Diff of the two buildlogs: -- --- b1/build.log 2023-05-22 17:20:50.573202771 +0000 +++ b2/build.log 2023-05-22 17:25:08.737857769 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon May 22 05:16:55 -12 2023 -I: pbuilder-time-stamp: 1684775815 +I: Current time: Mon Jun 24 13:43:55 +14 2024 +I: pbuilder-time-stamp: 1719186235 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Sep 29 00:45:21 2022 -12 +gpgv: Signature made Fri Sep 30 02:45:21 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,135 +30,167 @@ dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2015742/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 24 13:44 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='1522689255e243ea8093df29e856be5a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2015742' - PS1='# ' - PS2='> ' + INVOCATION_ID=091c65a98de64a0dbaeda0fb1761f2b7 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1252620 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/pbuilderrc_HZyk --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/b1 --logfile b1/build.log racon_1.5.0-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/pbuilderrc_JYcL --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/b2 --logfile b2/build.log --extrapackages usrmerge racon_1.5.0-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos1-amd64 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more - -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount - -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/2015742/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 2023 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 2023 more + -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount + -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Jun 24 13:44 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 2023 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -271,7 +303,7 @@ Get: 59 http://deb.debian.org/debian bookworm/main amd64 libspoa-dev amd64 4.0.8-1 [9356 B] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libthread-pool-dev amd64 4.0.0-1 [7240 B] Get: 61 http://deb.debian.org/debian bookworm/main amd64 rampler amd64 2.1.1-1 [21.2 kB] -Fetched 34.5 MB in 1s (46.5 MB/s) +Fetched 34.5 MB in 1s (46.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -529,8 +561,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes +I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable @@ -571,7 +614,7 @@ sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/racon-1.5.0' dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/racon-1.5.0 -B/build/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/racon-1.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -584,14 +627,14 @@ make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' [ 10%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o -[ 20%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o -[ 30%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o /usr/bin/c++ -I/build/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/racon-1.5.0/src/logger.cpp -/usr/bin/c++ -I/build/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/racon-1.5.0/src/overlap.cpp -[ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o +[ 20%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o +[ 30%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/racon-1.5.0/src/polisher.cpp -/usr/bin/c++ -I/build/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/racon-1.5.0/src/sequence.cpp +[ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o +/usr/bin/c++ -I/build/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/racon-1.5.0/src/overlap.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o +/usr/bin/c++ -I/build/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/racon-1.5.0/src/sequence.cpp /usr/bin/c++ -I/build/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake @@ -601,9 +644,9 @@ make[3]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend -make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/racon-1.5.0 /build/racon-1.5.0 /build/racon-1.5.0/obj-x86_64-linux-gnu /build/racon-1.5.0/obj-x86_64-linux-gnu /build/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake --color= +make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/racon-1.5.0 /build/racon-1.5.0 /build/racon-1.5.0/obj-x86_64-linux-gnu /build/racon-1.5.0/obj-x86_64-linux-gnu /build/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' @@ -637,119 +680,119 @@ [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError -[ OK ] RaconInitializeTest.PolisherTypeError (1 ms) +[ OK ] RaconInitializeTest.PolisherTypeError (7 ms) [ RUN ] RaconInitializeTest.WindowLengthError -[ OK ] RaconInitializeTest.WindowLengthError (1 ms) +[ OK ] RaconInitializeTest.WindowLengthError (10 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError -[ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) +[ OK ] RaconInitializeTest.SequencesPathExtensionError (12 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError -[ OK ] RaconInitializeTest.OverlapsPathExtensionError (5 ms) +[ OK ] RaconInitializeTest.OverlapsPathExtensionError (19 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (5 ms) -[----------] 5 tests from RaconInitializeTest (17 ms total) +[ OK ] RaconInitializeTest.TargetPathExtensionError (24 ms) +[----------] 5 tests from RaconInitializeTest (74 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.000802 s -[racon::Polisher::initialize] loaded sequences 0.059082 s -[racon::Polisher::initialize] loaded overlaps 0.000620 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.051613 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.068028 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.083658 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.102145 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.115147 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.127515 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.174631 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.195049 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.211078 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.225821 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.247946 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.266002 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.286110 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.297469 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.325439 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.367166 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.380290 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.398356 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.419060 s [racon::Polisher::initialize] aligning overlaps [====================] 0.419093 s -[racon::Polisher::initialize] transformed data into windows 0.002851 s -[racon::Polisher::polish] generating consensus [=> ] 0.041022 s [racon::Polisher::polish] generating consensus [==> ] 0.067262 s [racon::Polisher::polish] generating consensus [===> ] 0.101072 s [racon::Polisher::polish] generating consensus [====> ] 0.129465 s [racon::Polisher::polish] generating consensus [=====> ] 0.139892 s [racon::Polisher::polish] generating consensus [======> ] 0.156995 s [racon::Polisher::polish] generating consensus [=======> ] 0.172432 s [racon::Polisher::polish] generating consensus [========> ] 0.197081 s [racon::Polisher::polish] generating consensus [=========> ] 0.216975 s [racon::Polisher::polish] generating consensus [==========> ] 0.240966 s [racon::Polisher::polish] generating consensus [===========> ] 0.280960 s [racon::Polisher::polish] generating consensus [============> ] 0.337009 s [racon::Polisher::polish] generating consensus [=============> ] 0.407890 s [racon::Polisher::polish] generating consensus [==============> ] 0.481140 s [racon::Polisher::polish] generating consensus [===============> ] 0.528685 s [racon::Polisher::polish] generating consensus [================> ] 0.565024 s [racon::Polisher::polish] generating consensus [=================> ] 0.610820 s [racon::Polisher::polish] generating consensus [==================> ] 0.636902 s [racon::Polisher::polish] generating consensus [===================>] 0.672815 s [racon::Polisher::polish] generating consensus [====================] 0.816369 s -[racon::Polisher::] total = 1.326376 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (1335 ms) +[racon::Polisher::initialize] loaded target sequences 0.000886 s +[racon::Polisher::initialize] loaded sequences 0.068690 s +[racon::Polisher::initialize] loaded overlaps 0.000596 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.145101 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.193079 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.225076 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.265093 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.297098 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.305083 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.329119 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.374008 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.390035 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.421151 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.453097 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.501092 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.573101 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.589111 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.629090 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.653076 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.693082 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.693124 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.709097 s [racon::Polisher::initialize] aligning overlaps [====================] 0.721115 s +[racon::Polisher::initialize] transformed data into windows 0.003011 s +[racon::Polisher::polish] generating consensus [=> ] 0.080903 s [racon::Polisher::polish] generating consensus [==> ] 0.148912 s [racon::Polisher::polish] generating consensus [===> ] 0.204862 s [racon::Polisher::polish] generating consensus [====> ] 0.252892 s [racon::Polisher::polish] generating consensus [=====> ] 0.284841 s [racon::Polisher::polish] generating consensus [======> ] 0.316860 s [racon::Polisher::polish] generating consensus [=======> ] 0.348825 s [racon::Polisher::polish] generating consensus [========> ] 0.396905 s [racon::Polisher::polish] generating consensus [=========> ] 0.428845 s [racon::Polisher::polish] generating consensus [==========> ] 0.484850 s [racon::Polisher::polish] generating consensus [===========> ] 0.580856 s [racon::Polisher::polish] generating consensus [============> ] 0.676968 s [racon::Polisher::polish] generating consensus [=============> ] 0.828874 s [racon::Polisher::polish] generating consensus [==============> ] 0.972866 s [racon::Polisher::polish] generating consensus [===============> ] 0.980852 s [racon::Polisher::polish] generating consensus [================> ] 1.060844 s [racon::Polisher::polish] generating consensus [=================> ] 1.140856 s [racon::Polisher::polish] generating consensus [==================> ] 1.140922 s [racon::Polisher::polish] generating consensus [===================>] 1.180851 s [racon::Polisher::polish] generating consensus [====================] 1.182203 s +[racon::Polisher::] total = 2.016976 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (2045 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.000760 s -[racon::Polisher::initialize] loaded sequences 0.019799 s -[racon::Polisher::initialize] loaded overlaps 0.000387 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.047568 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.067447 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.087009 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.103465 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.123457 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.138757 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.181708 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.203447 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.219910 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.237111 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.256480 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.275600 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.293099 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.304199 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.315456 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.343938 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.352723 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.366970 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.388510 s [racon::Polisher::initialize] aligning overlaps [====================] 0.408897 s -[racon::Polisher::initialize] transformed data into windows 0.000602 s -[racon::Polisher::polish] generating consensus [=> ] 0.042443 s [racon::Polisher::polish] generating consensus [==> ] 0.081024 s [racon::Polisher::polish] generating consensus [===> ] 0.125911 s [racon::Polisher::polish] generating consensus [====> ] 0.157891 s [racon::Polisher::polish] generating consensus [=====> ] 0.181877 s [racon::Polisher::polish] generating consensus [======> ] 0.200527 s [racon::Polisher::polish] generating consensus [=======> ] 0.228615 s [racon::Polisher::polish] generating consensus [========> ] 0.252199 s [racon::Polisher::polish] generating consensus [=========> ] 0.277877 s [racon::Polisher::polish] generating consensus [==========> ] 0.317879 s [racon::Polisher::polish] generating consensus [===========> ] 0.367320 s [racon::Polisher::polish] generating consensus [============> ] 0.425600 s [racon::Polisher::polish] generating consensus [=============> ] 0.507325 s [racon::Polisher::polish] generating consensus [==============> ] 0.609907 s [racon::Polisher::polish] generating consensus [===============> ] 0.681131 s [racon::Polisher::polish] generating consensus [================> ] 0.748477 s [racon::Polisher::polish] generating consensus [=================> ] 0.801840 s [racon::Polisher::polish] generating consensus [==================> ] 0.843746 s [racon::Polisher::polish] generating consensus [===================>] 0.890126 s [racon::Polisher::polish] generating consensus [====================] 1.072852 s -[racon::Polisher::] total = 1.521505 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (1531 ms) +[racon::Polisher::initialize] loaded target sequences 0.000675 s +[racon::Polisher::initialize] loaded sequences 0.041913 s +[racon::Polisher::initialize] loaded overlaps 0.000422 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.062109 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.094073 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.130082 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.162086 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.194099 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.226067 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.314094 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.354101 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.378075 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.410091 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.450077 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.458073 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.466082 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.482085 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.530081 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.570076 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.570118 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.578066 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.578105 s [racon::Polisher::initialize] aligning overlaps [====================] 0.594125 s +[racon::Polisher::initialize] transformed data into windows 0.000710 s +[racon::Polisher::polish] generating consensus [=> ] 0.091170 s [racon::Polisher::polish] generating consensus [==> ] 0.171189 s [racon::Polisher::polish] generating consensus [===> ] 0.263191 s [racon::Polisher::polish] generating consensus [====> ] 0.335208 s [racon::Polisher::polish] generating consensus [=====> ] 0.383134 s [racon::Polisher::polish] generating consensus [======> ] 0.419129 s [racon::Polisher::polish] generating consensus [=======> ] 0.467122 s [racon::Polisher::polish] generating consensus [========> ] 0.515169 s [racon::Polisher::polish] generating consensus [=========> ] 0.575149 s [racon::Polisher::polish] generating consensus [==========> ] 0.655137 s [racon::Polisher::polish] generating consensus [===========> ] 0.779114 s [racon::Polisher::polish] generating consensus [============> ] 0.879138 s [racon::Polisher::polish] generating consensus [=============> ] 1.007175 s [racon::Polisher::polish] generating consensus [==============> ] 1.183135 s [racon::Polisher::polish] generating consensus [===============> ] 1.331139 s [racon::Polisher::polish] generating