Diff of the two buildlogs: -- --- b1/build.log 2023-04-08 17:02:26.731097493 +0000 +++ b2/build.log 2023-04-08 17:07:34.420882683 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Apr 8 04:58:31 -12 2023 -I: pbuilder-time-stamp: 1680973111 +I: Current time: Sat May 11 13:25:30 +14 2024 +I: pbuilder-time-stamp: 1715383530 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./ciftools-java_4.0.5.orig.tar.gz] I: copying [./ciftools-java_4.0.5-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Jan 12 23:24:33 2023 -12 +gpgv: Signature made Sat Jan 14 01:24:33 2023 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key @@ -28,11 +28,20 @@ dpkg-source: info: applying deactivate_tests_using_network.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/17674/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/5534/tmp/hooks/D01_modify_environment starting +debug: Running on codethink15-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/5534/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/5534/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -42,38 +51,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='17674' + PPID='5534' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xOD6BTXM/pbuilderrc_qvIJ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xOD6BTXM/b1 --logfile b1/build.log ciftools-java_4.0.5-1.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xOD6BTXM/pbuilderrc_75EE --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xOD6BTXM/b2 --logfile b2/build.log --extrapackages usrmerge ciftools-java_4.0.5-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink14-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 6 22:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/17674/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 10 06:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/5534/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -377,7 +386,7 @@ Get: 254 http://deb.debian.org/debian bookworm/main arm64 maven all 3.8.7-1 [18.9 kB] Get: 255 http://deb.debian.org/debian bookworm/main arm64 maven-repo-helper all 1.11 [142 kB] Get: 256 http://deb.debian.org/debian bookworm/main arm64 maven-debian-helper all 2.6.2 [108 kB] -Fetched 362 MB in 28s (12.8 MB/s) +Fetched 362 MB in 35s (10.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -1598,8 +1607,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/ciftools-java-4.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ciftools-java_4.0.5-1_source.changes +I: user script /srv/workspace/pbuilder/5534/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/5534/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/ciftools-java-4.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ciftools-java_4.0.5-1_source.changes dpkg-buildpackage: info: source package ciftools-java dpkg-buildpackage: info: source version 4.0.5-1 dpkg-buildpackage: info: source distribution unstable @@ -1656,8 +1674,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 01:02 min -[INFO] Finished at: 2023-04-08T05:01:13-12:00 +[INFO] Total time: 01:16 min +[INFO] Finished at: 2024-05-11T13:29:13+14:00 [INFO] ------------------------------------------------------------------------  dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/ciftools-java-4.0.5 -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/ciftools-java-4.0.5/debian -Dmaven.repo.local=/build/ciftools-java-4.0.5/debian/maven-repo --batch-mode test @@ -1688,19 +1706,19 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running org.rcsb.cif.IntegrationTest -[WARNING] Tests run: 14, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 10.842 s - in org.rcsb.cif.IntegrationTest +[WARNING] Tests run: 14, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 11.642 s - in org.rcsb.cif.IntegrationTest [INFO] Running org.rcsb.cif.DemoTest -[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0 s - in org.rcsb.cif.DemoTest +[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.001 s - in org.rcsb.cif.DemoTest [INFO] Running org.rcsb.cif.WriterTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.768 s - in org.rcsb.cif.WriterTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.628 s - in org.rcsb.cif.WriterTest [INFO] Running org.rcsb.cif.SchemaValidationTest observed exception as expected: org.rcsb.cif.SchemaMismatchException: CIF_CORE schema should contain exclusively flat column names - format: category_name_column_name observed exception as expected: org.rcsb.cif.SchemaMismatchException: MMCIF schema should not contain flat column names - format: category_name.column_name observed exception as expected: org.rcsb.cif.EmptyColumnException: anonymous column is undefined observed exception as expected: org.rcsb.cif.EmptyColumnException: column length_a is undefined -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.633 s - in org.rcsb.cif.SchemaValidationTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.53 s - in org.rcsb.cif.SchemaValidationTest [INFO] Running org.rcsb.cif.CifOptionsTest -[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 3.729 s - in org.rcsb.cif.CifOptionsTest +[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 2.653 s - in org.rcsb.cif.CifOptionsTest [INFO] Running org.rcsb.cif.FootprintTest mismatch in column _citation.pdbx_database_id_PubMed 5,2,[Delta, ByteArray] vs 5,3,[Delta, RunLength, ByteArray] @@ -1746,7 +1764,7 @@ 1405,4,[Delta, RunLength, IntegerPacking, ByteArray] vs 1405,3,[RunLength, IntegerPacking, ByteArray] mismatch in column _atom_site.pdbx_PDB_model_num 1405,4,[Delta, RunLength, IntegerPacking, ByteArray] vs 1405,3,[RunLength, IntegerPacking, ByteArray] -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.333 s - in org.rcsb.cif.FootprintTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.276 s - in org.rcsb.cif.FootprintTest [INFO] Running org.rcsb.cif.NonMmcifFormatTest database_code_depnum_ccdc_archive 1 database_code_CSD 1 @@ -1786,29 +1804,29 @@ atom_site_fract_x 30 atom_site_fract_y 30 atom_site_fract_z 30 -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.108 s - in org.rcsb.cif.NonMmcifFormatTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.068 s - in org.rcsb.cif.NonMmcifFormatTest [INFO] Running org.rcsb.cif.CaseSensitivityTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.116 s - in org.rcsb.cif.CaseSensitivityTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.136 s - in org.rcsb.cif.CaseSensitivityTest [INFO] Running org.rcsb.cif.ReaderTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.911 s - in org.rcsb.cif.ReaderTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.776 s - in org.rcsb.cif.ReaderTest [INFO] Running org.rcsb.cif.binary.codec.DeltaCodecTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in org.rcsb.cif.binary.codec.DeltaCodecTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in org.rcsb.cif.binary.codec.DeltaCodecTest [INFO] Running org.rcsb.cif.binary.codec.FixedPointCodecTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in org.rcsb.cif.binary.codec.FixedPointCodecTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.binary.codec.FixedPointCodecTest [INFO] Running org.rcsb.cif.binary.codec.StringArrayCodecTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.029 s - in org.rcsb.cif.binary.codec.StringArrayCodecTest [INFO] Running org.rcsb.cif.binary.codec.IntervalQuantizationCodecTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.rcsb.cif.binary.codec.IntervalQuantizationCodecTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.rcsb.cif.binary.codec.IntervalQuantizationCodecTest [INFO] Running org.rcsb.cif.binary.codec.ByteArrayCodecTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.036 s - in org.rcsb.cif.binary.codec.ByteArrayCodecTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.031 s - in org.rcsb.cif.binary.codec.ByteArrayCodecTest [INFO] Running org.rcsb.cif.binary.codec.RunLengthCodecTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.rcsb.cif.binary.codec.RunLengthCodecTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.binary.codec.RunLengthCodecTest [INFO] Running org.rcsb.cif.binary.codec.IntegerPackingCodecTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.binary.codec.IntegerPackingCodecTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.rcsb.cif.binary.codec.IntegerPackingCodecTest [INFO] Running org.rcsb.cif.binary.codec.MessagePackCodecTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.054 s - in org.rcsb.cif.binary.codec.MessagePackCodecTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.072 s - in org.rcsb.cif.binary.codec.MessagePackCodecTest [INFO] Running org.rcsb.cif.TestHelper -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.TestHelper +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in org.rcsb.cif.TestHelper [INFO] [INFO] Results: [INFO] @@ -1817,8 +1835,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 34.280 s -[INFO] Finished at: 2023-04-08T05:01:52-12:00 +[INFO] Total time: 34.261 s +[INFO] Finished at: 2024-05-11T13:29:53+14:00 [INFO] ------------------------------------------------------------------------  create-stamp debian/debhelper-build-stamp dh_prep @@ -1841,8 +1859,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 1.540 s -[INFO] Finished at: 2023-04-08T05:01:58-12:00 +[INFO] Total time: 2.260 s +[INFO] Finished at: 2024-05-11T13:30:02+14:00 [INFO] ------------------------------------------------------------------------  mh_resolve_dependencies --non-interactive --offline --build -plibciftools-java --base-directory=/build/ciftools-java-4.0.5 --non-explore Analysing pom.xml... @@ -1875,12 +1893,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/5534/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/5534/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/17674 and its subdirectories -I: Current time: Sat Apr 8 05:02:25 -12 2023 -I: pbuilder-time-stamp: 1680973345 +I: removing directory /srv/workspace/pbuilder/5534 and its subdirectories +I: Current time: Sat May 11 13:30:33 +14 2024 +I: pbuilder-time-stamp: 1715383833