Diff of the two buildlogs: -- --- b1/build.log 2023-05-03 11:14:16.050728961 +0000 +++ b2/build.log 2023-05-03 11:28:50.748333945 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 2 22:54:48 -12 2023 -I: pbuilder-time-stamp: 1683111288 +I: Current time: Wed Jun 5 07:37:20 +14 2024 +I: pbuilder-time-stamp: 1717522640 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./plastimatch_1.9.4+dfsg.1.orig.tar.xz] I: copying [./plastimatch_1.9.4+dfsg.1-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Tue Nov 22 07:43:04 2022 -12 +gpgv: Signature made Wed Nov 23 09:43:04 2022 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@emlwks999.eu" gpgv: Can't check signature: No public key @@ -28,135 +28,167 @@ dpkg-source: info: unpacking plastimatch_1.9.4+dfsg.1-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3373719/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3239613/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 5 07:37 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3239613/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3239613/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='07b2862086234c749369974c5a949edc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3373719' - PS1='# ' - PS2='> ' + INVOCATION_ID=d89039d843284699bf311f09091293b9 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3239613 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vq3gAO5J/pbuilderrc_6lLk --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vq3gAO5J/b1 --logfile b1/build.log plastimatch_1.9.4+dfsg.1-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vq3gAO5J/pbuilderrc_0Mnk --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vq3gAO5J/b2 --logfile b2/build.log --extrapackages usrmerge plastimatch_1.9.4+dfsg.1-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos1-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more - -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount - -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/3373719/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 2023 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 2023 more + -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount + -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Jun 5 07:37 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 2023 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/3239613/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -405,7 +437,7 @@ Get: 181 http://deb.debian.org/debian bookworm/main amd64 libinsighttoolkit5-dev amd64 5.2.1-5+b3 [3093 kB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 liblapack-dev amd64 3.11.0-2 [4631 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 uuid-dev amd64 2.38.1-5+b1 [39.9 kB] -Fetched 205 MB in 7s (31.0 MB/s) +Fetched 205 MB in 2s (87.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -1156,8 +1188,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/plastimatch-1.9.4+dfsg.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plastimatch_1.9.4+dfsg.1-1_source.changes +I: user script /srv/workspace/pbuilder/3239613/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/3239613/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/plastimatch-1.9.4+dfsg.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../plastimatch_1.9.4+dfsg.1-1_source.changes dpkg-buildpackage: info: source package plastimatch dpkg-buildpackage: info: source version 1.9.4+dfsg.1-1 dpkg-buildpackage: info: source distribution unstable @@ -1390,114 +1433,114 @@ -- Build files have been written to: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1' dh_auto_build - cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/plastimatch-1.9.4+dfsg.1 -B/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/depend -make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9 /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color= make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/depend make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/depend +make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/depend +make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend +make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend +make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9 /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color= +make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/libs/devillard /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake --color= -make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 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src/plastimatch/clp/CMakeFiles/plmclp.dir/depend -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 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src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build -[ 0%] Building C object libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -MF CMakeFiles/lbfgs.dir/lib/lbfgs.c.o.d -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/lib/lbfgs.c make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build -[ 1%] 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-I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o -MF CMakeFiles/plmsys.dir/dlib_threads.cxx.o.d -o 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-I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o -MF CMakeFiles/plmsys.dir/dir_list.cxx.o.d -o CMakeFiles/plmsys.dir/dir_list.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/dir_list.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o -MF CMakeFiles/plmsys.dir/file_util.cxx.o.d -o CMakeFiles/plmsys.dir/file_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/file_util.cxx -[ 2%] Building CXX object src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o -[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o +[ 0%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o -MF CMakeFiles/plmclp.dir/plm_clp.cxx.o.d -o CMakeFiles/plmclp.dir/plm_clp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp/plm_clp.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o -MF CMakeFiles/plmsys.dir/option_range.cxx.o.d -o CMakeFiles/plmsys.dir/option_range.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/option_range.cxx -[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o -MF CMakeFiles/plmsys.dir/dir_list.cxx.o.d -o CMakeFiles/plmsys.dir/dir_list.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/dir_list.cxx +[ 1%] Building C object libs/inih-r29/CMakeFiles/inih.dir/ini.c.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/inih-r29/CMakeFiles/inih.dir/ini.c.o -MF CMakeFiles/inih.dir/ini.c.o.d -o CMakeFiles/inih.dir/ini.c.o -c /build/plastimatch-1.9.4+dfsg.1/libs/inih-r29/ini.c +[ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o +[ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o +[ 1%] Building C object libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -MF CMakeFiles/lbfgs.dir/lib/lbfgs.c.o.d -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/lib/lbfgs.c +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o -MF CMakeFiles/plmsys.dir/dlib_threads.cxx.o.d -o CMakeFiles/plmsys.dir/dlib_threads.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/dlib_threads.cxx +[ 1%] Building CXX object libs/inih-r29/CMakeFiles/inih.dir/INIReader.cpp.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/inih-r29/CMakeFiles/inih.dir/INIReader.cpp.o -MF CMakeFiles/inih.dir/INIReader.cpp.o.d -o CMakeFiles/inih.dir/INIReader.cpp.o -c /build/plastimatch-1.9.4+dfsg.1/libs/inih-r29/INIReader.cpp cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o -MF CMakeFiles/plmsys.dir/logfile.cxx.o.d -o CMakeFiles/plmsys.dir/logfile.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/logfile.cxx +[ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o -MF CMakeFiles/plmsys.dir/option_range.cxx.o.d -o CMakeFiles/plmsys.dir/option_range.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/option_range.cxx +[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o -MF CMakeFiles/plmsys.dir/path_util.cxx.o.d -o CMakeFiles/plmsys.dir/path_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/path_util.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o -MF CMakeFiles/plmsys.dir/file_util.cxx.o.d -o CMakeFiles/plmsys.dir/file_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/file_util.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o -MF CMakeFiles/plmsys.dir/path_util.cxx.o.d -o CMakeFiles/plmsys.dir/path_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/path_util.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o -MF CMakeFiles/plmsys.dir/plm_endian.cxx.o.d -o CMakeFiles/plmsys.dir/plm_endian.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/plm_endian.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -MF CMakeFiles/plmsys.dir/plm_fwrite.cxx.o.d -o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/plm_fwrite.cxx [ 3%] Linking CXX static library ../../libdevillard.a cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -P CMakeFiles/devillard.dir/cmake_clean_target.cmake -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -E cmake_link_script CMakeFiles/devillard.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../libdevillard.a CMakeFiles/devillard.dir/wirth.cpp.o -/usr/bin/ranlib ../../libdevillard.a -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 3%] Built target devillard [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o -MF CMakeFiles/plmsys.dir/plm_sleep.cxx.o.d -o CMakeFiles/plmsys.dir/plm_sleep.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/plm_sleep.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -E cmake_link_script CMakeFiles/devillard.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../libdevillard.a CMakeFiles/devillard.dir/wirth.cpp.o [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o -MF CMakeFiles/plmsys.dir/plm_timer.cxx.o.d -o CMakeFiles/plmsys.dir/plm_timer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/plm_timer.cxx +/usr/bin/ranlib ../../libdevillard.a [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o -MF CMakeFiles/plmsys.dir/print_and_exit.cxx.o.d -o CMakeFiles/plmsys.dir/print_and_exit.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/print_and_exit.cxx +[ 4%] Built target devillard [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o -MF CMakeFiles/plmsys.dir/string_util.cxx.o.d -o CMakeFiles/plmsys.dir/string_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/string_util.cxx -[ 4%] Linking CXX static library ../../libnkidecompress.a -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -P CMakeFiles/nkidecompress.dir/cmake_clean_target.cmake [ 4%] Building C object src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cc -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o -MF CMakeFiles/plmsys.dir/delayload_legacy.c.o.d -o CMakeFiles/plmsys.dir/delayload_legacy.c.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/delayload_legacy.c +[ 4%] Linking CXX static library ../../libnkidecompress.a +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -P CMakeFiles/nkidecompress.dir/cmake_clean_target.cmake cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -E cmake_link_script CMakeFiles/nkidecompress.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../libnkidecompress.a CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -/usr/bin/ranlib ../../libnkidecompress.a -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 4%] Built target nkidecompress [ 4%] Linking C static library ../../libspecfun.a cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -P CMakeFiles/specfun.dir/cmake_clean_target.cmake +/usr/bin/ar qc ../../libnkidecompress.a CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -E cmake_link_script CMakeFiles/specfun.dir/link.txt --verbose=1 +/usr/bin/ranlib ../../libnkidecompress.a +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/ar qc ../../libspecfun.a CMakeFiles/specfun.dir/mpbdv.c.o /usr/bin/ranlib ../../libspecfun.a make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 4%] Built target nkidecompress [ 4%] Built target specfun [ 4%] Linking C static library ../../liblbfgs.a cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -P CMakeFiles/lbfgs.dir/cmake_clean_target.cmake @@ -1526,32 +1569,32 @@ make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 4%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o -MF CMakeFiles/plmbase.dir/aperture.cxx.o.d -o CMakeFiles/plmbase.dir/aperture.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/aperture.cxx [ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o -[ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o -MF CMakeFiles/plmbase.dir/astroid_dose.cxx.o.d -o CMakeFiles/plmbase.dir/astroid_dose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/astroid_dose.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o -MF CMakeFiles/plmbase.dir/beam_geometry.cxx.o.d -o CMakeFiles/plmbase.dir/beam_geometry.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/beam_geometry.cxx [ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o [ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o -MF CMakeFiles/plmbase.dir/aperture.cxx.o.d -o CMakeFiles/plmbase.dir/aperture.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/aperture.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o -MF CMakeFiles/plmbase.dir/astroid_dose.cxx.o.d -o CMakeFiles/plmbase.dir/astroid_dose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/astroid_dose.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o -MF CMakeFiles/plmbase.dir/bspline_header.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_header.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_header.cxx +[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o +[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o -MF CMakeFiles/plmbase.dir/beam_geometry.cxx.o.d -o CMakeFiles/plmbase.dir/beam_geometry.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/beam_geometry.cxx +[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o +[ 6%] Building CXX object 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-I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch 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-ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o -MF CMakeFiles/plmbase.dir/bspline_warp.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_warp.cxx -[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util 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-I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o -MF 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-I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces 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-I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o -MF CMakeFiles/plmbase.dir/cxt_extract.cxx.o.d -o CMakeFiles/plmbase.dir/cxt_extract.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/cxt_extract.cxx -[ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o -[ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o +[ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o +[ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o -MF CMakeFiles/plmbase.dir/cxt_io.cxx.o.d -o CMakeFiles/plmbase.dir/cxt_io.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/cxt_io.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -MF CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_xform_legacy.cxx +[ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o -MF CMakeFiles/plmbase.dir/dicom_probe.cxx.o.d -o CMakeFiles/plmbase.dir/dicom_probe.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dicom_probe.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o -MF CMakeFiles/plmbase.dir/direction_cosines.cxx.o.d -o CMakeFiles/plmbase.dir/direction_cosines.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/direction_cosines.cxx -[ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o -MF CMakeFiles/plmbase.dir/dicom_util.cxx.o.d -o CMakeFiles/plmbase.dir/dicom_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dicom_util.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o -MF CMakeFiles/plmbase.dir/direction_cosines.cxx.o.d -o CMakeFiles/plmbase.dir/direction_cosines.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/direction_cosines.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o -MF CMakeFiles/plmbase.dir/direction_matrices.cxx.o.d -o CMakeFiles/plmbase.dir/direction_matrices.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/direction_matrices.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o -MF CMakeFiles/plmbase.dir/exchkeys.cxx.o.d -o CMakeFiles/plmbase.dir/exchkeys.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/exchkeys.cxx @@ -1570,10 +1613,10 @@ cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o -MF CMakeFiles/plmbase.dir/hnd_io.cxx.o.d -o CMakeFiles/plmbase.dir/hnd_io.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/hnd_io.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o -MF CMakeFiles/plmbase.dir/image_stats.cxx.o.d -o CMakeFiles/plmbase.dir/image_stats.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/image_stats.cxx -[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o -MF CMakeFiles/plmbase.dir/interpolate.cxx.o.d -o CMakeFiles/plmbase.dir/interpolate.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/interpolate.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o -MF CMakeFiles/plmbase.dir/itk_bbox.cxx.o.d -o CMakeFiles/plmbase.dir/itk_bbox.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_bbox.cxx +[ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o -MF CMakeFiles/plmbase.dir/interpolate.cxx.o.d -o CMakeFiles/plmbase.dir/interpolate.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/interpolate.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o -MF CMakeFiles/plmbase.dir/itk_directions.cxx.o.d -o CMakeFiles/plmbase.dir/itk_directions.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_directions.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o @@ -1606,11 +1649,23 @@ cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint64.cxx +In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx:6: +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = double; typename itk::Image::Pointer = itk::SmartPointer >]': +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx:20:27: required from here +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] + 140 | "Error: unhandled file type for loading image (%d) %s\n", + | ~^ + | | + | int + 141 | componentType, fname); + | ~~~~~~~~~~~~~ + | | + | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx -In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx:6: -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = float; typename itk::Image::Pointer = itk::SmartPointer >]': -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx:20:27: required from here +In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx:6: +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = unsigned char; typename itk::Image::Pointer = itk::SmartPointer >]': +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ @@ -1632,9 +1687,9 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx:6: -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = double; typename itk::Image::Pointer = itk::SmartPointer >]': -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx:20:27: required from here +In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx:6: +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]': +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ @@ -1644,9 +1699,11 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx:6: -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = int; typename itk::Image::Pointer = itk::SmartPointer >]': -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx:20:27: required from here +[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_vec.cxx +In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx:6: +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = float; typename itk::Image::Pointer = itk::SmartPointer >]': +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ @@ -1668,9 +1725,11 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx:6: -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = unsigned char; typename itk::Image::Pointer = itk::SmartPointer >]': -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx:20:27: required from here +[ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_origin.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_origin.cxx +In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx:6: +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = int; typename itk::Image::Pointer = itk::SmartPointer >]': +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ @@ -1692,6 +1751,8 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} +[ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_region.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_region.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_region.cxx In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint64.cxx:6: /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = long unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint64.cxx:20:27: required from here @@ -1704,20 +1765,6 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_vec.cxx -In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx:6: -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]': -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx:20:27: required from here -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] - 140 | "Error: unhandled file type for loading image (%d) %s\n", - | ~^ - | | - | int - 141 | componentType, fname); - | ~~~~~~~~~~~~~ - | | - | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx:6: /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = short unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx:20:27: required from here @@ -1730,10 +1777,6 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -[ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_origin.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_origin.cxx -[ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_region.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_region.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_region.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_save.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_save.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_save.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_save.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_save.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o @@ -1764,12 +1807,12 @@ cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o -MF CMakeFiles/plmbase.dir/plm_file_format.cxx.o.d -o CMakeFiles/plmbase.dir/plm_file_format.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_file_format.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o -MF CMakeFiles/plmbase.dir/plm_image.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image.cxx -[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_convert.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image_convert.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_file_format.cxx: In function 'Plm_file_format plm_file_format_deduce(const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_file_format.cxx:97:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fgets (line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_convert.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image_convert.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_header.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_header.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image_header.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_set.cxx.o @@ -1780,18 +1823,16 @@ cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_warp.cxx.o -MF CMakeFiles/plmbase.dir/plm_warp.cxx.o.d -o CMakeFiles/plmbase.dir/plm_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_warp.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pointset.cxx.o -MF CMakeFiles/plmbase.dir/pointset.cxx.o.d -o CMakeFiles/plmbase.dir/pointset.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx +[ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o -MF CMakeFiles/plmbase.dir/pointset_warp.cxx.o.d -o CMakeFiles/plmbase.dir/pointset_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset_warp.cxx +[ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o -MF CMakeFiles/plmbase.dir/proj_image.cxx.o.d -o CMakeFiles/plmbase.dir/proj_image.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx: In member function 'void Pointset::load_fcsv(const char*) [with T = Labeled_point]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 65 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx: In member function 'void Pointset::load_fcsv(const char*) [with T = Point]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] -[ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o -MF CMakeFiles/plmbase.dir/pointset_warp.cxx.o.d -o CMakeFiles/plmbase.dir/pointset_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset_warp.cxx -[ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o -MF CMakeFiles/plmbase.dir/proj_image.cxx.o.d -o CMakeFiles/plmbase.dir/proj_image.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx -[ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -MF CMakeFiles/plmbase.dir/proj_image_dir.cxx.o.d -o CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image_dir.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx: In function 'void pfm_load(Proj_image*, const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx:175:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 175 | fgets (buf, 1024, fp); @@ -1802,6 +1843,8 @@ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx:190:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 190 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ +[ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -MF CMakeFiles/plmbase.dir/proj_image_dir.cxx.o.d -o CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image_dir.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_matrix.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_matrix.cxx.o -MF CMakeFiles/plmbase.dir/proj_matrix.cxx.o.d -o CMakeFiles/plmbase.dir/proj_matrix.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_matrix.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_volume.cxx.o @@ -1958,12 +2001,6 @@ cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_structures.cxx.o -MF CMakeFiles/plmbase.dir/xio_structures.cxx.o.d -o CMakeFiles/plmbase.dir/xio_structures.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_studyset.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_studyset.cxx.o -MF CMakeFiles/plmbase.dir/xio_studyset.cxx.o.d -o CMakeFiles/plmbase.dir/xio_studyset.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_studyset.cxx -[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o -MF CMakeFiles/plmbase.dir/xpm.cxx.o.d -o CMakeFiles/plmbase.dir/xpm.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xpm.cxx -[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_file.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_file.cxx -[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_image.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_image.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function 'void xform_legacy_save_itk_bsp(itk::BSplineDeformableTransform::Pointer, const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:230:40: warning: format '%d' expects argument of type 'int', but argument 2 has type 'itk::Transform::NumberOfParametersType' {aka 'long unsigned int'} [-Wformat=] 230 | printf (" # of parameters=%d\n", transform->GetBulkTransform()->GetNumberOfParameters()); @@ -1971,6 +2008,12 @@ | | | | int itk::Transform::NumberOfParametersType {aka long unsigned int} | %ld +[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o -MF CMakeFiles/plmbase.dir/xpm.cxx.o.d -o CMakeFiles/plmbase.dir/xpm.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xpm.cxx +[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_file.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_file.cxx +[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_image.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_image.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_metadata.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o @@ -1979,6 +2022,8 @@ cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rdd.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtdose.cxx +[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtss.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function 'void xform_legacy_load(Xform*, FILE*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:37:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 37 | fgets (buf,1024,fp); @@ -2004,8 +2049,6 @@ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:168:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 168 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ -[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtss.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx: In function 'void xio_dose_load_header(Xio_dose_header*, const char*)': @@ -2038,6 +2081,8 @@ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rt_study.cxx +[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rt_study_p.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx: In function 'void add_cms_structure(Rtss*, const Xio_studyset&, const char*, float)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx:111:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 111 | fgets (buf, 1024, fp); @@ -2063,8 +2108,6 @@ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx:175:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 175 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ -[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda 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-I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_series.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_series.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o @@ -2106,37 +2149,37 @@ make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/build make[3]: Entering directory 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-I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -MF CMakeFiles/plmutil.dir/bspline_correspond.cxx.o.d -o CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/bspline_correspond.cxx -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o +[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o -MF CMakeFiles/plmutil.dir/dice_statistics.cxx.o.d -o CMakeFiles/plmutil.dir/dice_statistics.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/dice_statistics.cxx +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -MF CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o.d -o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/dicom_sro_save.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o -MF CMakeFiles/plmutil.dir/distance_map.cxx.o.d -o CMakeFiles/plmutil.dir/distance_map.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/distance_map.cxx -[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o -MF CMakeFiles/plmutil.dir/diff.cxx.o.d -o CMakeFiles/plmutil.dir/diff.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/diff.cxx -[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o -MF CMakeFiles/plmutil.dir/distance_map.cxx.o.d -o CMakeFiles/plmutil.dir/distance_map.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/distance_map.cxx +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o -MF CMakeFiles/plmutil.dir/dvh.cxx.o.d -o CMakeFiles/plmutil.dir/dvh.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/dvh.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -MF CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o.d -o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/gamma_dose_comparison.cxx +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -MF CMakeFiles/plmutil.dir/geometry_chooser.cxx.o.d -o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/geometry_chooser.cxx +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -MF CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o.d -o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/gamma_dose_comparison.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -MF CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o.d -o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/hausdorff_distance.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o -MF CMakeFiles/plmutil.dir/image_boundary.cxx.o.d -o CMakeFiles/plmutil.dir/image_boundary.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/image_boundary.cxx +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o -MF CMakeFiles/plmutil.dir/image_center.cxx.o.d -o CMakeFiles/plmutil.dir/image_center.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/image_center.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o -MF CMakeFiles/plmutil.dir/image_boundary.cxx.o.d -o CMakeFiles/plmutil.dir/image_boundary.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/image_boundary.cxx +[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o -MF CMakeFiles/plmutil.dir/itk_adjust.cxx.o.d -o CMakeFiles/plmutil.dir/itk_adjust.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_adjust.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o -MF CMakeFiles/plmutil.dir/itk_crop.cxx.o.d -o CMakeFiles/plmutil.dir/itk_crop.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_crop.cxx -[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -MF CMakeFiles/plmutil.dir/itk_distance_map.cxx.o.d -o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_distance_map.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o -MF CMakeFiles/plmutil.dir/itk_gabor.cxx.o.d -o CMakeFiles/plmutil.dir/itk_gabor.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_gabor.cxx +[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o -MF CMakeFiles/plmutil.dir/itk_gabor.cxx.o.d -o CMakeFiles/plmutil.dir/itk_gabor.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_gabor.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -MF CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o.d -o CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_histogram_matching.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_intersect.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_intersect.cxx.o -MF CMakeFiles/plmutil.dir/itk_intersect.cxx.o.d -o CMakeFiles/plmutil.dir/itk_intersect.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_intersect.cxx @@ -2147,8 +2190,8 @@ [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o -MF CMakeFiles/plmutil.dir/itk_scale.cxx.o.d -o CMakeFiles/plmutil.dir/itk_scale.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_scale.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o -[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o -MF CMakeFiles/plmutil.dir/itk_threshold.cxx.o.d -o CMakeFiles/plmutil.dir/itk_threshold.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_threshold.cxx +[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o -MF CMakeFiles/plmutil.dir/itk_union.cxx.o.d -o CMakeFiles/plmutil.dir/itk_union.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_union.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o -MF CMakeFiles/plmutil.dir/landmark_diff.cxx.o.d -o CMakeFiles/plmutil.dir/landmark_diff.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/landmark_diff.cxx @@ -2205,60 +2248,60 @@ [ 51%] Built target plmutil make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/depend make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/depend +make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build +make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 51%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o [ 51%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o +[ 51%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o -MF CMakeFiles/plmregister.dir/bspline.cxx.o.d -o CMakeFiles/plmregister.dir/bspline.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline.cxx -[ 51%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -MF CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o.d -o CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/bowtie_correction.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -MF CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_landmarks.cxx -[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -[ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o -[ 53%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o -[ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o -[ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_options.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/drr_options.cxx +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o +[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o -MF CMakeFiles/plmdose.dir/beam_calc.cxx.o.d -o CMakeFiles/plmdose.dir/beam_calc.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_calc.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -MF CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_landmarks.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -MF CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o.d -o CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/bowtie_correction.cxx +[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o -MF CMakeFiles/plmregister.dir/bspline_gm.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_gm.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_gm.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o -MF CMakeFiles/plmregister.dir/bspline_mse.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_mse.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_mse.cxx -[ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o +[ 53%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o -MF CMakeFiles/plmdose.dir/beam_map.cxx.o.d -o CMakeFiles/plmdose.dir/beam_map.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_map.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/drr.cxx -[ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o -[ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o +[ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o -MF CMakeFiles/plmregister.dir/bspline_mi.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_mi.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_mi.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/drr_trilin.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o -MF CMakeFiles/plmdose.dir/beam_map.cxx.o.d -o CMakeFiles/plmdose.dir/beam_map.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_map.cxx -[ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o -[ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/fdk.cxx +[ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o -MF CMakeFiles/plmdose.dir/bragg_curve.cxx.o.d -o CMakeFiles/plmdose.dir/bragg_curve.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/bragg_curve.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o -MF CMakeFiles/plmdose.dir/compute_dose.cxx.o.d -o CMakeFiles/plmdose.dir/compute_dose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/compute_dose.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_options.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/drr_options.cxx [ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -MF CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o.d -o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/dose_volume_functions.cxx +[ 55%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o -MF CMakeFiles/plmregister.dir/bspline_mse.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_mse.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_mse.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o -MF CMakeFiles/plmdose.dir/compute_dose.cxx.o.d -o CMakeFiles/plmdose.dir/compute_dose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/compute_dose.cxx [ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o +[ 55%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/drr_trilin.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -MF CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o.d -o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/dose_volume_functions.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/fdk.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o -MF CMakeFiles/plmdose.dir/particle_type.cxx.o.d -o CMakeFiles/plmdose.dir/particle_type.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/particle_type.cxx [ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -MF CMakeFiles/plmdose.dir/rt_beam_model.cxx.o.d -o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_beam_model.cxx -[ 55%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/fdk_util.cxx [ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -MF CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o.d -o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx +[ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o -MF CMakeFiles/plmdose.dir/rt_dij.cxx.o.d -o CMakeFiles/plmdose.dir/rt_dij.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_dij.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx: In member function 'bool Rt_depth_dose::load(const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:64:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 64 | fgets (linebuf, 128, fp); @@ -2279,24 +2322,20 @@ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:125:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 125 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ -[ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o -MF CMakeFiles/plmdose.dir/rt_dij.cxx.o.d -o CMakeFiles/plmdose.dir/rt_dij.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_dij.cxx +[ 56%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/fdk_util.cxx [ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o -MF CMakeFiles/plmdose.dir/rt_lut.cxx.o.d -o CMakeFiles/plmdose.dir/rt_lut.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_lut.cxx [ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -MF CMakeFiles/plmdose.dir/rt_spot_map.cxx.o.d -o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_spot_map.cxx [ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize.cxx -[ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_lbfgsb.cxx [ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o -MF CMakeFiles/plmdose.dir/rt_mebs.cxx.o.d -o CMakeFiles/plmdose.dir/rt_mebs.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx [ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o -MF CMakeFiles/plmdose.dir/rt_parms.cxx.o.d -o CMakeFiles/plmdose.dir/rt_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_parms.cxx -[ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o -MF CMakeFiles/plmdose.dir/plan_calc.cxx.o.d -o CMakeFiles/plmdose.dir/plan_calc.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx -[ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o -MF CMakeFiles/plmdose.dir/rt_sigma.cxx.o.d -o CMakeFiles/plmdose.dir/rt_sigma.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_sigma.cxx +[ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_lbfgsb.cxx [ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_liblbfgs.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_calc.cxx: In member function 'bool Beam_calc::load(const char*)': @@ -2305,19 +2344,14 @@ | ~~~~~~^~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_nlopt.cxx -[ 59%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o -MF CMakeFiles/plmdose.dir/wed_parms.cxx.o.d -o CMakeFiles/plmdose.dir/wed_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx -[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o +[ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_steepest.cxx -[ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o +[ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o -MF CMakeFiles/plmdose.dir/plan_calc.cxx.o.d -o CMakeFiles/plmdose.dir/plan_calc.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx +[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o -MF CMakeFiles/plmregister.dir/bspline_parms.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_parms.cxx -[ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o +[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o -MF CMakeFiles/plmregister.dir/bspline_score.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_score.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_score.cxx -[ 61%] Linking CXX shared library ../../../libplmreconstruct.so -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmreconstruct.so.1.9 -o ../../../libplmreconstruct.so.1.9 CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o CMakeFiles/plmreconstruct.dir/drr.cxx.o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o CMakeFiles/plmreconstruct.dir/fdk.cxx.o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lpthread -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lfftw3f -lfftw3 ../../../libdevillard.a -[ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o -MF CMakeFiles/plmregister.dir/bspline_stage.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_stage.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_stage.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_dij.cxx: In member function 'void Rt_dij::dump(const std::string&) const': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_dij.cxx:51:28: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long unsigned int' [-Wformat=] 51 | fprintf (fp, "%d %f\n", c->index, c->dose); @@ -2325,28 +2359,21 @@ | | | | int long unsigned int | %ld -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx: In member function 'int Wed_parms::set_key_val(const char*, const char*, int)': -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx:237:32: warning: format '%i' expects argument of type 'int*', but argument 3 has type 'plm_long*' {aka 'long int*'} [-Wformat=] - 237 | if (sscanf (val, "%i %i", - | ~^ - | | - | int* - | %li - 238 | &(this->ires[0]), - | ~~~~~~~~~~~~~~~~ - | | - | plm_long* {aka long int*} -/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx:237:35: warning: format '%i' expects argument of type 'int*', but argument 4 has type 'plm_long*' {aka 'long int*'} [-Wformat=] - 237 | if (sscanf (val, "%i %i", - | ~^ - | | - | int* - | %li - 238 | &(this->ires[0]), - 239 | &(this->ires[1])) != 2) - | ~~~~~~~~~~~~~~~~ - | | - | plm_long* {aka long int*} +[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o -MF CMakeFiles/plmregister.dir/bspline_stage.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_stage.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_stage.cxx +[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o -MF CMakeFiles/plmregister.dir/bspline_state.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_state.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_state.cxx +[ 60%] Linking CXX shared library ../../../libplmreconstruct.so +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmreconstruct.so.1.9 -o ../../../libplmreconstruct.so.1.9 CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o CMakeFiles/plmreconstruct.dir/drr.cxx.o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o CMakeFiles/plmreconstruct.dir/fdk.cxx.o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lpthread -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lfftw3f -lfftw3 ../../../libdevillard.a +[ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize.cxx +[ 61%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o -MF CMakeFiles/plmdose.dir/rt_sigma.cxx.o.d -o CMakeFiles/plmdose.dir/rt_sigma.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_sigma.cxx +[ 62%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o -MF CMakeFiles/plmdose.dir/wed_parms.cxx.o.d -o CMakeFiles/plmdose.dir/wed_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx +[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_analytic.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function 'void Rt_mebs::load_beamlet_map(Aperture::Pointer&)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1129:52: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 1129 | printf("beamlet line number expected: %d, beamlet line detected: %d.\n", ap->get_dim(1), line_number); @@ -2373,6 +2400,8 @@ | | | | int plm_long {aka long int} | %ld +[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_numeric.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function 'void Rt_mebs::export_as_txt(const std::string&, Aperture::Pointer)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1385:18: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 1385 | printf ("Ap %d %d\n", ap->get_dim(0), ap->get_dim(1)); @@ -2386,25 +2415,39 @@ | | | | int plm_long {aka long int} | %ld -[ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o -MF CMakeFiles/plmregister.dir/bspline_state.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_state.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_state.cxx -[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize.cxx -[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_analytic.cxx -[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_numeric.cxx [ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_semi_analytic.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_symlink_library ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o -MF CMakeFiles/plmregister.dir/demons.cxx.o.d -o CMakeFiles/plmregister.dir/demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/demons.cxx +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx: In member function 'int Wed_parms::set_key_val(const char*, const char*, int)': +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx:237:32: warning: format '%i' expects argument of type 'int*', but argument 3 has type 'plm_long*' {aka 'long int*'} [-Wformat=] + 237 | if (sscanf (val, "%i %i", + | ~^ + | | + | int* + | %li + 238 | &(this->ires[0]), + | ~~~~~~~~~~~~~~~~ + | | + | plm_long* {aka long int*} +/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx:237:35: warning: format '%i' expects argument of type 'int*', but argument 4 has type 'plm_long*' {aka 'long int*'} [-Wformat=] + 237 | if (sscanf (val, "%i %i", + | ~^ + | | + | int* + | %li + 238 | &(this->ires[0]), + 239 | &(this->ires[1])) != 2) + | ~~~~~~~~~~~~~~~~ + | | + | plm_long* {aka long int*} +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_symlink_library ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o -MF CMakeFiles/plmregister.dir/demons_cpu.cxx.o.d -o CMakeFiles/plmregister.dir/demons_cpu.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/demons_cpu.cxx -[ 63%] Built target plmreconstruct [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o -MF CMakeFiles/plmregister.dir/demons_state.cxx.o.d -o CMakeFiles/plmregister.dir/demons_state.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/demons_state.cxx +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 63%] Built target plmreconstruct [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -MF CMakeFiles/plmregister.dir/gpuit_demons.cxx.o.d -o CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/gpuit_demons.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o @@ -2415,6 +2458,12 @@ cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o -MF CMakeFiles/plmregister.dir/itk_align_center.cxx.o.d -o CMakeFiles/plmregister.dir/itk_align_center.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_align_center.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons.cxx +[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons_util.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_util.cxx +[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_diff_demons.cxx +[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx: In member function 'void Plan_calc::normalize_beam_dose(Beam_calc*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx:424:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 424 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); @@ -2452,6 +2501,10 @@ | | | | int plm_long {aka long int} | %ld +[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_log_demons.cxx +[ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx: In member function 'void Plan_calc::print_verif()': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx:759:73: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 759 | printf("\n i_res: "); for (int i = 0; i < num_beams; i++) {printf("%d %d ** ", d_ptr->beam_storage[i]->get_aperture()->get_dim()[0], d_ptr->beam_storage[i]->get_aperture()->get_dim()[1]);} @@ -2465,16 +2518,6 @@ | | | | int long int | %ld -[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons_util.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_util.cxx -[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_diff_demons.cxx -[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx -[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_log_demons.cxx -[ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -MF CMakeFiles/plmregister.dir/itk_optimizer.cxx.o.d -o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_optimizer.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o @@ -2485,20 +2528,28 @@ cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o -MF CMakeFiles/plmregister.dir/itk_tps.cxx.o.d -o CMakeFiles/plmregister.dir/itk_tps.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_tps.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o -MF CMakeFiles/plmregister.dir/joint_histogram.cxx.o.d -o CMakeFiles/plmregister.dir/joint_histogram.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/joint_histogram.cxx -[ 67%] Linking CXX shared library ../../../libplmdose.so -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmdose.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmdose.so.1.9 -o ../../../libplmdose.so.1.9 CMakeFiles/plmdose.dir/beam_calc.cxx.o CMakeFiles/plmdose.dir/beam_map.cxx.o CMakeFiles/plmdose.dir/bragg_curve.cxx.o CMakeFiles/plmdose.dir/compute_dose.cxx.o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o CMakeFiles/plmdose.dir/particle_type.cxx.o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o CMakeFiles/plmdose.dir/rt_dij.cxx.o CMakeFiles/plmdose.dir/rt_lut.cxx.o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o CMakeFiles/plmdose.dir/rt_mebs.cxx.o CMakeFiles/plmdose.dir/rt_parms.cxx.o CMakeFiles/plmdose.dir/plan_calc.cxx.o CMakeFiles/plmdose.dir/rt_sigma.cxx.o CMakeFiles/plmdose.dir/wed_parms.cxx.o -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libspecfun.a ../../../libplmbase.so.1.9 /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lpthread -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lfftw3f -lfftw3 ../../../libdevillard.a [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o -MF CMakeFiles/plmregister.dir/landmark_warp.cxx.o.d -o CMakeFiles/plmregister.dir/landmark_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/landmark_warp.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmdose.so [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o -MF CMakeFiles/plmregister.dir/metric_parms.cxx.o.d -o CMakeFiles/plmregister.dir/metric_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/metric_parms.cxx -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 68%] Built target plmdose +[ 68%] Linking CXX shared library ../../../libplmdose.so +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmdose.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmdose.so.1.9 -o ../../../libplmdose.so.1.9 CMakeFiles/plmdose.dir/beam_calc.cxx.o CMakeFiles/plmdose.dir/beam_map.cxx.o CMakeFiles/plmdose.dir/bragg_curve.cxx.o CMakeFiles/plmdose.dir/compute_dose.cxx.o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o CMakeFiles/plmdose.dir/particle_type.cxx.o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o CMakeFiles/plmdose.dir/rt_dij.cxx.o CMakeFiles/plmdose.dir/rt_lut.cxx.o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o CMakeFiles/plmdose.dir/rt_mebs.cxx.o CMakeFiles/plmdose.dir/rt_parms.cxx.o CMakeFiles/plmdose.dir/plan_calc.cxx.o CMakeFiles/plmdose.dir/rt_sigma.cxx.o CMakeFiles/plmdose.dir/wed_parms.cxx.o -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libspecfun.a ../../../libplmbase.so.1.9 /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lpthread -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lfftw3f -lfftw3 ../../../libdevillard.a [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o -MF CMakeFiles/plmregister.dir/metric_state.cxx.o.d -o CMakeFiles/plmregister.dir/metric_state.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/metric_state.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o -MF CMakeFiles/plmregister.dir/process_parms.cxx.o.d -o CMakeFiles/plmregister.dir/process_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/process_parms.cxx +[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -MF CMakeFiles/plmregister.dir/rbf_cluster.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_cluster.cxx +[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -MF CMakeFiles/plmregister.dir/rbf_gauss.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_gauss.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmdose.so +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 69%] Built target plmdose +[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -MF CMakeFiles/plmregister.dir/rbf_wendland.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_wendland.cxx +[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o -MF CMakeFiles/plmregister.dir/registration.cxx.o.d -o CMakeFiles/plmregister.dir/registration.