consensus [================> ] 1.475187 s [racon::Polisher::polish] generating consensus [=================> ] 1.483145 s [racon::Polisher::polish] generating consensus [==================> ] 1.483511 s [racon::Polisher::polish] generating consensus [===================>] 1.571180 s [racon::Polisher::polish] generating consensus [====================] 1.620289 s +[racon::Polisher::] total = 2.290907 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (2315 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.000655 s -[racon::Polisher::initialize] loaded sequences 0.046166 s -[racon::Polisher::initialize] loaded overlaps 0.031146 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.003918 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.004119 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.004372 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.004606 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.004772 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.004957 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.005211 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.005664 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.005785 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.005935 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.006147 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.006517 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.006644 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.006903 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.007136 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.007228 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.007240 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.007352 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.007459 s [racon::Polisher::initialize] aligning overlaps [====================] 0.007480 s -[racon::Polisher::initialize] transformed data into windows 0.003110 s -[racon::Polisher::polish] generating consensus [=> ] 0.038382 s [racon::Polisher::polish] generating consensus [==> ] 0.067081 s [racon::Polisher::polish] generating consensus [===> ] 0.102869 s [racon::Polisher::polish] generating consensus [====> ] 0.123770 s [racon::Polisher::polish] generating consensus [=====> ] 0.144986 s [racon::Polisher::polish] generating consensus [======> ] 0.157991 s [racon::Polisher::polish] generating consensus [=======> ] 0.177119 s [racon::Polisher::polish] generating consensus [========> ] 0.192199 s [racon::Polisher::polish] generating consensus [=========> ] 0.212661 s [racon::Polisher::polish] generating consensus [==========> ] 0.237327 s [racon::Polisher::polish] generating consensus [===========> ] 0.276822 s [racon::Polisher::polish] generating consensus [============> ] 0.330520 s [racon::Polisher::polish] generating consensus [=============> ] 0.401686 s [racon::Polisher::polish] generating consensus [==============> ] 0.468522 s [racon::Polisher::polish] generating consensus [===============> ] 0.520463 s [racon::Polisher::polish] generating consensus [================> ] 0.553826 s [racon::Polisher::polish] generating consensus [=================> ] 0.606194 s [racon::Polisher::polish] generating consensus [==================> ] 0.637126 s [racon::Polisher::polish] generating consensus [===================>] 0.657160 s [racon::Polisher::polish] generating consensus [====================] 0.774247 s -[racon::Polisher::] total = 0.883058 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (889 ms) +[racon::Polisher::initialize] loaded target sequences 0.000654 s +[racon::Polisher::initialize] loaded sequences 0.099450 s +[racon::Polisher::initialize] loaded overlaps 0.063351 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.013473 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.013501 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.013514 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.013526 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.013538 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.013551 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.013561 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.013572 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.013583 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.013595 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.013606 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.013618 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.013629 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.013641 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.013654 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.013678 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.013691 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.013705 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.013718 s [racon::Polisher::initialize] aligning overlaps [====================] 0.013731 s +[racon::Polisher::initialize] transformed data into windows 0.002912 s +[racon::Polisher::polish] generating consensus [=> ] 0.102513 s [racon::Polisher::polish] generating consensus [==> ] 0.154509 s [racon::Polisher::polish] generating consensus [===> ] 0.218493 s [racon::Polisher::polish] generating consensus [====> ] 0.266522 s [racon::Polisher::polish] generating consensus [=====> ] 0.298476 s [racon::Polisher::polish] generating consensus [======> ] 0.326490 s [racon::Polisher::polish] generating consensus [=======> ] 0.358502 s [racon::Polisher::polish] generating consensus [========> ] 0.378545 s [racon::Polisher::polish] generating consensus [=========> ] 0.422504 s [racon::Polisher::polish] generating consensus [==========> ] 0.490471 s [racon::Polisher::polish] generating consensus [===========> ] 0.574476 s [racon::Polisher::polish] generating consensus [============> ] 0.658463 s [racon::Polisher::polish] generating consensus [=============> ] 0.798459 s [racon::Polisher::polish] generating consensus [==============> ] 0.894470 s [racon::Polisher::polish] generating consensus [===============> ] 0.978486 s [racon::Polisher::polish] generating consensus [================> ] 1.038549 s [racon::Polisher::polish] generating consensus [=================> ] 1.058502 s [racon::Polisher::polish] generating consensus [==================> ] 1.058568 s [racon::Polisher::polish] generating consensus [===================>] 1.070504 s [racon::Polisher::polish] generating consensus [====================] 1.115480 s +[racon::Polisher::] total = 1.315603 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (1338 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.000603 s -[racon::Polisher::initialize] loaded sequences 0.019635 s -[racon::Polisher::initialize] loaded overlaps 0.029519 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.002741 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002944 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.003194 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.003370 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.003516 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.003695 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.004015 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.004303 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.004439 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.004633 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.004827 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.005169 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.005302 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.005528 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.005764 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.005945 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.005957 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.006042 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.006122 s [racon::Polisher::initialize] aligning overlaps [====================] 0.006217 s -[racon::Polisher::initialize] transformed data into windows 0.000678 s -[racon::Polisher::polish] generating consensus [=> ] 0.040212 s [racon::Polisher::polish] generating consensus [==> ] 0.079393 s [racon::Polisher::polish] generating consensus [===> ] 0.117976 s [racon::Polisher::polish] generating consensus [====> ] 0.148188 s [racon::Polisher::polish] generating consensus [=====> ] 0.169697 s [racon::Polisher::polish] generating consensus [======> ] 0.189711 s [racon::Polisher::polish] generating consensus [=======> ] 0.211994 s [racon::Polisher::polish] generating