Diff of the two buildlogs: -- --- b1/build.log 2023-05-12 13:49:18.207220133 +0000 +++ b2/build.log 2023-05-12 13:51:27.161573615 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 12 01:45:19 -12 2023 -I: pbuilder-time-stamp: 1683899119 +I: Current time: Fri Jun 14 10:12:22 +14 2024 +I: pbuilder-time-stamp: 1718309542 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./squizz_0.99d+dfsg.orig.tar.xz] I: copying [./squizz_0.99d+dfsg-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Sat Aug 15 01:26:15 2020 -12 +gpgv: Signature made Sun Aug 16 03:26:15 2020 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key @@ -29,135 +29,167 @@ dpkg-source: info: applying disable-swissprot-test.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2789092/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3575572/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 14 10:12 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3575572/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3575572/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='0a931faacb29406ab136d1ad50b900d3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2789092' - PS1='# ' - PS2='> ' + INVOCATION_ID=79753c48d534401c8169ab9f9ffb2b2c + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3575572 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gAV1yyNg/pbuilderrc_UP1s --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gAV1yyNg/b1 --logfile b1/build.log squizz_0.99d+dfsg-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gAV1yyNg/pbuilderrc_1ysh --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gAV1yyNg/b2 --logfile b2/build.log --extrapackages usrmerge squizz_0.99d+dfsg-3.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos1-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more - -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount - -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/2789092/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 2023 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 2023 more + -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount + -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Jun 14 10:12 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 2023 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/3575572/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -223,7 +255,7 @@ Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] -Fetched 18.7 MB in 0s (40.5 MB/s) +Fetched 18.7 MB in 3s (5727 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -357,8 +389,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/squizz-0.99d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../squizz_0.99d+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/3575572/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/3575572/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/squizz-0.99d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../squizz_0.99d+dfsg-3_source.changes dpkg-buildpackage: info: source package squizz dpkg-buildpackage: info: source version 0.99d+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -396,7 +439,7 @@ ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes -checking for a race-free mkdir -p... /bin/mkdir -p +checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes @@ -416,10 +459,10 @@ checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf -checking for a sed that does not truncate output... /bin/sed -checking for grep that handles long lines and -e... /bin/grep -checking for egrep... /bin/grep -E -checking for fgrep... /bin/grep -F +checking for a sed that does not truncate output... /usr/bin/sed +checking for grep that handles long lines and -e... /usr/bin/grep +checking for egrep... /usr/bin/grep -E +checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B @@ -440,8 +483,8 @@ checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no -checking for a working dd... /bin/dd -checking how to truncate binary pipes... /bin/dd bs=4096 count=1 +checking for a working dd... /usr/bin/dd +checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes @@ -509,7 +552,7 @@ config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build - make -j15 + make -j16 make[1]: Entering directory '/build/squizz-0.99d+dfsg' Making all in . make[2]: Entering directory '/build/squizz-0.99d+dfsg' @@ -519,202 +562,202 @@ make[2]: Entering directory '/build/squizz-0.99d+dfsg/lib' make all-am make[3]: Entering directory '/build/squizz-0.99d+dfsg/lib' -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.lo sequence.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o align.lo align.c -/bin/bash ../libtool --tag=CC 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sequence/.libs/embly.