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx In file included from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons/itkLogDomainDemonsRegistrationFilterWithMaskExtension.h:5, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:14, @@ -2525,6 +2576,8 @@ /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ +[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o -MF CMakeFiles/plmregister.dir/registration_data.cxx.o.d -o CMakeFiles/plmregister.dir/registration_data.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_data.cxx In file included from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons/itkDiffeomorphicDemonsRegistrationWithMaskFilter.h:22, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_diff_demons.h:7, @@ -2554,21 +2607,23 @@ /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ -[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -MF CMakeFiles/plmregister.dir/rbf_cluster.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_cluster.cxx -[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -MF CMakeFiles/plmregister.dir/rbf_gauss.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_gauss.cxx In file included from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, - from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces/itkFastSymmetricForcesDemonsRegistrationWithMaskFilter.h:22, - from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.h:7, - from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx:12: + from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons/itkLogDomainDemonsRegistrationFilterWithMaskExtension.h:5, + from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:14, + from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_sym_log_demons.h:8, + from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx:6: /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx: In instantiation of 'itk::ESMDemonsRegistrationWithMaskFunction::PixelType itk::ESMDemonsRegistrationWithMaskFunction::ComputeUpdate(const NeighborhoodType&, void*, const FloatOffsetType&) [with TFixedImage = itk::Image; TMovingImage = itk::Image; TDeformationField = itk::Image, 3>; PixelType = itk::Vector; NeighborhoodType = itk::ConstNeighborhoodIterator, 3>, itk::ZeroFluxNeumannBoundaryCondition, 3>, itk::Image, 3> > >; FloatOffsetType = itk::Vector]': /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:228:1: required from here /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:279:51: warning: 'bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]' is deprecated [-Wdeprecated-declarations] 279 | if ( !this->GetMovingImageMask()->IsInside(mappedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/ITK-5.2/itkArray.h:21, - from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx:8: +In file included from /usr/include/ITK-5.2/itkLightObject.h:21, + from /usr/include/ITK-5.2/itkObject.h:31, + from /usr/include/ITK-5.2/itkRegion.h:31, + from /usr/include/ITK-5.2/itkImageRegion.h:31, + from /usr/include/ITK-5.2/itkImage.h:21, + from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_type.h:14, + from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:8: /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ @@ -2579,22 +2634,16 @@ 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ In file included from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, - from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons/itkLogDomainDemonsRegistrationFilterWithMaskExtension.h:5, - from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:14, - from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_sym_log_demons.h:8, - from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx:6: + from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces/itkFastSymmetricForcesDemonsRegistrationWithMaskFilter.h:22, + from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.h:7, + from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx:12: /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx: In instantiation of 'itk::ESMDemonsRegistrationWithMaskFunction::PixelType itk::ESMDemonsRegistrationWithMaskFunction::ComputeUpdate(const NeighborhoodType&, void*, const FloatOffsetType&) [with TFixedImage = itk::Image; TMovingImage = itk::Image; TDeformationField = itk::Image, 3>; PixelType = itk::Vector; NeighborhoodType = itk::ConstNeighborhoodIterator, 3>, itk::ZeroFluxNeumannBoundaryCondition, 3>, itk::Image, 3> > >; FloatOffsetType = itk::Vector]': /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:228:1: required from here /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:279:51: warning: 'bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]' is deprecated [-Wdeprecated-declarations] 279 | if ( !this->GetMovingImageMask()->IsInside(mappedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/ITK-5.2/itkLightObject.h:21, - from /usr/include/ITK-5.2/itkObject.h:31, - from /usr/include/ITK-5.2/itkRegion.h:31, - from /usr/include/ITK-5.2/itkImageRegion.h:31, - from /usr/include/ITK-5.2/itkImage.h:21, - from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_type.h:14, - from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:8: +In file included from /usr/include/ITK-5.2/itkArray.h:21, + from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx:8: /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ @@ -2604,12 +2653,6 @@ /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ -[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -MF CMakeFiles/plmregister.dir/rbf_wendland.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_wendland.cxx -[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o -MF CMakeFiles/plmregister.dir/registration.cxx.o.d -o CMakeFiles/plmregister.dir/registration.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx -[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o -MF CMakeFiles/plmregister.dir/registration_data.cxx.o.d -o CMakeFiles/plmregister.dir/registration_data.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_data.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o -MF CMakeFiles/plmregister.dir/registration_parms.cxx.o.d -o CMakeFiles/plmregister.dir/registration_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_parms.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o @@ -2618,12 +2661,6 @@ cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o -MF CMakeFiles/plmregister.dir/registration_util.cxx.o.d -o CMakeFiles/plmregister.dir/registration_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_util.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o -MF CMakeFiles/plmregister.dir/shared_parms.cxx.o.d -o CMakeFiles/plmregister.dir/shared_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/shared_parms.cxx -[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -MF CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o.d -o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/similarity_metric_type.cxx -[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o -MF CMakeFiles/plmregister.dir/stage_parms.cxx.o.d -o CMakeFiles/plmregister.dir/stage_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/stage_parms.cxx -[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -MF CMakeFiles/plmregister.dir/translation_grid_search.cxx.o.d -o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/translation_grid_search.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx: In function 'void* registration_main_thread(void*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:597:51: warning: 'ThreadInfoStruct' is deprecated: Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0 [-Wdeprecated-declarations] 597 | itk::PlatformMultiThreader::ThreadInfoStruct *info @@ -2655,6 +2692,12 @@ /usr/include/ITK-5.2/itkPlatformMultiThreader.h:137:3: note: declared here 137 | itkLegacyMacro(ThreadIdType SpawnThread(ThreadFunctionType, void * data)); | ^~~~~~~~~~~~~~ +[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -MF CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o.d -o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/similarity_metric_type.cxx +[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o -MF CMakeFiles/plmregister.dir/stage_parms.cxx.o.d -o CMakeFiles/plmregister.dir/stage_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/stage_parms.cxx +[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -MF CMakeFiles/plmregister.dir/translation_grid_search.cxx.o.d -o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/translation_grid_search.cxx [ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o -MF CMakeFiles/plmregister.dir/translation_mi.cxx.o.d -o CMakeFiles/plmregister.dir/translation_mi.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/translation_mi.cxx [ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mse.cxx.o @@ -2671,35 +2714,35 @@ make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o +[ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o +[ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel.cxx -[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_feature.cxx [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_parms.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_task.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_task.cxx -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o +[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_thumbnailer.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_trainer.cxx -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o +[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_trainer.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -MF CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o.d -o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/dlib_trainer.cxx +[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o +[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o -MF CMakeFiles/plmsegment.dir/mabs.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_atlas_selection.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_parms.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_parms.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_seg_weights.cxx +[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_stats.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_stats.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_staple.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_staple.cxx +[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_vote.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_vote.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o -MF CMakeFiles/plmsegment.dir/ml_convert.cxx.o.d -o CMakeFiles/plmsegment.dir/ml_convert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/ml_convert.cxx @@ -2751,34 +2794,34 @@ make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend -make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend +make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend -make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend -make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color= +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake --color= @@ -2786,172 +2829,172 @@ make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build -make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build -make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build -make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build -[ 77%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o -[ 78%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o -MF CMakeFiles/dicom_info.dir/dicom_info.cxx.o.d -o CMakeFiles/dicom_info.dir/dicom_info.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/dicom_info.cxx make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_add.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_add.cxx +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build -[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o -[ 78%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o -MF CMakeFiles/compute_distance.dir/compute_distance.cxx.o.d -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/compute_distance.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_adjust.cxx +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o +make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o -MF CMakeFiles/compute_distance.dir/compute_distance.cxx.o.d -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/compute_distance.cxx make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -MF 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-I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o -MF CMakeFiles/compute_distance.dir/closest_point.cxx.o.d -o CMakeFiles/compute_distance.dir/closest_point.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/closest_point.cxx make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -MF CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o.d -o CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/merge_vector_fields.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -MF CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o.d -o CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/landmark_diff_main.cxx -[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o +[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build +[ 79%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o -MF CMakeFiles/compute_distance.dir/read_obj.cxx.o.d -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/read_obj.cxx +[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_adjust.cxx make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -MF CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o.d -o CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/shuffle_mha_main.cxx -[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o -MF CMakeFiles/dicom_info.dir/dicom_info.cxx.o.d -o CMakeFiles/dicom_info.dir/dicom_info.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/dicom_info.cxx make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o +[ 79%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -MF CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o.d -o CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/landmark_diff_main.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -MF CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o.d -o CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/shuffle_mha_main.cxx +[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_add.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_add.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o -MF CMakeFiles/wed.dir/wed_main.cxx.o.d -o CMakeFiles/wed.dir/wed_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/wed_main.cxx -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -MF CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o.d -o CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/xvi_archive.cxx +[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o -MF CMakeFiles/check_grad.dir/check_grad.cxx.o.d -o CMakeFiles/check_grad.dir/check_grad.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/check_grad.cxx +[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -MF CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o.d -o CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/merge_vector_fields.cxx +[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/bragg_curve_main.cxx +[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o +[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -MF CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o.d -o CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/xvi_archive.cxx +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -MF CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o.d -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/hnd_to_pfm.cxx +[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o -MF CMakeFiles/demons.dir/demons_main.cxx.o.d -o CMakeFiles/demons.dir/demons_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/demons_main.cxx -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o +[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o -MF CMakeFiles/dlib_train.dir/dlib_train.cxx.o.d -o CMakeFiles/dlib_train.dir/dlib_train.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/dlib_train.cxx -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -MF CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o.d -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/hnd_to_pfm.cxx -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/bragg_curve_main.cxx -[ 81%] Linking CXX executable ../../../landmark_diff +[ 82%] Linking CXX executable ../../../landmark_diff cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/landmark_diff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -o ../../../landmark_diff -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/bragg_curve_opts.cxx -[ 81%] Linking CXX executable ../../../hnd_to_pfm +[ 82%] Linking CXX executable ../../../hnd_to_pfm cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/hnd_to_pfm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -o ../../../hnd_to_pfm -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 81%] Linking CXX executable ../../../bragg_curve +[ 82%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/bragg_curve_opts.cxx +[ 82%] Linking CXX executable ../../../bragg_curve cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/bragg_curve.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -o ../../../bragg_curve -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 81%] Built target hnd_to_pfm +[ 82%] Built target hnd_to_pfm make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend -[ 81%] Built target landmark_diff -make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend +[ 82%] Built target bragg_curve make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build +make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 81%] Built target bragg_curve -[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -MF CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o.d -o CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/dicom_uid_main.cxx -[ 82%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o +[ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o -MF CMakeFiles/sobp.dir/sobp_main.cxx.o.d -o CMakeFiles/sobp.dir/sobp_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/sobp_main.cxx -[ 82%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_autolabel.cxx -[ 82%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o +[ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -MF CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o.d -o CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/dicom_uid_main.cxx +[ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o -MF CMakeFiles/demons.dir/demons_opts.cxx.o.d -o CMakeFiles/demons.dir/demons_opts.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/demons_opts.cxx -[ 83%] Linking CXX executable ../../../demons +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 83%] Built target landmark_diff +[ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_autolabel_train.cxx +[ 84%] Linking CXX executable ../../../demons cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/demons.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/demons.dir/demons_main.cxx.o CMakeFiles/demons.dir/demons_opts.cxx.o -o ../../../demons -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 83%] Linking CXX executable ../../../wed +[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_autolabel.cxx +[ 84%] Linking CXX executable ../../../wed cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/wed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/wed.dir/wed_main.cxx.o -o ../../../wed -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 83%] Built target demons -[ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o +[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_bbox.cxx make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 83%] Built target wed -[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o +[ 84%] Built target demons +[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_benchmark.cxx -[ 84%] Linking CXX executable ../../../dicom_uid -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_uid.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -o ../../../dicom_uid -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 84%] Linking CXX executable ../../../shuffle_mha +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 85%] Linking CXX executable ../../../shuffle_mha cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/shuffle_mha.dir/link.txt --verbose=1 +[ 85%] Built target wed /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -o ../../../shuffle_mha -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 84%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o -MF CMakeFiles/compute_distance.dir/closest_point.cxx.o.d -o CMakeFiles/compute_distance.dir/closest_point.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/closest_point.cxx -[ 84%] Linking CXX executable ../../../sobp +[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_boundary.cxx +[ 85%] Linking CXX executable ../../../dicom_uid +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_uid.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -o ../../../dicom_uid -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +[ 85%] Linking CXX executable ../../../sobp cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/sobp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/sobp.dir/sobp_main.cxx.o -o ../../../sobp -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +[ 85%] Linking CXX executable ../../../compute_distance +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/compute_distance.dir/compute_distance.cxx.o CMakeFiles/compute_distance.dir/closest_point.cxx.o CMakeFiles/compute_distance.dir/read_obj.cxx.o -o ../../../compute_distance -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 84%] Built target sobp -[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_boundary.cxx -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 84%] Built target dicom_uid -[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o +[ 85%] Built target shuffle_mha +[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_compare.cxx make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 84%] Built target shuffle_mha -[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o +[ 85%] Built target sobp +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_compose.cxx -[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o +[ 85%] Built target dicom_uid +[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_crop.cxx -[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 86%] Built target compute_distance +[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_dice.cxx -[ 86%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o -MF CMakeFiles/compute_distance.dir/read_obj.cxx.o.d -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/read_obj.cxx -[ 86%] Linking CXX executable ../../../check_grad -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/check_grad.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/check_grad.dir/check_grad.cxx.o -o ../../../check_grad -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 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/usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 [ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_diff.cxx [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_dmap.cxx -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 87%] Built target check_grad +[ 87%] Linking CXX executable ../../../check_grad +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/check_grad.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/check_grad.dir/check_grad.cxx.o -o ../../../check_grad -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_dose.cxx -[ 87%] Linking CXX executable ../../../compute_distance -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/compute_distance.dir/compute_distance.cxx.o CMakeFiles/compute_distance.dir/closest_point.cxx.o CMakeFiles/compute_distance.dir/read_obj.cxx.o -o ../../../compute_distance -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 87%] Built target compute_distance +[ 87%] Built target check_grad [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_drr.cxx [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o @@ -2960,41 +3003,41 @@ cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_fdk.cxx [ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_filter.cxx -[ 89%] Linking CXX executable ../../../dicom_info -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 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/usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o +[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_gamma.cxx -[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o +[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_header.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_header.cxx -[ 90%] Linking CXX executable ../../../xvi_archive -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/xvi_archive.dir/link.txt --verbose=1 -[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o +[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_intersect.cxx -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -o ../../../xvi_archive -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../libinih.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +[ 90%] Linking CXX executable ../../../dicom_info +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_jacobian.cxx +[ 91%] Linking CXX executable ../../../merge_vfs +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/merge_vfs.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -o ../../../merge_vfs -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 91%] Built target dicom_info -[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_jacobian.cxx [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_lm_warp.cxx make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 91%] Built target xvi_archive +[ 91%] Built target merge_vfs [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_mabs.cxx -[ 92%] Linking CXX executable ../../../merge_vfs -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/merge_vfs.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -o ../../../merge_vfs -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +[ 92%] Linking CXX executable ../../../xvi_archive +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/xvi_archive.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -o ../../../xvi_archive -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../libinih.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_mask.cxx -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 93%] Built target merge_vfs [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_maximum.cxx [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_ml_convert.cxx [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_multiply.cxx +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 93%] Built target xvi_archive [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_probe.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o @@ -3027,8 +3070,16 @@ cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_warp_pointset.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_wed.cxx +[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xf_convert.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx +[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xf_invert.cxx +[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -MF CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o.d -o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/plastimatch_main.cxx +[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -MF CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o.d -o CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/plastimatch_startup.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx: In function 'void do_command_xio_dvh(int, char**)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:46:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets(buf, 200, fp); //XiO Dose Volume Histogram @@ -3071,34 +3122,26 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xf_convert.cxx -[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xf_invert.cxx -[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -MF CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o.d -o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/plastimatch_main.cxx -[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -MF CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o.d -o CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/plastimatch_startup.cxx -[ 99%] Linking CXX executable ../../../plastimatch -cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/cmake -E cmake_link_script 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../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../clp/libplmclp.