Diff of the two buildlogs: -- --- b1/build.log 2023-04-23 05:49:33.168526534 +0000 +++ b2/build.log 2023-04-23 05:54:07.668380110 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Apr 22 17:46:00 -12 2023 -I: pbuilder-time-stamp: 1682228760 +I: Current time: Sun May 26 02:12:36 +14 2024 +I: pbuilder-time-stamp: 1716639156 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./capsule-nextflow_1.1.1+dfsg.orig.tar.xz] I: copying [./capsule-nextflow_1.1.1+dfsg-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Nov 6 10:02:27 2022 -12 +gpgv: Signature made Mon Nov 7 12:02:27 2022 +14 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./capsule-nextflow_1.1.1+dfsg-1.dsc: no acceptable signature found @@ -35,52 +35,84 @@ dpkg-source: info: applying skip_tests_touching_security_sensitive_fields.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4794/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/22741/tmp/hooks/D01_modify_environment starting +debug: Running on codethink13-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 26 02:12 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/22741/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/22741/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4794' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=22741 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.K54d8B9D/pbuilderrc_Ddyt --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.K54d8B9D/b1 --logfile b1/build.log capsule-nextflow_1.1.1+dfsg-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.K54d8B9D/pbuilderrc_tu3m --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.K54d8B9D/b2 --logfile b2/build.log --extrapackages usrmerge capsule-nextflow_1.1.1+dfsg-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink12-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 20 22:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4794/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 23 06:50 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/22741/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -311,7 +343,7 @@ Get: 179 http://deb.debian.org/debian bookworm/main arm64 libjacoco-java all 0.8.6-2 [621 kB] Get: 180 http://deb.debian.org/debian bookworm/main arm64 libjimfs-java all 1.1-6 [191 kB] Get: 181 http://deb.debian.org/debian bookworm/main arm64 libtruth-java all 0.39-1 [164 kB] -Fetched 372 MB in 33s (11.2 MB/s) +Fetched 372 MB in 29s (12.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -1236,8 +1268,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/22741/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/22741/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes dpkg-buildpackage: info: source package capsule-nextflow dpkg-buildpackage: info: source version 1.1.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1268,11 +1309,11 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.253 secs. -The client will now receive all logging from the daemon (pid: 7025). The daemon log file: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-7025.out.log -Daemon will be stopped at the end of the build stopping after processing +An attempt to start the daemon took 5.514 secs. +The client will now receive all logging from the daemon (pid: 2464). The daemon log file: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-2464.out.log Closing daemon's stdin at end of input. The daemon will no longer process any standard input. +Daemon will be stopped at the end of the build stopping after processing Using 8 worker leases. Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@31ae1563 Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@31ae1563 @@ -1302,28 +1343,28 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@350d6b6d +Creating new cache for annotation-processors, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f999807 Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar'] Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7176ad80 -Creating new cache for taskHistory, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@d5b3e9b -Creating new cache for outputFiles, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@de55221 -:capsule:compileJava (Thread[Task worker for ':',5,main]) started. -:capsule-util:compileJava (Thread[Task worker for ':' Thread 3,5,main]) started. -:capsule:compileJava +Creating new cache for taskHistory, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@b9cef9d +Creating new cache for outputFiles, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@ae6aedb +:capsule:compileJava (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':',5,main]) started. :capsule-util:compileJava -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.027 secs. -Putting task artifact state for task ':capsule:compileJava' into context took 0.031 secs. -Up-to-date check for task ':capsule:compileJava' took 0.085 secs. It is not up-to-date because: +:capsule:compileJava +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.083 secs. +Putting task artifact state for task ':capsule:compileJava' into context took 0.075 secs. +Up-to-date check for task ':capsule:compileJava' took 0.206 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileJava'. Compiling with JDK Java compiler API. -Up-to-date check for task ':capsule-util:compileJava' took 0.515 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:compileJava' took 0.649 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule-util:compileJava'. Compiling with JDK Java compiler API. warning: [options] source value 7 is obsolete and will be