test/usr/share/doc/htslib-test - install -p -m0644 debian/.debhelper/generated/htslib-test/dh_installchangelogs.dch.trimmed debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian - install -p -m0644 NEWS debian/htslib-test/usr/share/doc/htslib-test/changelog make[1]: Leaving directory '/build/reproducible-path/htslib-1.16+ds' dh_installman install -m0755 -d debian/libhts3/usr/share/man/man7/ @@ -3124,24 +3160,24 @@ install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/faidx.5 + man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/tabix.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/sam.5 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/vcf.5 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/htsfile.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/tabix.1 + mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 + chmod 0644 -- debian/tabix/usr/share/man/man1/tabix.1 + mv debian/libhts3/usr/share/man/man5/sam.5.dh-new debian/libhts3/usr/share/man/man5/sam.5 + chmod 0644 -- debian/libhts3/usr/share/man/man5/sam.5 mv debian/libhts3/usr/share/man/man5/faidx.5.dh-new debian/libhts3/usr/share/man/man5/faidx.5 chmod 0644 -- debian/libhts3/usr/share/man/man5/faidx.5 mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5 chmod 0644 -- debian/libhts3/usr/share/man/man5/vcf.5 - mv debian/libhts3/usr/share/man/man5/sam.5.dh-new debian/libhts3/usr/share/man/man5/sam.5 - chmod 0644 -- debian/libhts3/usr/share/man/man5/sam.5 - mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 - chmod 0644 -- debian/tabix/usr/share/man/man1/htsfile.1 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 chmod 0644 -- debian/tabix/usr/share/man/man1/bgzip.1 - mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 - chmod 0644 -- debian/tabix/usr/share/man/man1/tabix.1 + mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 + chmod 0644 -- debian/tabix/usr/share/man/man1/htsfile.1 mv debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 chmod 0644 -- debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 dh_lintian @@ -3161,47 +3197,47 @@ ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism dh_compress - cd debian/libhts3 cd debian/htslib-test - cd debian/libhts-dev cd debian/tabix - chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian - chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian - chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 + cd debian/libhts-dev + cd debian/libhts3 chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 - gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian - gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 - gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian + chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 + gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian + chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 + chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian cd '/build/reproducible-path/htslib-1.16+ds' cd '/build/reproducible-path/htslib-1.16+ds' + gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian + gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/build/reproducible-path/htslib-1.16+ds' cd '/build/reproducible-path/htslib-1.16+ds' rm -f debian/htslib-test.debhelper.log debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/htslib-1.16+ds' dh_fixperms - find debian/libhts3 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/htslib-test ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libhts3/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/htslib-test ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/libhts3 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts3/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/htslib-test -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name simple_test_driver.sh -exec chmod +x \{\} \; @@ -3214,10 +3250,10 @@ dh_missing make[1]: Leaving directory '/build/reproducible-path/htslib-1.16+ds' dh_dwz -a - install -m0755 -d debian/libhts3/usr/lib/debug/.dwz/aarch64-linux-gnu - dwz -mdebian/libhts3/usr/lib/debug/.dwz/aarch64-linux-gnu/libhts3.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/libhts3.debug -- debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so debian/libhts3/usr/lib/aarch64-linux-gnu/libhts.so.1.16 install -m0755 -d debian/tabix/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/tabix/usr/lib/debug/.dwz/aarch64-linux-gnu/tabix.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/tabix.debug -- debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix + install -m0755 -d debian/libhts3/usr/lib/debug/.dwz/aarch64-linux-gnu + dwz -mdebian/libhts3/usr/lib/debug/.dwz/aarch64-linux-gnu/libhts3.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/libhts3.debug -- debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so debian/libhts3/usr/lib/aarch64-linux-gnu/libhts.so.1.16 dwz: debian/libhts3/usr/lib/aarch64-linux-gnu/libhts.so.1.16: DWARF compression not beneficial - old size 904061 new size 926047 objcopy --compress-debug-sections debian/libhts3/usr/lib/debug/.dwz/aarch64-linux-gnu/libhts3.debug chmod 0644 -- debian/libhts3/usr/lib/debug/.dwz/aarch64-linux-gnu/libhts3.debug @@ -3228,23 +3264,28 @@ make[1]: Entering directory '/build/reproducible-path/htslib-1.16+ds' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/1f - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/1f/7e1cf517d4c55515b2bcb102a13154dc387fe9.debug - install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/4a - objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/aarch64-linux-gnu/libhts.so.1.16 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/4a/3fbe3153d5e8daf13da0ed610eb56f9a017af2.debug - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/1f/7e1cf517d4c55515b2bcb102a13154dc387fe9.