Diff of the two buildlogs: -- --- b1/build.log 2023-05-11 15:13:51.393965141 +0000 +++ b2/build.log 2023-05-11 15:18:29.881770448 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu May 11 03:07:35 -12 2023 -I: pbuilder-time-stamp: 1683817655 +I: Current time: Thu Jun 13 11:36:59 +14 2024 +I: pbuilder-time-stamp: 1718228219 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./cif-tools_1.0.7.orig.tar.gz] I: copying [./cif-tools_1.0.7-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Dec 29 20:23:50 2022 -12 +gpgv: Signature made Fri Dec 30 22:23:50 2022 +14 gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE gpgv: issuer "maarten@hekkelman.com" gpgv: Can't check signature: No public key @@ -26,52 +26,84 @@ dpkg-source: info: unpacking cif-tools_1.0.7-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/15860/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/22262/tmp/hooks/D01_modify_environment starting +debug: Running on codethink15-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 13 11:37 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/22262/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/22262/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='15860' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=22262 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aIOvQiEO/pbuilderrc_UFuO --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aIOvQiEO/b1 --logfile b1/build.log cif-tools_1.0.7-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aIOvQiEO/pbuilderrc_rw5O --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aIOvQiEO/b2 --logfile b2/build.log --extrapackages usrmerge cif-tools_1.0.7-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink16-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 10 22:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/15860/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 12 06:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/22262/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -179,7 +211,7 @@ Get: 58 http://deb.debian.org/debian bookworm/main arm64 libcifpp-dev arm64 5.0.7.1-1 [86.1 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libmcfp-dev arm64 1.2.3-1 [15.9 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 mrc arm64 1.3.6-1 [42.8 kB] -Fetched 53.0 MB in 3s (17.6 MB/s) +Fetched 53.0 MB in 1s (38.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -433,8 +465,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/cif-tools-1.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cif-tools_1.0.7-1_source.changes +I: user script /srv/workspace/pbuilder/22262/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/22262/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/cif-tools-1.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cif-tools_1.0.7-1_source.changes dpkg-buildpackage: info: source package cif-tools dpkg-buildpackage: info: source version 1.0.7-1 dpkg-buildpackage: info: source distribution unstable @@ -490,137 +531,137 @@ make -f CMakeFiles/pdb2cif.dir/build.make CMakeFiles/pdb2cif.dir/depend make[3]: Entering directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' make -f CMakeFiles/cif2pdb.dir/build.make CMakeFiles/cif2pdb.dir/depend -make -f CMakeFiles/cif-diff.dir/build.make CMakeFiles/cif-diff.dir/depend make[3]: Entering directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' +make -f CMakeFiles/cif-diff.dir/build.make CMakeFiles/cif-diff.dir/depend make[3]: Entering directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' make -f CMakeFiles/cif-grep.dir/build.make CMakeFiles/cif-grep.dir/depend -make -f CMakeFiles/cif-merge.dir/build.make CMakeFiles/cif-merge.dir/depend make[3]: Entering directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' -make -f CMakeFiles/cif-validate.dir/build.make CMakeFiles/cif-validate.dir/depend -make -f CMakeFiles/mmCQL.dir/build.make CMakeFiles/mmCQL.dir/depend -[ 7%] Generating cif2pdb_rsrc.obj, ALL +make -f CMakeFiles/cif-merge.dir/build.make CMakeFiles/cif-merge.dir/depend [ 3%] Generating pdb2cif_rsrc.obj, ALL +make -f CMakeFiles/cif-validate.dir/build.make CMakeFiles/cif-validate.dir/depend make[3]: Entering directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' +make -f CMakeFiles/mmCQL.dir/build.make CMakeFiles/mmCQL.dir/depend make[3]: Entering directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' /usr/bin/mrc -o /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/pdb2cif_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic +[ 7%] Generating cif2pdb_rsrc.obj, ALL /usr/bin/mrc -o /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/cif2pdb_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic +make[3]: Entering directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' [ 10%] Generating cif-diff_rsrc.obj, ALL /usr/bin/mrc -o /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/cif-diff_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic [ 14%] Generating cif-grep_rsrc.obj, ALL -[ 17%] Generating cif-validate_rsrc.obj, ALL -[ 21%] Generating cif-merge_rsrc.obj, ALL -/usr/bin/mrc -o /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/cif-merge_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/bin/mrc -o /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/cif-grep_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic +[ 17%] Generating cif-merge_rsrc.obj, ALL +/usr/bin/mrc -o /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/cif-merge_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic +[ 21%] Generating cif-validate_rsrc.obj, ALL /usr/bin/mrc -o /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/cif-validate_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic [ 25%] Generating mmCQL_rsrc.obj, ALL /usr/bin/mrc -o /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/mmCQL_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic cd /build/cif-tools-1.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cif-tools-1.0.7 /build/cif-tools-1.0.7 /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/CMakeFiles/cif2pdb.dir/DependInfo.cmake --color= -cd /build/cif-tools-1.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cif-tools-1.0.7 /build/cif-tools-1.0.7 /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/CMakeFiles/pdb2cif.dir/DependInfo.cmake --color= -cd /build/cif-tools-1.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cif-tools-1.0.7 /build/cif-tools-1.0.7 /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/CMakeFiles/cif-diff.dir/DependInfo.cmake --color= -cd /build/cif-tools-1.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cif-tools-1.0.7 /build/cif-tools-1.0.7 /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/CMakeFiles/cif-validate.dir/DependInfo.cmake --color= -cd /build/cif-tools-1.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cif-tools-1.0.7 /build/cif-tools-1.0.7 /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/CMakeFiles/cif-merge.dir/DependInfo.cmake --color= Deleting primary custom command output "/build/cif-tools-1.0.7/obj-aarch64-linux-gnu/cif2pdb_rsrc.obj" because another output "/build/cif-tools-1.0.7/obj-aarch64-linux-gnu/ALL" does not exist. +cd /build/cif-tools-1.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cif-tools-1.0.7 /build/cif-tools-1.0.7 /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/CMakeFiles/cif-diff.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' -cd /build/cif-tools-1.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cif-tools-1.0.7 /build/cif-tools-1.0.7 /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/CMakeFiles/cif-grep.dir/DependInfo.cmake --color= make -f CMakeFiles/cif2pdb.dir/build.make CMakeFiles/cif2pdb.dir/build +make[3]: Entering directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' +cd /build/cif-tools-1.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cif-tools-1.0.7 /build/cif-tools-1.0.7 /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/CMakeFiles/pdb2cif.dir/DependInfo.cmake --color= +[ 28%] Building CXX object CMakeFiles/cif2pdb.dir/src/cif2pdb.cpp.o +Deleting primary custom command output "/build/cif-tools-1.0.7/obj-aarch64-linux-gnu/cif-diff_rsrc.obj" because another output "/build/cif-tools-1.0.7/obj-aarch64-linux-gnu/ALL" does not exist. +cd /build/cif-tools-1.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cif-tools-1.0.7 /build/cif-tools-1.0.7 /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/CMakeFiles/cif-grep.dir/DependInfo.cmake --color= +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -g -O2 -ffile-prefix-map=/build/cif-tools-1.