consensus [========> ] 0.239476 s [racon::Polisher::polish] generating consensus [=========> ] 0.263420 s [racon::Polisher::polish] generating consensus [==========> ] 0.303427 s [racon::Polisher::polish] generating consensus [===========> ] 0.350565 s [racon::Polisher::polish] generating consensus [============> ] 0.411484 s [racon::Polisher::polish] generating consensus [=============> ] 0.494881 s [racon::Polisher::polish] generating consensus [==============> ] 0.579205 s [racon::Polisher::polish] generating consensus [===============> ] 0.655593 s [racon::Polisher::polish] generating consensus [================> ] 0.723494 s [racon::Polisher::polish] generating consensus [=================> ] 0.791017 s [racon::Polisher::polish] generating consensus [==================> ] 0.823430 s [racon::Polisher::polish] generating consensus [===================>] 0.863467 s [racon::Polisher::polish] generating consensus [====================] 1.023250 s -[racon::Polisher::] total = 1.093261 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (1097 ms) +[racon::Polisher::initialize] loaded target sequences 0.000628 s +[racon::Polisher::initialize] loaded sequences 0.042924 s +[racon::Polisher::initialize] loaded overlaps 0.038277 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.015077 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.015112 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.015125 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.015138 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.015150 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.015162 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.015174 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.015187 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.015202 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.015214 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.015228 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.015241 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.015254 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.015267 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.015294 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.015307 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.015320 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.015332 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.015346 s [racon::Polisher::initialize] aligning overlaps [====================] 0.015359 s +[racon::Polisher::initialize] transformed data into windows 0.000743 s +[racon::Polisher::polish] generating consensus [=> ] 0.090945 s [racon::Polisher::polish] generating consensus [==> ] 0.170950 s [racon::Polisher::polish] generating consensus [===> ] 0.250867 s [racon::Polisher::polish] generating consensus [====> ] 0.314924 s [racon::Polisher::polish] generating consensus [=====> ] 0.362879 s [racon::Polisher::polish] generating consensus [======> ] 0.398887 s [racon::Polisher::polish] generating consensus [=======> ] 0.446899 s [racon::Polisher::polish] generating consensus [========> ] 0.494938 s [racon::Polisher::polish] generating consensus [=========> ] 0.554872 s [racon::Polisher::polish] generating consensus [==========> ] 0.638912 s [racon::Polisher::polish] generating consensus [===========> ] 0.730892 s [racon::Polisher::polish] generating consensus [============> ] 0.862888 s [racon::Polisher::polish] generating consensus [=============> ] 1.042898 s [racon::Polisher::polish] generating consensus [==============> ] 1.234881 s [racon::Polisher::polish] generating consensus [===============> ] 1.354881 s [racon::Polisher::polish] generating consensus [================> ] 1.371034 s [racon::Polisher::polish] generating consensus [=================> ] 1.482869 s [racon::Polisher::polish] generating consensus [==================> ] 1.482916 s [racon::Polisher::polish] generating consensus [===================>] 1.482939 s [racon::Polisher::polish] generating consensus [====================] 1.539575 s +[racon::Polisher::] total = 1.662616 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (1671 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.000669 s -[racon::Polisher::initialize] loaded sequences 0.052089 s -[racon::Polisher::initialize] loaded overlaps 0.000507 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.032248 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.049322 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.072299 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.088281 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.108491 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.127360 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.170973 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.192582 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.210243 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.226076 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.253194 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.266687 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.287118 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.297658 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.311679 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.341031 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.351539 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.368498 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.391116 s [racon::Polisher::initialize] aligning overlaps [====================] 0.397477 s -[racon::Polisher::initialize] transformed data into windows 0.002709 s -[racon::Polisher::polish] generating consensus [=> ] 0.147102 s [racon::Polisher::polish] generating consensus [==> ] 0.147515 s [racon::Polisher::polish] generating consensus [===> ] 0.276811 s [racon::Polisher::polish] generating consensus [====> ] 0.276873 s [racon::Polisher::polish] generating consensus [=====> ] 0.342394 s [racon::Polisher::polish] generating consensus [======> ] 0.342433 s [racon::Polisher::polish] generating consensus [=======> ] 0.397989 s [racon::Polisher::polish] generating consensus [========> ] 0.398065 s [racon::Polisher::polish] generating consensus [=========> ] 0.488766 s [racon::Polisher::polish] generating consensus [==========> ] 0.488803 s [racon::Polisher::polish] generating consensus [===========> ] 0.655403 s [racon::Polisher::polish] generating consensus [============> ] 0.669399 s [racon::Polisher::polish] generating consensus [=============> ] 0.972202 s [racon::Polisher::polish] generating consensus [==============> ] 0.972242 s [racon::Polisher::polish] generating consensus [===============> ] 1.162185 s [racon::Polisher::polish] generating consensus [================> ] 1.162282 s [racon::Polisher::polish] generating consensus [=================> ] 1.283290 s [racon::Polisher::polish] generating consensus [==================> ] 1.412856 s [racon::Polisher::polish] generating consensus [===================>] 1.412905 s [racon::Polisher::polish] generating consensus [====================] 1.658789 s -[racon::Polisher::] total = 2.131599 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (2135 ms) +[racon::Polisher::initialize] loaded target sequences 0.000778 s +[racon::Polisher::initialize] loaded sequences 0.098165 s +[racon::Polisher::initialize] loaded overlaps 0.000418 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.121614 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.165609 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.193611 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.233608 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.253607 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.269599 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.321613 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.361587 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.369608 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.397604 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.433596 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.465607 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.497590 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.513605 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.534148 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.553594 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.590323 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.617595 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.617627 s [racon::Polisher::initialize] aligning