removed in a future release -warning: [options] source value 7 is obsolete and will be removed in a future release warning: [options] target value 7 is obsolete and will be removed in a future release +warning: [options] source value 7 is obsolete and will be removed in a future release warning: [options] target value 7 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. @@ -1338,60 +1379,60 @@ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 3 warnings -:capsule-util:compileJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 15.374 secs. -:capsule-util:processResources (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':',5,main]) completed. Took 20.136 secs. +:capsule-util:processResources (Thread[Task worker for ':',5,main]) started. :capsule-util:processResources Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:processResources' took 0.01 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:processResources' took 0.019 secs. It is not up-to-date because: No history is available. -:capsule-util:processResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.128 secs. -:capsule-util:classes (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.157 secs. +:capsule-util:classes (Thread[Task worker for ':',5,main]) started. :capsule-util:classes Skipping task ':capsule-util:classes' as it has no actions. -:capsule-util:classes (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.02 secs. -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:classes (Thread[Task worker for ':',5,main]) completed. Took 0.009 secs. +:capsule-util:debianMavenPom (Thread[Task worker for ':',5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:debianMavenPom' took 0.003 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:debianMavenPom' took 0.035 secs. It is not up-to-date because: No history is available. Note: /build/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 5 warnings -:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 15.78 secs. -:capsule:processResources (Thread[Task worker for ':',5,main]) started. +:capsule:compileJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 20.765 secs. +:capsule:processResources (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.023 secs. -:capsule:classes (Thread[Task worker for ':',5,main]) started. +:capsule:processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.024 secs. +:capsule:classes (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. -:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) started. +:capsule:classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.001 secs. +:capsule:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':capsule:debianMavenPom' took 0.004 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:debianMavenPom' took 0.055 secs. It is not up-to-date because: No history is available. Generating pom file /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/debian/capsule-util.pom Generating pom file /build/capsule-nextflow-1.1.1+dfsg/capsule/build/debian/capsule.pom -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.279 secs. -:capsule:jar (Thread[Task worker for ':',5,main]) started. +:capsule:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.338 secs. +:capsule:jar (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.572 secs. -:capsule-util:jar (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.849 secs. +:capsule-util:jar (Thread[Task worker for ':',5,main]) started. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Up-to-date check for task ':capsule:jar' took 0.033 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:jar' took 0.05 secs. It is not up-to-date because: No history is available. -Up-to-date check for task ':capsule-util:jar' took 0.107 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:jar' took 0.1 secs. It is not up-to-date because: No history is available. -:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.336 secs. -:capsule-util:jar (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.483 secs. +:capsule:jar (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.383 secs. +:capsule-util:jar (Thread[Task worker for ':',5,main]) completed. Took 0.585 secs. -BUILD SUCCESSFUL in 32s +BUILD SUCCESSFUL in 1m 0s 7 actionable tasks: 7 executed dh_auto_test -O--buildsystem=gradle mkdir -p .gradle/init.d @@ -1404,17 +1445,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 4.755 secs. -The client will now receive all logging from the daemon (pid: 12586). The daemon log file: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-12586.out.log +An attempt to start the daemon took 6.059 secs. +The client will now receive all logging from the daemon (pid: 14018). The daemon log file: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-14018.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 8 worker leases. -Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@51746c0f -Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@51746c0f -Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@7ec08578 +Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d368ae3 +Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d368ae3 +Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@66dfaae6 Starting Build -Creating new cache for metadata-1.1/results, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@3f9e676 +Creating new cache for metadata-1.1/results, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@760e7428 Settings evaluated using settings file '/build/capsule-nextflow-1.1.