Diff of the two buildlogs: -- --- b1/build.log 2023-05-15 13:40:14.758739147 +0000 +++ b2/build.log 2023-05-15 13:48:37.040648654 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon May 15 01:29:54 -12 2023 -I: pbuilder-time-stamp: 1684157394 +I: Current time: Mon Jun 17 10:03:22 +14 2024 +I: pbuilder-time-stamp: 1718568202 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./cdk_2.8.orig.tar.gz] I: copying [./cdk_2.8-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Oct 10 19:14:11 2022 -12 +gpgv: Signature made Tue Oct 11 21:14:11 2022 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key @@ -28,52 +28,84 @@ dpkg-source: info: applying build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4221/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/11052/tmp/hooks/D01_modify_environment starting +debug: Running on codethink15-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 17 10:03 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/11052/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/11052/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4221' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=11052 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jjuQcAIB/pbuilderrc_C3Jh --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jjuQcAIB/b1 --logfile b1/build.log cdk_2.8-2.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jjuQcAIB/pbuilderrc_xh9N --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jjuQcAIB/b2 --logfile b2/build.log --extrapackages usrmerge cdk_2.8-2.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink12-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 14 22:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4221/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 15 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/11052/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -457,7 +489,7 @@ Get: 296 http://deb.debian.org/debian bookworm/main arm64 maven all 3.8.7-1 [18.9 kB] Get: 297 http://deb.debian.org/debian bookworm/main arm64 maven-repo-helper all 1.11 [142 kB] Get: 298 http://deb.debian.org/debian bookworm/main arm64 maven-debian-helper all 2.6.2 [108 kB] -Fetched 415 MB in 41s (10.2 MB/s) +Fetched 415 MB in 56s (7400 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -1851,8 +1883,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/cdk-2.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cdk_2.8-2_source.changes +I: user script /srv/workspace/pbuilder/11052/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/11052/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/cdk-2.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cdk_2.8-2_source.changes dpkg-buildpackage: info: source package cdk dpkg-buildpackage: info: source version 1:2.8-2 dpkg-buildpackage: info: source distribution unstable @@ -3338,10 +3379,10 @@ File "SMARTSParserVisitor.java" does not exist. Will create one. File "SMARTSParserDefaultVisitor.java" does not exist. Will create one. File "JJTSMARTSParserState.java" does not exist. Will create one. -Annotated grammar generated successfully in /build/cdk-2.8/legacy/target/javacc-1684157779309/node/SMARTSParser.jj +Annotated grammar generated successfully in /build/cdk-2.8/legacy/target/javacc-1718568523519/node/SMARTSParser.jj Java Compiler Compiler Version 7.0.12 (Parser Generator) (type "javacc" with no arguments for help) -Reading from file /build/cdk-2.8/legacy/target/javacc-1684157779309/node/SMARTSParser.jj . . . +Reading from file /build/cdk-2.8/legacy/target/javacc-1718568523519/node/SMARTSParser.jj . . . File "TokenMgrError.java" does not exist. Will create one. File "ParseException.java" does not exist. Will create one. File "Token.java" does not exist. Will create one. @@ -3406,72 +3447,72 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for cdk 2.8: [INFO] -[INFO] cdk ................................................ SUCCESS [ 0.031 s] -[INFO] cdk-base ........................................... SUCCESS [ 0.001 s] -[INFO] cdk-interfaces ..................................... SUCCESS [ 23.235 s] -[INFO] cdk-core ........................................... SUCCESS [ 25.868 s] -[INFO] cdk-standard ....................................... SUCCESS [ 19.681 s] -[INFO] cdk-atomtype ....................................... SUCCESS [ 1.216 s] -[INFO] cdk-valencycheck ................................... SUCCESS [ 1.654 s] -[INFO] cdk-data ........................................... SUCCESS [ 10.292 s] -[INFO] cdk-silent ......................................... SUCCESS [ 6.860 s] -[INFO] cdk-datadebug ...................................... SUCCESS [ 6.972 s] -[INFO] cdk-isomorphism .................................... SUCCESS [ 4.941 s] -[INFO] cdk-dict ........................................... SUCCESS [ 1.239 s] -[INFO] cdk-reaction ....................................... SUCCESS [ 4.744 s] +[INFO] cdk ................................................ SUCCESS [ 0.010 s] +[INFO] cdk-base ........................................... SUCCESS [ 0.005 s] +[INFO] cdk-interfaces ..................................... SUCCESS [ 14.951 s] +[INFO] cdk-core ........................................... SUCCESS [ 17.885 s] +[INFO] cdk-standard ....................................... SUCCESS [ 13.283 s] +[INFO] cdk-atomtype ....................................... SUCCESS [ 0.880 s] +[INFO] cdk-valencycheck ................................... SUCCESS [ 1.243 s] +[INFO] cdk-data ........................................... SUCCESS [ 8.139 s] +[INFO] cdk-silent ......................................... SUCCESS [ 5.631 s] +[INFO] cdk-datadebug ...................................... SUCCESS [ 5.134 s] +[INFO] cdk-isomorphism .................................... SUCCESS [ 4.266 s] +[INFO] cdk-dict ........................................... SUCCESS [ 1.019 s] +[INFO] cdk-reaction ....................................... SUCCESS [ 3.040 s] [INFO] cdk-storage ........................................ SUCCESS [ 0.001 s] -[INFO] cdk-ioformats ...................................... SUCCESS [ 2.648 s] -[INFO] cdk-ctab ........................................... SUCCESS [ 5.167 s] -[INFO] cdk-tool ........................................... SUCCESS [ 0.001 s] -[INFO] cdk-smarts ......................................... SUCCESS [ 2.767 s] -[INFO] cdk-formula ........................................ SUCCESS [ 2.946 s] -[INFO] cdk-descriptor ..................................... SUCCESS [ 0.049 s] -[INFO] cdk-fingerprint .................................... SUCCESS [ 3.049 s] -[INFO] cdk-cip ............................................ SUCCESS [ 0.769 s] -[INFO] cdk-signature ...................................... SUCCESS [ 0.680 s] -[INFO] cdk-qsar ........................................... SUCCESS [ 0.635 s] -[INFO] cdk-charges ........................................ SUCCESS [ 1.397 s] -[INFO] cdk-forcefield ..................................... SUCCESS [ 2.272 s] -[INFO] cdk-qsaratomic ..................................... SUCCESS [ 2.814 s] -[INFO] cdk-qsarbond ....................................... SUCCESS [ 0.857 s] -[INFO] cdk-io ............................................. SUCCESS [ 7.400 s] -[INFO] cdk-libiocml ....................................... SUCCESS [ 2.324 s] -[INFO] cdk-qsarcml ........................................ SUCCESS [ 0.720 s] -[INFO] cdk-smiles ......................................... SUCCESS [ 3.502 s] -[INFO] cdk-hash ........................................... SUCCESS [ 2.145 s] -[INFO] cdk-fragment ....................................... SUCCESS [ 0.683 s] -[INFO] cdk-qsarmolecular .................................. SUCCESS [ 7.209 s] -[INFO] cdk-pdb ............................................ SUCCESS [ 2.312 s] -[INFO] cdk-qsarprotein .................................... SUCCESS [ 0.644 s] -[INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.420 s] +[INFO] cdk-ioformats ...................................... SUCCESS [ 1.635 s] +[INFO] cdk-ctab ........................................... SUCCESS [ 4.085 s] +[INFO] cdk-tool ........................................... SUCCESS [ 0.007 s] +[INFO] cdk-smarts ......................................... SUCCESS [ 1.352 s] +[INFO] cdk-formula ........................................ SUCCESS [ 1.798 s] +[INFO] cdk-descriptor ..................................... SUCCESS [ 0.001 s] +[INFO] cdk-fingerprint .................................... SUCCESS [ 2.373 s] +[INFO] cdk-cip ............................................ SUCCESS [ 0.711 s] +[INFO] cdk-signature ...................................... SUCCESS [ 0.556 s] +[INFO] cdk-qsar ........................................... SUCCESS [ 0.384 s] +[INFO] cdk-charges ........................................ SUCCESS [ 1.072 s] +[INFO] cdk-forcefield ..................................... SUCCESS [ 1.665 s] +[INFO] cdk-qsaratomic ..................................... SUCCESS [ 1.641 s] +[INFO] cdk-qsarbond ....................................... SUCCESS [ 0.638 s] +[INFO] cdk-io ............................................. SUCCESS [ 3.712 s] +[INFO] cdk-libiocml ....................................... SUCCESS [ 1.600 s] +[INFO] cdk-qsarcml ........................................ SUCCESS [ 0.600 s] +[INFO] cdk-smiles ......................................... SUCCESS [ 2.102 s] +[INFO] cdk-hash ........................................... SUCCESS [ 1.013 s] +[INFO] cdk-fragment ....................................... SUCCESS [ 0.489 s] +[INFO] cdk-qsarmolecular .................................. SUCCESS [ 4.136 s] +[INFO] cdk-pdb ............................................ SUCCESS [ 1.837 s] +[INFO] cdk-qsarprotein .................................... SUCCESS [ 0.492 s] +[INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.254 s] [INFO] cdk-display ........................................ SUCCESS [ 0.001 s] -[INFO] cdk-render ......................................... SUCCESS [ 1.424 s] -[INFO] cdk-renderbasic .................................... SUCCESS [ 5.360 s] -[INFO] cdk-renderawt ...................................... SUCCESS [ 0.663 s] -[INFO] cdk-renderextra .................................... SUCCESS [ 2.085 s] -[INFO] cdk-misc ........................................... SUCCESS [ 0.009 s] -[INFO] cdk-control ........................................ SUCCESS [ 0.666 s] -[INFO] cdk-extra .......................................... SUCCESS [ 5.055 s] -[INFO] cdk-diff ........................................... SUCCESS [ 1.125 s] -[INFO] cdk-log4j .......................................... SUCCESS [ 0.728 s] -[INFO] cdk-slf4j .......................................... SUCCESS [ 0.620 s] -[INFO] cdk-libiomd ........................................ SUCCESS [ 1.300 s] -[INFO] cdk-pdbcml ......................................... SUCCESS [ 0.993 s] -[INFO] cdk-sdg ............................................ SUCCESS [ 5.290 s] -[INFO] cdk-builder3d ...................................... SUCCESS [ 2.150 s] -[INFO] cdk-builder3dtools ................................. SUCCESS [ 0.511 s] -[INFO] cdk-group .......................................... SUCCESS [ 1.167 s] -[INFO] cdk-pcore .......................................... SUCCESS [ 1.589 s] -[INFO] cdk-structgen ...................................... SUCCESS [ 2.380 s] -[INFO] cdk-model .......................................... SUCCESS [ 0.619 s] -[INFO] cdk-legacy ......................................... SUCCESS [ 22.680 s] +[INFO] cdk-render ......................................... SUCCESS [ 0.865 s] +[INFO] cdk-renderbasic .................................... SUCCESS [ 2.639 s] +[INFO] cdk-renderawt ...................................... SUCCESS [ 0.670 s] +[INFO] cdk-renderextra .................................... SUCCESS [ 0.937 s] +[INFO] cdk-misc ........................................... SUCCESS [ 0.001 s] +[INFO] cdk-control ........................................ SUCCESS [ 0.326 s] +[INFO] cdk-extra .......................................... SUCCESS [ 2.098 s] +[INFO] cdk-diff ........................................... SUCCESS [ 0.718 s] +[INFO] cdk-log4j .......................................... SUCCESS [ 0.503 s] +[INFO] cdk-slf4j .......................................... SUCCESS [ 0.285 s] +[INFO] cdk-libiomd ........................................ SUCCESS [ 0.540 s] +[INFO] cdk-pdbcml ......................................... SUCCESS [ 0.393 s] +[INFO] cdk-sdg ............................................ SUCCESS [ 2.705 s] +[INFO] cdk-builder3d ...................................... SUCCESS [ 1.276 s] +[INFO] cdk-builder3dtools ................................. SUCCESS [ 0.414 s] +[INFO] cdk-group .......................................... SUCCESS [ 0.700 s] +[INFO] cdk-pcore .......................................... SUCCESS [ 0.688 s] +[INFO] cdk-structgen ...................................... SUCCESS [ 1.552 s] +[INFO] cdk-model .......................................... SUCCESS [ 0.480 s] +[INFO] cdk-legacy ......................................... SUCCESS [ 13.996 s] [INFO] cdk-app ............................................ SUCCESS [ 0.001 s] -[INFO] cdk-depict ......................................... SUCCESS [ 2.656 s] +[INFO] cdk-depict ......................................... SUCCESS [ 1.851 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 03:43 min -[INFO] Finished at: 2023-05-15T01:36:40-12:00 +[INFO] Total time: 02:26 min +[INFO] Finished at: 2024-06-17T10:08:56+14:00 [INFO] ------------------------------------------------------------------------  dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/cdk-2.8 -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/build/cdk-2.8/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/cdk-2.8/debian -Dmaven.repo.local=/build/cdk-2.8/debian/maven-repo --batch-mode test @@ -4660,72 +4701,72 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for cdk 2.8: [INFO] -[INFO] cdk ................................................ SUCCESS [ 0.013 s] -[INFO] cdk-base ........................................... SUCCESS [ 0.002 s] -[INFO] cdk-interfaces ..................................... SUCCESS [ 4.222 s] -[INFO] cdk-core ........................................... SUCCESS [ 0.290 s] -[INFO] cdk-standard ....................................... SUCCESS [ 0.236 s] -[INFO] cdk-atomtype ....................................... SUCCESS [ 0.152 s] -[INFO] cdk-valencycheck ................................... SUCCESS [ 0.226 s] -[INFO] cdk-data ........................................... SUCCESS [ 0.177 s] -[INFO] cdk-silent ......................................... SUCCESS [ 0.167 s] -[INFO] cdk-datadebug ...................................... SUCCESS [ 0.168 s] -[INFO] cdk-isomorphism .................................... SUCCESS [ 0.178 s] -[INFO] cdk-dict ........................................... SUCCESS [ 0.204 s] -[INFO] cdk-reaction ....................................... SUCCESS [ 0.151 s] +[INFO] cdk ................................................ SUCCESS [ 0.014 s] +[INFO] cdk-base ........................................... SUCCESS [ 0.006 s] +[INFO] cdk-interfaces ..................................... SUCCESS [ 2.821 s] +[INFO] cdk-core ........................................... SUCCESS [ 0.287 s] +[INFO] cdk-standard ....................................... SUCCESS [ 0.170 s] +[INFO] cdk-atomtype ....................................... SUCCESS [ 0.112 s] +[INFO] cdk-valencycheck ................................... SUCCESS [ 0.129 s] +[INFO] cdk-data ........................................... SUCCESS [ 0.126 s] +[INFO] cdk-silent ......................................... SUCCESS [ 0.234 s] +[INFO] cdk-datadebug ...................................... SUCCESS [ 0.155 s] +[INFO] cdk-isomorphism .................................... SUCCESS [ 0.139 s] +[INFO] cdk-dict ........................................... SUCCESS [ 0.157 s] +[INFO] cdk-reaction ....................................... SUCCESS [ 0.134 s] [INFO] cdk-storage ........................................ SUCCESS [ 0.001 s] -[INFO] cdk-ioformats ...................................... SUCCESS [ 0.141 s] -[INFO] cdk-ctab ........................................... SUCCESS [ 0.129 s] +[INFO] cdk-ioformats ...................................... SUCCESS [ 0.128 s] +[INFO] cdk-ctab ........................................... SUCCESS [ 0.104 s] [INFO] cdk-tool ........................................... SUCCESS [ 0.001 s] -[INFO] cdk-smarts ......................................... SUCCESS [ 0.127 s] -[INFO] cdk-formula ........................................ SUCCESS [ 0.138 s] -[INFO] cdk-descriptor ..................................... SUCCESS [ 0.000 s] -[INFO] cdk-fingerprint .................................... SUCCESS [ 0.327 s] -[INFO] cdk-cip ............................................ SUCCESS [ 0.118 s] -[INFO] cdk-signature ...................................... SUCCESS [ 0.127 s] -[INFO] cdk-qsar ........................................... SUCCESS [ 0.114 s] -[INFO] cdk-charges ........................................ SUCCESS [ 0.152 s] -[INFO] cdk-forcefield ..................................... SUCCESS [ 0.206 s] -[INFO] cdk-qsaratomic ..................................... SUCCESS [ 0.176 s] -[INFO] cdk-qsarbond ....................................... SUCCESS [ 0.251 s] -[INFO] cdk-io ............................................. SUCCESS [ 26.456 s] -[INFO] cdk-libiocml ....................................... SUCCESS [ 3.511 s] -[INFO] cdk-qsarcml ........................................ SUCCESS [ 1.063 s] -[INFO] cdk-smiles ......................................... SUCCESS [ 0.185 s] -[INFO] cdk-hash ........................................... SUCCESS [ 0.124 s] -[INFO] cdk-fragment ....................................... SUCCESS [ 0.139 s] -[INFO] cdk-qsarmolecular .................................. SUCCESS [ 0.347 s] -[INFO] cdk-pdb ............................................ SUCCESS [ 4.255 s] -[INFO] cdk-qsarprotein .................................... SUCCESS [ 0.957 s] -[INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.138 s] -[INFO] cdk-display ........................................ SUCCESS [ 0.000 s] -[INFO] cdk-render ......................................... SUCCESS [ 0.122 s] -[INFO] cdk-renderbasic .................................... SUCCESS [ 0.151 s] -[INFO] cdk-renderawt ...................................... SUCCESS [ 0.115 s] -[INFO] cdk-renderextra .................................... SUCCESS [ 0.126 s] +[INFO] cdk-smarts ......................................... SUCCESS [ 0.105 s] +[INFO] cdk-formula ........................................ SUCCESS [ 0.092 s] +[INFO] cdk-descriptor ..................................... SUCCESS [ 0.001 s] +[INFO] cdk-fingerprint .................................... SUCCESS [ 0.234 s] +[INFO] cdk-cip ............................................ SUCCESS [ 0.095 s] +[INFO] cdk-signature ...................................... SUCCESS [ 0.101 s] +[INFO] cdk-qsar ........................................... SUCCESS [ 0.089 s] +[INFO] cdk-charges ........................................ SUCCESS [ 0.134 s] +[INFO] cdk-forcefield ..................................... SUCCESS [ 0.147 s] +[INFO] cdk-qsaratomic ..................................... SUCCESS [ 0.196 s] +[INFO] cdk-qsarbond ....................................... SUCCESS [ 0.128 s] +[INFO] cdk-io ............................................. SUCCESS [ 19.895 s] +[INFO] cdk-libiocml ....................................... SUCCESS [ 2.622 s] +[INFO] cdk-qsarcml ........................................ SUCCESS [ 1.039 s] +[INFO] cdk-smiles ......................................... SUCCESS [ 0.180 s] +[INFO] cdk-hash ........................................... SUCCESS [ 0.083 s] +[INFO] cdk-fragment ....................................... SUCCESS [ 0.129 s] +[INFO] cdk-qsarmolecular .................................. SUCCESS [ 0.219 s] +[INFO] cdk-pdb ............................................ SUCCESS [ 2.224 s] +[INFO] cdk-qsarprotein .................................... SUCCESS [ 0.695 s] +[INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.105 s] +[INFO] cdk-display ........................................ SUCCESS [ 0.001 s] +[INFO] cdk-render ......................................... SUCCESS [ 0.083 s] +[INFO] cdk-renderbasic .................................... SUCCESS [ 0.101 s] +[INFO] cdk-renderawt ...................................... SUCCESS [ 0.108 s] +[INFO] cdk-renderextra .................................... SUCCESS [ 0.111 s] [INFO] cdk-misc ........................................... SUCCESS [ 0.001 s] -[INFO] cdk-control ........................................ SUCCESS [ 0.054 s] -[INFO] cdk-extra .......................................... SUCCESS [ 8.039 s] -[INFO] cdk-diff ........................................... SUCCESS [ 0.099 s] -[INFO] cdk-log4j .......................................... SUCCESS [ 0.085 s] -[INFO] cdk-slf4j .......................................... SUCCESS [ 0.094 s] -[INFO] cdk-libiomd ........................................ SUCCESS [ 1.074 s] -[INFO] cdk-pdbcml ......................................... SUCCESS [ 0.968 s] -[INFO] cdk-sdg ............................................ SUCCESS [ 8.067 s] -[INFO] cdk-builder3d ...................................... SUCCESS [ 2.253 s] -[INFO] cdk-builder3dtools ................................. SUCCESS [ 0.183 s] -[INFO] cdk-group .......................................... SUCCESS [ 0.124 s] -[INFO] cdk-pcore .......................................... SUCCESS [ 0.156 s] -[INFO] cdk-structgen ...................................... SUCCESS [ 0.151 s] -[INFO] cdk-model .......................................... SUCCESS [ 0.135 s] -[INFO] cdk-legacy ......................................... SUCCESS [ 37.639 s] +[INFO] cdk-control ........................................ SUCCESS [ 0.057 s] +[INFO] cdk-extra .......................................... SUCCESS [ 5.419 s] +[INFO] cdk-diff ........................................... SUCCESS [ 0.055 s] +[INFO] cdk-log4j .......................................... SUCCESS [ 0.057 s] +[INFO] cdk-slf4j .......................................... SUCCESS [ 0.062 s] +[INFO] cdk-libiomd ........................................ SUCCESS [ 0.577 s] +[INFO] cdk-pdbcml ......................................... SUCCESS [ 0.447 s] +[INFO] cdk-sdg ............................................ SUCCESS [ 6.251 s] +[INFO] cdk-builder3d ...................................... SUCCESS [ 1.342 s] +[INFO] cdk-builder3dtools ................................. SUCCESS [ 0.079 s] +[INFO] cdk-group .......................................... SUCCESS [ 0.062 s] +[INFO] cdk-pcore .......................................... SUCCESS [ 0.106 s] +[INFO] cdk-structgen ...................................... SUCCESS [ 0.158 s] +[INFO] cdk-model .......................................... SUCCESS [ 0.110 s] +[INFO] cdk-legacy ......................................... SUCCESS [ 16.438 s] [INFO] cdk-app ............................................ SUCCESS [ 0.001 s] -[INFO] cdk-depict ......................................... SUCCESS [ 5.356 s] +[INFO] cdk-depict ......................................... SUCCESS [ 2.669 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 01:53 min -[INFO] Finished at: 2023-05-15T01:38:40-12:00 +[INFO] Total time: 01:10 min +[INFO] Finished at: 2024-06-17T10:10:13+14:00 [INFO] ------------------------------------------------------------------------  create-stamp debian/debhelper-build-stamp dh_prep @@ -5527,72 +5568,72 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for cdk 2.8: [INFO] -[INFO] cdk ................................................ SUCCESS [ 3.156 s] -[INFO] cdk-base ........................................... SUCCESS [ 0.322 s] -[INFO] cdk-interfaces ..................................... SUCCESS [ 0.841 s] -[INFO] cdk-core ........................................... SUCCESS [ 0.386 s] -[INFO] cdk-standard ....................................... SUCCESS [ 0.510 s] -[INFO] cdk-atomtype ....................................... SUCCESS [ 0.331 s] -[INFO] cdk-valencycheck ................................... SUCCESS [ 0.285 s] -[INFO] cdk-data ........................................... SUCCESS [ 0.393 s] -[INFO] cdk-silent ......................................... SUCCESS [ 0.454 s] -[INFO] cdk-datadebug ...................................... SUCCESS [ 0.360 s] -[INFO] cdk-isomorphism .................................... SUCCESS [ 0.393 s] -[INFO] cdk-dict ........................................... SUCCESS [ 0.388 s] -[INFO] cdk-reaction ....................................... SUCCESS [ 0.369 s] -[INFO] cdk-storage ........................................ SUCCESS [ 0.279 s] -[INFO] cdk-ioformats ...................................... SUCCESS [ 0.300 s] -[INFO] cdk-ctab ........................................... SUCCESS [ 0.408 s] -[INFO] cdk-tool ........................................... SUCCESS [ 0.168 s] -[INFO] cdk-smarts ......................................... SUCCESS [ 0.217 s] -[INFO] cdk-formula ........................................ SUCCESS [ 0.233 s] -[INFO] cdk-descriptor ..................................... SUCCESS [ 0.166 s] -[INFO] cdk-fingerprint .................................... SUCCESS [ 0.174 s] -[INFO] cdk-cip ............................................ SUCCESS [ 0.207 s] -[INFO] cdk-signature ...................................... SUCCESS [ 0.135 s] -[INFO] cdk-qsar ........................................... SUCCESS [ 0.161 s] -[INFO] cdk-charges ........................................ SUCCESS [ 0.158 s] -[INFO] cdk-forcefield ..................................... SUCCESS [ 0.139 s] -[INFO] cdk-qsaratomic ..................................... SUCCESS [ 0.177 s] -[INFO] cdk-qsarbond ....................................... SUCCESS [ 0.185 s] -[INFO] cdk-io ............................................. SUCCESS [ 0.248 s] -[INFO] cdk-libiocml ....................................... SUCCESS [ 0.224 s] -[INFO] cdk-qsarcml ........................................ SUCCESS [ 0.216 s] -[INFO] cdk-smiles ......................................... SUCCESS [ 0.233 s] -[INFO] cdk-hash ........................................... SUCCESS [ 0.262 s] -[INFO] cdk-fragment ....................................... SUCCESS [ 0.348 s] -[INFO] cdk-qsarmolecular .................................. SUCCESS [ 0.285 s] -[INFO] cdk-pdb ............................................ SUCCESS [ 0.268 s] -[INFO] cdk-qsarprotein .................................... SUCCESS [ 0.248 s] -[INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.224 s] -[INFO] cdk-display ........................................ SUCCESS [ 0.127 s] -[INFO] cdk-render ......................................... SUCCESS [ 0.192 s] -[INFO] cdk-renderbasic .................................... SUCCESS [ 0.233 s] -[INFO] cdk-renderawt ...................................... SUCCESS [ 0.248 s] -[INFO] cdk-renderextra .................................... SUCCESS [ 0.191 s] -[INFO] cdk-misc ........................................... SUCCESS [ 0.115 s] -[INFO] cdk-control ........................................ SUCCESS [ 0.127 s] -[INFO] cdk-extra .......................................... SUCCESS [ 0.159 s] -[INFO] cdk-diff ........................................... SUCCESS [ 0.206 s] -[INFO] cdk-log4j .......................................... SUCCESS [ 0.252 s] -[INFO] cdk-slf4j .......................................... SUCCESS [ 0.147 s] -[INFO] cdk-libiomd ........................................ SUCCESS [ 0.146 s] -[INFO] cdk-pdbcml ......................................... SUCCESS [ 0.165 s] -[INFO] cdk-sdg ............................................ SUCCESS [ 0.199 s] -[INFO] cdk-builder3d ...................................... SUCCESS [ 0.175 s] -[INFO] cdk-builder3dtools ................................. SUCCESS [ 0.141 s] -[INFO] cdk-group .......................................... SUCCESS [ 0.186 s] -[INFO] cdk-pcore .......................................... SUCCESS [ 0.140 s] -[INFO] cdk-structgen ...................................... SUCCESS [ 0.156 s] -[INFO] cdk-model .......................................... SUCCESS [ 0.126 s] +[INFO] cdk ................................................ SUCCESS [ 2.193 s] +[INFO] cdk-base ........................................... SUCCESS [ 0.247 s] +[INFO] cdk-interfaces ..................................... SUCCESS [ 0.417 s] +[INFO] cdk-core ........................................... SUCCESS [ 0.264 s] +[INFO] cdk-standard ....................................... SUCCESS [ 0.268 s] +[INFO] cdk-atomtype ....................................... SUCCESS [ 0.184 s] +[INFO] cdk-valencycheck ................................... SUCCESS [ 0.179 s] +[INFO] cdk-data ........................................... SUCCESS [ 0.214 s] +[INFO] cdk-silent ......................................... SUCCESS [ 0.208 s] +[INFO] cdk-datadebug ...................................... SUCCESS [ 0.244 s] +[INFO] cdk-isomorphism .................................... SUCCESS [ 0.247 s] +[INFO] cdk-dict ........................................... SUCCESS [ 0.244 s] +[INFO] cdk-reaction ....................................... SUCCESS [ 0.264 s] +[INFO] cdk-storage ........................................ SUCCESS [ 0.160 s] +[INFO] cdk-ioformats ...................................... SUCCESS [ 0.188 s] +[INFO] cdk-ctab ........................................... SUCCESS [ 0.201 s] +[INFO] cdk-tool ........................................... SUCCESS [ 0.121 s] +[INFO] cdk-smarts ......................................... SUCCESS [ 0.153 s] +[INFO] cdk-formula ........................................ SUCCESS [ 0.130 s] +[INFO] cdk-descriptor ..................................... SUCCESS [ 0.107 s] +[INFO] cdk-fingerprint .................................... SUCCESS [ 0.147 s] +[INFO] cdk-cip ............................................ SUCCESS [ 0.176 s] +[INFO] cdk-signature ...................................... SUCCESS [ 0.140 s] +[INFO] cdk-qsar ........................................... SUCCESS [ 0.172 s] +[INFO] cdk-charges ........................................ SUCCESS [ 0.128 s] +[INFO] cdk-forcefield ..................................... SUCCESS [ 0.128 s] +[INFO] cdk-qsaratomic ..................................... SUCCESS [ 0.220 s] +[INFO] cdk-qsarbond ....................................... SUCCESS [ 0.216 s] +[INFO] cdk-io ............................................. SUCCESS [ 0.268 s] +[INFO] cdk-libiocml ....................................... SUCCESS [ 0.239 s] +[INFO] cdk-qsarcml ........................................ SUCCESS [ 0.280 s] +[INFO] cdk-smiles ......................................... SUCCESS [ 0.252 s] +[INFO] cdk-hash ........................................... SUCCESS [ 0.192 s] +[INFO] cdk-fragment ....................................... SUCCESS [ 0.152 s] +[INFO] cdk-qsarmolecular .................................. SUCCESS [ 0.153 s] +[INFO] cdk-pdb ............................................ SUCCESS [ 0.178 s] +[INFO] cdk-qsarprotein .................................... SUCCESS [ 0.177 s] +[INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.129 s] +[INFO] cdk-display ........................................ SUCCESS [ 0.096 s] +[INFO] cdk-render ......................................... SUCCESS [ 0.135 s] +[INFO] cdk-renderbasic .................................... SUCCESS [ 0.143 s] +[INFO] cdk-renderawt ...................................... SUCCESS [ 0.145 s] +[INFO] cdk-renderextra .................................... SUCCESS [ 0.164 s] +[INFO] cdk-misc ........................................... SUCCESS [ 0.096 s] +[INFO] cdk-control ........................................ SUCCESS [ 0.109 s] +[INFO] cdk-extra .......................................... SUCCESS [ 0.201 s] +[INFO] cdk-diff ........................................... SUCCESS [ 0.131 s] +[INFO] cdk-log4j .......................................... SUCCESS [ 0.113 s] +[INFO] cdk-slf4j .......................................... SUCCESS [ 0.099 s] +[INFO] cdk-libiomd ........................................ SUCCESS [ 0.112 s] +[INFO] cdk-pdbcml ......................................... SUCCESS [ 0.144 s] +[INFO] cdk-sdg ............................................ SUCCESS [ 0.156 s] +[INFO] cdk-builder3d ...................................... SUCCESS [ 0.145 s] +[INFO] cdk-builder3dtools ................................. SUCCESS [ 0.143 s] +[INFO] cdk-group .......................................... SUCCESS [ 0.138 s] +[INFO] cdk-pcore .......................................... SUCCESS [ 0.120 s] +[INFO] cdk-structgen ...................................... SUCCESS [ 0.113 s] +[INFO] cdk-model .......................................... SUCCESS [ 0.111 s] [INFO] cdk-legacy ......................................... SUCCESS [ 0.126 s] -[INFO] cdk-app ............................................ SUCCESS [ 0.083 s] -[INFO] cdk-depict ......................................... SUCCESS [ 0.144 s] +[INFO] cdk-app ............................................ SUCCESS [ 0.086 s] +[INFO] cdk-depict ......................................... SUCCESS [ 0.147 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 22.213 s -[INFO] Finished at: 2023-05-15T01:39:12-12:00 +[INFO] Total time: 15.209 s +[INFO] Finished at: 2024-06-17T10:10:36+14:00 [INFO] ------------------------------------------------------------------------  mh_resolve_dependencies --non-interactive --offline --build -plibcdk-java --base-directory=/build/cdk-2.8 --non-explore Analysing pom.xml... @@ -5718,12 +5759,12 @@ > dpkg --search /usr/share/maven-repo/com/googlecode/maven-java-formatter-plugin/maven-java-formatter-plugin/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/com/googlecode/maven-java-formatter-plugin/maven-java-formatter-plugin -May 15, 2023 1:39:30 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Jun 17, 2024 10:10:52 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/cdk-2.8/pom.xml: Dependency not found com.googlecode.maven-java-formatter-plugin:maven-java-formatter-plugin:maven-plugin:0.4 > dpkg --search /usr/share/maven-repo/org/openscience/cdk/cdk-build-utils/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/org/openscience/cdk/cdk-build-utils -May 15, 2023 1:39:36 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Jun 17, 2024 10:10:57 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/cdk-2.8/pom.xml: Dependency not found org.openscience.cdk:cdk-build-utils:jar:debian > dpkg --search /usr/share/maven-repo/jgrapht/jgrapht/*/* Found /usr/share/maven-repo/jgrapht/jgrapht/debian/jgrapht-debian.pom in libjgrapht0.6-java @@ -5732,7 +5773,7 @@ [error] Package libjgrapht0.6-java (0.6.0) is already installed and contains a possible match, but I cannot resolve library jgrapht:jgrapht:jar:debian in it. [error] Please check manually that the library is up to date, otherwise it may be necessary to package version debian in Debian. -May 15, 2023 1:39:53 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Jun 17, 2024 10:11:14 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/cdk-2.8/legacy/pom.xml: Dependency not found jgrapht:jgrapht:jar:debian ERROR: pom.xml: plugin is not packaged in the Maven repository for Debian: com.googlecode.maven-java-formatter-plugin:maven-java-formatter-plugin:0.4 @@ -5763,12 +5804,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/11052/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/11052/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4221 and its subdirectories -I: Current time: Mon May 15 01:40:13 -12 2023 -I: pbuilder-time-stamp: 1684158013 +I: removing directory /srv/workspace/pbuilder/11052 and its subdirectories +I: Current time: Mon Jun 17 10:11:34 +14 2024 +I: pbuilder-time-stamp: 1718568694