overlaps [====================] 0.621603 s +[racon::Polisher::initialize] transformed data into windows 0.002566 s +[racon::Polisher::polish] generating consensus [=> ] 0.309383 s [racon::Polisher::polish] generating consensus [==> ] 0.309433 s [racon::Polisher::polish] generating consensus [===> ] 0.589393 s [racon::Polisher::polish] generating consensus [====> ] 0.589479 s [racon::Polisher::polish] generating consensus [=====> ] 0.733389 s [racon::Polisher::polish] generating consensus [======> ] 0.733454 s [racon::Polisher::polish] generating consensus [=======> ] 0.861334 s [racon::Polisher::polish] generating consensus [========> ] 0.861421 s [racon::Polisher::polish] generating consensus [=========> ] 1.053370 s [racon::Polisher::polish] generating consensus [==========> ] 1.053421 s [racon::Polisher::polish] generating consensus [===========> ] 1.405363 s [racon::Polisher::polish] generating consensus [============> ] 1.433365 s [racon::Polisher::polish] generating consensus [=============> ] 2.089387 s [racon::Polisher::polish] generating consensus [==============> ] 2.089438 s [racon::Polisher::polish] generating consensus [===============> ] 2.501378 s [racon::Polisher::polish] generating consensus [================> ] 2.501504 s [racon::Polisher::polish] generating consensus [=================> ] 2.525384 s [racon::Polisher::polish] generating consensus [==================> ] 2.525451 s [racon::Polisher::polish] generating consensus [===================>] 2.569332 s [racon::Polisher::polish] generating consensus [====================] 2.773439 s +[racon::Polisher::] total = 3.531723 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (3541 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.000584 s -[racon::Polisher::initialize] loaded sequences 0.044938 s -[racon::Polisher::initialize] loaded overlaps 0.000459 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.032185 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.048769 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.068847 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.084788 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.104792 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.124781 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.163693 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.184104 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.200448 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.214587 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.235262 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.253215 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.272874 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.283102 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.299394 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.342327 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.352932 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.373344 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.389816 s [racon::Polisher::initialize] aligning overlaps [====================] 0.403814 s -[racon::Polisher::initialize] transformed data into windows 0.002783 s -[racon::Polisher::polish] generating consensus [=> ] 0.036712 s [racon::Polisher::polish] generating consensus [==> ] 0.074073 s [racon::Polisher::polish] generating consensus [===> ] 0.098889 s [racon::Polisher::polish] generating consensus [====> ] 0.119955 s [racon::Polisher::polish] generating consensus [=====> ] 0.138337 s [racon::Polisher::polish] generating consensus [======> ] 0.155095 s [racon::Polisher::polish] generating consensus [=======> ] 0.170621 s [racon::Polisher::polish] generating consensus [========> ] 0.188696 s [racon::Polisher::polish] generating consensus [=========> ] 0.211525 s [racon::Polisher::polish] generating consensus [==========> ] 0.236104 s [racon::Polisher::polish] generating consensus [===========> ] 0.278053 s [racon::Polisher::polish] generating consensus [============> ] 0.331235 s [racon::Polisher::polish] generating consensus [=============> ] 0.401077 s [racon::Polisher::polish] generating consensus [==============> ] 0.469099 s [racon::Polisher::polish] generating consensus [===============> ] 0.519990 s [racon::Polisher::polish] generating consensus [================> ] 0.558090 s [racon::Polisher::polish] generating consensus [=================> ] 0.601655 s [racon::Polisher::polish] generating consensus [==================> ] 0.630120 s [racon::Polisher::polish] generating consensus [===================>] 0.662953 s [racon::Polisher::polish] generating consensus [====================] 0.764269 s -[racon::Polisher::] total = 1.233178 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (1236 ms) +[racon::Polisher::initialize] loaded target sequences 0.000626 s +[racon::Polisher::initialize] loaded sequences 0.097245 s +[racon::Polisher::initialize] loaded overlaps 0.000403 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.085078 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.105088 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.137059 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.173078 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.201066 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.220952 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.265083 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.313067 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.329076 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.361072 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.385089 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.441075 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.465097 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.497099 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.541076 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.573098 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.597104 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.601076 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.617082 s [racon::Polisher::initialize] aligning overlaps [====================] 0.621086 s +[racon::Polisher::initialize] transformed data into windows 0.002765 s +[racon::Polisher::polish] generating consensus [=> ] 0.085174 s [racon::Polisher::polish] generating consensus [==> ] 0.157155 s [racon::Polisher::polish] generating consensus [===> ] 0.233103 s [racon::Polisher::polish] generating consensus [====> ] 0.261162 s [racon::Polisher::polish] generating consensus [=====> ] 0.293123 s [racon::Polisher::polish] generating consensus [======> ] 0.313118 s [racon::Polisher::polish] generating consensus [=======> ] 0.341126 s [racon::Polisher::polish] generating consensus [========> ] 0.365175 s [racon::Polisher::polish] generating consensus [=========> ] 0.405134 s [racon::Polisher::polish] generating consensus [==========> ] 0.469108 s [racon::Polisher::polish] generating consensus [===========> ] 0.557124 s [racon::Polisher::polish] generating consensus [============> ] 0.645147 s [racon::Polisher::polish] generating consensus [=============> ] 0.765120 s [racon::Polisher::polish] generating consensus [==============> ] 0.917126 s [racon::Polisher::polish] generating consensus [===============> ] 1.005133 s [racon::Polisher::polish] generating consensus [================> ] 1.021193 s [racon::Polisher::polish] generating consensus [=================> ] 1.057106 s [racon::Polisher::polish] generating consensus [==================> ] 1.061120 s [racon::Polisher::polish] generating consensus [===================>] 1.061170 s [racon::Polisher::polish] generating consensus [====================] 1.129226 s +[racon::Polisher::] total = 1.874098 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (1882 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.050112 s -[racon::Polisher::initialize] loaded sequences 0.051479 s -[racon::Polisher::initialize] loaded overlaps 0.017204 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.041749 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.068705 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.078778 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.096379 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.113955 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.131392 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.158455 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.174461 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.198458 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.217608 