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/1f/7e1cf517d4c55515b2bcb102a13154dc387fe9.debug debian/tabix/usr/bin/tabix install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/00 objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/00/45b6de140e7e983bcdef58adfa9f1d4c58a5b4.debug + install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/4a + objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/aarch64-linux-gnu/libhts.so.1.16 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/4a/3fbe3153d5e8daf13da0ed610eb56f9a017af2.debug + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/00/45b6de140e7e983bcdef58adfa9f1d4c58a5b4.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/00/45b6de140e7e983bcdef58adfa9f1d4c58a5b4.debug debian/tabix/usr/bin/htsfile chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/4a/3fbe3153d5e8daf13da0ed610eb56f9a017af2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/aarch64-linux-gnu/libhts.so.1.16 + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/48 + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/48/41eb3749220c0d948b299a76bbac3458f7af30.debug objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/4a/3fbe3153d5e8daf13da0ed610eb56f9a017af2.debug debian/libhts3/usr/lib/aarch64-linux-gnu/libhts.so.1.16 install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ab objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ab/9b8eb6c784ba4b7dadae1a6bcc9d04c3e767c7.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ab/9b8eb6c784ba4b7dadae1a6bcc9d04c3e767c7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3.so objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ab/9b8eb6c784ba4b7dadae1a6bcc9d04c3e767c7.debug debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3.so + install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/5c + objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/5c/2418335e1427aaf614f6a48867d6995cee4028.debug + chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/5c/2418335e1427aaf614f6a48867d6995cee4028.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so + objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/5c/2418335e1427aaf614f6a48867d6995cee4028.debug debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/e4 objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_libcurl.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/e4/8821d7e761db428f5aa9d874d7187dcea4eb0b.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/e4/8821d7e761db428f5aa9d874d7187dcea4eb0b.debug @@ -3255,26 +3296,21 @@ chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/8d/807e27d41ec3d35e68d7b63a30272c7495e1c2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/8d/807e27d41ec3d35e68d7b63a30272c7495e1c2.debug debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so - install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/5c - objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/5c/2418335e1427aaf614f6a48867d6995cee4028.debug - chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/5c/2418335e1427aaf614f6a48867d6995cee4028.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so - objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/5c/2418335e1427aaf614f6a48867d6995cee4028.debug debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/48/41eb3749220c0d948b299a76bbac3458f7af30.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/48/41eb3749220c0d948b299a76bbac3458f7af30.debug debian/tabix/usr/bin/bgzip rm -fr debian/libhts3/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libhts3/usr/lib/debug install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/share/doc ln -s libhts3 debian/.debhelper/libhts3/dbgsym-root/usr/share/doc/libhts3-dbgsym install -m0755 -d debian/.debhelper/libhts3 - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/00/45b6de140e7e983bcdef58adfa9f1d4c58a5b4.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/00/45b6de140e7e983bcdef58adfa9f1d4c58a5b4.debug debian/tabix/usr/bin/htsfile - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/48 - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/48/41eb3749220c0d948b299a76bbac3458f7af30.debug - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/48/41eb3749220c0d948b299a76bbac3458f7af30.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/48/41eb3749220c0d948b299a76bbac3458f7af30.debug debian/tabix/usr/bin/bgzip + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/1f + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/1f/7e1cf517d4c55515b2bcb102a13154dc387fe9.debug + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/1f/7e1cf517d4c55515b2bcb102a13154dc387fe9.