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fasta.c -fPIC -DPIC -o sequence/.libs/fasta.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fastay.c -fPIC -DPIC -o sequence/.libs/fastay.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embl.c -fPIC -DPIC -o sequence/.libs/embl.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embll.c -fPIC -DPIC -o sequence/.libs/embll.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/genbanky.c -fPIC -DPIC -o sequence/.libs/genbanky.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fastal.c -fPIC -DPIC -o sequence/.libs/fastal.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fastay.c -fPIC -DPIC -o sequence/.libs/fastay.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gde.c -fPIC -DPIC -o sequence/.libs/gde.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gcgy.c -fPIC -DPIC -o sequence/.libs/gcgy.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embll.c -fPIC -DPIC -o sequence/.libs/embll.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/genbank.c -fPIC -DPIC -o sequence/.libs/genbank.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embly.c -fPIC -DPIC -o sequence/.libs/embly.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. 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-fstack-protector-strong -Wformat -Werror=format-security -c sequence/embly.c -o sequence/embly.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/gdel.lo sequence/gdel.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gcgy.c -o sequence/gcgy.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fastay.c -o sequence/fastay.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/ig.lo sequence/ig.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/genbank.c -o sequence/genbank.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/igy.lo sequence/igy.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gdey.c -fPIC -DPIC -o sequence/.libs/gdey.o +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. 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>/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/igy.c -o sequence/igy.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/codata.c -fPIC -DPIC -o sequence/.libs/codata.o +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/rawy.lo sequence/rawy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/codatay.c -fPIC -DPIC -o sequence/.libs/codatay.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/nbrf.c -o sequence/nbrf.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gdel.c -o sequence/gdel.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/codata.c -o sequence/codata.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/rawy.lo sequence/rawy.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/rawl.lo sequence/rawl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/raw.c -fPIC -DPIC -o sequence/.libs/raw.o +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/sprot.lo sequence/sprot.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/codatal.c -fPIC -DPIC -o sequence/.libs/codatal.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. 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-DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/sproty.lo sequence/sproty.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/nbrfy.c -o sequence/nbrfy.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gdel.c -o sequence/gdel.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/sproty.lo sequence/sproty.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time 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compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/stockl.c -fPIC -DPIC -o align/.libs/stockl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/parse.c -fPIC -DPIC -o align/.libs/parse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/stocky.c -o align/stocky.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/phylip.c -fPIC -DPIC -o align/.libs/phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/parse.c -o align/parse.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/sprotl.c -o sequence/sprotl.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/phylip.c -fPIC -DPIC -o align/.libs/phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/phylip.c -o align/phylip.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/phylipil.c -o align/phylipil.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/nexusil.c -o align/nexusil.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/stockl.c -o align/stockl.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/phylipil.c -o align/phylipil.