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/cif2pdb.dir/src/cif2pdb.cpp.o -MF CMakeFiles/cif2pdb.dir/src/cif2pdb.cpp.o.d -o CMakeFiles/cif2pdb.dir/src/cif2pdb.cpp.o -c /build/cif-tools-1.0.7/src/cif2pdb.cpp +cd /build/cif-tools-1.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cif-tools-1.0.7 /build/cif-tools-1.0.7 /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/CMakeFiles/cif-merge.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' +make -f CMakeFiles/cif-diff.dir/build.make CMakeFiles/cif-diff.dir/build +[ 32%] Building CXX object CMakeFiles/cif2pdb.dir/src/pr-main.cpp.o +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -g -O2 -ffile-prefix-map=/build/cif-tools-1.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/cif2pdb.dir/src/pr-main.cpp.o -MF CMakeFiles/cif2pdb.dir/src/pr-main.cpp.o.d -o CMakeFiles/cif2pdb.dir/src/pr-main.cpp.o -c /build/cif-tools-1.0.7/src/pr-main.cpp Deleting primary custom command output "/build/cif-tools-1.0.7/obj-aarch64-linux-gnu/pdb2cif_rsrc.obj" because another output "/build/cif-tools-1.0.7/obj-aarch64-linux-gnu/ALL" does not exist. make[3]: Entering directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' cd /build/cif-tools-1.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cif-tools-1.0.7 /build/cif-tools-1.0.7 /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/CMakeFiles/mmCQL.dir/DependInfo.cmake --color= -Deleting primary custom command output "/build/cif-tools-1.0.7/obj-aarch64-linux-gnu/cif-validate_rsrc.obj" because another output "/build/cif-tools-1.0.7/obj-aarch64-linux-gnu/ALL" does not exist. -make[3]: Leaving directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' -make -f CMakeFiles/cif-validate.dir/build.make CMakeFiles/cif-validate.dir/build make[3]: Leaving directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' make -f CMakeFiles/pdb2cif.dir/build.make CMakeFiles/pdb2cif.dir/build +cd /build/cif-tools-1.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cif-tools-1.0.7 /build/cif-tools-1.0.7 /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/CMakeFiles/cif-validate.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' -Deleting primary custom command output "/build/cif-tools-1.0.7/obj-aarch64-linux-gnu/cif-diff_rsrc.obj" because another output "/build/cif-tools-1.0.7/obj-aarch64-linux-gnu/ALL" does not exist. -make[3]: Entering directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' -[ 28%] Building CXX object CMakeFiles/cif2pdb.dir/src/cif2pdb.cpp.o -make[3]: Leaving directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' -make -f CMakeFiles/cif-diff.dir/build.make CMakeFiles/cif-diff.dir/build -Deleting primary custom command output 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-DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -g -O2 -ffile-prefix-map=/build/cif-tools-1.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/cif-grep.dir/src/cif-grep.cpp.o -MF CMakeFiles/cif-grep.dir/src/cif-grep.cpp.o.d -o CMakeFiles/cif-grep.dir/src/cif-grep.cpp.o -c /build/cif-tools-1.0.7/src/cif-grep.cpp -[ 53%] Building CXX object CMakeFiles/mmCQL.dir/src/mmCQL.cpp.o +[ 50%] Building CXX object CMakeFiles/mmCQL.dir/src/mmCQL.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -g -O2 -ffile-prefix-map=/build/cif-tools-1.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/mmCQL.dir/src/mmCQL.cpp.o -MF 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/build/cif-tools-1.0.7/src/pr-main.cpp +[ 75%] Generating cif-grep_rsrc.obj, ALL +/usr/bin/mrc -o /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/cif-grep_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic [ 78%] Building CXX object CMakeFiles/pdb2cif.dir/src/pr-main.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -g -O2 -ffile-prefix-map=/build/cif-tools-1.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/pdb2cif.dir/src/pr-main.cpp.o -MF CMakeFiles/pdb2cif.dir/src/pr-main.cpp.o.d -o CMakeFiles/pdb2cif.dir/src/pr-main.cpp.o -c /build/cif-tools-1.0.7/src/pr-main.cpp -[ 78%] Generating pdb2cif_rsrc.obj, ALL +[ 82%] Linking CXX executable cif-merge +/usr/bin/cmake -E cmake_link_script CMakeFiles/cif-merge.