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 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/usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 99%] Built target plastimatch [100%] Linking CXX executable ../../../dlib_train cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlib_train.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dlib_train.dir/dlib_train.cxx.o -o ../../../dlib_train -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [100%] Built target dlib_train +[100%] Linking CXX executable ../../../plastimatch +cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/plastimatch.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/plastimatch.dir/pcmd_add.cxx.o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o 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../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../clp/libplmclp.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[100%] Built target plastimatch make[2]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/plastimatch-1.9.4+dfsg.1' dh_auto_test - cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=--verbose ARGS\+=-j15 + cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=--verbose ARGS\+=-j16 make[2]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j15 +/usr/bin/ctest --force-new-ctest-process --verbose -j16 UpdateCTestConfiguration from :/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/DartConfiguration.tcl Add coverage exclude regular expressions. @@ -3293,6 +3336,12 @@ 17: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-double-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 17: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 17: Test timeout computed to be: 1500 +test 18 + Start 18: gauss-double-2 + +18: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-double-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +18: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +18: Test timeout computed to be: 1500 10: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 10: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10 10: EXPECTED_ERRNO is @@ -3338,542 +3387,531 @@ 17: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 17: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10 17: EXPECTED_ERRNO is -2: RETVAL: 0 -2: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd -2: -2: STDERR: -2: Not an error -1: RETVAL: 0 -1: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha -1: -1: STDERR: -1: Not an error -15: RETVAL: 0 -15: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha -15: -15: STDERR: -15: Not an error -3: RETVAL: 0 -3: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd -3: -3: STDERR: - 1/578 Test #1: black-1 ............................... Passed 0.78 sec -test 18 - Start 18: gauss-double-2 - -18: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-double-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -18: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -18: Test timeout computed to be: 1500 -3: Not an error -10: RETVAL: 0 -10: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -10: -10: STDERR: -10: Not an error -12: RETVAL: 0 -12: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha -12: -12: STDERR: -12: Not an error -14: RETVAL: 0 -14: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha -14: -14: STDERR: -14: Not an error -17: RETVAL: 0 -17: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha -17: -17: STDERR: -17: Not an error -5: RETVAL: 0 -5: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd -5: -5: STDERR: -5: Not an error +18: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +18: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10 +18: EXPECTED_ERRNO is 11: RETVAL: 0 11: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 11: 11: STDERR: 11: Not an error - 2/578 Test #10: gauss-1 ............................... Passed 0.87 sec + 1/578 Test #11: gauss-2 ............................... Passed 0.36 sec test 19 Start 19: gauss-ushort-1 19: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-ushort-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 19: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 19: Test timeout computed to be: 1500 - 3/578 Test #11: gauss-2 ............................... Passed 0.87 sec +19: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +19: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10 +19: EXPECTED_ERRNO is +3: RETVAL: 0 +3: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd +3: +3: STDERR: +3: Not an error + 2/578 Test #3: cyl-mask-2 ............................ Passed 0.36 sec test 20 Start 20: gauss-ushort-2 20: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-ushort-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 20: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 20: Test timeout computed to be: 1500 - 4/578 Test #12: gauss-3 ............................... Passed 0.88 sec +20: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +20: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10 +20: EXPECTED_ERRNO is +18: RETVAL: 0 +18: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha +18: +18: STDERR: +18: Not an error + 3/578 Test #18: gauss-double-2 ........................ Passed 0.32 sec test 21 Start 21: lung-1 21: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=lung-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--filenames-without-uids;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom;--pattern;lung;--lung-tumor-pos;0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 21: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 21: Test timeout computed to be: 1500 - 5/578 Test #14: gauss-5 ............................... Passed 0.89 sec +7: RETVAL: 0 +7: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha +7: Converting from ITK_UCHAR to ITK_UCHAR_VEC +7: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha +7: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-prefix//Foreground.mha +7: save_ss_img: save_ss_list +7: Done. +7: Doing extraction +7: Keyholizing structure 0. +7: Write: DoseGridScaling = 0.000000 +7: +7: STDERR: +7: Not an error +10: RETVAL: 0 +10: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +10: +10: STDERR: +10: Not an error + 4/578 Test #10: gauss-1 ............................... Passed 0.57 sec test 27 Start 27: ptv-1 27: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=ptv-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha;--pattern;rect;--dim;60 60 60;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;5 5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 27: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 27: Test timeout computed to be: 1500 - 6/578 Test #2: cyl-1 ................................. Passed 0.87 sec + 5/578 Test #7: donut-1 ............................... Passed 0.46 sec test 28 Start 28: ptv-2 28: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=ptv-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha;--pattern;rect;--dim;40 40 40;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-100 -100 -100;--spacing;5 5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 28: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 28: Test timeout computed to be: 1500 - 7/578 Test #3: cyl-mask-2 ............................ Passed 0.87 sec +2: RETVAL: 0 +2: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd +2: +2: STDERR: +2: Not an error + 6/578 Test #2: cyl-1 ................................. Passed 0.54 sec test 30 Start 30: rect-2 30: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha;--output-type;float;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-2;--filenames-without-uids" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 30: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 30: Test timeout computed to be: 1500 - 8/578 Test #5: cyl-mask-3 ............................ Passed 0.87 sec +21: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +21: PARMS is synth;--filenames-without-uids;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom;--pattern;lung;--lung-tumor-pos;0 +21: EXPECTED_ERRNO is +12: RETVAL: 0 +12: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha +12: +12: STDERR: +12: Not an error +14: RETVAL: 0 +14: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha +14: +14: STDERR: +14: Not an error + 7/578 Test #12: gauss-3 ............................... Passed 0.60 sec test 31 Start 31: rect-2s 31: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-2s" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--spacing;13.158 13.158 13.158;--rect-size; 200 200 200;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 31: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 31: Test timeout computed to be: 1500 - 9/578 Test #15: gauss-6 ............................... Passed 0.80 sec +1: RETVAL: 0 +1: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha +1: +1: STDERR: +27: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +27: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha;--pattern;rect;--dim;60 60 60;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;5 5 5 +27: EXPECTED_ERRNO is + 8/578 Test #14: gauss-5 ............................... Passed 0.60 sec test 32 Start 32: rect-3 32: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-3" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;float;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-3;--filenames-without-uids" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 32: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 32: Test timeout computed to be: 1500 - 10/578 Test #17: gauss-double-1 ........................ Passed 0.79 sec +1: Not an error +17: RETVAL: 0 +17: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha +17: +17: STDERR: +28: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +28: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha;--pattern;rect;--dim;40 40 40;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-100 -100 -100;--spacing;5 5 5 +28: EXPECTED_ERRNO is + 9/578 Test #1: black-1 ............................... Passed 0.59 sec test 33 Start 33: rect-4 33: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-4" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 33: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 33: Test timeout computed to be: 1500 -8: RETVAL: 0 -8: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha -8: -8: STDERR: -8: Not an error - 11/578 Test #8: donut-2 ............................... Passed 0.88 sec +17: Not an error +13: RETVAL: 0 +13: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha +13: +13: STDERR: +5: RETVAL: 0 +5: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd +5: +5: STDERR: +5: Not an error + 10/578 Test #5: cyl-mask-3 ............................ Passed 0.56 sec test 34 Start 34: rect-5 34: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-5" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;-300 -150 -250;--direction-cosines;rotated-1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 34: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 34: Test timeout computed to be: 1500 -18: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -18: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10 -18: EXPECTED_ERRNO is -9: RETVAL: 0 -9: STDOUT: Gabor: 0 1 -> (0.000000 -1.570796) -> (-0.000000 -0.000000 -1.000000) -9: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha -9: -9: STDERR: -9: Not an error - 12/578 Test #9: gabor-01 .............................. Passed 0.90 sec + 11/578 Test #17: gauss-double-1 ........................ Passed 0.46 sec test 40 Start 40: rect-10-roi-1 40: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10-roi-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-60 60 -60 60 -60 60" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 40: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 40: Test timeout computed to be: 1500 -19: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -19: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10 -19: EXPECTED_ERRNO is -20: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -20: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10 -20: EXPECTED_ERRNO is -21: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -21: PARMS is synth;--filenames-without-uids;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom;--pattern;lung;--lung-tumor-pos;0 -21: EXPECTED_ERRNO is -27: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -27: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha;--pattern;rect;--dim;60 60 60;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;5 5 5 -27: EXPECTED_ERRNO is -30: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -30: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha;--output-type;float;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-2;--filenames-without-uids -30: EXPECTED_ERRNO is -13: RETVAL: 0 -13: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha -13: -13: STDERR: 13: Not an error - 13/578 Test #13: gauss-4 ............................... Passed 0.90 sec + 12/578 Test #13: gauss-4 ............................... Passed 0.50 sec test 43 Start 43: rect-11-roi 43: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-11-roi" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 80 -50 80 -50 80" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 43: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 43: Test timeout computed to be: 1500 -28: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -28: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha;--pattern;rect;--dim;40 40 40;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-100 -100 -100;--spacing;5 5 5 -28: EXPECTED_ERRNO is -31: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -31: PARMS is synth;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--spacing;13.158 13.158 13.158;--rect-size; 200 200 200;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha -31: EXPECTED_ERRNO is -32: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -32: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;float;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-3;--filenames-without-uids -32: EXPECTED_ERRNO is -33: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -33: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50 -33: EXPECTED_ERRNO is +30: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +30: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha;--output-type;float;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-2;--filenames-without-uids +30: EXPECTED_ERRNO is +15: RETVAL: 0 +15: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha +15: +15: STDERR: +15: Not an error 34: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 34: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;-300 -150 -250;--direction-cosines;rotated-1 34: EXPECTED_ERRNO is -43: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -43: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 80 -50 80 -50 80 -43: EXPECTED_ERRNO is -40: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -40: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-60 60 -60 60 -60 60 -40: EXPECTED_ERRNO is -18: RETVAL: 0 -18: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha -18: -18: STDERR: -18: Not an error -28: RETVAL: 0 -28: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha -28: -28: STDERR: -28: Not an error - 14/578 Test #18: gauss-double-2 ........................ Passed 0.66 sec + 13/578 Test #15: gauss-6 ............................... Passed 0.51 sec test 44 Start 44: rect-12 44: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-12" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 44: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 44: Test timeout computed to be: 1500 - 15/578 Test #28: ptv-2 ................................. Passed 0.58 sec +9: RETVAL: 0 +9: STDOUT: Gabor: 0 1 -> (0.000000 -1.570796) -> (-0.000000 -0.000000 -1.000000) +9: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha +9: +9: STDERR: +9: Not an error +32: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +32: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;float;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-3;--filenames-without-uids +32: EXPECTED_ERRNO is +31: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +31: PARMS is synth;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--spacing;13.158 13.158 13.158;--rect-size; 200 200 200;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha +31: EXPECTED_ERRNO is +33: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +33: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50 +33: EXPECTED_ERRNO is +8: RETVAL: 0 +8: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha +8: +8: STDERR: + 14/578 Test #9: gabor-01 .............................. Passed 0.57 sec test 45 Start 45: rect-13 45: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-13" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;11;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 45: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 45: Test timeout computed to be: 1500 -33: RETVAL: 0 -33: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha -33: -33: STDERR: -33: Not an error -44: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -44: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5 -44: EXPECTED_ERRNO is - 16/578 Test #33: rect-4 ................................ Passed 0.56 sec +40: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +40: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-60 60 -60 60 -60 60 +40: EXPECTED_ERRNO is +43: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +43: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 80 -50 80 -50 80 +43: EXPECTED_ERRNO is +8: Not an error + 15/578 Test #8: donut-2 ............................... Passed 0.61 sec test 46 Start 46: rect-14 46: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-14" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-2.5 6.5 -4.5 4.5 -4.5 4.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 46: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 46: Test timeout computed to be: 1500 -40: RETVAL: 0 -40: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha -40: -40: STDERR: -40: Not an error 45: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 45: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;11;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5 45: EXPECTED_ERRNO is - 17/578 Test #40: rect-10-roi-1 ......................... Passed 0.54 sec +19: RETVAL: 0 +19: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha +19: +19: STDERR: +44: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +44: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5 +44: EXPECTED_ERRNO is +46: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +46: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-2.5 6.5 -4.5 4.5 -4.5 4.5 +46: EXPECTED_ERRNO is +20: RETVAL: 0 +20: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha +20: +20: STDERR: +19: Not an error + 16/578 Test #19: gauss-ushort-1 ........................ Passed 0.48 sec test 47 Start 47: rect-15 47: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-15" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 47: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 47: Test timeout computed to be: 1500 -47: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -47: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1 -47: EXPECTED_ERRNO is -46: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -46: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-2.5 6.5 -4.5 4.5 -4.5 4.5 -46: EXPECTED_ERRNO is -19: RETVAL: 0 -19: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha -19: -19: STDERR: -19: Not an error - 18/578 Test #19: gauss-ushort-1 ........................ Passed 0.82 sec +20: Not an error + 17/578 Test #20: gauss-ushort-2 ........................ Passed 0.44 sec test 48 Start 48: rect-16 48: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-16" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 48: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 48: Test timeout computed to be: 1500 -20: RETVAL: 0 -20: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha -20: -20: STDERR: -20: Not an error - 19/578 Test #20: gauss-ushort-2 ........................ Passed 0.82 sec +47: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +47: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1 +47: EXPECTED_ERRNO is +48: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +48: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1 +48: EXPECTED_ERRNO is +33: RETVAL: 0 +33: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha +33: +33: STDERR: +33: Not an error + 18/578 Test #33: rect-4 ................................ Passed 0.35 sec test 49 Start 49: rect-17 49: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-17" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha;--pattern;rect;--dim;60 60 60;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;5 5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 49: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 49: Test timeout computed to be: 1500 -27: RETVAL: 0 -27: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha -27: -27: STDERR: -27: Not an error 31: RETVAL: 0 31: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha 31: 31: STDERR: +43: RETVAL: 0 +43: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha +43: +43: STDERR: 31: Not an error -48: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -48: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1 -48: EXPECTED_ERRNO is - 20/578 Test #31: rect-2s ............................... Passed 0.77 sec +43: Not an error + 19/578 Test #43: rect-11-roi ........................... Passed 0.34 sec test 57 Start 57: rectarr-03-a 57: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-03-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;0;--foreground;70;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 57: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 57: Test timeout computed to be: 1500 - 21/578 Test #27: ptv-1 ................................. Passed 0.83 sec +49: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +49: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha;--pattern;rect;--dim;60 60 60;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;5 5 5 +49: EXPECTED_ERRNO is + 20/578 Test #31: rect-2s ............................... Passed 0.41 sec test 62 Start 62: sphere-1 62: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-type;uchar;--pattern;sphere;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;255;--center;0 0 0;--radius;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 62: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 62: Test timeout computed to be: 1500 -49: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -49: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha;--pattern;rect;--dim;60 60 60;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;5 5 5 -49: EXPECTED_ERRNO is -34: RETVAL: 0 -34: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha -34: -34: STDERR: -34: Not an error - 22/578 Test #34: rect-5 ................................ Passed 0.76 sec +57: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +57: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;0;--foreground;70;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1 +57: EXPECTED_ERRNO is +62: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +62: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-type;uchar;--pattern;sphere;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;255;--center;0 0 0;--radius;10 10 10 +62: EXPECTED_ERRNO is +27: RETVAL: 0 +27: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha +27: +27: STDERR: +28: RETVAL: 0 +28: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha +28: +28: STDERR: +27: Not an error + 21/578 Test #27: ptv-1 ................................. Passed 0.55 sec test 63 Start 63: sphere-2 63: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;50 50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 63: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 63: Test timeout computed to be: 1500 -57: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -57: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;0;--foreground;70;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1 -57: EXPECTED_ERRNO is -29: RETVAL: 0 -29: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha -29: Converting from ITK_UCHAR to ITK_UCHAR_VEC -29: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha -29: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha -29: save_ss_img: save_ss_list -29: Done. -29: Doing extraction -29: Keyholizing structure 0. -29: Write: DoseGridScaling = 0.000000 -29: -29: STDERR: -29: Not an error - 23/578 Test #29: rect-1 ................................ Passed 1.77 sec +28: Not an error + 22/578 Test #28: ptv-2 ................................. Passed 0.55 sec test 64 Start 64: sphere-3 64: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-3" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 64: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 64: Test timeout computed to be: 1500 -43: RETVAL: 0 -43: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha -43: -43: STDERR: -43: Not an error - 24/578 Test #43: rect-11-roi ........................... Passed 0.75 sec +63: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +63: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;50 50 50 +63: EXPECTED_ERRNO is +64: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +64: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 +64: EXPECTED_ERRNO is +47: RETVAL: 0 +47: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha +47: +47: STDERR: +47: Not an error + 23/578 Test #47: rect-15 ............................... Passed 0.38 sec test 66 Start 66: sphere-5 66: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-5" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha;--output-type;uchar;--pattern;sphere;--origin;-19 -19 -19;--dim;20 20 20;--spacing;2 2 2;--background;0;--foreground;1;--center;0 0 0;--radius;21" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 66: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 66: Test timeout computed to be: 1500 -62: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -62: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-type;uchar;--pattern;sphere;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;255;--center;0 0 0;--radius;10 10 10 -62: EXPECTED_ERRNO is -7: RETVAL: 0 -7: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha -7: Converting from ITK_UCHAR to ITK_UCHAR_VEC -7: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha -7: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-prefix//Foreground.mha -7: save_ss_img: save_ss_list -7: Done. -7: Doing extraction -7: Keyholizing structure 0. -7: Write: DoseGridScaling = 0.000000 -7: -7: STDERR: -7: Not an error - 25/578 Test #7: donut-1 ............................... Passed 1.72 sec +29: RETVAL: 0 +29: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha +29: Converting from ITK_UCHAR to ITK_UCHAR_VEC +29: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha +29: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha +29: save_ss_img: save_ss_list +29: Done. +29: Doing extraction +29: Keyholizing structure 0. +29: Write: DoseGridScaling = 0.000000 +29: +29: STDERR: +48: RETVAL: 0 +48: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha +48: +48: STDERR: +48: Not an error + 24/578 Test #48: rect-16 ............................... Passed 0.34 sec test 72 Start 72: vf-zero 72: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-zero" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--xf-zero;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 72: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 72: Test timeout computed to be: 1500 -63: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -63: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;50 50 50 -63: EXPECTED_ERRNO is -64: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -64: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 -64: EXPECTED_ERRNO is -66: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -66: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha;--output-type;uchar;--pattern;sphere;--origin;-19 -19 -19;--dim;20 20 20;--spacing;2 2 2;--background;0;--foreground;1;--center;0 0 0;--radius;21 -66: EXPECTED_ERRNO is -44: RETVAL: 0 -44: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha -44: -44: STDERR: -44: Not an error -72: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -72: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--xf-zero;--dim;38 38 38 -72: EXPECTED_ERRNO is - 26/578 Test #44: rect-12 ............................... Passed 0.43 sec +29: Not an error + 25/578 Test #29: rect-1 ................................ Passed 1.20 sec test 73 Start 73: vf-trans-1 73: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--xf-trans;10 0 0;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 73: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 73: Test timeout computed to be: 1500 -73: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -73: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--xf-trans;10 0 0;--dim;38 38 38 -73: EXPECTED_ERRNO is -47: RETVAL: 0 -47: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha -47: -47: STDERR: -47: Not an error - 27/578 Test #47: rect-15 ............................... Passed 0.43 sec +66: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +66: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha;--output-type;uchar;--pattern;sphere;--origin;-19 -19 -19;--dim;20 20 20;--spacing;2 2 2;--background;0;--foreground;1;--center;0 0 0;--radius;21 +66: EXPECTED_ERRNO is +72: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +72: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--xf-zero;--dim;38 38 38 +72: EXPECTED_ERRNO is +34: RETVAL: 0 +34: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha +34: +34: STDERR: +34: Not an error + 26/578 Test #34: rect-5 ................................ Passed 0.64 sec test 74 Start 74: vf-trans-2 74: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 74: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 74: Test timeout computed to be: 1500 -74: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -74: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38 -74: EXPECTED_ERRNO is -45: RETVAL: 0 -45: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha -45: -45: STDERR: -45: Not an error - 28/578 Test #45: rect-13 ............................... Passed 0.57 sec +73: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +73: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--xf-trans;10 0 0;--dim;38 38 38 +73: EXPECTED_ERRNO is +46: RETVAL: 0 +46: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha +46: +46: STDERR: +46: Not an error + 27/578 Test #46: rect-14 ............................... Passed 0.58 sec test 99 Start 99: drr-a 99: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 99: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 99: Test timeout computed to be: 1500 -99: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -99: PARMS is drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -99: EXPECTED_ERRNO is -46: RETVAL: 0 -46: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha -46: -46: STDERR: -46: Not an error - 29/578 Test #46: rect-14 ............................... Passed 0.63 sec +57: RETVAL: 0 +57: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha +57: +57: STDERR: +49: RETVAL: 0 +49: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha +49: +49: STDERR: +49: Not an error + 28/578 Test #49: rect-17 ............................... Passed 0.36 sec test 187 Start 187: plm-convert-dicom-a 187: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 187: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 187: Test timeout computed to be: 1500 -63: RETVAL: 0 -63: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha -63: -63: STDERR: -63: Not an error - 30/578 Test #63: sphere-2 .............................. Passed 0.45 sec +57: Not an error +30: RETVAL: 0 +30: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +30: Doing extraction +30: Keyholizing structure 0. +30: Write: DoseGridScaling = 0.000000 +30: +30: STDERR: +30: Not an error +44: RETVAL: 0 +44: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha +44: +44: STDERR: +44: Not an error +45: RETVAL: 0 +45: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha +45: +45: STDERR: +45: Not an error + 29/578 Test #30: rect-2 ................................ Passed 0.76 sec test 285 Start 285: plm-reg-itk-translation 285: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-translation" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 285: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 285: Test timeout computed to be: 1500 -187: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -187: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix -187: EXPECTED_ERRNO is -62: RETVAL: 0 -62: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha -62: -62: STDERR: -62: Not an error - 31/578 Test #62: sphere-1 .............................. Passed 0.57 sec + 30/578 Test #57: rectarr-03-a .......................... Passed 0.36 sec test 317 Start 317: plm-bsp-mse-h 317: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-h" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 317: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 317: Test timeout computed to be: 1500 -285: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -285: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation.txt -285: EXPECTED_ERRNO is -57: RETVAL: 0 -57: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha -57: -57: STDERR: -57: Not an error - 32/578 Test #57: rectarr-03-a .......................... Passed 0.60 sec + 31/578 Test #44: rect-12 ............................... Passed 0.70 sec test 340 Start 340: plm-bsp-mi-c-2 340: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 340: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 340: Test timeout computed to be: 1500 -66: RETVAL: 0 -66: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha -66: -66: STDERR: -66: Not an error - 33/578 Test #66: sphere-5 .............................. Passed 0.54 sec + 32/578 Test #45: rect-13 ............................... Passed 0.70 sec test 443 Start 443: plm-reg-compose 443: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-compose" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-reg-compose.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 443: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 443: Test timeout computed to be: 1500 -48: RETVAL: 0 -48: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha -48: -48: STDERR: -48: Not an error - 34/578 Test #48: rect-16 ............................... Passed 0.70 sec +74: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +74: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38 +74: EXPECTED_ERRNO is +40: RETVAL: 0 +40: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha +40: +40: STDERR: +40: Not an error + 33/578 Test #40: rect-10-roi-1 ......................... Passed 0.76 sec test 530 Start 530: plm-xf-convert-d 530: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-type;itk_bspline" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 530: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 530: Test timeout computed to be: 1500 +99: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +99: PARMS is drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +99: EXPECTED_ERRNO is +187: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +187: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix +187: EXPECTED_ERRNO is +285: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +285: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation.txt +285: EXPECTED_ERRNO is 317: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 317: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h.txt 317: EXPECTED_ERRNO is -340: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -340: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2.txt -340: EXPECTED_ERRNO is -73: RETVAL: 0 -73: STDOUT: Setting header -73: Origin = -243.4211 -243.4211 -243.4211 -73: Size = 38 38 38 -73: Spacing = 13.1579 13.1579 13.1579 -73: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -73: Header was set -73: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha -73: -73: STDERR: -73: Not an error 443: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 443: PARMS is /build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-reg-compose.txt 443: EXPECTED_ERRNO is - 35/578 Test #73: vf-trans-1 ............................ Passed 0.49 sec +64: RETVAL: 0 +64: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha +64: +64: STDERR: +340: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +340: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2.txt +340: EXPECTED_ERRNO is +64: Not an error +62: RETVAL: 0 +62: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha +62: +62: STDERR: + 34/578 Test #64: sphere-3 .............................. Passed 0.34 sec test 4 Start 4: cyl-2 @@ -3883,42 +3921,32 @@ 530: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 530: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-type;itk_bspline 530: EXPECTED_ERRNO is -32: RETVAL: 0 -32: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -32: Doing extraction -32: Keyholizing structure 0. -32: Write: DoseGridScaling = 0.000000 -32: -32: STDERR: -32: Not an error - 36/578 Test #32: rect-3 ................................ Passed 1.46 sec +63: RETVAL: 0 +63: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha +63: +63: STDERR: +62: Not an error +66: RETVAL: 0 +66: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha +66: +66: STDERR: + 35/578 Test #62: sphere-1 .............................. Passed 0.46 sec test 6 Start 6: cyl-3 6: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-3" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 6: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 6: Test timeout computed to be: 1500 -4: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -4: PARMS is mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd -4: EXPECTED_ERRNO is -64: RETVAL: 0 -64: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha -64: -64: STDERR: -49: RETVAL: 0 -49: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha -49: -49: STDERR: -49: Not an error - 37/578 Test #49: rect-17 ............................... Passed 0.85 sec +63: Not an error + 36/578 Test #63: sphere-2 .............................. Passed 0.38 sec test 22 Start 22: lung-2 22: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=lung-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--filenames-without-uids;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2-dicom;--pattern;lung;--lung-tumor-pos;-5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 22: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 22: Test timeout computed to be: 1500 -64: Not an error - 38/578 Test #64: sphere-3 .............................. Passed 0.77 sec +66: Not an error + 37/578 Test #66: sphere-5 .............................. Passed 0.30 sec test 37 Start 37: rect-8 @@ -3935,26 +3963,29 @@ 72: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha 72: 72: STDERR: +22: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +22: PARMS is synth;--filenames-without-uids;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2-dicom;--pattern;lung;--lung-tumor-pos;-5 +22: EXPECTED_ERRNO is 72: Not an error -30: RETVAL: 0 -30: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -30: Doing extraction -30: Keyholizing structure 0. -30: Write: DoseGridScaling = 0.000000 -30: -30: STDERR: -30: Not an error - 39/578 Test #72: vf-zero ............................... Passed 0.77 sec + 38/578 Test #72: vf-zero ............................... Passed 0.33 sec test 38 Start 38: rect-9 38: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-9" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha;--output-type;uchar;--pattern;rect;--dim;47 47 47;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 38: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 38: Test timeout computed to be: 1500 -6: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -6: PARMS is mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd -6: EXPECTED_ERRNO is - 40/578 Test #30: rect-2 ................................ Passed 1.67 sec +73: RETVAL: 0 +73: STDOUT: Setting header +73: Origin = -243.4211 -243.4211 -243.4211 +73: Size = 38 38 38 +73: Spacing = 13.1579 13.1579 13.1579 +73: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +73: Header was set +73: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha +73: +73: STDERR: +73: Not an error + 39/578 Test #73: vf-trans-1 ............................ Passed 0.36 sec test 52 Start 52: rectarr-01-a @@ -3971,136 +4002,50 @@ 74: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 74: 74: STDERR: -74: Not an error -22: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -22: PARMS is synth;--filenames-without-uids;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2-dicom;--pattern;lung;--lung-tumor-pos;-5 -22: EXPECTED_ERRNO is 37: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 37: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-30 70 -50 50 -50 50 37: EXPECTED_ERRNO is - 41/578 Test #74: vf-trans-2 ............................ Passed 0.64 sec +6: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +6: PARMS is mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd +6: EXPECTED_ERRNO is +74: Not an error + 40/578 Test #74: vf-trans-2 ............................ Passed 0.35 sec test 58 Start 58: rectarr-03 58: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-03" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-5 5 5 15 -5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 58: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 58: Test timeout computed to be: 1500 -38: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -38: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha;--output-type;uchar;--pattern;rect;--dim;47 47 47;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50 -38: EXPECTED_ERRNO is 52: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 52: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;-1000;--foreground;0;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1 52: EXPECTED_ERRNO is +38: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +38: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha;--output-type;uchar;--pattern;rect;--dim;47 47 47;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50 +38: EXPECTED_ERRNO is +32: RETVAL: 0 +32: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +32: Doing extraction +32: Keyholizing structure 0. +32: Write: DoseGridScaling = 0.000000 +32: +32: STDERR: +4: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +4: PARMS is mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd +4: EXPECTED_ERRNO is 58: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 58: PARMS is synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-5 5 5 15 -5 5 58: EXPECTED_ERRNO is -285: RETVAL: 0 -285: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -285: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -285: Launching registration worker thread -285: Inside registration worker thread -285: Doing registration stage -285: [1] xf_in->m_type = 0, xf_out->m_type = 0 -285: Fixed image for this stage: -285: Dim = 19 19 19 -285: Origin = -24.3421 -24.3421 -24.3421 -285: Spacing = 2.63158 2.63158 2.63158 -285: Direction Cosines = -285: 1 0 0 -285: 0 1 0 -285: 0 0 1 -285: Moving image for this stage: -285: Dim = 19 19 19 -285: Origin = -24.3421 -24.3421 -24.3421 -285: Spacing = 2.63158 2.63158 2.63158 -285: Direction Cosines = -285: 1 0 0 -285: 0 1 0 -285: 0 0 1 -285: Initial Parameters = [0, 0, 0] -285: Starting ITK registration -285: StartEvent: [0, 0, 0] -285: MSE [ 0, 0,10.00] 18756.235 [9.999997615028182, -0.004883617032987221, -0.004883617032987353] -285: :: [0, 0, 0] -285: * -285: MSE [ 1, 1, 5.00] 1.116 [5.318441699151527, 1.2366948554205817, 1.2366948554205934] -18755.12 -285: :: [9.999997615028182, -0.004883617032987221, -0.004883617032987353] -285: * -285: MSE [ 2, 2, 2.50] 5544.602 [7.61065194008583, 0.5310844064631239, 0.5310844064631283] 5543.49 -285: MSE [ 3, 3, 2.50] 1453.699 [9.961460585442484, -0.07045474975050192, -0.07045474975050381] -4090.90 -285: MSE [ 4, 4, 1.25] 4.252 [10.130622373667528, 0.8052975809356612, 0.8052975809356663] -1449.45 -285: EndEvent: [10.130622373667528, 0.8052975809356612, 0.8052975809356663] -285: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded. -285: ITK registration complete -285: [2] xf_out->m_type = 1, xf_in->m_type = 0 -285: ** Registration worker thread finished. -285: Writing transformation ... -285: Warping... -285: plm_warp_itk: xform_to_itk_vf -285: plm_warp_itk: convert_to_itk -285: plm_warp_itk: warping... -285: Saving image... -285: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha -285: Saving vf... -285: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha -285: Load: 0.170254 -285: Run: 0.152234 -285: Save: 0.0345221 -285: Total: 0.35701 -285: Finished! -285: -285: STDERR: -285: Not an error -187: RETVAL: 0 -187: STDOUT: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542141.1683112258.256389RTSTRUCT -187: Found DCM_ReferencedFrameOfReferenceSequence! -187: Found DCM_RTReferencedStudySequence! -187: Trying to load rt structure set. -187: Adding structure (1), Foreground -187: Structure 1 has color 255\0\0 -187: Setting PIH from rasterization heuristicsPIH is: -187: Origin = -55.2632 -55.2632 -46.0526 -187: Size = 512 512 7 -187: Spacing = 0.2159 0.2159 13.1579 -187: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -187: Rt_study_warp: Convert ss_img to cxt. -187: Rt_study_warp: Apply dicom_dir. -187: Rt_study_warp: Set geometry from PIH. -187: Rt_study_warp: Set rasterization geometry. -187: rast_dim = 512 512 7 -187: rast_offset = -55.2632 -55.2632 -46.0526 -187: rast_spacing = 0.215872 0.215872 13.1579 -187: Rt_study_warp: warp and save ss. -187: Warp_and_save_ss: seg->rasterize -187: Rasterizing... -187: Converting... -187: Finished rasterization. -187: Warp_and_save_ss: save_ss_img -187: save_ss_img: save_ss_image -187: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha -187: save_ss_img: save_ss_list -187: Done. -187: save_ss_img: save_prefix -187: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix/Foreground.mha -187: save_ss_img: save_cxt -187: Finished! -187: -187: STDERR: -187: Not an error - 42/578 Test #187: plm-convert-dicom-a ................... Passed 0.97 sec +32: Not an error + 41/578 Test #32: rect-3 ................................ Passed 1.09 sec test 59 Start 59: rectarr-04 59: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-04" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 59: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 59: Test timeout computed to be: 1500 - 43/578 Test #285: plm-reg-itk-translation ............... Passed 0.96 sec -test 67 - Start 67: sphere-6 - -67: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-6" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -67: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -67: Test timeout computed to be: 1500 +59: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +59: PARMS is synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5 +59: EXPECTED_ERRNO is 317: RETVAL: 0 317: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 317: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -4131,22 +4076,22 @@ 317: Setting nmax, mmax = 375 21 317: >>> START 317: This problem is unconstrained. -317: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.012 s ] +317: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.003 s ] 317: CMIN 0.00 CAVG 0.00 CMAX 0.00 317: LSD 0.00 -317: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.004 s ] +317: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.012 s ] 317: CMIN -0.07 CAVG 0.01 CMAX 0.68 317: LSD 1.00 -317: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.004 s ] +317: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.003 s ] 317: CMIN -0.35 CAVG 0.05 CMAX 3.40 317: LSD 5.00 317: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.003 s ] 317: CMIN -1.48 CAVG 0.20 CMAX 14.26 317: LSD 21.00 -317: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.009 s ] +317: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.003 s ] 317: CMIN -1.74 CAVG 0.44 CMAX 32.50 317: LSD 27.95 -317: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.008 s ] +317: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.003 s ] 317: CMIN -1.73 CAVG 0.34 CMAX 23.99 317: LSD 13.11 317: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -4177,15 +4122,58 @@ 317: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha 317: Saving vf... 317: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-vf.mha -317: Load: 0.109186 -317: Run: 0.0903759 -317: Save: 0.101567 -317: Total: 0.301129 +317: Load: 0.0479021 +317: Run: 0.0365801 +317: Save: 0.0746439 +317: Total: 0.159126 317: Finished! 317: 317: STDERR: 317: Not an error - 44/578 Test #317: plm-bsp-mse-h ......................... Passed 0.90 sec +187: RETVAL: 0 +187: STDOUT: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379328.1717523405.358730RTSTRUCT +187: Found DCM_ReferencedFrameOfReferenceSequence! +187: Found DCM_RTReferencedStudySequence! +187: Trying to load rt structure set. +187: Adding structure (1), Foreground +187: Structure 1 has color 255\0\0 +187: Setting PIH from rasterization heuristicsPIH is: +187: Origin = -55.2632 -55.2632 -46.0526 +187: Size = 512 512 7 +187: Spacing = 0.2159 0.2159 13.1579 +187: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +187: Rt_study_warp: Convert ss_img to cxt. +187: Rt_study_warp: Apply dicom_dir. +187: Rt_study_warp: Set geometry from PIH. +187: Rt_study_warp: Set rasterization geometry. +187: rast_dim = 512 512 7 +187: rast_offset = -55.2632 -55.2632 -46.0526 +187: rast_spacing = 0.215872 0.215872 13.1579 +187: Rt_study_warp: warp and save ss. +187: Warp_and_save_ss: seg->rasterize +187: Rasterizing... +187: Converting... +187: Finished rasterization. +187: Warp_and_save_ss: save_ss_img +187: save_ss_img: save_ss_image +187: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha +187: save_ss_img: save_ss_list +187: Done. +187: save_ss_img: save_prefix +187: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix/Foreground.mha +187: save_ss_img: save_cxt +187: Finished! +187: +187: STDERR: +187: Not an error + 42/578 Test #187: plm-convert-dicom-a ................... Passed 0.56 sec +test 67 + Start 67: sphere-6 + +67: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-6" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +67: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +67: Test timeout computed to be: 1500 + 43/578 Test #317: plm-bsp-mse-h ......................... Passed 0.54 sec test 68 Start 68: sphere-7 @@ -4195,91 +4183,119 @@ 67: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 67: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 67: EXPECTED_ERRNO is +38: RETVAL: 0 +38: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha +38: +38: STDERR: +38: Not an error +285: RETVAL: 0 +285: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +285: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +285: Launching registration worker thread +285: Inside registration worker thread +285: Doing registration stage +285: [1] xf_in->m_type = 0, xf_out->m_type = 0 +285: Fixed image for this stage: +285: Dim = 19 19 19 +285: Origin = -24.3421 -24.3421 -24.3421 +285: Spacing = 2.63158 2.63158 2.63158 +285: Direction Cosines = +285: 1 0 0 +285: 0 1 0 +285: 0 0 1 +285: Moving image for this stage: +285: Dim = 19 19 19 +285: Origin = -24.3421 -24.3421 -24.3421 +285: Spacing = 2.63158 2.63158 2.63158 +285: Direction Cosines = +285: 1 0 0 +285: 0 1 0 +285: 0 0 1 +285: Initial Parameters = [0, 0, 0] +285: Starting ITK registration +285: StartEvent: [0, 0, 0] +285: MSE [ 0, 0,10.00] 18756.235 [9.999997615028182, -0.004883617032987453, -0.004883617032986772] +285: :: [0, 0, 0] +285: * +285: MSE [ 1, 1, 5.00] 1.116 [5.318441699151488, 1.2366948554205894, 1.2366948554204342] -18755.12 +285: :: [9.999997615028182, -0.004883617032987453, -0.004883617032986772] +285: * +285: MSE [ 2, 2, 2.50] 5544.602 [7.610651940085816, 0.5310844064631238, 0.5310844064630558] 5543.49 +285: MSE [ 3, 3, 2.50] 1453.699 [9.961460585442492, -0.07045474975050436, -0.0704547497504936] -4090.90 +285: MSE [ 4, 4, 1.25] 4.252 [10.13062237366743, 0.805297580935725, 0.8052975809356303] -1449.45 +285: EndEvent: [10.13062237366743, 0.805297580935725, 0.8052975809356303] +285: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded. +285: ITK registration complete +285: [2] xf_out->m_type = 1, xf_in->m_type = 0 +285: ** Registration worker thread finished. +285: Writing transformation ... +285: Warping... +285: plm_warp_itk: xform_to_itk_vf +285: plm_warp_itk: convert_to_itk +285: plm_warp_itk: warping... +285: Saving image... +285: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha +285: Saving vf... +285: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha +285: Load: 0.106643 +285: Run: 0.11498 +285: Save: 0.028595 +285: Total: 0.250218 +285: Finished! +285: +285: STDERR: +285: Not an error 68: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 68: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 68: EXPECTED_ERRNO is -59: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -59: PARMS is synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5 -59: EXPECTED_ERRNO is -52: RETVAL: 0 -52: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha -52: -52: STDERR: -52: Not an error - 45/578 Test #52: rectarr-01-a .......................... Passed 0.72 sec + 44/578 Test #285: plm-reg-itk-translation ............... Passed 0.65 sec test 75 Start 75: vf-radial-1 75: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-radial-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha;--xf-radial;--radial-center;0 0 0;--radial-mag;10;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 75: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 75: Test timeout computed to be: 1500 -37: RETVAL: 0 -37: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha -37: -37: STDERR: -37: Not an error - 46/578 Test #37: rect-8 ................................ Passed 0.79 sec + 45/578 Test #38: rect-9 ................................ Passed 0.47 sec test 91 Start 91: plm-diff-a 91: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=diff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 91: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 91: Test timeout computed to be: 1500 -99: RETVAL: 0 -99: STDOUT: Rendering DRR 0 -99: I/O time: 0.000483 sec -99: Rendering DRR 1 -99: I/O time: 0.000486 sec -99: Rendering DRR 2 -99: I/O time: 0.000450 sec -99: Rendering DRR 3 -99: I/O time: 0.000452 sec -99: Rendering DRR 4 -99: I/O time: 0.000473 sec -99: Rendering DRR 5 -99: I/O time: 0.000430 sec -99: Rendering DRR 6 -99: I/O time: 0.000383 sec -99: Rendering DRR 7 -99: I/O time: 0.000474 sec -99: Rendering DRR 8 -99: I/O time: 0.000434 sec -99: Rendering DRR 9 -99: I/O time: 0.000485 sec -99: Rendering DRR 10 -99: I/O time: 0.000513 sec -99: Rendering DRR 11 -99: I/O time: 0.000414 sec -99: Rendering DRR 12 -99: I/O time: 0.000475 sec -99: Rendering DRR 13 -99: I/O time: 0.000428 sec -99: Rendering DRR 14 -99: I/O time: 0.000427 sec -99: Rendering DRR 15 -99: I/O time: 0.000387 sec -99: Rendering DRR 16 -99: I/O time: 0.000514 sec -99: Rendering DRR 17 -99: I/O time: 0.000416 sec -99: Rendering DRR 18 -99: I/O time: 0.000413 sec -99: Rendering DRR 19 -99: I/O time: 0.000585 sec -99: Total time: 0.552502 secs -99: -99: STDERR: -99: Not an error +91: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +91: PARMS is diff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha +91: EXPECTED_ERRNO is 75: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 75: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha;--xf-radial;--radial-center;0 0 0;--radial-mag;10;--dim;38 38 38 75: EXPECTED_ERRNO is - 47/578 Test #99: drr-a ................................. Passed 1.33 sec +37: RETVAL: 0 +37: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha +37: +37: STDERR: +37: Not an error + 46/578 Test #37: rect-8 ................................ Passed 0.68 sec test 94 Start 94: plm-diff-b 94: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=diff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 94: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 94: Test timeout computed to be: 1500 +6: RETVAL: 0 +6: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd +6: Finished! +6: +6: STDERR: +6: Not an error + 47/578 Test #6: cyl-3 ................................. Passed 0.78 sec +test 102 + Start 102: drr-b + +102: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b/out_;-i;uniform;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +102: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +102: Test timeout computed to be: 1500 +94: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +94: PARMS is diff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha +94: EXPECTED_ERRNO is 530: RETVAL: 0 530: STDOUT: bspline_xform_initialize 530: rdims = (2,2,2) @@ -4290,96 +4306,13 @@ 530: 530: STDERR: 530: Not an error - 48/578 Test #530: plm-xf-convert-d ...................... Passed 1.07 sec -test 102 - Start 102: drr-b - -102: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b/out_;-i;uniform;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -102: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -102: Test timeout computed to be: 1500 -91: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -91: PARMS is diff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha -91: EXPECTED_ERRNO is -4: RETVAL: 0 -4: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd -4: Finished! -4: -4: STDERR: -4: Not an error -6: RETVAL: 0 -6: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd -6: Finished! -6: -6: STDERR: -6: Not an error - 49/578 Test #6: cyl-3 ................................. Passed 1.02 sec + 48/578 Test #530: plm-xf-convert-d ...................... Passed 0.89 sec test 105 Start 105: drr-c 105: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c/out_;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 105: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 105: Test timeout computed to be: 1500 - 50/578 Test #4: cyl-2 ................................. Passed 1.07 sec -test 108 - Start 108: fdk-cpu-a - -108: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -108: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -108: Test timeout computed to be: 1500 -38: RETVAL: 0 -38: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha -38: -38: STDERR: -38: Not an error - 51/578 Test #38: rect-9 ................................ Passed 0.90 sec -test 111 - Start 111: fdk-cpu-d - -111: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -111: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -111: Test timeout computed to be: 1500 -94: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -94: PARMS is diff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha -94: EXPECTED_ERRNO is -102: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -102: PARMS is drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b/out_;-i;uniform;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -102: EXPECTED_ERRNO is -108: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -108: PARMS is fdk;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha -108: EXPECTED_ERRNO is -105: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -105: PARMS is drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c/out_;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha -105: EXPECTED_ERRNO is -111: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -111: PARMS is fdk;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha -111: EXPECTED_ERRNO is -58: RETVAL: 0 -58: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha -58: -58: STDERR: -58: Not an error - 52/578 Test #58: rectarr-03 ............................ Passed 1.01 sec -test 114 - Start 114: landmark-warp-a - -114: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;tps;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -114: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -114: Test timeout computed to be: 1500 -114: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -114: PARMS is lm-warp;-a;tps;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha -114: EXPECTED_ERRNO is -67: RETVAL: 0 -67: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha -67: -67: STDERR: -67: Not an error - 53/578 Test #67: sphere-6 .............................. Passed 0.57 sec -test 119 - Start 119: landmark-warp-b - -119: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;wendland;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -119: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -119: Test timeout computed to be: 1500 443: RETVAL: 0 443: STDOUT: Loading fixed image [0]: gauss-2.mha 443: Loading moving image [0]: gauss-5.mha @@ -4410,22 +4343,22 @@ 443: Setting nmax, mmax = 375 21 443: >>> START 443: This problem is unconstrained. -443: [ 0, 0] MSE 13049.518 NV 6859 GM -1702.194 GN 529 [ 0.061 s ] +443: [ 0, 0] MSE 13049.518 NV 6859 GM -1702.194 GN 529 [ 0.045 s ] 443: CMIN 0.00 CAVG 0.00 CMAX 0.00 443: LSD 0.00 -443: [ 0, 1] MSE 12469.547 NV 6859 GM -1637.952 GN 509 [ 0.020 s ] +443: [ 0, 1] MSE 12469.547 NV 6859 GM -1637.952 GN 509 [ 0.015 s ] 443: CMIN -0.05 CAVG 0.01 CMAX 0.74 443: LSD 1.00 -443: [ 0, 2] MSE 10357.764 NV 6859 GM -1646.825 GN 515 [ 0.043 s ] +443: [ 0, 2] MSE 10357.764 NV 6859 GM -1646.825 GN 515 [ 0.018 s ] 443: CMIN -0.26 CAVG 0.04 CMAX 3.71 443: LSD 5.00 -443: [ 0, 3] MSE 1944.747 NV 6295 GM -809.887 GN 247 [ 0.027 s ] +443: [ 0, 3] MSE 1944.747 NV 6295 GM -809.887 GN 247 [ 0.020 s ] 443: CMIN -1.11 CAVG 0.18 CMAX 15.56 443: LSD 21.00 -443: [ 1, 4] MSE 891.268 NV 5678 GM 504.524 GN 187 [ 0.019 s ] +443: [ 1, 4] MSE 891.268 NV 5678 GM 504.524 GN 187 [ 0.021 s ] 443: CMIN -1.50 CAVG 0.35 CMAX 29.17 443: LSD 19.59 -443: [ 2, 5] MSE 117.931 NV 5939 GM -11.010 GN 12.8 [ 0.033 s ] +443: [ 2, 5] MSE 117.931 NV 5939 GM -11.010 GN 12.8 [ 0.026 s ] 443: CMIN -1.27 CAVG 0.29 CMAX 23.54 443: LSD 8.47 443: [ 3, 6] MSE 110.217 NV 5931 GM -24.361 GN 9.26 [ 0.032 s ] @@ -4434,13 +4367,13 @@ 443: [ 4, 7] MSE 101.235 NV 5928 GM -14.715 GN 10.7 [ 0.028 s ] 443: CMIN -1.88 CAVG 0.29 CMAX 23.41 443: LSD 1.34 -443: [ 5, 8] MSE 89.096 NV 5930 GM -23.801 GN 14.1 [ 0.017 s ] +443: [ 5, 8] MSE 89.096 NV 5930 GM -23.801 GN 14.1 [ 0.015 s ] 443: CMIN -2.79 CAVG 0.31 CMAX 22.44 443: LSD 2.74 -443: [ 6, 9] MSE 76.413 NV 5947 GM 60.289 GN 16.9 [ 0.031 s ] +443: [ 6, 9] MSE 76.413 NV 5947 GM 60.289 GN 16.9 [ 0.020 s ] 443: CMIN -4.30 CAVG 0.34 CMAX 20.28 443: LSD 5.25 -443: [ 7, 10] MSE 68.670 NV 5976 GM -50.552 GN 14.5 [ 0.036 s ] +443: [ 7, 10] MSE 68.670 NV 5976 GM -50.552 GN 14.5 [ 0.028 s ] 443: CMIN -6.00 CAVG 0.36 CMAX 17.22 443: LSD 5.96 443: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -4471,42 +4404,69 @@ 443: Trying to write image to plm-reg-compose-img.mha 443: Saving vf... 443: Trying to write image to plm-reg-compose-vf.mha -443: Load: 0.194541 -443: Run: 0.386526 -443: Save: 0.0949051 -443: Total: 0.675972 +443: Load: 0.0402968 +443: Run: 0.28928 +443: Save: 0.079093 +443: Total: 0.40867 443: Finished! 443: 443: STDERR: 443: Not an error - 54/578 Test #443: plm-reg-compose ....................... Passed 1.43 sec +102: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +102: PARMS is drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b/out_;-i;uniform;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +102: EXPECTED_ERRNO is + 49/578 Test #443: plm-reg-compose ....................... Passed 0.92 sec +test 114 + Start 114: landmark-warp-a + +114: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;tps;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +114: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +114: Test timeout computed to be: 1500 +105: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +105: PARMS is drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c/out_;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha +105: EXPECTED_ERRNO is +67: RETVAL: 0 +67: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha +67: +67: STDERR: +67: Not an error +114: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +114: PARMS is lm-warp;-a;tps;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha +114: EXPECTED_ERRNO is + 50/578 Test #67: sphere-6 .............................. Passed 0.48 sec +test 119 + Start 119: landmark-warp-b + +119: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;wendland;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +119: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +119: Test timeout computed to be: 1500 +59: RETVAL: 0 +59: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha +59: +59: STDERR: +52: RETVAL: 0 +52: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha +52: +52: STDERR: +52: Not an error + 51/578 Test #52: rectarr-01-a .......................... Passed 0.82 sec test 124 Start 124: landmark-warp-c 124: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;gauss;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 124: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 124: Test timeout computed to be: 1500 -119: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -119: PARMS is lm-warp;-a;wendland;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0 -119: EXPECTED_ERRNO is -68: RETVAL: 0 -68: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha -68: -68: STDERR: -68: Not an error -124: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -124: PARMS is lm-warp;-a;gauss;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0 -124: EXPECTED_ERRNO is - 55/578 Test #68: sphere-7 .............................. Passed 0.63 sec +59: Not an error + 52/578 Test #59: rectarr-04 ............................ Passed 0.73 sec test 130 Start 130: plm-add-a 130: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=add;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 130: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 130: Test timeout computed to be: 1500 -130: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -130: PARMS is add;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -130: EXPECTED_ERRNO is +119: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +119: PARMS is lm-warp;-a;wendland;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0 +119: EXPECTED_ERRNO is 75: RETVAL: 0 75: STDOUT: Setting header 75: Origin = -243.4211 -243.4211 -243.4211 @@ -4518,61 +4478,196 @@ 75: 75: STDERR: 75: Not an error - 56/578 Test #75: vf-radial-1 ........................... Passed 0.63 sec + 53/578 Test #75: vf-radial-1 ........................... Passed 0.49 sec test 133 Start 133: plm-add-b 133: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=average;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 133: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 133: Test timeout computed to be: 1500 -133: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -133: PARMS is average;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -133: EXPECTED_ERRNO is -59: RETVAL: 0 -59: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha -59: -59: STDERR: -59: Not an error - 57/578 Test #59: rectarr-04 ............................ Passed 0.96 sec +124: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +124: PARMS is lm-warp;-a;gauss;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0 +124: EXPECTED_ERRNO is +130: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +130: PARMS is add;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +130: EXPECTED_ERRNO is +58: RETVAL: 0 +58: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha +58: +58: STDERR: +4: RETVAL: 0 +4: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd +4: Finished! +4: +4: STDERR: +58: Not an error + 54/578 Test #58: rectarr-03 ............................ Passed 0.91 sec test 136 Start 136: plm-add-vf-a 136: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=add;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 136: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 136: Test timeout computed to be: 1500 -136: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -136: PARMS is add;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha -136: EXPECTED_ERRNO is -91: RETVAL: 0 -91: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha -91: -91: STDERR: -91: Not an error - 58/578 Test #91: plm-diff-a ............................ Passed 0.86 sec +68: RETVAL: 0 +68: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha +68: +68: STDERR: +68: Not an error +4: Not an error + 55/578 Test #68: sphere-7 .............................. Passed 0.65 sec test 139 Start 139: plm-add-vf-b 139: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=average;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 139: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 139: Test timeout computed to be: 1500 -139: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -139: PARMS is average;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha -139: EXPECTED_ERRNO is -94: RETVAL: 0 -94: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha -94: -94: STDERR: -94: Not an error - 59/578 Test #94: plm-diff-b ............................ Passed 0.94 sec +133: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +133: PARMS is average;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +133: EXPECTED_ERRNO is + 56/578 Test #4: cyl-2 ................................. Passed 1.12 sec test 142 Start 142: plm-adjust-a 142: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd;--pw-linear;0,100" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 142: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 142: Test timeout computed to be: 1500 +136: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +136: PARMS is add;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha +136: EXPECTED_ERRNO is +99: RETVAL: 0 +99: STDOUT: Rendering DRR 0 +99: I/O time: 0.000493 sec +99: Rendering DRR 1 +99: I/O time: 0.000490 sec +99: Rendering DRR 2 +99: I/O time: 0.000449 sec +99: Rendering DRR 3 +99: I/O time: 0.000447 sec +99: Rendering DRR 4 +99: I/O time: 0.000406 sec +99: Rendering DRR 5 +99: I/O time: 0.000443 sec +99: Rendering DRR 6 +99: I/O time: 0.000396 sec +99: Rendering DRR 7 +99: I/O time: 0.000542 sec +99: Rendering DRR 8 +99: I/O time: 0.000453 sec +99: Rendering DRR 9 +99: I/O time: 0.000506 sec +99: Rendering DRR 10 +99: I/O time: 0.000475 sec +99: Rendering DRR 11 +99: I/O time: 0.000488 sec +99: Rendering DRR 12 +99: I/O time: 0.000401 sec +99: Rendering DRR 13 +99: I/O time: 0.000472 sec +99: Rendering DRR 14 +99: I/O time: 0.000388 sec +99: Rendering DRR 15 +99: I/O time: 0.000501 sec +99: Rendering DRR 16 +99: I/O time: 0.028052 sec +99: Rendering DRR 17 +99: I/O time: 0.028199 sec +99: Rendering DRR 18 +99: I/O time: 0.020134 sec +99: Rendering DRR 19 +99: I/O time: 0.000510 sec +99: Total time: 0.583597 secs +99: +99: STDERR: 142: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 142: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd;--pw-linear;0,100 142: EXPECTED_ERRNO is +99: Not an error + 57/578 Test #99: drr-a ................................. Passed 1.31 sec +test 108 + Start 108: fdk-cpu-a + +108: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +108: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +108: Test timeout computed to be: 1500 +139: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +139: PARMS is average;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha +139: EXPECTED_ERRNO is +91: RETVAL: 0 +91: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha +91: +91: STDERR: +91: Not an error + 58/578 Test #91: plm-diff-a ............................ Passed 0.64 sec +test 111 + Start 111: fdk-cpu-d + +111: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +111: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +111: Test timeout computed to be: 1500 +108: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +108: PARMS is fdk;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha +108: EXPECTED_ERRNO is +111: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +111: PARMS is fdk;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha +111: EXPECTED_ERRNO is +94: RETVAL: 0 +94: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha +94: +94: STDERR: +94: Not an error + 59/578 Test #94: plm-diff-b ............................ Passed 0.79 sec +test 145 + Start 145: plm-adjust-b + +145: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +145: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +145: Test timeout computed to be: 1500 +136: RETVAL: 0 +136: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd +136: +136: STDERR: +136: Not an error +133: RETVAL: 0 +133: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd +133: +133: STDERR: +133: Not an error + 60/578 Test #133: plm-add-b ............................. Passed 0.50 sec +test 148 + Start 148: plm-adjust-c + +148: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +148: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +148: Test timeout computed to be: 1500 + 61/578 Test #136: plm-add-vf-a .......................... Passed 0.48 sec +test 151 + Start 151: plm-adjust-d + +151: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +151: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +151: Test timeout computed to be: 1500 +148: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +148: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1 +148: EXPECTED_ERRNO is +145: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +145: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1 +145: EXPECTED_ERRNO is +151: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +151: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0 +151: EXPECTED_ERRNO is +130: RETVAL: 0 +130: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd +130: +130: STDERR: +130: Not an error +142: RETVAL: 0 +142: STDOUT: Applying piece-wise linear transform... +142: done. +142: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd +142: Finished! +142: +142: STDERR: +142: Not an error 124: RETVAL: 0 124: STDOUT: 74.000000 124: 74.000000 @@ -4610,14 +4705,28 @@ 124: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha 124: 124: STDERR: + 62/578 Test #130: plm-add-a ............................. Passed 0.75 sec +test 154 + Start 154: plm-adjust-e + +154: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd;--linear;1000,2.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +154: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +154: Test timeout computed to be: 1500 124: Not an error - 60/578 Test #124: landmark-warp-c ....................... Passed 0.84 sec -test 145 - Start 145: plm-adjust-b + 63/578 Test #124: landmark-warp-c ....................... Passed 0.79 sec +test 157 + Start 157: plm-adjust-f -145: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -145: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -145: Test timeout computed to be: 1500 +157: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +157: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +157: Test timeout computed to be: 1500 + 64/578 Test #142: plm-adjust-a .......................... Passed 0.65 sec +test 160 + Start 160: plm-adjust-g + +160: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-g" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +160: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +160: Test timeout computed to be: 1500 114: RETVAL: 0 114: STDOUT: Hello world 114: Gonna convert pointsets @@ -4649,168 +4758,80 @@ 114: 114: STDERR: 114: Not an error - 61/578 Test #114: landmark-warp-a ....................... Passed 1.04 sec -test 148 - Start 148: plm-adjust-c - -148: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -148: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -148: Test timeout computed to be: 1500 -145: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -145: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1 -145: EXPECTED_ERRNO is -136: RETVAL: 0 -136: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd -136: -136: STDERR: -136: Not an error - 62/578 Test #136: plm-add-vf-a .......................... Passed 0.65 sec -test 151 - Start 151: plm-adjust-d - -151: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -151: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -151: Test timeout computed to be: 1500 -151: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -151: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0 -151: EXPECTED_ERRNO is -139: RETVAL: 0 -139: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd -139: -139: STDERR: -139: Not an error - 63/578 Test #139: plm-add-vf-b .......................... Passed 0.66 sec -test 154 - Start 154: plm-adjust-e + 65/578 Test #114: landmark-warp-a ....................... Passed 0.95 sec +test 163 + Start 163: plm-adjust-h -154: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd;--linear;1000,2.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -154: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -154: Test timeout computed to be: 1500 -148: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -148: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1 -148: EXPECTED_ERRNO is +163: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-h" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +163: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +163: Test timeout computed to be: 1500 154: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 154: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd;--linear;1000,2.5 154: EXPECTED_ERRNO is -130: RETVAL: 0 -130: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd -130: -130: STDERR: -130: Not an error - 64/578 Test #130: plm-add-a ............................. Passed 1.30 sec -test 157 - Start 157: plm-adjust-f - -157: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -157: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -157: Test timeout computed to be: 1500 +160: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +160: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha +160: EXPECTED_ERRNO is +157: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +157: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5 +157: EXPECTED_ERRNO is 102: RETVAL: 0 102: STDOUT: Rendering DRR 0 -102: I/O time: 0.000446 sec +102: I/O time: 0.000505 sec 102: Rendering DRR 1 -102: I/O time: 0.000425 sec +102: I/O time: 0.000429 sec 102: Rendering DRR 2 -102: I/O time: 0.000431 sec +102: I/O time: 0.000457 sec 102: Rendering DRR 3 -102: I/O time: 0.000351 sec +102: I/O time: 0.000471 sec 102: Rendering DRR 4 -102: I/O time: 0.000373 sec +102: I/O time: 0.000443 sec 102: Rendering DRR 5 -102: I/O time: 0.000452 sec +102: I/O time: 0.000380 sec 102: Rendering DRR 6 -102: I/O time: 0.000470 sec +102: I/O time: 0.000451 sec 102: Rendering DRR 7 -102: I/O time: 0.000393 sec +102: I/O time: 0.000461 sec 102: Rendering DRR 8 -102: I/O time: 0.000409 sec +102: I/O time: 0.000422 sec 102: Rendering DRR 9 -102: I/O time: 0.000512 sec +102: I/O time: 0.000437 sec 102: Rendering DRR 10 -102: I/O time: 0.000509 sec +102: I/O time: 0.000366 sec 102: Rendering DRR 11 -102: I/O time: 0.000368 sec +102: I/O time: 0.000393 sec 102: Rendering DRR 12 -102: I/O time: 0.000462 sec +102: I/O time: 0.000423 sec 102: Rendering DRR 13 -102: I/O time: 0.000443 sec +102: I/O time: 0.000416 sec 102: Rendering DRR 14 -102: I/O time: 0.000447 sec +102: I/O time: 0.000494 sec 102: Rendering DRR 15 -102: I/O time: 0.000437 sec +102: I/O time: 0.000404 sec 102: Rendering DRR 16 -102: I/O time: 0.000455 sec +102: I/O time: 0.000493 sec 102: Rendering DRR 17 -102: I/O time: 0.000451 sec +102: I/O time: 0.000383 sec 102: Rendering DRR 18 -102: I/O time: 0.000403 sec +102: I/O time: 0.000489 sec 102: Rendering DRR 19 -102: I/O time: 0.000480 sec -102: Total time: 0.87236 secs +102: I/O time: 0.000514 sec +102: Total time: 0.513903 secs 102: 102: STDERR: 102: Not an error - 65/578 Test #102: drr-b ................................. Passed 1.78 sec -test 160 - Start 160: plm-adjust-g - -160: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-g" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -160: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -160: Test timeout computed to be: 1500 -105: RETVAL: 0 -105: STDOUT: Rendering DRR 0 -105: I/O time: 0.000469 sec -105: Rendering DRR 1 -105: I/O time: 0.000388 sec -105: Rendering DRR 2 -105: I/O time: 0.000468 sec -105: Rendering DRR 3 -105: I/O time: 0.000443 sec -105: Rendering DRR 4 -105: I/O time: 0.000415 sec -105: Rendering DRR 5 -105: I/O time: 0.000465 sec -105: Rendering DRR 6 -105: I/O time: 0.000406 sec -105: Rendering DRR 7 -105: I/O time: 0.000415 sec -105: Rendering DRR 8 -105: I/O time: 0.000369 sec -105: Rendering DRR 9 -105: I/O time: 0.000496 sec -105: Rendering DRR 10 -105: I/O time: 0.000478 sec -105: Rendering DRR 11 -105: I/O time: 0.000454 sec -105: Rendering DRR 12 -105: I/O time: 0.000466 sec -105: Rendering DRR 13 -105: I/O time: 0.000372 sec -105: Rendering DRR 14 -105: I/O time: 0.000383 sec -105: Rendering DRR 15 -105: I/O time: 0.000435 sec -105: Rendering DRR 16 -105: I/O time: 0.000345 sec -105: Rendering DRR 17 -105: I/O time: 0.000378 sec -105: Rendering DRR 18 -105: I/O time: 0.000409 sec -105: Rendering DRR 19 -105: I/O time: 0.000419 sec -105: Total time: 0.875297 secs -105: -105: STDERR: -105: Not an error -157: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -157: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5 -157: EXPECTED_ERRNO is - 66/578 Test #105: drr-c ................................. Passed 1.77 sec -test 163 - Start 163: plm-adjust-h + 66/578 Test #102: drr-b ................................. Passed 1.06 sec +test 166 + Start 166: plm-adjust-i -163: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-h" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -163: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -163: Test timeout computed to be: 1500 +166: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-i" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd;--local-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd;--local-shift-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +166: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +166: Test timeout computed to be: 1500 +163: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +163: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha +163: EXPECTED_ERRNO is +166: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +166: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd;--local-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd;--local-shift-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd +166: EXPECTED_ERRNO is 119: RETVAL: 0 119: STDOUT: 180.000000 119: 180.000000 @@ -4849,96 +4870,92 @@ 119: 119: STDERR: 119: Not an error -160: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -160: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha -160: EXPECTED_ERRNO is - 67/578 Test #119: landmark-warp-b ....................... Passed 1.52 sec -test 166 - Start 166: plm-adjust-i - -166: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-i" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd;--local-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd;--local-shift-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -166: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -166: Test timeout computed to be: 1500 -166: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -166: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd;--local-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd;--local-shift-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd -166: EXPECTED_ERRNO is -163: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -163: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha -163: EXPECTED_ERRNO is -142: RETVAL: 0 -142: STDOUT: Applying piece-wise linear transform... -142: done. -142: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd -142: Finished! -142: -142: STDERR: -142: Not an error - 68/578 Test #142: plm-adjust-a .......................... Passed 1.02 sec + 67/578 Test #119: landmark-warp-b ....................... Passed 1.07 sec test 169 Start 169: plm-adjust-j 169: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-j" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd;--local-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd;--local-shift-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd;--local-blending-off" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 169: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 169: Test timeout computed to be: 1500 -133: RETVAL: 0 -133: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd -133: -133: STDERR: -133: Not an error - 69/578 Test #133: plm-add-b ............................. Passed 1.42 sec +169: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +169: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd;--local-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd;--local-shift-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd;--local-blending-off +169: EXPECTED_ERRNO is +105: RETVAL: 0 +105: STDOUT: Rendering DRR 0 +105: I/O time: 0.000406 sec +105: Rendering DRR 1 +105: I/O time: 0.000354 sec +105: Rendering DRR 2 +105: I/O time: 0.000364 sec +105: Rendering DRR 3 +105: I/O time: 0.000326 sec +105: Rendering DRR 4 +105: I/O time: 0.000490 sec +105: Rendering DRR 5 +105: I/O time: 0.000355 sec +105: Rendering DRR 6 +105: I/O time: 0.000332 sec +105: Rendering DRR 7 +105: I/O time: 0.000384 sec +105: Rendering DRR 8 +105: I/O time: 0.000367 sec +105: Rendering DRR 9 +105: I/O time: 0.000367 sec +105: Rendering DRR 10 +105: I/O time: 0.000444 sec +105: Rendering DRR 11 +105: I/O time: 0.008245 sec +105: Rendering DRR 12 +105: I/O time: 0.000420 sec +105: Rendering DRR 13 +105: I/O time: 0.000348 sec +105: Rendering DRR 14 +105: I/O time: 0.000416 sec +105: Rendering DRR 15 +105: I/O time: 0.000363 sec +105: Rendering DRR 16 +105: I/O time: 0.000364 sec +105: Rendering DRR 17 +105: I/O time: 0.025536 sec +105: Rendering DRR 18 +105: I/O time: 0.000359 sec +105: Rendering DRR 19 +105: I/O time: 0.000356 sec +105: Total time: 0.599745 secs +105: +105: STDERR: +105: Not an error + 68/578 Test #105: drr-c ................................. Passed 1.20 sec test 172 Start 172: plm-boundary-a 172: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;adaptive;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 172: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 172: Test timeout computed to be: 1500 -172: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -172: PARMS is boundary;--boundary-behavior;adaptive;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha -172: EXPECTED_ERRNO is -169: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -169: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd;--local-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd;--local-shift-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd;--local-blending-off -169: EXPECTED_ERRNO is -108: RETVAL: 0 -108: STDOUT: Reconstructing... -108: Processing image 0 -108: Processing image 1 -108: Processing image 2 -108: Processing image 3 -108: Processing image 4 -108: Processing image 5 -108: Processing image 6 -108: Processing image 7 -108: Processing image 8 -108: Processing image 9 -108: Processing image 10 -108: Processing image 11 -108: Processing image 12 -108: Processing image 13 -108: Processing image 14 -108: Processing image 15 -108: Processing image 16 -108: Processing image 17 -108: Processing image 18 -108: Processing image 19 -108: I/O time (total) = 0.00376844 -108: I/O time (per image) = 0.000188422 -108: Filter time = 0 -108: Filter time (per image) = 0 -108: Backprojection time = 1.29792 -108: Backprojection time (per image) = 0.0648962 -108: Writing output volume(s)... -108: done. -108: -108: -108: STDERR: -108: Not an error - 70/578 Test #108: fdk-cpu-a ............................. Passed 2.07 sec +139: RETVAL: 0 +139: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd +139: +139: STDERR: +139: Not an error + 69/578 Test #139: plm-add-vf-b .......................... Passed 0.98 sec test 175 Start 175: plm-boundary-b 175: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;zero-pad;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 175: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 175: Test timeout computed to be: 1500 +172: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +172: PARMS is boundary;--boundary-behavior;adaptive;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha +172: EXPECTED_ERRNO is +175: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +175: PARMS is boundary;--boundary-behavior;zero-pad;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha +175: EXPECTED_ERRNO is +148: RETVAL: 0 +148: STDOUT: Applying shift=100 and scale=1 ... done. +148: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd +148: Finished! +148: +148: STDERR: 145: RETVAL: 0 145: STDOUT: Applying piece-wise linear transform... 