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/phylipsl.c -o align/phylipsl.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libbioali.la -rpath /usr/lib/x86_64-linux-gnu align.lo align/clustal.lo align/clustaly.lo align/clustall.lo align/fasta2.lo align/mega.lo align/megay.lo align/megal.lo align/msf.lo align/msfy.lo align/msfl.lo align/nexusi.lo align/nexusiy.lo align/nexusil.lo align/phylipi.lo align/phylipiy.lo align/phylipil.lo align/phylips.lo align/phylipsy.lo align/phylipsl.lo align/stock.lo align/stocky.lo align/stockl.lo align/parse.lo align/phylip.lo -/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libbioseq.la -rpath /usr/lib/x86_64-linux-gnu sequence.lo sequence/embl.lo sequence/embly.lo sequence/embll.lo sequence/fasta.lo sequence/fastay.lo sequence/fastal.lo sequence/genbank.lo sequence/genbanky.lo sequence/genbankl.lo sequence/gcg.lo sequence/gcgy.lo sequence/gcgl.lo sequence/gde.lo sequence/gdey.lo sequence/gdel.lo sequence/ig.lo sequence/igy.lo sequence/igl.lo sequence/nbrf.lo sequence/nbrfy.lo sequence/nbrfl.lo sequence/codata.lo sequence/codatay.lo sequence/codatal.lo sequence/raw.lo sequence/rawy.lo sequence/rawl.lo sequence/sprot.lo sequence/sproty.lo sequence/sprotl.lo sequence/parse.lo sequence/protein.lo sequence/utils.lo extern/text.lo extern/file.lo +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/stockl.c -o align/stockl.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libbioali.la -rpath /usr/lib/x86_64-linux-gnu align.lo align/clustal.lo align/clustaly.lo align/clustall.lo align/fasta2.lo align/mega.lo align/megay.lo align/megal.lo align/msf.lo align/msfy.lo align/msfl.lo align/nexusi.lo align/nexusiy.lo align/nexusil.lo align/phylipi.lo align/phylipiy.lo align/phylipil.lo align/phylips.lo align/phylipsy.lo align/phylipsl.lo align/stock.lo align/stocky.lo align/stockl.lo align/parse.lo align/phylip.lo libtool: link: gcc -shared -fPIC -DPIC .libs/align.o align/.libs/clustal.o align/.libs/clustaly.o align/.libs/clustall.o align/.libs/fasta2.o align/.libs/mega.o align/.libs/megay.o align/.libs/megal.o align/.libs/msf.o align/.libs/msfy.o align/.libs/msfl.o align/.libs/nexusi.o align/.libs/nexusiy.o align/.libs/nexusil.o align/.libs/phylipi.o align/.libs/phylipiy.o align/.libs/phylipil.o align/.libs/phylips.o align/.libs/phylipsy.o align/.libs/phylipsl.o align/.libs/stock.o align/.libs/stocky.o align/.libs/stockl.o align/.libs/parse.o align/.libs/phylip.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libbioali.so.0 -o .libs/libbioali.so.0.0.0 -libtool: link: gcc -shared -fPIC -DPIC .libs/sequence.o sequence/.libs/embl.o sequence/.libs/embly.o sequence/.libs/embll.o sequence/.libs/fasta.o sequence/.libs/fastay.o sequence/.libs/fastal.o sequence/.libs/genbank.o sequence/.libs/genbanky.o sequence/.libs/genbankl.o sequence/.libs/gcg.o sequence/.libs/gcgy.o sequence/.libs/gcgl.o sequence/.libs/gde.o sequence/.libs/gdey.o sequence/.libs/gdel.o sequence/.libs/ig.o sequence/.libs/igy.o sequence/.libs/igl.o sequence/.libs/nbrf.o sequence/.libs/nbrfy.o sequence/.libs/nbrfl.o sequence/.libs/codata.o sequence/.libs/codatay.o sequence/.libs/codatal.o sequence/.libs/raw.o sequence/.libs/rawy.o sequence/.libs/rawl.o sequence/.libs/sprot.o sequence/.libs/sproty.o sequence/.libs/sprotl.o sequence/.libs/parse.o sequence/.libs/protein.o sequence/.libs/utils.o extern/.libs/text.o extern/.libs/file.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libbioseq.so.0 -o .libs/libbioseq.so.0.0.0 -libtool: link: (cd ".libs" && rm -f "libbioseq.so.0" && ln -s "libbioseq.so.0.0.0" "libbioseq.so.0") libtool: link: (cd ".libs" && rm -f "libbioali.so.0" && ln -s "libbioali.so.0.0.0" "libbioali.so.0") libtool: link: (cd ".libs" && rm -f "libbioali.so" && ln -s "libbioali.so.0.0.0" "libbioali.so") -libtool: link: (cd ".libs" && rm -f "libbioseq.so" && ln -s "libbioseq.so.0.0.0" "libbioseq.so") -libtool: link: ar cr .libs/libbioseq.a sequence.o sequence/embl.o sequence/embly.o sequence/embll.o sequence/fasta.o sequence/fastay.o sequence/fastal.o sequence/genbank.o sequence/genbanky.o sequence/genbankl.o sequence/gcg.o sequence/gcgy.o sequence/gcgl.o sequence/gde.o sequence/gdey.o sequence/gdel.o sequence/ig.o sequence/igy.o sequence/igl.o sequence/nbrf.o sequence/nbrfy.o sequence/nbrfl.o sequence/codata.o sequence/codatay.o sequence/codatal.o sequence/raw.o sequence/rawy.o sequence/rawl.o sequence/sprot.o sequence/sproty.o sequence/sprotl.o sequence/parse.o sequence/protein.o sequence/utils.o extern/text.o extern/file.o libtool: link: ar cr .libs/libbioali.a align.o align/clustal.o align/clustaly.o align/clustall.o align/fasta2.o align/mega.o align/megay.o align/megal.o align/msf.o align/msfy.o align/msfl.o align/nexusi.o