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/capsule-nextflow-1.1.1+dfsg/build.gradle'. Included projects: [root project 'capsule', project ':capsule', project ':capsule-util'] @@ -1432,84 +1473,84 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@2836fc50 +Creating new cache for annotation-processors, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1a438dab Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar', task ':capsule:compileTestJava', task ':capsule:processTestResources', task ':capsule:testClasses', task ':capsule:test', task ':capsule-util:compileTestJava', task ':capsule-util:processTestResources', task ':capsule-util:testClasses', task ':capsule-util:test'] -Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7ec08578 -Creating new cache for taskHistory, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@3c494fbc -Creating new cache for outputFiles, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@23e3d872 -:capsule:compileJava (Thread[Task worker for ':',5,main]) started. -:capsule:compileJava +Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@66dfaae6 +Creating new cache for taskHistory, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@33b6480c +Creating new cache for outputFiles, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@4732957c +:capsule:compileJava (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule-util:compileJava (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:compileJava -Putting task artifact state for task ':capsule:compileJava' into context took 0.083 secs. -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.082 secs. -Skipping task ':capsule:compileJava' as it is up-to-date (took 0.215 secs). +:capsule:compileJava +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.02 secs. +Putting task artifact state for task ':capsule:compileJava' into context took 0.027 secs. +Skipping task ':capsule:compileJava' as it is up-to-date (took 0.24 secs). :capsule:compileJava UP-TO-DATE -:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.536 secs. -:capsule:processResources (Thread[Task worker for ':',5,main]) started. +:capsule:compileJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.457 secs. +:capsule:processResources (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.103 secs. -:capsule:classes (Thread[Task worker for ':',5,main]) started. +:capsule:processResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.02 secs. +:capsule:classes (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. :capsule:classes UP-TO-DATE -:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.03 secs. -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) started. +:capsule:classes (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.012 secs. +:capsule:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:debianMavenPom -Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.023 secs. -Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.019 secs). +Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. +Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.02 secs). :capsule:debianMavenPom UP-TO-DATE -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.08 secs. -:capsule:jar (Thread[Task worker for ':',5,main]) started. +:capsule:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.032 secs. +:capsule:jar (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -Skipping task ':capsule:jar' as it is up-to-date (took 0.035 secs). +Skipping task ':capsule:jar' as it is up-to-date (took 0.041 secs). :capsule:jar UP-TO-DATE -:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.105 secs. -:capsule:processTestResources (Thread[Task worker for ':',5,main]) started. +:capsule:jar (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.061 secs. +:capsule:processTestResources (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:processTestResources Putting task artifact state for task ':capsule:processTestResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-1.1.1+dfsg/capsule/src/test/resources', not found Skipping task ':capsule:processTestResources' as it has no source files and no previous output files. :capsule:processTestResources NO-SOURCE -:capsule:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.022 secs. -Skipping task ':capsule-util:compileJava' as it is up-to-date (took 0.725 secs). +:capsule:processTestResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.012 secs. +Skipping task ':capsule-util:compileJava' as it is up-to-date (took 0.702 secs). :capsule-util:compileJava UP-TO-DATE -:capsule-util:compileJava (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.985 secs. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.884 secs. :capsule-util:processResources (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:processResources Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.049 secs). +Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.039 secs). :capsule-util:processResources UP-TO-DATE -:capsule-util:processResources (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.077 secs. +:capsule-util:processResources (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.06 secs. :capsule-util:classes (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:classes Skipping task ':capsule-util:classes' as it has no actions. :capsule-util:classes UP-TO-DATE -:capsule-util:classes (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.011 secs. +:capsule-util:classes (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.002 secs. :capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. -Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.024 secs). +Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.009 secs). :capsule-util:debianMavenPom UP-TO-DATE -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.034 secs. -:capsule-util:jar (Thread[Task worker for ':',5,main]) started. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.022 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Skipping task ':capsule-util:jar' as it is up-to-date (took 0.036 secs). +Skipping task ':capsule-util:jar' as it is up-to-date (took 0.026 secs). :capsule-util:jar UP-TO-DATE -:capsule-util:jar (Thread[Task worker for ':',5,main]) completed. Took 0.057 secs. -:capsule:compileTestJava (Thread[Task worker for ':',5,main]) started. +:capsule-util:jar (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.048 secs. +:capsule:compileTestJava (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:compileTestJava Putting task artifact state for task ':capsule:compileTestJava' into context took 0.0 secs. -:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:compileTestJava Putting task artifact state for task ':capsule-util:compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@39575f6f +Creating new cache for metadata-2.36/module-metadata, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@53befd17 Loading the Maven rules... Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x @@ -1520,6 +1561,7 @@ Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian Passing through com.google.jimfs:jimfs-parent:jar:debian + Passing through com.google.jimfs:jimfs-parent:jar:debian Ignoring org.jooq:joor:jar:0.9.6 Ignoring org.jooq:joor:jar:0.9.6 Passing through org.hamcrest:hamcrest:jar:debian @@ -1533,34 +1575,34 @@ Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian -Up-to-date check for task ':capsule-util:compileTestJava' took 7.383 secs. It is not up-to-date because: - No history is available. -Up-to-date check for task ':capsule:compileTestJava' took 7.464 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:compileTestJava' took 6.995 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule-util:compileTestJava'. -All input files are considered out-of-date for incremental task ':capsule:compileTestJava'. Compiling with JDK Java compiler API. +Up-to-date check for task ':capsule:compileTestJava' took 7.165 secs. It is not up-to-date because: + No history is available. +All input files are considered out-of-date for incremental task ':capsule:compileTestJava'. Compiling with JDK Java compiler API. warning: [options] source value 7 is obsolete and will be removed in a future release -warning: [options] source value 7 is obsolete and will be removed in a future release warning: [options] target value 7 is obsolete and will be removed in a future release +warning: [options] source value 7 is obsolete and will be removed in a future release warning: [options] target value 7 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 3 warnings -:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 15.553 secs. -:capsule-util:processTestResources (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 17.377 secs. +:capsule-util:processTestResources (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:processTestResources Putting task artifact state for task ':capsule-util:processTestResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-1.1.1+dfsg/capsule-util/src/test/resources', not found Skipping task ':capsule-util:processTestResources' as it has no source files and no previous output files. :capsule-util:processTestResources NO-SOURCE -:capsule-util:processTestResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.019 secs. -:capsule-util:testClasses (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:processTestResources (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.038 secs. +:capsule-util:testClasses (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:testClasses Skipping task ':capsule-util:testClasses' as it has no actions. -:capsule-util:testClasses (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.005 secs. -:capsule-util:test (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:testClasses (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.009 secs. +:capsule-util:test (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:test Putting task artifact state for task ':capsule-util:test' into context took 0.0 secs. Replacing org.jacoco:org.jacoco.agent:jar:0.7.9 -> org.jacoco:org.jacoco.agent:jar:debian @@ -1570,22 +1612,22 @@ Note: /build/capsule-nextflow-1.1.1+dfsg/capsule/src/test/java/MyCapsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 3 warnings -:capsule:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 16.93 secs. -:capsule:testClasses (Thread[Task worker for ':',5,main]) started. +:capsule:compileTestJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 19.351 secs. +:capsule:testClasses (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:testClasses Skipping task ':capsule:testClasses' as it has no actions. -:capsule:testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. -:capsule:test (Thread[Task worker for ':',5,main]) started. +:capsule:testClasses (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.012 secs. +:capsule:test (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:test Putting task artifact state for task ':capsule:test' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:test' took 0.941 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:test' took 1.795 secs. It is not up-to-date because: No history is available. -Up-to-date check for task ':capsule:test' took 0.093 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:test' took 0.299 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 2'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_bc1a9505e0683f49c4357991486dc83f/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath3624498328783643396txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' -Starting process 'Gradle Test Executor 1'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_bc1a9505e0683f49c4357991486dc83f/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath11405049305285390022txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' -Successfully started process 'Gradle Test Executor 2' +Starting process 'Gradle Test Executor 1'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_bc1a9505e0683f49c4357991486dc83f/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath10328953514271959890txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 2'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_bc1a9505e0683f49c4357991486dc83f/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath8596073348827091952txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' Successfully started process 'Gradle Test Executor 1' +Successfully started process 'Gradle Test Executor 2' Gradle Test Executor 2 started executing tests. Gradle Test Executor 1 started executing tests. Running test: Test testExtendClasspath(NextflowLoaderTest) @@ -1593,7 +1635,6 @@ Running test: Test testWrapperCapsuleAgent(CapsuleAgentTest) CapsuleAgentTest > testWrapperCapsuleAgent SKIPPED -Running test: Test testAddZip1(co.paralleluniverse.capsule.JarTest) Running test: Test testEmbeddedCaplet(CapsuleTest) CapsuleTest > testEmbeddedCaplet SKIPPED @@ -1613,6 +1654,7 @@ CapsuleTest > testNatives1 SKIPPED Running test: Test testNatives2(CapsuleTest) +Running test: Test testAddZip1(co.paralleluniverse.capsule.JarTest) CapsuleTest > testNatives2 SKIPPED Running test: Test testBootClassPathWithEmbeddedDeps(CapsuleTest) @@ -1631,6 +1673,11 @@ CapsuleTest > testEmbeddedArtifact SKIPPED Running test: Test testSystemProperties(CapsuleTest) +WARNING: A terminally deprecated method in java.lang.System has been called +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: System::setSecurityManager will be removed in a future release +Gradle Test Executor 2 finished executing tests. CapsuleTest > testSystemProperties SKIPPED Running test: Test testBootClassPath1(CapsuleTest) @@ -1676,7 +1723,6 @@ CapsuleTest > testParseCommandLineArguments SKIPPED Running test: Test testParseJavaVersion(CapsuleTest) -Gradle Test Executor 2 finished executing tests. CapsuleTest > testParseJavaVersion SKIPPED Running test: Test testReallyExecutableCapsule(CapsuleTest) @@ -1700,10 +1746,6 @@ Running test: Test testClassPath(CapsuleTest) CapsuleTest > testClassPath SKIPPED -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release Running test: Test testPathingJar(CapsuleTest) CapsuleTest > testPathingJar SKIPPED @@ -1725,10 +1767,10 @@ Running test: Test testApplicationArtifact(CapsuleTest) CapsuleTest > testApplicationArtifact SKIPPED -Finished generating test XML results (0.074 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test +Finished generating test XML results (0.135 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test Generating HTML test report... -Finished generating test html results (0.11 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test -:capsule:test (Thread[Task worker for ':',5,main]) completed. Took 10.461 secs. +Finished generating test html results (0.207 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test +:capsule:test (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 15.323 secs. Running test: Test testAddZip2(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip3(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip4(co.paralleluniverse.capsule.JarTest) @@ -1745,17 +1787,17 @@ Running test: Test testAddDirectory2(co.paralleluniverse.capsule.JarTest) Running test: Test testSimpleExtract(co.paralleluniverse.capsule.CapsuleLauncherTest) Running test: Test testEnableJMX(co.paralleluniverse.capsule.CapsuleLauncherTest) +Gradle Test Executor 1 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 1 finished executing tests. -Finished generating test XML results (0.006 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test +Finished generating test XML results (0.022 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test Generating HTML test report... -Finished generating test html results (0.012 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test -:capsule-util:test (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 14.052 secs. +Finished generating test html results (0.02 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test +:capsule-util:test (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 21.617 secs. -BUILD SUCCESSFUL in 59s +BUILD SUCCESSFUL in 1m 16s 11 actionable tasks: 4 executed, 7 up-to-date create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -1787,12 +1829,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/22741/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/22741/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4794 and its subdirectories -I: Current time: Sat Apr 22 17:49:32 -12 2023 -I: pbuilder-time-stamp: 1682228972 +I: removing directory /srv/workspace/pbuilder/22741 and its subdirectories +I: Current time: Sun May 26 02:17:06 +14 2024 +I: pbuilder-time-stamp: 1716639426