Diff of the two buildlogs: -- --- b1/build.log 2023-04-09 13:24:47.083308955 +0000 +++ b2/build.log 2023-04-09 13:26:43.739398230 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Apr 9 01:23:08 -12 2023 -I: pbuilder-time-stamp: 1681046588 +I: Current time: Sun May 12 09:47:51 +14 2024 +I: pbuilder-time-stamp: 1715456871 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./aegean_0.16.0+dfsg.orig.tar.xz] I: copying [./aegean_0.16.0+dfsg-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Sep 9 06:56:26 2019 -12 +gpgv: Signature made Tue Sep 10 08:56:26 2019 +14 gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./aegean_0.16.0+dfsg-2.dsc: no acceptable signature found @@ -33,11 +33,20 @@ dpkg-source: info: applying 2to3.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/11251/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/20592/tmp/hooks/D01_modify_environment starting +debug: Running on codethink15-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/20592/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/20592/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -47,38 +56,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='11251' + PPID='20592' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OP0K6ZYT/pbuilderrc_FFQx --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OP0K6ZYT/b1 --logfile b1/build.log aegean_0.16.0+dfsg-2.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OP0K6ZYT/pbuilderrc_Lcc8 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OP0K6ZYT/b2 --logfile b2/build.log --extrapackages usrmerge aegean_0.16.0+dfsg-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink16-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 7 22:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/11251/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 10 06:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/20592/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -245,7 +254,7 @@ Get: 123 http://deb.debian.org/debian bookworm/main arm64 lua-md5 arm64 1.2+git+1+8d87fee-2 [13.0 kB] Get: 124 http://deb.debian.org/debian bookworm/main arm64 libgenometools0 arm64 1.6.2+ds-3 [1187 kB] Get: 125 http://deb.debian.org/debian bookworm/main arm64 libgenometools0-dev arm64 1.6.2+ds-3 [94.5 kB] -Fetched 47.1 MB in 1s (35.5 MB/s) +Fetched 47.1 MB in 3s (15.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -768,10 +777,15 @@ Reading package lists... Building dependency tree... Reading state information... +usrmerge is already the newest version (35). fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/aegean-0.16.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../aegean_0.16.0+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/20592/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/20592/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/aegean-0.16.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../aegean_0.16.0+dfsg-2_source.changes dpkg-buildpackage: info: source package aegean dpkg-buildpackage: info: source version 0.16.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -782,9 +796,9 @@ dh clean dh_auto_clean make -j8 clean -make[1]: Entering directory '/build/aegean-0.16.0+dfsg' +make[1]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan rm -rf bin/parseval bin/canon-gff3 bin/locuspocus bin/gaeval bin/xtractore bin/pmrna bin/tidygff3 bin/unittests libaegean.a obj/AgnAttributeFilterStream.o obj/AgnCliquePair.o obj/AgnCompareReportHTML.o obj/AgnCompareReportText.o obj/AgnComparison.o obj/AgnFilterStream.o obj/AgnGaevalVisitor.o obj/AgnGeneStream.o obj/AgnInferCDSVisitor.o obj/AgnInferExonsVisitor.o obj/AgnInferParentStream.o obj/AgnLocus.o obj/AgnLocusFilterStream.o obj/AgnLocusMapVisitor.o obj/AgnLocusRefineStream.o obj/AgnLocusStream.o obj/AgnMrnaRepVisitor.o obj/AgnPseudogeneFixVisitor.o obj/AgnRemoveChildrenVisitor.o obj/AgnTranscriptClique.o obj/AgnTypecheck.o obj/AgnUnitTest.o obj/AgnUtils.o inc/core/AgnVersion.h bin/*.dSYM -make[1]: Leaving directory '/build/aegean-0.16.0+dfsg' +make[1]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten dh_clean debian/rules build dh build @@ -792,10 +806,10 @@ dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build -make[1]: Entering directory '/build/aegean-0.16.0+dfsg' +make[1]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan dh_auto_build -- prefix=/build/aegean-0.16.0+dfsg/debian/tmp 64bit=yes errorcheck=no make -j8 "INSTALL=install --strip-program=true" prefix=/build/aegean-0.16.0\+dfsg/debian/tmp 64bit=yes errorcheck=no -make[2]: Entering directory '/build/aegean-0.16.0+dfsg' +make[2]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan [print inc/core/AgnVersion.h] [compile AgnAttributeFilterStream] [compile AgnCliquePair] @@ -851,13 +865,13 @@ [create libaegean] ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libaegean.a -make[2]: Leaving directory '/build/aegean-0.16.0+dfsg' -make[1]: Leaving directory '/build/aegean-0.16.0+dfsg' +make[2]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten +make[1]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten debian/rules override_dh_auto_test -make[1]: Entering directory '/build/aegean-0.16.0+dfsg' +make[1]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan dh_auto_test -- useshared=yes 64bit=yes testthreads=5 make -j8 test useshared=yes 64bit=yes testthreads=5 -make[2]: Entering directory '/build/aegean-0.16.0+dfsg' +make[2]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan AEGeAn Unit Tests AEGeAn::AgnAttributeFilterStream | SUCCESS | Pogonomyrmex barbatus (partial) | PASS @@ -981,30 +995,30 @@ | A. mellifera pseudo | PASS AEGeAn::tidygff3 | A. dorsata exception | PASS -make[2]: Leaving directory '/build/aegean-0.16.0+dfsg' -make[1]: Leaving directory '/build/aegean-0.16.0+dfsg' +make[2]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten +make[1]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install -make[1]: Entering directory '/build/aegean-0.16.0+dfsg' +make[1]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan dh_auto_install -- 64bit=yes prefix=/build/aegean-0.16.0+dfsg/debian/tmp make -j8 install DESTDIR=/build/aegean-0.16.0\+dfsg/debian/aegean AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" 64bit=yes prefix=/build/aegean-0.16.0\+dfsg/debian/tmp -make[2]: Entering directory '/build/aegean-0.16.0+dfsg' +make[2]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan cp bin/parseval bin/canon-gff3 bin/locuspocus bin/gaeval bin/xtractore bin/pmrna bin/tidygff3 /build/aegean-0.16.0+dfsg/debian/tmp/bin/. cp libaegean.a /build/aegean-0.16.0+dfsg/debian/tmp/lib/. cp inc/core/*.h /build/aegean-0.16.0+dfsg/debian/tmp/include/aegean/. cp -r data/share/* /build/aegean-0.16.0+dfsg/debian/tmp/share/aegean/. -make[2]: Leaving directory '/build/aegean-0.16.0+dfsg' -make[1]: Leaving directory '/build/aegean-0.16.0+dfsg' +make[2]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten +make[1]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten dh_install debian/rules override_dh_installdocs -make[1]: Entering directory '/build/aegean-0.16.0+dfsg' +make[1]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan cp /build/aegean-0.16.0+dfsg/README.md /build/aegean-0.16.0+dfsg/README dh_installdocs -make[1]: Leaving directory '/build/aegean-0.16.0+dfsg' +make[1]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten dh_installchangelogs dh_installman dh_perl @@ -1082,8 +1096,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'aegean-dbgsym' in '../aegean-dbgsym_0.16.0+dfsg-2_arm64.deb'. -dpkg-deb: building package 'aegean' in '../aegean_0.16.0+dfsg-2_arm64.deb'. +dpkg-deb: pakket 'aegean' wordt gebouwd in '../aegean_0.16.0+dfsg-2_arm64.deb'. +dpkg-deb: pakket 'aegean-dbgsym' wordt gebouwd in '../aegean-dbgsym_0.16.0+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../aegean_0.16.0+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../aegean_0.16.0+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1091,12 +1105,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/20592/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/20592/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/11251 and its subdirectories -I: Current time: Sun Apr 9 01:24:45 -12 2023 -I: pbuilder-time-stamp: 1681046685 +I: removing directory /srv/workspace/pbuilder/20592 and its subdirectories +I: Current time: Sun May 12 09:49:42 +14 2024 +I: pbuilder-time-stamp: 1715456982