align/nexusiy.o align/nexusil.o align/phylipi.o align/phylipiy.o align/phylipil.o align/phylips.o align/phylipsy.o align/phylipsl.o align/stock.o align/stocky.o align/stockl.o align/parse.o align/phylip.o libtool: link: ranlib .libs/libbioali.a -libtool: link: ranlib .libs/libbioseq.a libtool: link: ( cd ".libs" && rm -f "libbioali.la" && ln -s "../libbioali.la" "libbioali.la" ) +/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libbioseq.la -rpath /usr/lib/x86_64-linux-gnu sequence.lo sequence/embl.lo sequence/embly.lo sequence/embll.lo sequence/fasta.lo sequence/fastay.lo sequence/fastal.lo sequence/genbank.lo sequence/genbanky.lo sequence/genbankl.lo sequence/gcg.lo sequence/gcgy.lo sequence/gcgl.lo sequence/gde.lo sequence/gdey.lo sequence/gdel.lo sequence/ig.lo sequence/igy.lo sequence/igl.lo sequence/nbrf.lo sequence/nbrfy.lo sequence/nbrfl.lo sequence/codata.lo sequence/codatay.lo sequence/codatal.lo sequence/raw.lo sequence/rawy.lo sequence/rawl.lo sequence/sprot.lo sequence/sproty.lo sequence/sprotl.lo sequence/parse.lo sequence/protein.lo sequence/utils.lo extern/text.lo extern/file.lo +libtool: link: gcc -shared -fPIC -DPIC .libs/sequence.o sequence/.libs/embl.o sequence/.libs/embly.o sequence/.libs/embll.o sequence/.libs/fasta.o sequence/.libs/fastay.o sequence/.libs/fastal.o sequence/.libs/genbank.o sequence/.libs/genbanky.o sequence/.libs/genbankl.o sequence/.libs/gcg.o sequence/.libs/gcgy.o sequence/.libs/gcgl.o sequence/.libs/gde.o sequence/.libs/gdey.o sequence/.libs/gdel.o sequence/.libs/ig.o sequence/.libs/igy.o sequence/.libs/igl.o sequence/.libs/nbrf.o sequence/.libs/nbrfy.o sequence/.libs/nbrfl.o sequence/.libs/codata.o sequence/.libs/codatay.o sequence/.libs/codatal.o sequence/.libs/raw.o sequence/.libs/rawy.o sequence/.libs/rawl.o sequence/.libs/sprot.o sequence/.libs/sproty.o sequence/.libs/sprotl.o sequence/.libs/parse.o sequence/.libs/protein.o sequence/.libs/utils.o extern/.libs/text.o extern/.libs/file.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libbioseq.so.0 -o .libs/libbioseq.so.0.0.0 +libtool: link: (cd ".libs" && rm -f "libbioseq.so.0" && ln -s "libbioseq.so.0.0.0" "libbioseq.so.0") +libtool: link: (cd ".libs" && rm -f "libbioseq.so" && ln -s "libbioseq.so.0.0.0" "libbioseq.so") +libtool: link: ar cr .libs/libbioseq.a sequence.o sequence/embl.o sequence/embly.o sequence/embll.o sequence/fasta.o sequence/fastay.o sequence/fastal.o sequence/genbank.o sequence/genbanky.o sequence/genbankl.o sequence/gcg.o sequence/gcgy.o sequence/gcgl.o sequence/gde.o sequence/gdey.o sequence/gdel.o sequence/ig.o sequence/igy.o sequence/igl.o sequence/nbrf.o sequence/nbrfy.o sequence/nbrfl.o sequence/codata.o sequence/codatay.o sequence/codatal.o sequence/raw.o sequence/rawy.o sequence/rawl.o sequence/sprot.o sequence/sproty.o sequence/sprotl.o sequence/parse.o sequence/protein.o sequence/utils.o extern/text.o extern/file.o +libtool: link: ranlib .libs/libbioseq.a libtool: link: ( cd ".libs" && rm -f "libbioseq.la" && ln -s "../libbioseq.la" "libbioseq.la" ) make[3]: Leaving directory '/build/squizz-0.99d+dfsg/lib' make[2]: Leaving directory '/build/squizz-0.99d+dfsg/lib' @@ -722,7 +765,7 @@ make[2]: Entering directory '/build/squizz-0.99d+dfsg/src' gcc -DHAVE_CONFIG_H -I. -I../lib -I./../lib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o squizz.o squizz.c gcc -DHAVE_CONFIG_H -I. -I../lib -I./../lib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o format.o format.c -/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o squizz squizz.o format.o ../lib/libbioali.la ../lib/libbioseq.la +/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o squizz squizz.o format.o ../lib/libbioali.la ../lib/libbioseq.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/squizz squizz.o format.o ../lib/.libs/libbioali.so ../lib/.libs/libbioseq.so make[2]: Leaving directory '/build/squizz-0.99d+dfsg/src' Making all in data @@ -817,8 +860,8 @@ Making install in lib make[2]: Entering directory '/build/squizz-0.99d+dfsg/lib' make[3]: Entering directory '/build/squizz-0.99d+dfsg/lib' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libbioseq.la libbioali.la '/build/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libbioseq.la libbioali.la '/build/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libbioseq.so.0.0.0 /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioseq.so.0.0.0 libtool: install: (cd /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libbioseq.so.0.0.0 libbioseq.so.0 || { rm -f libbioseq.so.0 && ln -s libbioseq.so.0.0.0 libbioseq.so.0; }; }) libtool: install: (cd /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libbioseq.so.0.0.0 libbioseq.so || { rm -f libbioseq.so && ln -s libbioseq.so.0.0.0 libbioseq.so; }; }) @@ -834,10 +877,10 @@ libtool: install: chmod 644 /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioali.a libtool: install: ranlib /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioali.