Diff of the two buildlogs: -- --- b1/build.log 2023-04-14 05:59:22.640582496 +0000 +++ b2/build.log 2023-04-14 06:01:08.871866703 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 13 17:56:21 -12 2023 -I: pbuilder-time-stamp: 1681451781 +I: Current time: Fri May 17 02:22:25 +14 2024 +I: pbuilder-time-stamp: 1715862145 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./drawxtl_5.5.orig.tar.gz] I: copying [./drawxtl_5.5-6.debian.tar.xz] I: Extracting source -gpgv: Signature made Fri Dec 2 04:44:14 2022 -12 +gpgv: Signature made Sat Dec 3 06:44:14 2022 +14 gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./drawxtl_5.5-6.dsc: no acceptable signature found @@ -31,11 +31,20 @@ dpkg-source: info: applying fix_gcc-11_build_failures.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3534/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/7318/tmp/hooks/D01_modify_environment starting +debug: Running on codethink15-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/7318/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/7318/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -45,38 +54,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='3534' + PPID='7318' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iG2Fz2VR/pbuilderrc_F0OC --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iG2Fz2VR/b1 --logfile b1/build.log drawxtl_5.5-6.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iG2Fz2VR/pbuilderrc_Jdyg --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iG2Fz2VR/b2 --logfile b2/build.log --extrapackages usrmerge drawxtl_5.5-6.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink16-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 10 22:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3534/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 16 07:12 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/7318/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -271,7 +280,7 @@ Get: 134 http://deb.debian.org/debian bookworm/main arm64 libxpm4 arm64 1:3.5.12-1.1 [45.2 kB] Get: 135 http://deb.debian.org/debian bookworm/main arm64 libxpm-dev arm64 1:3.5.12-1.1 [102 kB] Get: 136 http://deb.debian.org/debian bookworm/main arm64 sharutils arm64 1:4.15.2-9 [255 kB] -Fetched 66.4 MB in 3s (22.7 MB/s) +Fetched 66.4 MB in 1s (51.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -831,8 +840,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/drawxtl-5.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../drawxtl_5.5-6_source.changes +I: user script /srv/workspace/pbuilder/7318/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/7318/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/drawxtl-5.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../drawxtl_5.5-6_source.changes dpkg-buildpackage: info: source package drawxtl dpkg-buildpackage: info: source version 5.5-6 dpkg-buildpackage: info: source distribution unstable @@ -884,6 +902,10 @@ DRAWxtl3.cxx:2419:11: warning: variable 'saved_boxlim' set but not used [-Wunused-but-set-variable] 2419 | float saved_boxlim[3]; | ^~~~~~~~~~~~ +CrystalView.cxx: In function 'void start_picking(int, int, int, int)': +CrystalView.cxx:2346:21: warning: variable 'cpz' set but not used [-Wunused-but-set-variable] + 2346 | float cpx, cpy, cpz; + | ^~~ DRAWxtl3.cxx: In function 'void calculate_sas()': DRAWxtl3.cxx:3304:11: warning: variable 'saved_boxlim' set but not used [-Wunused-but-set-variable] 3304 | float saved_boxlim[3]; @@ -891,10 +913,6 @@ DRAWxtl3.cxx:3306:11: warning: variable 'saved_crystlim' set but not used [-Wunused-but-set-variable] 3306 | float saved_crystlim[6]; | ^~~~~~~~~~~~~~ -CrystalView.cxx: In function 'void start_picking(int, int, int, int)': -CrystalView.cxx:2346:21: warning: variable 'cpz' set but not used [-Wunused-but-set-variable] - 2346 | float cpx, cpy, cpz; - | ^~~ CrystalView.cxx: In