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cif-tools-1.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/cif-merge.dir/src/cif-merge.cpp.o" "CMakeFiles/cif-merge.dir/src/pr-main.cpp.o" "cif-merge_rsrc.obj" -o cif-merge /usr/lib/aarch64-linux-gnu/libcifpp.so.5.0.7.1 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.74.0 +make[3]: Leaving directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' +[ 82%] Built target cif-merge +[ 82%] Generating pdb2cif_rsrc.obj, ALL /usr/bin/mrc -o /build/cif-tools-1.0.7/obj-aarch64-linux-gnu/pdb2cif_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic -[ 82%] Linking CXX executable cif2pdb +[ 85%] Linking CXX executable cif2pdb /usr/bin/cmake -E cmake_link_script CMakeFiles/cif2pdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cif-tools-1.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now CMakeFiles/cif2pdb.dir/src/cif2pdb.cpp.o "CMakeFiles/cif2pdb.dir/src/pr-main.cpp.o" cif2pdb_rsrc.obj -o cif2pdb /usr/lib/aarch64-linux-gnu/libcifpp.so.5.0.7.1 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.74.0 -[ 85%] Linking CXX executable mmCQL -/usr/bin/cmake -E cmake_link_script CMakeFiles/mmCQL.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cif-tools-1.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now CMakeFiles/mmCQL.dir/src/mmCQL.cpp.o "CMakeFiles/mmCQL.dir/src/pr-main.cpp.o" mmCQL_rsrc.obj -o mmCQL 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mmCQL +[ 92%] Linking CXX executable cif-diff /usr/bin/cmake -E cmake_link_script CMakeFiles/cif-diff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cif-tools-1.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/cif-diff.dir/src/cif-diff.cpp.o" "CMakeFiles/cif-diff.dir/src/pr-main.cpp.o" "cif-diff_rsrc.obj" -o cif-diff /usr/lib/aarch64-linux-gnu/libcifpp.so.5.0.7.1 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.74.0 make[3]: Leaving directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' -[ 89%] Built target cif-diff -[ 92%] Linking CXX executable cif-merge -/usr/bin/cmake -E cmake_link_script CMakeFiles/cif-merge.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cif-tools-1.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/cif-merge.dir/src/cif-merge.cpp.o" "CMakeFiles/cif-merge.dir/src/pr-main.cpp.o" "cif-merge_rsrc.obj" -o cif-merge /usr/lib/aarch64-linux-gnu/libcifpp.so.5.0.7.1 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.74.0 +[ 92%] Built target cif-diff [ 96%] Linking CXX executable pdb2cif /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2cif.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cif-tools-1.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2cif.dir/src/pdb2cif.cpp.o "CMakeFiles/pdb2cif.dir/src/pr-main.cpp.o" pdb2cif_rsrc.obj -o pdb2cif /usr/lib/aarch64-linux-gnu/libcifpp.so.5.0.7.1 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.74.0 make[3]: Leaving directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' -[ 96%] Built target cif-merge -make[3]: Leaving directory '/build/cif-tools-1.0.7/obj-aarch64-linux-gnu' [ 96%] Built target pdb2cif [100%] Linking CXX executable cif-grep /usr/bin/cmake -E cmake_link_script CMakeFiles/cif-grep.dir/link.txt --verbose=1 @@ -693,8 +734,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'cif-tools' in '../cif-tools_1.0.7-1_arm64.deb'. dpkg-deb: building package 'cif-tools-dbgsym' in '../cif-tools-dbgsym_1.0.7-1_arm64.deb'. +dpkg-deb: building package 'cif-tools' in '../cif-tools_1.0.7-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../cif-tools_1.0.7-1_arm64.buildinfo dpkg-genchanges --build=binary -O../cif-tools_1.0.7-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -702,12 +743,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/22262/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/22262/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/15860 and its subdirectories -I: Current time: Thu May 11 03:13:50 -12 2023 -I: pbuilder-time-stamp: 1683818030 +I: removing directory /srv/workspace/pbuilder/22262 and its subdirectories +I: Current time: Thu Jun 13 11:41:28 +14 2024 +I: pbuilder-time-stamp: 1718228488