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.239608 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.273632 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.297820 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.325189 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.346476 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.373961 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.391965 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.416909 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.445190 s [racon::Polisher::initialize] aligning overlaps [====================] 0.466160 s -[racon::Polisher::initialize] transformed data into windows 0.005685 s -[racon::Polisher::polish] generating consensus [=> ] 0.036338 s [racon::Polisher::polish] generating consensus [==> ] 0.067677 s [racon::Polisher::polish] generating consensus [===> ] 0.102094 s [racon::Polisher::polish] generating consensus [====> ] 0.102430 s [racon::Polisher::polish] generating consensus [=====> ] 0.122543 s [racon::Polisher::polish] generating consensus [======> ] 0.136082 s [racon::Polisher::polish] generating consensus [=======> ] 0.157961 s [racon::Polisher::polish] generating consensus [========> ] 0.166673 s [racon::Polisher::polish] generating consensus [=========> ] 0.206209 s [racon::Polisher::polish] generating consensus [==========> ] 0.224601 s [racon::Polisher::polish] generating consensus [===========> ] 0.241438 s [racon::Polisher::polish] generating consensus [============> ] 0.247466 s [racon::Polisher::polish] generating consensus [=============> ] 0.269468 s [racon::Polisher::polish] generating consensus [==============> ] 0.278622 s [racon::Polisher::polish] generating consensus [===============> ] 0.314133 s [racon::Polisher::polish] generating consensus [================> ] 0.314868 s [racon::Polisher::polish] generating consensus [=================> ] 0.395959 s [racon::Polisher::polish] generating consensus [==================> ] 0.427540 s [racon::Polisher::polish] generating consensus [===================>] 0.459210 s [racon::Polisher::polish] generating consensus [====================] 0.465434 s -[racon::Polisher::] total = 1.056726 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (1060 ms) +[racon::Polisher::initialize] loaded target sequences 0.098562 s +[racon::Polisher::initialize] loaded sequences 0.103086 s +[racon::Polisher::initialize] loaded overlaps 0.031304 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.099911 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.131925 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.171916 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.203912 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.235904 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.267932 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.323903 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.355942 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.403919 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.439900 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.471920 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.499929 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.515940 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.535908 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.563907 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.571916 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.583909 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.607909 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.627923 s [racon::Polisher::initialize] aligning overlaps [====================] 0.663908 s +[racon::Polisher::initialize] transformed data into windows 0.012929 s +[racon::Polisher::polish] generating consensus [=> ] 0.075092 s [racon::Polisher::polish] generating consensus [==> ] 0.131213 s [racon::Polisher::polish] generating consensus [===> ] 0.207200 s [racon::Polisher::polish] generating consensus [====> ] 0.207395 s [racon::Polisher::polish] generating consensus [=====> ] 0.243121 s [racon::Polisher::polish] generating consensus [======> ] 0.278977 s [racon::Polisher::polish] generating consensus [=======> ] 0.315147 s [racon::Polisher::polish] generating consensus [========> ] 0.323185 s [racon::Polisher::polish] generating consensus [=========> ] 0.398999 s [racon::Polisher::polish] generating consensus [==========> ] 0.430955 s [racon::Polisher::polish] generating consensus [===========> ] 0.459096 s [racon::Polisher::polish] generating consensus [============> ] 0.475075 s [racon::Polisher::polish] generating consensus [=============> ] 0.507096 s [racon::Polisher::polish] generating consensus [==============> ] 0.511001 s [racon::Polisher::polish] generating consensus [===============> ] 0.599215 s [racon::Polisher::polish] generating consensus [================> ] 0.599672 s [racon::Polisher::polish] generating consensus [=================> ] 0.706958 s [racon::Polisher::polish] generating consensus [==================> ] 0.723346 s [racon::Polisher::polish] generating consensus [===================>] 0.723599 s [racon::Polisher::polish] generating consensus [====================] 0.735038 s +[racon::Polisher::] total = 1.645755 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (1655 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.048603 s -[racon::Polisher::initialize] loaded sequences 0.048429 s -[racon::Polisher::initialize] loaded overlaps 0.013442 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.517336 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.866941 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.217862 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.690955 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.103684 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.398837 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.793535 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.295113 s [racon::Polisher::initialize] aligning overlaps [=========> ] 3.759103 s [racon::Polisher::initialize] aligning overlaps [==========> ] 4.229855 s [racon::Polisher::initialize] aligning overlaps [===========> ] 4.590540 s [racon::Polisher::initialize] aligning overlaps [============> ] 5.104262 s [racon::Polisher::initialize] aligning overlaps [=============> ] 5.624662 s [racon::Polisher::initialize] aligning overlaps [==============> ] 6.055426 s [racon::Polisher::initialize] aligning overlaps [===============> ] 6.650940 s [racon::Polisher::initialize] aligning overlaps [================> ] 7.186913 s [racon::Polisher::initialize] aligning overlaps [=================> ] 7.664980 s [racon::Polisher::initialize] aligning overlaps [==================> ] 8.175446 s [racon::Polisher::initialize] aligning overlaps [===================>] 8.680806 s [racon::Polisher::initialize] aligning overlaps [====================] 9.005170 s -[racon::Polisher::initialize] transformed data into windows 0.087237 s -[racon::Polisher::polish] generating consensus [=> ] 1.520120 s [racon::Polisher::polish] generating consensus [==> ] 2.602204 s [racon::Polisher::polish] generating consensus [===> ] 3.717444 s [racon::Polisher::polish] generating consensus [====> ] 4.684347 s [racon::Polisher::polish] generating consensus [=====> ] 5.797150 s [racon::Polisher::polish] generating consensus [======> ] 7.012775 s [racon::Polisher::polish] generating consensus [=======> ] 8.194356 s [racon::Polisher::polish] generating consensus [========> ] 9.140102 s [racon::Polisher::polish] generating consensus [=========> ] 10.231367 s [racon::Polisher::polish] generating consensus [==========> ] 11.610723 s [racon::Polisher::polish] generating consensus [===========> ] 12.748016 s [racon::Polisher::polish] generating consensus [============> ] 13.977818 s [racon::Polisher::polish] generating consensus [=============> ] 15.123571 s [racon::Polisher::polish] generating consensus [==============> ] 16.377204 s [racon::Polisher::polish] generating consensus [===============> ] 17.596914 s [racon::Polisher::polish] generating consensus [================> ] 18.335503 s [racon::Polisher::polish] generating consensus [=================> ] 19.657551 s [racon::Polisher::polish] generating consensus [==================> ] 20.929148 s [racon::Polisher::polish] generating consensus [===================>] 21.568363 s [racon::Polisher::polish] generating consensus [====================] 21.820727 s -[racon::Polisher::] total = 31.028169 