function 'int main(int, char**)': CrystalView.cxx:187:24: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 187 | getcwd (drvui->Cur_Dir, 1023); @@ -1027,12 +1045,11 @@ DRAWxtl3.cxx:4046:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 4046 | fgets (line, 100, msmsfile); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ +Compiling Edit2.cxx ... Edit1.cxx: In function 'void Edit_Bond_cb()': Edit1.cxx:1399:9: warning: variable 'newBonds' set but not used [-Wunused-but-set-variable] 1399 | int newBonds = 0; | ^~~~~~~~ -Compiling Edit2.cxx ... -Compiling Ellipsoids.cxx ... CrystalView.cxx: In function 'void Load_Bond_Data(const char*, char*)': CrystalView.cxx:1359:27: warning: '%4s' directive writing between 4 and 4999 bytes into a region of size 100 [-Wformat-overflow=] 1359 | sprintf (string, "%4s %8.3f\n", atoms[i], d_list[i]); @@ -1048,11 +1065,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -Compiling Flu_Combo_Box.cxx ... -Edit2.cxx: In function 'void Map_Info_cb()': -Edit2.cxx:1001:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] - 1001 | Edit_Maps_Save_cb ((Fl_Button *) zero, &zero); - | ^~~~~~~~~~~~~~~~~~ +Compiling Ellipsoids.cxx ... Edit1.cxx: In function 'void Automation_Go_cb()': Edit1.cxx:378:40: warning: 'd.png' directive writing 5 bytes into a region of size between 2 and 12 [-Wformat-overflow=] 378 | sprintf(format," +O%%s%%.%dd.png",num); @@ -1139,6 +1152,11 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +Compiling Flu_Combo_Box.cxx ... +Edit2.cxx: In function 'void Map_Info_cb()': +Edit2.cxx:1001:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] + 1001 | Edit_Maps_Save_cb ((Fl_Button *) zero, &zero); + | ^~~~~~~~~~~~~~~~~~ Edit2.cxx: In function 'void Edit_Surfaces_Save_cb(Fl_Button*, int*)': Edit2.cxx:3319:9: warning: variable 'Frame_No' set but not used [-Wunused-but-set-variable] 3319 | int Frame_No = 1; @@ -1148,7 +1166,6 @@ 800 | chdir (drvui->Cur_Dir); // switch to new directory | ~~~~~~^~~~~~~~~~~~~~~~ Compiling Flu_Combo_List.cxx ... -Compiling Flu_Spinner.cxx ... Edit1.cxx: In function 'void Modify_Occ_cb(Fl_Widget*, void*)': Edit1.cxx:3471:30: warning: '%2d' directive writing between 2 and 10 bytes into a region of size 8 [-Wformat-overflow=] 3471 | sprintf (value, "%2d", n); @@ -1165,6 +1182,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +Compiling Flu_Spinner.cxx ... Edit2.cxx: In function 'void Modify_Spheres_cb(Fl_Widget*, void*)': Edit2.cxx:1585:30: warning: '%2d' directive writing between 2 and 10 bytes into a region of size 8 [-Wformat-overflow=] 1585 | sprintf (value, "%2d", n); @@ -1215,7 +1233,6 @@ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ Compiling gl2gif.cxx ... -Compiling Help.cxx ... Fourier.cxx: In function 'void read_m81(char*, int)': Fourier.cxx:718:15: warning: variable 'nmap' set but not used [-Wunused-but-set-variable] 718 | int nrec, nmap, maptype; @@ -1240,6 +1257,7 @@ Fourier.cxx:3467:11: warning: variable 'reslt' set but not used [-Wunused-but-set-variable] 3467 | char *reslt = NULL; | ^~~~~ +Compiling Help.cxx ... Fourier.cxx: In function 'void read_fcf(char*, int)': Fourier.cxx:338:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets (string, 80, mapin); @@ -1320,6 +1338,19 @@ Fourier.cxx:1712:31: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1712 | fread (ftmp, 4, 1, mapin); | ~~~~~~^~~~~~~~~~~~~~~~~~~ +Edit2.cxx: In function 'void Modify_Ellipsoids_cb(Fl_Widget*, void*)': +Edit2.cxx:1245:34: warning: ' *' directive writing 2 bytes into a region of size between 1 and 6 [-Wformat-overflow=] + 1245 | sprintf (string, "%4s *", atom); + | ^~ +In function 'int sprintf(char*, const char*, ...)', + inlined from 'void Modify_Ellipsoids_cb(Fl_Widget*, void*)' at Edit2.cxx:1245:14: +/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 12 bytes into a destination of size 10 