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' /usr/bin/install -c -m 644 align/clustal.h align/fasta2.h align/mega.h align/msf.h align/nexusi.h align/phylipi.h align/phylips.h align/stock.h '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' /usr/bin/install -c -m 644 sequence/embl.h sequence/fasta.h sequence/genbank.h sequence/gcg.h sequence/gde.h sequence/ig.h sequence/nbrf.h sequence/codata.h sequence/raw.h sequence/sprot.h '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' /usr/bin/install -c -m 644 sequence.h align.h '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/.' make[3]: Leaving directory '/build/squizz-0.99d+dfsg/lib' @@ -845,8 +888,8 @@ Making install in src make[2]: Entering directory '/build/squizz-0.99d+dfsg/src' make[3]: Entering directory '/build/squizz-0.99d+dfsg/src' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c squizz '/build/squizz-0.99d+dfsg/debian/tmp/usr/bin' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c squizz '/build/squizz-0.99d+dfsg/debian/tmp/usr/bin' libtool: warning: '../lib/libbioali.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: warning: '../lib/libbioseq.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/squizz /build/squizz-0.99d+dfsg/debian/tmp/usr/bin/squizz @@ -864,11 +907,11 @@ make[2]: Entering directory '/build/squizz-0.99d+dfsg/doc' make[3]: Entering directory '/build/squizz-0.99d+dfsg/doc' make[3]: Nothing to be done for 'install-exec-am'. - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' /usr/bin/install -c -m 644 seqfmt.html alifmt.html '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'squizz.man' '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1/squizz.1' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5' /usr/bin/install -c -m 644 'seqfmt.man' '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5/seqfmt.5' /usr/bin/install -c -m 644 'alifmt.man' '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5/alifmt.5' make[3]: Leaving directory '/build/squizz-0.99d+dfsg/doc' @@ -902,25 +945,25 @@ dh_strip -a dh_makeshlibs -a dh_shlibdeps -a -dpkg-shlibdeps: warning: symbol gcg_crc used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol sequence_type used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol sequence_new used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol fastay_parse used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol xstrdup used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_free used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol parse_stradd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_fixnam used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol fasta_print used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol text_strupd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol sequence_new used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol fastay_check used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol fastay_parse used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol text_strupd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol parse_stradd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol sequence_type used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libsquizz-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb -dpkg-deb: building package 'libsquizz' in '../libsquizz_0.99d+dfsg-3_amd64.deb'. -dpkg-deb: building package 'squizz-dbgsym' in '../squizz-dbgsym_0.99d+dfsg-3_amd64.deb'. dpkg-deb: building package 'squizz' in '../squizz_0.99d+dfsg-3_amd64.deb'. +dpkg-deb: building package 'squizz-dbgsym' in '../squizz-dbgsym_0.99d+dfsg-3_amd64.deb'. +dpkg-deb: building package 'libsquizz' in '../libsquizz_0.99d+dfsg-3_amd64.deb'. dpkg-deb: building package 'libsquizz-dbgsym' in '../libsquizz-dbgsym_0.99d+dfsg-3_amd64.deb'. dpkg-deb: building package 'libsquizz-dev' in '../libsquizz-dev_0.99d+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../squizz_0.99d+dfsg-3_amd64.buildinfo @@ -930,12 +973,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3575572/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3575572/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2789092 and its subdirectories -I: Current time: Fri May 12 01:49:17 -12 2023 -I: pbuilder-time-stamp: 1683899357 +I: removing directory /srv/workspace/pbuilder/3575572 and its subdirectories +I: Current time: Fri Jun 14 10:14:27 +14 2024 +I: pbuilder-time-stamp: 1718309667