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (31031 ms) +[racon::Polisher::initialize] loaded target sequences 0.098418 s +[racon::Polisher::initialize] loaded sequences 0.096906 s +[racon::Polisher::initialize] loaded overlaps 0.029581 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.952230 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.612217 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.216214 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.112241 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.752231 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.324200 s [racon::Polisher::initialize] aligning overlaps [=======> ] 5.052201 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.719046 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.720208 s [racon::Polisher::initialize] aligning overlaps [==========> ] 7.468212 s [racon::Polisher::initialize] aligning overlaps [===========> ] 8.116197 s [racon::Polisher::initialize] aligning overlaps [============> ] 8.628215 s [racon::Polisher::initialize] aligning overlaps [=============> ] 9.112231 s [racon::Polisher::initialize] aligning overlaps [==============> ] 9.836231 s [racon::Polisher::initialize] aligning overlaps [===============> ] 10.468210 s [racon::Polisher::initialize] aligning overlaps [================> ] 10.980192 s [racon::Polisher::initialize] aligning overlaps [=================> ] 11.464208 s [racon::Polisher::initialize] aligning overlaps [==================> ] 11.980220 s [racon::Polisher::initialize] aligning overlaps [===================>] 12.292204 s [racon::Polisher::initialize] aligning overlaps [====================] 12.434525 s +[racon::Polisher::initialize] transformed data into windows 0.087576 s +[racon::Polisher::polish] generating consensus [=> ] 2.715305 s [racon::Polisher::polish] generating consensus [==> ] 4.635314 s [racon::Polisher::polish] generating consensus [===> ] 6.811472 s [racon::Polisher::polish] generating consensus [====> ] 9.459424 s [racon::Polisher::polish] generating consensus [=====> ] 11.187342 s [racon::Polisher::polish] generating consensus [======> ] 12.331334 s [racon::Polisher::polish] generating consensus [=======> ] 13.623308 s [racon::Polisher::polish] generating consensus [========> ] 14.447308 s [racon::Polisher::polish] generating consensus [=========> ] 15.499321 s [racon::Polisher::polish] generating consensus [==========> ] 17.091319 s [racon::Polisher::polish] generating consensus [===========> ] 18.203362 s [racon::Polisher::polish] generating consensus [============> ] 19.903408 s [racon::Polisher::polish] generating consensus [=============> ] 20.967316 s [racon::Polisher::polish] generating consensus [==============> ] 22.942876 s [racon::Polisher::polish] generating consensus [===============> ] 24.399301 s [racon::Polisher::polish] generating consensus [================> ] 25.011344 s [racon::Polisher::polish] generating consensus [=================> ] 26.823281 s [racon::Polisher::polish] generating consensus [==================> ] 28.063327 s [racon::Polisher::polish] generating consensus [===================>] 28.887298 s [racon::Polisher::polish] generating consensus [====================] 29.435388 s +[racon::Polisher::] total = 42.187061 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (42195 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.023426 s -[racon::Polisher::initialize] loaded sequences 0.020398 s -[racon::Polisher::initialize] loaded overlaps 0.016058 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.849657 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.201656 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.545669 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.073667 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.409664 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.741656 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.141659 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.677670 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.225665 s [racon::Polisher::initialize] aligning overlaps [==========> ] 4.677661 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.125658 s [racon::Polisher::initialize] aligning overlaps [============> ] 5.749688 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.325676 s [racon::Polisher::initialize] aligning overlaps [==============> ] 6.821665 s [racon::Polisher::initialize] aligning overlaps [===============> ] 7.397673 s [racon::Polisher::initialize] aligning overlaps [================> ] 8.029675 s [racon::Polisher::initialize] aligning overlaps [=================> ] 8.553673 s [racon::Polisher::initialize] aligning overlaps [==================> ] 9.053686 s [racon::Polisher::initialize] aligning overlaps [===================>] 9.653690 s [racon::Polisher::initialize] aligning overlaps [====================] 10.015704 s -[racon::Polisher::initialize] transformed data into windows 0.025040 s -[racon::Polisher::polish] generating consensus [=> ] 2.333779 s [racon::Polisher::polish] generating consensus [==> ] 4.177773 s [racon::Polisher::polish] generating consensus [===> ] 5.805832 s [racon::Polisher::polish] generating consensus [====> ] 7.061845 s [racon::Polisher::polish] generating consensus [=====> ] 8.789792 s [racon::Polisher::polish] generating consensus [======> ] 10.545763 s [racon::Polisher::polish] generating consensus [=======> ] 12.365776 s [racon::Polisher::polish] generating consensus [========> ] 14.025774 s [racon::Polisher::polish] generating consensus [=========> ] 15.777758 s [racon::Polisher::polish] generating consensus [==========> ] 17.813777 s [racon::Polisher::polish] generating consensus [===========> ] 20.237817 s [racon::Polisher::polish] generating consensus [============> ] 23.458238 s [racon::Polisher::polish] generating consensus [=============> ] 25.493772 s [racon::Polisher::polish] generating consensus [==============> ] 27.765751 s [racon::Polisher::polish] generating consensus [===============> ] 29.535471 s [racon::Polisher::polish] generating consensus [================> ] 30.532329 s [racon::Polisher::polish] generating consensus [=================> ] 33.957991 s [racon::Polisher::polish] generating consensus [==================> ] 35.809871 s [racon::Polisher::polish] generating consensus [===================>] 37.433774 s [racon::Polisher::polish] generating consensus [====================] 38.352815 s -[racon::Polisher::] total = 48.457649 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (48465 ms) +[racon::Polisher::initialize] loaded target sequences 0.042456 s +[racon::Polisher::initialize] loaded sequences 0.042238 s +[racon::Polisher::initialize] loaded overlaps 0.030821 s +[racon::Polisher::initialize] aligning overlaps [=> ] 1.041637 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.673663 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.265662 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.081658 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.662308 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.221639 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.889646 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.429614 s [racon::Polisher::initialize] aligning overlaps [=========> ] 5.861624 s [racon::Polisher::initialize] aligning overlaps [==========> ] 6.309629 s [racon::Polisher::initialize] aligning overlaps [===========> ] 6.917634 s [racon::Polisher::initialize] aligning overlaps [============> ] 7.497650 s [racon::Polisher::initialize] aligning overlaps [=============> ] 8.089671 s [racon::Polisher::initialize] aligning overlaps [==============> ] 8.669695 s [racon::Polisher::initialize] aligning overlaps [===============> ] 9.221925 s [racon::Polisher::initialize] aligning overlaps [================> ] 9.965621 s [racon::Polisher::initialize] aligning overlaps [=================> ] 10.845619 s [racon::Polisher::initialize] aligning overlaps [==================> ] 11.805665 s [racon::Polisher::initialize] aligning overlaps [===================>] 12.393662 s [racon::Polisher::initialize] aligning overlaps [====================] 12.546042 s +[racon::Polisher::initialize] transformed data into windows 0.022239 s +[racon::Polisher::polish] generating consensus [=> ] 3.506857 s [racon::Polisher::polish] generating consensus [==> ] 5.814873 s [racon::Polisher::polish] generating consensus [===> ] 7.478910 s [racon::Polisher::polish] generating consensus [====> ] 8.726920 s [racon::Polisher::polish] generating consensus [=====> ] 11.354862 s [racon::Polisher::polish] generating consensus [======> ] 13.542867 s [racon::Polisher::polish] generating consensus [=======> ] 15.962857 s [racon::Polisher::polish] generating consensus [========> ] 17.386861 s [racon::Polisher::polish] generating consensus [=========> ] 19.178852 s [racon::Polisher::polish] generating consensus [==========> ] 21.742862 s [racon::Polisher::polish] generating consensus [===========> ] 23.866937 s [racon::Polisher::polish] generating consensus [============> ] 26.238959 s [racon::Polisher::polish] generating consensus [=============> ] 28.050849 s [racon::Polisher::polish] generating consensus [==============> ] 31.086872 s [racon::Polisher::polish] generating consensus [===============> ] 33.430917 s [racon::Polisher::polish] generating consensus [================> ] 35.111053 s [racon::Polisher::polish] generating consensus [=================> ] 37.102836 s [racon::Polisher::polish] generating consensus [==================> ] 40.190937 s [racon::Polisher::polish] generating consensus [===================>] 41.882850 s [racon::Polisher::polish] generating consensus [====================] 42.804986 s +[racon::Polisher::] total = 55.492289 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (55496 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.055483 s -[racon::Polisher::initialize] loaded sequences 0.055659 s -[racon::Polisher::initialize] loaded overlaps 0.015371 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.805645 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.165670 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.497647 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.977655 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.341645 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.749675 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.153659 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.633645 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.313656 s [racon::Polisher::initialize] aligning overlaps [==========> ] 4.729649 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.089648 s [racon::Polisher::initialize] aligning overlaps [============> ] 5.641657 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.201659 s [racon::Polisher::initialize] aligning overlaps [==============> ] 6.713660 s [racon::Polisher::initialize] aligning overlaps [===============> ] 7.329685 s [racon::Polisher::initialize] aligning overlaps [================> ] 8.021651 s [racon::Polisher::initialize] aligning overlaps [=================> ] 8.577650 s [racon::Polisher::initialize] aligning overlaps [==================> ] 9.113630 s [racon::Polisher::initialize] aligning overlaps [===================>] 9.657648 s [racon::Polisher::initialize] aligning overlaps [====================] 9.871427 s -[racon::Polisher::initialize] transformed data into windows 0.080497 s -[racon::Polisher::polish] generating consensus [=> ] 1.531760 s [racon::Polisher::polish] generating consensus [==> ] 2.666838 s [racon::Polisher::polish] generating consensus [===> ] 3.864101 s [racon::Polisher::polish] generating consensus [====> ] 4.856275 s [racon::Polisher::polish] generating consensus [=====> ] 5.942298 s [racon::Polisher::polish] generating consensus [======> ] 7.202177 s [racon::Polisher::polish] generating consensus [=======> ] 8.460497 s [racon::Polisher::polish] generating consensus [========> ] 9.378907 s [racon::Polisher::polish] generating consensus [=========> ] 10.579095 s [racon::Polisher::polish] generating consensus [==========> ] 11.963519 s [racon::Polisher::polish] generating consensus [===========> ] 13.136618 s [racon::Polisher::polish] generating consensus [============> ] 14.397732 s [racon::Polisher::polish] generating consensus [=============> ] 15.466823 s [racon::Polisher::polish] generating consensus [==============> ] 16.662182 s [racon::Polisher::polish] generating consensus [===============> ] 17.952302 s [racon::Polisher::polish] generating consensus [================> ] 18.657981 s [racon::Polisher::polish] generating consensus [=================> ] 20.073702 s [racon::Polisher::polish] generating consensus [==================> ] 21.389644 s [racon::Polisher::polish] generating consensus [===================>] 22.659932 s [racon::Polisher::polish] generating consensus [====================] 23.641078 s -[racon::Polisher::] total = 33.722617 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (33726 ms) -[----------] 10 tests from RaconPolishingTest (122510 ms total) +[racon::Polisher::initialize] loaded target sequences 0.048382 s +[racon::Polisher::initialize] loaded sequences 0.047949 s +[racon::Polisher::initialize] loaded overlaps 0.013666 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.606260 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.954229 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.238267 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.654232 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.970244 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.238249 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.586254 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.006253 s [racon::Polisher::initialize] aligning overlaps [=========> ] 3.486208 s [racon::Polisher::initialize] aligning overlaps [==========> ] 3.846185 s [racon::Polisher::initialize] aligning overlaps [===========> ] 4.170193 s [racon::Polisher::initialize] aligning overlaps [============> ] 4.594227 s [racon::Polisher::initialize] aligning overlaps [=============> ] 5.073524 s [racon::Polisher::initialize] aligning overlaps [==============> ] 5.512844 s [racon::Polisher::initialize] aligning overlaps [===============> ] 5.966387 s [racon::Polisher::initialize] aligning overlaps [================> ] 6.474214 s [racon::Polisher::initialize] aligning overlaps [=================> ] 6.919537 s [racon::Polisher::initialize] aligning overlaps [==================> ] 7.349719 s [racon::Polisher::initialize] aligning overlaps [===================>] 7.776184 s [racon::Polisher::initialize] aligning overlaps [====================] 8.079964 s +[racon::Polisher::initialize] transformed data into windows 0.073660 s +[racon::Polisher::polish] generating consensus [=> ] 1.292644 s [racon::Polisher::polish] generating consensus [==> ] 2.241736 s [racon::Polisher::polish] generating consensus [===> ] 3.221108 s [racon::Polisher::polish] generating consensus [====> ] 4.062828 s [racon::Polisher::polish] generating consensus [=====> ] 5.578872 s [racon::Polisher::polish] generating consensus [======> ] 6.616935 s [racon::Polisher::polish] generating consensus [=======> ] 7.536402 s [racon::Polisher::polish] generating consensus [========> ] 8.239707 s [racon::Polisher::polish] generating consensus [=========> ] 9.327299 s [racon::Polisher::polish] generating consensus [==========> ] 11.118750 s [racon::Polisher::polish] generating consensus [===========> ] 12.475236 s [racon::Polisher::polish] generating consensus [============> ] 13.540911 s [racon::Polisher::polish] generating consensus [=============> ] 14.428564 s [racon::Polisher::polish] generating consensus [==============> ] 15.301239 s [racon::Polisher::polish] generating consensus [===============> ] 16.316349 s [racon::Polisher::polish] generating consensus [================> ] 16.847786 s [racon::Polisher::polish] generating consensus [=================> ] 17.942721 s [racon::Polisher::polish] generating consensus [==================> ] 18.957735 s [racon::Polisher::polish] generating consensus [===================>] 19.954760 s [racon::Polisher::polish] generating consensus [====================] 20.414948 s +[racon::Polisher::] total = 28.682480 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (28685 ms) +[----------] 10 tests from RaconPolishingTest (140829 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (122527 ms total) +[==========] 15 tests from 2 test suites ran. (140904 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/racon-1.5.0 -B/build/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -782,8 +825,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_amd64.deb'. +dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -791,12 +834,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2015742 and its subdirectories -I: Current time: Mon May 22 05:20:50 -12 2023 -I: pbuilder-time-stamp: 1684776050 +I: removing directory /srv/workspace/pbuilder/1252620 and its subdirectories +I: Current time: Mon Jun 24 13:48:10 +14 2024 +I: pbuilder-time-stamp: 1719186490