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ Fourier.cxx: In function 'void read_m80(char*, int)': Fourier.cxx:1987:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1987 | fgets (string, 199, mapin); @@ -1598,22 +1629,8 @@ gl2gif.cxx:1309:41: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1309 | register long dist, newdist; | ^~~~~~~ -Edit2.cxx: In function 'void Modify_Ellipsoids_cb(Fl_Widget*, void*)': -Edit2.cxx:1245:34: warning: ' *' directive writing 2 bytes into a region of size between 1 and 6 [-Wformat-overflow=] - 1245 | sprintf (string, "%4s *", atom); - | ^~ -In function 'int sprintf(char*, const char*, ...)', - inlined from 'void Modify_Ellipsoids_cb(Fl_Widget*, void*)' at Edit2.cxx:1245:14: -/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 12 bytes into a destination of size 10 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ Compiling Import.cxx ... Compiling MC.cxx ... -Compiling mpVector.cxx ... Import.cxx: In function 'void import_shelx(char*, int, int, int)': Import.cxx:2221:9: warning: variable 'read_start' set but not used [-Wunused-but-set-variable] 2221 | int read_start; /* flag for start of atom list */ @@ -1621,8 +1638,6 @@ Import.cxx:2223:9: warning: variable 'read_uij' set but not used [-Wunused-but-set-variable] 2223 | int read_uij; /* flag for uij card */ | ^~~~~~~~ -Compiling Read_Input.cxx ... -Compiling symmtry.cxx ... Import.cxx: In function 'void import_cif(char*, int, int, int*, int)': Import.cxx:235:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets (string, 255, impin); @@ -1696,6 +1711,9 @@ Import.cxx:3527:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 3527 | fgets (line, 85, impin); | ~~~~~~^~~~~~~~~~~~~~~~~ +Compiling mpVector.cxx ... +Compiling Read_Input.cxx ... +Compiling symmtry.cxx ... Compiling Tb_Window.cxx ... Import.cxx: In function 'void import_pcr(char*, int, int, int)': Import.cxx:3228:39: warning: '%3d' directive writing between 3 and 10 bytes into a region of size 7 [-Wformat-overflow=] @@ -1731,11 +1749,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -MC.cxx: In function 'TRIANGLE* MarchingCubesRec(int, int, int, float, float, float, int, int*, int*, int*, float, mp4Vector*, int&)': -MC.cxx:664:38: warning: argument 1 range [18446744072993723734, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] - 664 | bool *marchedCubes = new bool[all]; - | ^ -MC.cxx:664:38: note: in a call to built-in allocation function 'void* operator new [](long unsigned int)' In function 'void trim_string(char*, int)', inlined from 'void read_inp(int)' at Read_Input.cxx:2034:18: Read_Input.cxx:3245:21: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] @@ -1745,6 +1758,11 @@ Read_Input.cxx:851:10: note: at offset 69 into destination object 't_color' of size 40 851 | char t_color[40]; /* temporary ellipsoid color storage */ | ^~~~~~~ +MC.cxx: In function 'TRIANGLE* MarchingCubesRec(int, int, int, float, float, float, int, int*, int*, int*, float, mp4Vector*, int&)': +MC.cxx:664:38: warning: argument 1 range [18446744072993723734, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + 664 | bool *marchedCubes = new bool[all]; + | ^ +MC.cxx:664:38: note: in a call to built-in allocation function 'void* operator new [](long unsigned int)' Linking ../../exe/DRAWxtl55... make[2]: Leaving directory '/build/drawxtl-5.5/source/DRAWxtl55' make[1]: Leaving directory '/build/drawxtl-5.5' @@ -1799,12 +1817,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/7318/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/7318/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3534 and its subdirectories -I: Current time: Thu Apr 13 17:59:21 -12 2023 -I: pbuilder-time-stamp: 1681451961 +I: removing directory /srv/workspace/pbuilder/7318 and its subdirectories +I: Current time: Fri May 17 02:24:07 +14 2024 +I: pbuilder-time-stamp: 1715862247