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/1f/7e1cf517d4c55515b2bcb102a13154dc387fe9.debug debian/tabix/usr/bin/tabix install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tabix/usr/lib/debug/.dwz @@ -3294,9 +3330,9 @@ rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/tabix/DEBIAN - dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip + dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/tabix install -m0755 -d debian/libhts3/DEBIAN - dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/aarch64-linux-gnu/libhts.so.1.16 debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so + dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/aarch64-linux-gnu/libhts.so.1.16 debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_gcs.so debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/aarch64-linux-gnu/htslib/hfile_s3_write.so dh_installdeb install -m0755 -d debian/libhts3/DEBIAN install -p -m0644 debian/.debhelper/generated/libhts3/triggers debian/libhts3/DEBIAN/triggers @@ -3308,60 +3344,60 @@ echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev - install -m0755 -d debian/htslib-test/DEBIAN - echo misc:Depends= >> debian/htslib-test.substvars - echo misc:Pre-Depends= >> debian/htslib-test.substvars - dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -Pdebian/htslib-test - install -m0755 -d debian/libhts3/DEBIAN - echo misc:Depends= >> debian/libhts3.substvars - echo misc:Pre-Depends= >> debian/libhts3.substvars - install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN - dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/.debhelper/libhts3/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libhts3-dbgsym "-DDepends=libhts3 (= \${binary:Version})" "-DDescription=debug symbols for libhts3" "-DBuild-Ids=4a3fbe3153d5e8daf13da0ed610eb56f9a017af2 5c2418335e1427aaf614f6a48867d6995cee4028 8d807e27d41ec3d35e68d7b63a30272c7495e1c2 ab9b8eb6c784ba4b7dadae1a6bcc9d04c3e767c7 e48821d7e761db428f5aa9d874d7187dcea4eb0b" -DSection=debug -UReplaces -UBreaks install -m0755 -d debian/tabix/DEBIAN echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=0045b6de140e7e983bcdef58adfa9f1d4c58a5b4 1f7e1cf517d4c55515b2bcb102a13154dc387fe9 4841eb3749220c0d948b299a76bbac3458f7af30" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - chmod 0644 -- debian/htslib-test/DEBIAN/control - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control - dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix + install -m0755 -d debian/libhts3/DEBIAN + echo misc:Depends= >> debian/libhts3.substvars + echo misc:Pre-Depends= >> debian/libhts3.substvars + install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN + dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/.debhelper/libhts3/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libhts3-dbgsym "-DDepends=libhts3 (= \${binary:Version})" "-DDescription=debug symbols for libhts3" "-DBuild-Ids=4a3fbe3153d5e8daf13da0ed610eb56f9a017af2 5c2418335e1427aaf614f6a48867d6995cee4028 8d807e27d41ec3d35e68d7b63a30272c7495e1c2 ab9b8eb6c784ba4b7dadae1a6bcc9d04c3e767c7 e48821d7e761db428f5aa9d874d7187dcea4eb0b" -DSection=debug -UReplaces -UBreaks + install -m0755 -d debian/htslib-test/DEBIAN + echo misc:Depends= >> debian/htslib-test.substvars + echo misc:Pre-Depends= >> debian/htslib-test.substvars + dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -Pdebian/htslib-test chmod 0644 -- debian/libhts-dev/DEBIAN/control + chmod 0644 -- debian/htslib-test/DEBIAN/control chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3 - chmod 0644 -- debian/tabix/DEBIAN/control + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control + dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix chmod 0644 -- debian/libhts3/DEBIAN/control + chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums - install -m0755 -d debian/libhts3/DEBIAN - install -m0755 -d debian/htslib-test/DEBIAN install -m0755 -d debian/libhts-dev/DEBIAN + install -m0755 -d debian/libhts3/DEBIAN install -m0755 -d debian/tabix/DEBIAN - cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + install -m0755 -d debian/htslib-test/DEBIAN cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/htslib-test >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN - cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN + cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/htslib-test/DEBIAN/md5sums + chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums - chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums + chmod 0644 -- debian/htslib-test/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/libhts3 .. - dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root .. - dpkg-deb --root-owner-group --build debian/libhts-dev .. - dpkg-deb --root-owner-group --build debian/htslib-test .. dpkg-deb --root-owner-group --build debian/tabix .. + dpkg-deb --root-owner-group --build debian/htslib-test .. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. + dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root .. + dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb: building package 'libhts3' in '../libhts3_1.16+ds-3_arm64.deb'. +dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.16+ds-3_arm64.deb'. dpkg-deb: building package 'libhts3-dbgsym' in '../libhts3-dbgsym_1.16+ds-3_arm64.deb'. -dpkg-deb: building package 'htslib-test' in '../htslib-test_1.16+ds-3_all.deb'. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.16+ds-3_arm64.deb'. -dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.16+ds-3_arm64.deb'. dpkg-deb: building package 'tabix' in '../tabix_1.16+ds-3_arm64.deb'. +dpkg-deb: building package 'htslib-test' in '../htslib-test_1.16+ds-3_all.deb'. dpkg-genbuildinfo --build=binary -O../htslib_1.16+ds-3_arm64.buildinfo dpkg-genchanges --build=binary -O../htslib_1.16+ds-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3370,12 +3406,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1003555/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1003555/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2088898 and its subdirectories -I: Current time: Sun Jan 7 16:13:28 -12 2024 -I: pbuilder-time-stamp: 1704687208 +I: removing directory /srv/workspace/pbuilder/1003555 and its subdirectories +I: Current time: Mon Feb 10 00:41:56 +14 2025 +I: pbuilder-time-stamp: 1739097716