145: done. @@ -4947,100 +4964,162 @@ 145: 145: STDERR: 145: Not an error - 71/578 Test #145: plm-adjust-b .......................... Passed 0.96 sec +148: Not an error + 70/578 Test #145: plm-adjust-b .......................... Passed 0.70 sec test 178 Start 178: plm-boundary-c 178: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;edge-pad;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 178: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 178: Test timeout computed to be: 1500 -175: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -175: PARMS is boundary;--boundary-behavior;zero-pad;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha -175: EXPECTED_ERRNO is -178: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -178: PARMS is boundary;--boundary-behavior;edge-pad;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha -178: EXPECTED_ERRNO is -154: RETVAL: 0 -154: STDOUT: Applying shift=1000 and scale=2.5 ... done. -154: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd -154: Finished! -154: -154: STDERR: -154: Not an error - 72/578 Test #154: plm-adjust-e .......................... Passed 0.81 sec + 71/578 Test #148: plm-adjust-c .......................... Passed 0.68 sec test 181 Start 181: plm-boundary-d 181: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;adaptive;--boundary-type;interior-face;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 181: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 181: Test timeout computed to be: 1500 -148: RETVAL: 0 -148: STDOUT: Applying shift=100 and scale=1 ... done. -148: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd -148: Finished! -148: -148: STDERR: -148: Not an error - 73/578 Test #148: plm-adjust-c .......................... Passed 1.02 sec +178: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +178: PARMS is boundary;--boundary-behavior;edge-pad;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha +178: EXPECTED_ERRNO is +181: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +181: PARMS is boundary;--boundary-behavior;adaptive;--boundary-type;interior-face;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha +181: EXPECTED_ERRNO is +157: RETVAL: 0 +157: STDOUT: Performing histogram matching... +157: done. +157: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd +157: Finished! +157: +157: STDERR: +157: Not an error + 72/578 Test #157: plm-adjust-f .......................... Passed 0.69 sec test 184 Start 184: plm-boundary-e 184: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;edge-pad;--boundary-type;interior-face;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 184: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 184: Test timeout computed to be: 1500 -181: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -181: PARMS is boundary;--boundary-behavior;adaptive;--boundary-type;interior-face;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha -181: EXPECTED_ERRNO is -184: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -184: PARMS is boundary;--boundary-behavior;edge-pad;--boundary-type;interior-face;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha -184: EXPECTED_ERRNO is -151: RETVAL: 0 -151: STDOUT: Applying piece-wise linear transform... -151: done. -151: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd -151: Finished! -151: -151: STDERR: -151: Not an error - 74/578 Test #151: plm-adjust-d .......................... Passed 1.08 sec +340: RETVAL: 0 +340: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +340: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha +340: Launching registration worker thread +340: Inside registration worker thread +340: Doing registration stage +340: [1] xf_in->m_type = 0, xf_out->m_type = 0 +340: RESAMPLE 1 1: (1 1 1), (1 1 1) +340: RESAMPLE 1 1: (1 1 1), (1 1 1) +340: volume_calc_grad complete. +340: bspline_xform_initialize +340: rdims = (3,3,3) +340: vox_per_rgn = (15,15,15) +340: cdims = (6 6 6) +340: Algorithm flavor = c +340: Threading = 0 +340: >> Checking JH allocation +340: >> Performing JH allocation +340: BSPLINE PARMS +340: max_its = 10 +340: max_feval = 10 +340: BSPLINE XFORM HEADER +340: vox_per_rgn = 15 15 15 +340: roi_offset = 0 0 0 +340: roi_dim = 38 38 38 +340: img_dc = 1 0 0 0 1 0 0 0 1 +340: BST METRICS +340: MET 110100 MI 1.000000 +340: >> Performing JH initialization +340: Using alpha_0 (1.000000) +340: [ 0, 0] MI -0.3659457 NV 54872 GM -0.007 GN 0.00788 [ 0.117 s ] +340: CMIN 0.01 CAVG 0.01 CMAX 0.01 +340: [ 0, 1] MI -0.3699214 NV 54872 GM -0.056 GN 0.00867 [ 0.081 s ] +340: CMIN -0.21 CAVG 0.01 CMAX 0.30 +340: GR 0.50 NEW_A 1.00 ACCEPT? 1 +340: [ 1, 2] MI -0.3777946 NV 54872 GM -0.049 GN 0.00903 [ 0.071 s ] +340: CMIN -0.23 CAVG 0.02 CMAX 0.69 +340: GR 0.91 NEW_A 3.00 ACCEPT? 1 +340: [ 2, 3] MI -0.4137608 NV 54753 GM -0.063 GN 0.017 [ 0.085 s ] +340: CMIN -0.35 CAVG 0.05 CMAX 2.09 +340: GR 3.98 NEW_A 9.00 ACCEPT? 1 +340: [ 3, 4] MI -0.5521525 NV 53587 GM -0.081 GN 0.017 [ 0.175 s ] +340: CMIN -0.97 CAVG 0.10 CMAX 7.08 +340: GR 8.16 NEW_A 27.00 ACCEPT? 1 +340: [ 4, 5] MI -1.2166027 NV 49761 GM -0.031 GN 0.0276 [ 0.204 s ] +340: CMIN -2.22 CAVG 0.30 CMAX 20.76 +340: GR 38.97 NEW_A 81.00 ACCEPT? 1 +340: [ 5, 6] MI -0.4035923 NV 36457 GM -0.029 GN 0.0114 [ 0.155 s ] +340: CMIN -26.58 CAVG 0.44 CMAX 33.14 +340: GR -29.50 NEW_A 40.50 ACCEPT? 0 +340: [ 5, 7] MI -0.7946788 NV 43303 GM -0.068 GN 0.0215 [ 0.110 s ] +340: CMIN -14.21 CAVG 0.37 CMAX 26.12 +340: GR -15.31 NEW_A 20.25 ACCEPT? 0 +340: [ 5, 8] MI -1.1523657 NV 46825 GM -0.160 GN 0.031 [ 0.120 s ] +340: CMIN -8.02 CAVG 0.33 CMAX 23.44 +340: GR -2.33 NEW_A 10.12 ACCEPT? 0 +340: [ 5, 9] MI -1.3108922 NV 48385 GM -0.176 GN 0.0266 [ 0.130 s ] +340: CMIN -4.93 CAVG 0.31 CMAX 22.10 +340: GR 3.42 NEW_A 30.38 ACCEPT? 1 +340: [ 6, 10] MI -0.7927921 NV 46839 GM 0.149 GN 0.0234 [ 0.127 s ] +340: CMIN -2.23 CAVG 0.62 CMAX 17.80 +340: GR -19.50 NEW_A 15.19 ACCEPT? 0 +340: [2] xf_out->m_type = 9, xf_in->m_type = 0 +340: ** Registration worker thread finished. +340: Writing transformation ... +340: Warping... +340: Running: plm_warp_native +340: Converting input image... +340: Converting xform... +340: bspline_xform_initialize +340: rdims = (3,3,3) +340: vox_per_rgn = (15,15,15) +340: cdims = (6 6 6) +340: Creating output vf... +340: Creating output volume... +340: Running native warper... +340: bspline_warp complete. +340: Back convert to original type... +340: > Convert vf to itk +340: > Conversion complete. +340: plm_warp_native is complete. +340: Saving image... +340: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha +340: Saving vf... +340: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha +340: Load: 0.178044 +340: Run: 1.39979 +340: Save: 0.0820482 +340: Total: 1.65988 +340: Finished! +340: +340: STDERR: +340: Not an error + 73/578 Test #340: plm-bsp-mi-c-2 ........................ Passed 2.57 sec test 190 Start 190: plm-convert-dicom-b 190: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom;--metadata;0018,5100&equal&FFS" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 190: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 190: Test timeout computed to be: 1500 -163: RETVAL: 0 -163: STDOUT: Computing statistics for linear match... -163: Time = 0.021974 seconds -163: Adjusting image. shift = 0.158838; scale = 0.000442518 done. -163: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd -163: Finished! -163: -163: STDERR: -163: Not an error -190: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -190: PARMS is convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom;--metadata;0018,5100&equal&FFS -190: EXPECTED_ERRNO is - 75/578 Test #163: plm-adjust-h .......................... Passed 0.68 sec +184: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +184: PARMS is boundary;--boundary-behavior;edge-pad;--boundary-type;interior-face;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha +184: EXPECTED_ERRNO is +175: RETVAL: 0 +175: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd +175: +175: STDERR: +175: Not an error + 74/578 Test #175: plm-boundary-b ........................ Passed 0.47 sec test 199 Start 199: plm-convert-dicom-donut-a 199: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 199: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 199: Test timeout computed to be: 1500 -199: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -199: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd -199: EXPECTED_ERRNO is -178: RETVAL: 0 -178: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd -178: -178: STDERR: -178: Not an error 166: RETVAL: 0 166: STDOUT: Applying local intensity matching... -166: Time = 0.006810 seconds -166: Time = 0.007926 seconds -166: Time = 0.008130 seconds +166: Time = 0.031377 seconds +166: Time = 0.001666 seconds +166: Time = 0.012322 seconds 166: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd 166: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd 166: done. @@ -5048,275 +5127,210 @@ 166: Finished! 166: 166: STDERR: -166: Not an error - 76/578 Test #178: plm-boundary-c ........................ Passed 0.47 sec +151: RETVAL: 0 +151: STDOUT: Applying piece-wise linear transform... +151: done. +151: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd +151: Finished! +151: +151: STDERR: +190: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +190: PARMS is convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom;--metadata;0018,5100&equal&FFS +190: EXPECTED_ERRNO is +172: RETVAL: 0 +172: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd +172: +172: STDERR: +172: Not an error + 75/578 Test #172: plm-boundary-a ........................ Passed 0.54 sec test 202 Start 202: plm-convert-dicom-donut-b 202: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd;--xor-contours" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 202: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 202: Test timeout computed to be: 1500 - 77/578 Test #166: plm-adjust-i .......................... Passed 0.80 sec +166: Not an error + 76/578 Test #166: plm-adjust-i .......................... Passed 0.75 sec test 206 Start 206: plm-convert-cxt 206: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-cxt" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 206: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 206: Test timeout computed to be: 1500 -160: RETVAL: 0 -160: STDOUT: Computing statistics for linear match... -160: Adjusting image. shift = 0.289174; scale = 0.000314475 done. -160: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd -160: Finished! -160: -160: STDERR: -160: Not an error - 78/578 Test #160: plm-adjust-g .......................... Passed 0.89 sec +151: Not an error + 77/578 Test #151: plm-adjust-d .......................... Passed 1.07 sec test 210 Start 210: plm-convert-dose-scale 210: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dose-scale" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input-dose-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-dose-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha;--dose-scale;77.7" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 210: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 210: Test timeout computed to be: 1500 -202: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -202: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd;--xor-contours -202: EXPECTED_ERRNO is -172: RETVAL: 0 -172: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd -172: -172: STDERR: -172: Not an error - 79/578 Test #172: plm-boundary-a ........................ Passed 0.76 sec +154: RETVAL: 0 +154: STDOUT: Applying shift=1000 and scale=2.5 ... done. +154: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd +154: Finished! +154: +154: STDERR: +206: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +206: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt +206: EXPECTED_ERRNO is +154: Not an error +199: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +199: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd +199: EXPECTED_ERRNO is + 78/578 Test #154: plm-adjust-e .......................... Passed 0.93 sec test 213 Start 213: plm-crop-a 213: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha;--voxels;5 15 3 18 7 9" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 213: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 213: Test timeout computed to be: 1500 -206: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -206: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt -206: EXPECTED_ERRNO is +160: RETVAL: 0 +160: STDOUT: Computing statistics for linear match... +160: Adjusting image. shift = 0.289174; scale = 0.000314475 done. +160: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd +160: Finished! +160: +160: STDERR: +181: RETVAL: 0 +181: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd +181: +181: STDERR: +202: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +202: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd;--xor-contours +202: EXPECTED_ERRNO is 210: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 210: PARMS is convert;--input-dose-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-dose-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha;--dose-scale;77.7 210: EXPECTED_ERRNO is -169: RETVAL: 0 -169: STDOUT: Applying local intensity matching... -169: Time = 0.011464 seconds -169: Time = 0.003395 seconds -169: Time = 0.003846 seconds -169: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd -169: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd -169: done. -169: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd -169: Finished! -169: -169: STDERR: -169: Not an error - 80/578 Test #169: plm-adjust-j .......................... Passed 0.83 sec +160: Not an error + 79/578 Test #160: plm-adjust-g .......................... Passed 0.91 sec test 216 Start 216: plm-crop-b 216: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha;--coordinates;-15 10 3 18 -12 -7" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 216: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 216: Test timeout computed to be: 1500 -213: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -213: PARMS is crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha;--voxels;5 15 3 18 7 9 -213: EXPECTED_ERRNO is -216: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -216: PARMS is crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha;--coordinates;-15 10 3 18 -12 -7 -216: EXPECTED_ERRNO is -184: RETVAL: 0 -184: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd -184: -184: STDERR: -184: Not an error - 81/578 Test #184: plm-boundary-e ........................ Passed 0.54 sec +181: Not an error + 80/578 Test #181: plm-boundary-d ........................ Passed 0.47 sec test 219 Start 219: plm-crop-c 219: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha;--structure;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 219: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 219: Test timeout computed to be: 1500 -175: RETVAL: 0 -175: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd -175: -175: STDERR: -175: Not an error - 82/578 Test #175: plm-boundary-b ........................ Passed 0.75 sec +213: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +213: PARMS is crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha;--voxels;5 15 3 18 7 9 +213: EXPECTED_ERRNO is +216: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +216: PARMS is crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha;--coordinates;-15 10 3 18 -12 -7 +216: EXPECTED_ERRNO is +169: RETVAL: 0 +169: STDOUT: Applying local intensity matching... +169: Time = 0.009105 seconds +169: Time = 0.007642 seconds +169: Time = 0.007379 seconds +169: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd +169: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd +169: done. +169: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd +169: Finished! +169: +169: STDERR: +169: Not an error + 81/578 Test #169: plm-adjust-j .......................... Passed 0.75 sec test 256 Start 256: plm-fill-a 256: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-fill-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fill;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 256: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 256: Test timeout computed to be: 1500 -21: RETVAL: 0 -21: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha -21: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Body.mha -21: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Tumor.mha -21: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Lung.mha -21: Doing extraction -21: Keyholizing structure 0. -21: Keyholizing structure 1. -21: Keyholizing structure 2. -21: Write: DoseGridScaling = 0.000000 -21: -21: STDERR: -21: Not an error +178: RETVAL: 0 +178: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd +178: +178: STDERR: 219: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 219: PARMS is crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha;--structure;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha 219: EXPECTED_ERRNO is - 83/578 Test #21: lung-1 ................................ Passed 5.43 sec -test 193 - Start 193: plm-convert-dicom-c - -193: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -193: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -193: Test timeout computed to be: 1500 -256: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -256: PARMS is fill;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha -256: EXPECTED_ERRNO is -181: RETVAL: 0 -181: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd -181: -181: STDERR: -181: Not an error -193: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -193: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix -193: EXPECTED_ERRNO is - 84/578 Test #181: plm-boundary-d ........................ Passed 0.69 sec +108: RETVAL: 0 +108: STDOUT: Reconstructing... +108: Processing image 0 +108: Processing image 1 +108: Processing image 2 +108: Processing image 3 +108: Processing image 4 +108: Processing image 5 +108: Processing image 6 +108: Processing image 7 +108: Processing image 8 +108: Processing image 9 +108: Processing image 10 +108: Processing image 11 +108: Processing image 12 +108: Processing image 13 +108: Processing image 14 +108: Processing image 15 +108: Processing image 16 +108: Processing image 17 +108: Processing image 18 +108: Processing image 19 +108: I/O time (total) = 0.00297213 +108: I/O time (per image) = 0.000148606 +108: Filter time = 0 +108: Filter time (per image) = 0 +108: Backprojection time = 0.725759 +108: Backprojection time (per image) = 0.0362879 +108: Writing output volume(s)... +108: done. +108: +108: +108: STDERR: +108: Not an error +178: Not an error +163: RETVAL: 0 +163: STDOUT: Computing statistics for linear match... +163: Time = 0.006983 seconds +163: Adjusting image. shift = 0.158838; scale = 0.000442518 done. +163: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd +163: Finished! +163: +163: STDERR: + 82/578 Test #108: fdk-cpu-a ............................. Passed 1.60 sec test 259 Start 259: plm-mask-a 259: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-mask-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--mask-value;-1000" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 259: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 259: Test timeout computed to be: 1500 -157: RETVAL: 0 -157: STDOUT: Performing histogram matching... -157: done. -157: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd -157: Finished! -157: -157: STDERR: -157: Not an error - 85/578 Test #157: plm-adjust-f .......................... Passed 1.25 sec + 83/578 Test #178: plm-boundary-c ........................ Passed 0.57 sec test 262 Start 262: plm-gamma-a 262: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--compute-full-region;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 262: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 262: Test timeout computed to be: 1500 -259: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -259: PARMS is mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--mask-value;-1000 -259: EXPECTED_ERRNO is -262: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -262: PARMS is gamma;--compute-full-region;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha -262: EXPECTED_ERRNO is -216: RETVAL: 0 -216: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha -216: -216: STDERR: -216: Not an error - 86/578 Test #216: plm-crop-b ............................ Passed 0.39 sec +163: Not an error + 84/578 Test #163: plm-adjust-h .......................... Passed 0.98 sec test 265 Start 265: plm-gamma-b 265: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 265: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 265: Test timeout computed to be: 1500 -340: RETVAL: 0 -340: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -340: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha -340: Launching registration worker thread -340: Inside registration worker thread -340: Doing registration stage -340: [1] xf_in->m_type = 0, xf_out->m_type = 0 -340: RESAMPLE 1 1: (1 1 1), (1 1 1) -340: RESAMPLE 1 1: (1 1 1), (1 1 1) -340: volume_calc_grad complete. -340: bspline_xform_initialize -340: rdims = (3,3,3) -340: vox_per_rgn = (15,15,15) -340: cdims = (6 6 6) -340: Algorithm flavor = c -340: Threading = 0 -340: >> Checking JH allocation -340: >> Performing JH allocation -340: BSPLINE PARMS -340: max_its = 10 -340: max_feval = 10 -340: BSPLINE XFORM HEADER -340: vox_per_rgn = 15 15 15 -340: roi_offset = 0 0 0 -340: roi_dim = 38 38 38 -340: img_dc = 1 0 0 0 1 0 0 0 1 -340: BST METRICS -340: MET 110100 MI 1.000000 -340: >> Performing JH initialization -340: Using alpha_0 (1.000000) -340: [ 0, 0] MI -0.3659457 NV 54872 GM -0.007 GN 0.00788 [ 0.235 s ] -340: CMIN 0.01 CAVG 0.01 CMAX 0.01 -340: [ 0, 1] MI -0.3699214 NV 54872 GM -0.056 GN 0.00867 [ 0.188 s ] -340: CMIN -0.21 CAVG 0.01 CMAX 0.30 -340: GR 0.50 NEW_A 1.00 ACCEPT? 1 -340: [ 1, 2] MI -0.3777946 NV 54872 GM -0.049 GN 0.00903 [ 0.340 s ] -340: CMIN -0.23 CAVG 0.02 CMAX 0.69 -340: GR 0.91 NEW_A 3.00 ACCEPT? 1 -340: [ 2, 3] MI -0.4137608 NV 54753 GM -0.063 GN 0.017 [ 0.576 s ] -340: CMIN -0.35 CAVG 0.05 CMAX 2.09 -340: GR 3.98 NEW_A 9.00 ACCEPT? 1 -340: [ 3, 4] MI -0.5521525 NV 53587 GM -0.081 GN 0.017 [ 0.469 s ] -340: CMIN -0.97 CAVG 0.10 CMAX 7.08 -340: GR 8.16 NEW_A 27.00 ACCEPT? 1 -340: [ 4, 5] MI -1.2166027 NV 49761 GM -0.031 GN 0.0276 [ 0.224 s ] -340: CMIN -2.22 CAVG 0.30 CMAX 20.76 -340: GR 38.97 NEW_A 81.00 ACCEPT? 1 -340: [ 5, 6] MI -0.4035923 NV 36457 GM -0.029 GN 0.0114 [ 0.201 s ] -340: CMIN -26.58 CAVG 0.44 CMAX 33.14 -340: GR -29.50 NEW_A 40.50 ACCEPT? 0 -340: [ 5, 7] MI -0.7946788 NV 43303 GM -0.068 GN 0.0215 [ 0.185 s ] -340: CMIN -14.21 CAVG 0.37 CMAX 26.12 -340: GR -15.31 NEW_A 20.25 ACCEPT? 0 -340: [ 5, 8] MI -1.1523657 NV 46825 GM -0.160 GN 0.031 [ 0.174 s ] -340: CMIN -8.02 CAVG 0.33 CMAX 23.44 -340: GR -2.33 NEW_A 10.12 ACCEPT? 0 -340: [ 5, 9] MI -1.3108922 NV 48385 GM -0.176 GN 0.0266 [ 0.191 s ] -340: CMIN -4.93 CAVG 0.31 CMAX 22.10 -340: GR 3.42 NEW_A 30.38 ACCEPT? 1 -340: [ 6, 10] MI -0.7927921 NV 46839 GM 0.149 GN 0.0234 [ 0.172 s ] -340: CMIN -2.23 CAVG 0.62 CMAX 17.80 -340: GR -19.50 NEW_A 15.19 ACCEPT? 0 -340: [2] xf_out->m_type = 9, xf_in->m_type = 0 -340: ** Registration worker thread finished. -340: Writing transformation ... -340: Warping... -340: Running: plm_warp_native -340: Converting input image... -340: Converting xform... -340: bspline_xform_initialize -340: rdims = (3,3,3) -340: vox_per_rgn = (15,15,15) -340: cdims = (6 6 6) -340: Creating output vf... -340: Creating output volume... -340: Running native warper... -340: bspline_warp complete. -340: Back convert to original type... -340: > Convert vf to itk -340: > Conversion complete. -340: plm_warp_native is complete. -340: Saving image... -340: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha -340: Saving vf... -340: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha -340: Load: 0.228035 -340: Run: 2.97481 -340: Save: 0.0740991 -340: Total: 3.27695 -340: Finished! -340: -340: STDERR: -340: Not an error - 87/578 Test #340: plm-bsp-mi-c-2 ........................ Passed 4.30 sec +184: RETVAL: 0 +184: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd +184: +184: STDERR: +184: Not an error +256: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +256: PARMS is fill;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha +256: EXPECTED_ERRNO is +262: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +262: PARMS is gamma;--compute-full-region;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha +262: EXPECTED_ERRNO is +259: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +259: PARMS is mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--mask-value;-1000 +259: EXPECTED_ERRNO is + 85/578 Test #184: plm-boundary-e ........................ Passed 0.39 sec test 272 Start 272: plm-maximum-a @@ -5326,6 +5340,50 @@ 265: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 265: PARMS is gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha 265: EXPECTED_ERRNO is +202: RETVAL: 0 +202: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379347.1717523405.209716RTDOSE +202: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379347.1717523405.209717RTSTRUCT +202: Found DCM_ReferencedFrameOfReferenceSequence! +202: Found DCM_RTReferencedStudySequence! +202: Trying to load rt dose. +202: Load: DoseGridScaling = 0.000000 +202: RTDOSE: dim = 38 38 38 +202: ipp = -25.000000 -25.000000 -25.000000 +202: spc = 1.315790 1.315790 1.315790 +202: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +202: Bits_alloc: 32 +202: Bits_stored: 32 +202: High_bit: 31 +202: Pixel_rep: 0 +202: rc = 1, length = 109744, npix = 54872 +202: Trying to load rt structure set. +202: Adding structure (1), Foreground +202: Structure 1 has color 255\0\0 +202: Setting PIH from RDD +202: PIH is: +202: Origin = -25.0000 -25.0000 -25.0000 +202: Size = 38 38 38 +202: Spacing = 1.3158 1.3158 1.3158 +202: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +202: Rt_study_warp: Convert ss_img to cxt. +202: Rt_study_warp: Apply dicom_dir. +202: Rt_study_warp: Set geometry from PIH. +202: Rt_study_warp: Set rasterization geometry. +202: rast_dim = 512 512 14 +202: rast_offset = -10.3618 -10.3618 -9.21053 +202: rast_spacing = 0.0404759 0.0404759 1.31579 +202: Rt_study_warp: warp and save ss. +202: Warp_and_save_ss: seg->rasterize +202: Rasterizing... +202: Converting... +202: Finished rasterization. +202: Warp_and_save_ss: save_ss_img +202: save_ss_img: save_ss_image +202: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd +202: Finished! +202: +202: STDERR: +202: Not an error 210: RETVAL: 0 210: STDOUT: Setting PIH from DOSE 210: PIH is: @@ -5339,17 +5397,64 @@ 210: Finished! 210: 210: STDERR: -210: Not an error - 88/578 Test #210: plm-convert-dose-scale ................ Passed 0.60 sec + 86/578 Test #202: plm-convert-dicom-donut-b ............. Passed 0.38 sec test 275 Start 275: plm-multiply-a 275: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=multiply;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 275: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 275: Test timeout computed to be: 1500 +210: Not an error + 87/578 Test #210: plm-convert-dose-scale ................ Passed 0.35 sec +test 278 + Start 278: plm-multiply-vf-a + +278: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=multiply;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +278: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +278: Test timeout computed to be: 1500 +206: RETVAL: 0 +206: STDOUT: CT_SERIES_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.3380142.1717523406.547670| +206: CT_STUDY_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.3380142.1717523406.547686| +206: CT_FRAME_OF_REFERENCE_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.3380142.1717523406.547687| +206: PATIENT_NAME|ANONYMOUS| +206: PATIENT_ID|PL992063409743413| +206: PATIENT_SEX|O| +206: STUDY_ID|10001| +206: OFFSET|-55.2632 -55.2632 -46.0526| +206: DIMENSION|512 512 7| +206: SPACING|0.215872 0.215872 13.1579| +206: ROI_NAMES|| +206: Starting structure parsing +206: Starting contour parsing +206: Setting PIH from structure set spacing +206: PIH is: +206: Origin = -55.2632 -55.2632 -46.0526 +206: Size = 512 512 7 +206: Spacing = 0.2159 0.2159 13.1579 +206: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +206: Rt_study_warp: Convert ss_img to cxt. +206: Rt_study_warp: Apply dicom_dir. +206: Rt_study_warp: Set geometry from PIH. +206: Rt_study_warp: Set rasterization geometry. +206: rast_dim = 512 512 7 +206: rast_offset = -55.2632 -55.2632 -46.0526 +206: rast_spacing = 0.215872 0.215872 13.1579 +206: Rt_study_warp: warp and save ss. +206: Warp_and_save_ss: seg->rasterize +206: Rasterizing... +206: Converting... +206: Finished rasterization. +206: Warp_and_save_ss: save_ss_img +206: save_ss_img: save_ss_image +206: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha +206: save_ss_img: save_ss_list +206: Done. +206: Finished! +206: +206: STDERR: 199: RETVAL: 0 -199: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542157.1683112257.255988RTDOSE -199: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542157.1683112257.255989RTSTRUCT +199: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379347.1717523405.209716RTDOSE +199: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379347.1717523405.209717RTSTRUCT 199: Found DCM_ReferencedFrameOfReferenceSequence! 199: Found DCM_RTReferencedStudySequence! 199: Trying to load rt dose. @@ -5391,19 +5496,24 @@ 199: 199: STDERR: 199: Not an error - 89/578 Test #199: plm-convert-dicom-donut-a ............. Passed 0.82 sec -test 278 - Start 278: plm-multiply-vf-a +206: Not an error + 88/578 Test #199: plm-convert-dicom-donut-a ............. Passed 0.48 sec +test 282 + Start 282: plm-reg-align-center -278: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=multiply;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -278: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -278: Test timeout computed to be: 1500 -272: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -272: PARMS is maximum;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -272: EXPECTED_ERRNO is +282: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-align-center" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +282: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +282: Test timeout computed to be: 1500 + 89/578 Test #206: plm-convert-cxt ....................... Passed 0.44 sec +test 288 + Start 288: plm-reg-itk-rigid-a + +288: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +288: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +288: Test timeout computed to be: 1500 190: RETVAL: 0 -190: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542141.1683112258.256388RTDOSE -190: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542141.1683112258.256389RTSTRUCT +190: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379328.1717523405.358729RTDOSE +190: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379328.1717523405.358730RTSTRUCT 190: Found DCM_ReferencedFrameOfReferenceSequence! 190: Found DCM_RTReferencedStudySequence! 190: Trying to load rt dose. @@ -5442,197 +5552,113 @@ 190: 190: STDERR: 190: Not an error - 90/578 Test #190: plm-convert-dicom-b ................... Passed 0.91 sec -test 282 - Start 282: plm-reg-align-center - -282: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-align-center" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -282: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -282: Test timeout computed to be: 1500 -202: RETVAL: 0 -202: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542157.1683112257.255988RTDOSE -202: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542157.1683112257.255989RTSTRUCT -202: Found DCM_ReferencedFrameOfReferenceSequence! -202: Found DCM_RTReferencedStudySequence! -202: Trying to load rt dose. -202: Load: DoseGridScaling = 0.000000 -202: RTDOSE: dim = 38 38 38 -202: ipp = -25.000000 -25.000000 -25.000000 -202: spc = 1.315790 1.315790 1.315790 -202: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -202: Bits_alloc: 32 -202: Bits_stored: 32 -202: High_bit: 31 -202: Pixel_rep: 0 -202: rc = 1, length = 109744, npix = 54872 -202: Trying to load rt structure set. -202: Adding structure (1), Foreground -202: Structure 1 has color 255\0\0 -202: Setting PIH from RDD -202: PIH is: -202: Origin = -25.0000 -25.0000 -25.0000 -202: Size = 38 38 38 -202: Spacing = 1.3158 1.3158 1.3158 -202: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -202: Rt_study_warp: Convert ss_img to cxt. -202: Rt_study_warp: Apply dicom_dir. -202: Rt_study_warp: Set geometry from PIH. -202: Rt_study_warp: Set rasterization geometry. -202: rast_dim = 512 512 14 -202: rast_offset = -10.3618 -10.3618 -9.21053 -202: rast_spacing = 0.0404759 0.0404759 1.31579 -202: Rt_study_warp: warp and save ss. -202: Warp_and_save_ss: seg->rasterize -202: Rasterizing... -202: Converting... -202: Finished rasterization. -202: Warp_and_save_ss: save_ss_img -202: save_ss_img: save_ss_image -202: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd -202: Finished! -202: -202: STDERR: -202: Not an error - 91/578 Test #202: plm-convert-dicom-donut-b ............. Passed 0.73 sec -test 288 - Start 288: plm-reg-itk-rigid-a - -288: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -288: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -288: Test timeout computed to be: 1500 -278: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -278: PARMS is multiply;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha -278: EXPECTED_ERRNO is 275: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 275: PARMS is multiply;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 275: EXPECTED_ERRNO is -282: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -282: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center.txt -282: EXPECTED_ERRNO is -288: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -288: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt -288: EXPECTED_ERRNO is -206: RETVAL: 0 -206: STDOUT: CT_SERIES_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.3542969.1683112259.231955| -206: CT_STUDY_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.3542969.1683112259.231971| -206: CT_FRAME_OF_REFERENCE_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.3542969.1683112259.231972| -206: PATIENT_NAME|ANONYMOUS| -206: PATIENT_ID|PL616837151897465| -206: PATIENT_SEX|O| -206: STUDY_ID|10001| -206: OFFSET|-55.2632 -55.2632 -46.0526| -206: DIMENSION|512 512 7| -206: SPACING|0.215872 0.215872 13.1579| -206: ROI_NAMES|| -206: Starting structure parsing -206: Starting contour parsing -206: Setting PIH from structure set spacing -206: PIH is: -206: Origin = -55.2632 -55.2632 -46.0526 -206: Size = 512 512 7 -206: Spacing = 0.2159 0.2159 13.1579 -206: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -206: Rt_study_warp: Convert ss_img to cxt. -206: Rt_study_warp: Apply dicom_dir. -206: Rt_study_warp: Set geometry from PIH. -206: Rt_study_warp: Set rasterization geometry. -206: rast_dim = 512 512 7 -206: rast_offset = -55.2632 -55.2632 -46.0526 -206: rast_spacing = 0.215872 0.215872 13.1579 -206: Rt_study_warp: warp and save ss. -206: Warp_and_save_ss: seg->rasterize -206: Rasterizing... -206: Converting... -206: Finished rasterization. -206: Warp_and_save_ss: save_ss_img -206: save_ss_img: save_ss_image -206: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha -206: save_ss_img: save_ss_list -206: Done. -206: Finished! -206: -206: STDERR: -206: Not an error - 92/578 Test #206: plm-convert-cxt ....................... Passed 0.82 sec + 90/578 Test #190: plm-convert-dicom-b ................... Passed 0.55 sec test 293 Start 293: plm-reg-itk-similarity 293: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 293: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 293: Test timeout computed to be: 1500 -219: RETVAL: 0 -219: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha -219: -219: STDERR: -219: Not an error - 93/578 Test #219: plm-crop-c ............................ Passed 0.66 sec +216: RETVAL: 0 +216: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha +216: +216: STDERR: +213: RETVAL: 0 +213: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha +213: +213: STDERR: +213: Not an error +216: Not an error + 91/578 Test #213: plm-crop-a ............................ Passed 0.41 sec test 298 Start 298: plm-reg-itk-bspline 298: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 298: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 298: Test timeout computed to be: 1500 -22: RETVAL: 0 -22: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha -22: Doing extraction -22: Keyholizing structure 0. -22: Keyholizing structure 1. -22: Keyholizing structure 2. -22: Write: DoseGridScaling = 0.000000 -22: -22: STDERR: -22: Not an error -293: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -293: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity.txt -293: EXPECTED_ERRNO is - 94/578 Test #22: lung-2 ................................ Passed 4.42 sec +272: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +272: PARMS is maximum;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +272: EXPECTED_ERRNO is + 92/578 Test #216: plm-crop-b ............................ Passed 0.42 sec test 301 Start 301: plm-reg-itk-demons 301: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 301: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 301: Test timeout computed to be: 1500 +282: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +282: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center.txt +282: EXPECTED_ERRNO is +278: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +278: PARMS is multiply;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha +278: EXPECTED_ERRNO is +293: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +293: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity.txt +293: EXPECTED_ERRNO is 298: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 298: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline.txt 298: EXPECTED_ERRNO is -213: RETVAL: 0 -213: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha -213: -213: STDERR: -213: Not an error 301: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 301: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.txt 301: EXPECTED_ERRNO is - 95/578 Test #213: plm-crop-a ............................ Passed 0.88 sec +288: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +288: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt +288: EXPECTED_ERRNO is +219: RETVAL: 0 +219: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha +219: +219: STDERR: +219: Not an error + 93/578 Test #219: plm-crop-c ............................ Passed 0.52 sec test 311 Start 311: plm-bsp-mse-c 311: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 311: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 311: Test timeout computed to be: 1500 -259: RETVAL: 0 -259: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha -259: Finished! -259: -259: STDERR: -259: Not an error - 96/578 Test #259: plm-mask-a ............................ Passed 0.70 sec +256: RETVAL: 0 +256: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha +256: Finished! +256: +256: STDERR: +256: Not an error + 94/578 Test #256: plm-fill-a ............................ Passed 0.50 sec test 314 Start 314: plm-bsp-mse-g 314: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 314: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 314: Test timeout computed to be: 1500 +262: RETVAL: 0 +262: STDOUT: Gamma dose max is 10.000000 +262: Time = 0.002845 seconds +262: Gamma calculation is under progress... +262: analysis threshold = 1.00 Gy +262: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha +262: Pass rate = 100.000000 % +262: +262: STDERR: +262: Not an error 311: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 311: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c.txt 311: EXPECTED_ERRNO is -256: RETVAL: 0 -256: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha -256: Finished! -256: -256: STDERR: -256: Not an error - 97/578 Test #256: plm-fill-a ............................ Passed 0.87 sec +21: RETVAL: 0 +21: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha +21: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Body.mha +21: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Tumor.mha +21: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Lung.mha +21: Doing extraction +21: Keyholizing structure 0. +21: Keyholizing structure 1. +21: Keyholizing structure 2. +21: Write: DoseGridScaling = 0.000000 +21: +21: STDERR: +21: Not an error + 95/578 Test #262: plm-gamma-a ........................... Passed 0.51 sec test 320 Start 320: plm-bsp-mse-i @@ -5642,48 +5668,97 @@ 314: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 314: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g.txt 314: EXPECTED_ERRNO is -275: RETVAL: 0 -275: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd -275: -275: STDERR: -275: Not an error - 98/578 Test #275: plm-multiply-a ........................ Passed 0.50 sec + 96/578 Test #21: lung-1 ................................ Passed 4.22 sec +test 193 + Start 193: plm-convert-dicom-c + +193: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +193: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +193: Test timeout computed to be: 1500 +265: RETVAL: 0 +265: STDOUT: Gamma dose max is 10.000000 +265: Time = 0.006915 seconds +265: Gamma calculation is under progress... +265: analysis threshold = 1.00 Gy +265: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha +265: Pass rate = 0.000000 % +265: +265: STDERR: +259: RETVAL: 0 +259: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha +259: Finished! +259: +259: STDERR: +259: Not an error +265: Not an error +320: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +320: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i.txt +320: EXPECTED_ERRNO is + 97/578 Test #259: plm-mask-a ............................ Passed 0.58 sec test 323 Start 323: plm-bsp-mse-k 323: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-k" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 323: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 323: Test timeout computed to be: 1500 -320: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -320: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i.txt -320: EXPECTED_ERRNO is -323: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -323: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt -323: EXPECTED_ERRNO is -272: RETVAL: 0 -272: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd -272: -272: STDERR: -272: Not an error - 99/578 Test #272: plm-maximum-a ......................... Passed 0.70 sec + 98/578 Test #265: plm-gamma-b ........................... Passed 0.57 sec test 326 Start 326: plm-bsp-mse-l 326: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-l" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 326: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 326: Test timeout computed to be: 1500 +193: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +193: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix +193: EXPECTED_ERRNO is +323: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +323: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt +323: EXPECTED_ERRNO is +326: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +326: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt +326: EXPECTED_ERRNO is 278: RETVAL: 0 278: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd 278: 278: STDERR: 278: Not an error -100/578 Test #278: plm-multiply-vf-a ..................... Passed 0.65 sec + 99/578 Test #278: plm-multiply-vf-a ..................... Passed 0.51 sec test 337 Start 337: plm-bsp-mi-c 337: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 337: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 337: Test timeout computed to be: 1500 +272: RETVAL: 0 +272: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd +272: +272: STDERR: +272: Not an error +337: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +337: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt +337: EXPECTED_ERRNO is +275: RETVAL: 0 +275: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd +275: +275: STDERR: +275: Not an error +100/578 Test #272: plm-maximum-a ......................... Passed 0.72 sec +test 343 + Start 343: plm-bsp-mi-k + +343: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +343: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +343: Test timeout computed to be: 1500 +101/578 Test #275: plm-multiply-a ........................ Passed 0.59 sec +test 346 + Start 346: plm-bsp-gm-k + +346: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +346: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +346: Test timeout computed to be: 1500 +343: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +343: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt +343: EXPECTED_ERRNO is 282: RETVAL: 0 282: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 282: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha @@ -5700,58 +5775,15 @@ 282: plm_warp_itk: warping... 282: Saving image... 282: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha -282: Load: 0.0766859 -282: Run: 0.000943184 -282: Save: 0.0241349 -282: Total: 0.101764 +282: Load: 0.0572588 +282: Run: 0.0288341 +282: Save: 0.015161 +282: Total: 0.101254 282: Finished! 282: 282: STDERR: 282: Not an error -326: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -326: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt -326: EXPECTED_ERRNO is -101/578 Test #282: plm-reg-align-center .................. Passed 0.66 sec -test 343 - Start 343: plm-bsp-mi-k - -343: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -343: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -343: Test timeout computed to be: 1500 -337: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -337: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt -337: EXPECTED_ERRNO is -343: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -343: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt -343: EXPECTED_ERRNO is -265: RETVAL: 0 -265: STDOUT: Gamma dose max is 10.000000 -265: Time = 0.007956 seconds -265: Gamma calculation is under progress... -265: analysis threshold = 1.00 Gy -265: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha -265: Pass rate = 0.000000 % -265: -265: STDERR: -265: Not an error -102/578 Test #265: plm-gamma-b ........................... Passed 0.95 sec -test 346 - Start 346: plm-bsp-gm-k - -346: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -346: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -346: Test timeout computed to be: 1500 -262: RETVAL: 0 -262: STDOUT: Gamma dose max is 10.000000 -262: Time = 0.015013 seconds -262: Gamma calculation is under progress... -262: analysis threshold = 1.00 Gy -262: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha -262: Pass rate = 100.000000 % -262: -262: STDERR: -262: Not an error -103/578 Test #262: plm-gamma-a ........................... Passed 1.15 sec +102/578 Test #282: plm-reg-align-center .................. Passed 0.61 sec test 351 Start 351: plm-bsp-openmp @@ -5764,66 +5796,47 @@ 351: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 351: PARMS is /build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-openmp.txt 351: EXPECTED_ERRNO is -193: RETVAL: 0 -193: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542495.1683112262.192435RTDOSE -193: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542495.1683112262.192436RTSTRUCT -193: Found DCM_ReferencedFrameOfReferenceSequence! -193: Found DCM_RTReferencedStudySequence! -193: Trying to load rt dose. -193: Load: DoseGridScaling = 0.000000 -193: RTDOSE: dim = 100 100 100 -193: ipp = -247.500000 -247.500000 -247.500000 -193: spc = 5.000000 5.000000 5.000000 -193: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -193: Bits_alloc: 32 -193: Bits_stored: 32 -193: High_bit: 31 -193: Pixel_rep: 0 -193: rc = 1, length = 2000000, npix = 1000000 -193: Trying to load rt structure set. -193: Adding structure (1), Body -193: Adding structure (2), Tumor -193: Adding structure (3), Lung -193: Structure 1 has color 255\0\0 -193: Structure 2 has color 255\255\0 -193: Structure 3 has color 255\0\255 -193: Setting PIH from RDD -193: PIH is: -193: Origin = -247.5000 -247.5000 -247.5000 -193: Size = 100 100 100 -193: Spacing = 5.0000 5.0000 5.0000 -193: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -193: Rt_study_warp: Convert ss_img to cxt. -193: Rt_study_warp: Apply dicom_dir. -193: Rt_study_warp: Set geometry from PIH. -193: Rt_study_warp: Set rasterization geometry. -193: rast_dim = 512 512 99 -193: rast_offset = -157.5 -157.5 -247.5 -193: rast_spacing = 0.615234 0.615234 5 -193: Rt_study_warp: warp and save ss. -193: Warp_and_save_ss: seg->rasterize -193: Rasterizing... -193: Converting... -193: Finished rasterization. -193: Warp_and_save_ss: save_ss_img -193: save_ss_img: save_prefix -193: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Body.mha -193: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha -193: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Lung.mha -193: Finished! -193: -193: STDERR: -193: Not an error -104/578 Test #193: plm-convert-dicom-c ................... Passed 1.35 sec +301: RETVAL: 0 +301: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +301: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +301: Launching registration worker thread +301: Inside registration worker thread +301: Doing registration stage +301: [1] xf_in->m_type = 0, xf_out->m_type = 0 +301: Ready to start registration. +301: MSE [ 0] 18945.891 [ 0.074 secs] +301: MSE [ 1] 9752.760 [ 0.071 secs] +301: MSE [ 2] 3751.365 [ 0.056 secs] +301: MSE [ 3] 960.721 [ 0.079 secs] +301: MSE [ 4] 204.827 [ 0.064 secs] +301: Done with registration. Writing output... +301: Deformation stats (out) +301: VF_MAX = 97.6986 VF_AVG = 31.9237 +301: [2] xf_out->m_type = 8, xf_in->m_type = 0 +301: ** Registration worker thread finished. +301: Warping... +301: plm_warp_itk: xform_to_itk_vf +301: plm_warp_itk: convert_to_itk +301: plm_warp_itk: warping... +301: Saving image... +301: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha +301: Saving vf... +301: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-vf.mha +301: Load: 0.0585811 +301: Run: 0.345911 +301: Save: 0.0252819 +301: Total: 0.429774 +301: Finished! +301: +301: STDERR: +301: Not an error +103/578 Test #301: plm-reg-itk-demons .................... Passed 0.79 sec test 358 Start 358: plm-bsp-ushort 358: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-ushort" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-ushort.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 358: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 358: Test timeout computed to be: 1500 -358: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -358: PARMS is /build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-ushort.txt -358: EXPECTED_ERRNO is 288: RETVAL: 0 288: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 288: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha @@ -5850,17 +5863,17 @@ 288: Initial Parameters = [0, 0, 0, 0, 0, 0] 288: Starting ITK registration 288: StartEvent: [0, 0, 0, 0, 0, 0] -288: MSE [ 0, 0,10.00] 1339.481 [-4.036869646827599e-20, 8.106231711501361e-8, -8.106231711271498e-8, 9.999999999999996, -1.096129311626221e-14, -1.0957496630802156e-14] +288: MSE [ 0, 0,10.00] 1339.481 [-8.83142881316728e-20, 8.106231711082574e-8, -8.10623171142522e-8, 9.999999999999996, -1.0985752933188858e-14, -1.0981291411759381e-14] 288: :: [0, 0, 0, 0, 0, 0] 288: * -288: MSE [ 1, 1,10.00] 368.982 [4.13742126455135e-18, 1.6278511951960235e-7, -1.627851205579493e-7, 19.999999999999915, 8.969852837689337e-7, 8.969852835505952e-7] -970.50 -288: :: [-4.036869646827599e-20, 8.106231711501361e-8, -8.106231711271498e-8, 9.999999999999996, -1.096129311626221e-14, -1.0957496630802156e-14] +288: MSE [ 1, 1,10.00] 368.982 [3.806948117319788e-18, 1.6278511950376418e-7, -1.627851205541064e-7, 19.999999999999915, 8.969852837431283e-7, 8.969852833613136e-7] -970.50 +288: :: [-8.83142881316728e-20, 8.106231711082574e-8, -8.10623171142522e-8, 9.999999999999996, -1.0985752933188858e-14, -1.0981291411759381e-14] 288: * -288: MSE [ 2, 2, 5.00] 181.733 [-1.1503422157823281e-17, 5.896377564846332e-7, -5.896377771581046e-7, 15.000000000001307, 0.0000033932258749863136, 0.0000033932258256155003] -187.25 -288: :: [4.13742126455135e-18, 1.6278511951960235e-7, -1.627851205579493e-7, 19.999999999999915, 8.969852837689337e-7, 8.969852835505952e-7] +288: MSE [ 2, 2, 5.00] 181.733 [-2.4394789939533113e-17, 5.896377564961179e-7, -5.896377772888847e-7, 15.000000000001307, 0.0000033932258785701527, 0.000003393225829126095] -187.25 +288: :: [3.806948117319788e-18, 1.6278511950376418e-7, -1.627851205541064e-7, 19.999999999999915, 8.969852837431283e-7, 8.969852833613136e-7] 288: * -288: MSE [ 3, 3, 2.50] 183.524 [-9.197057714634955e-18, 8.131742571415607e-7, -8.131742894725585e-7, 17.499999999998433, 0.000006036537002259964, 0.000006036536832817248] 1.79 (tol) -288: EndEvent: [-9.197057714634955e-18, 8.131742571415607e-7, -8.131742894725585e-7, 17.499999999998433, 0.000006036537002259964, 0.000006036536832817248] +288: MSE [ 3, 3, 2.50] 183.524 [-3.172738995121846e-17, 8.131742571399627e-7, -8.131742896355897e-7, 17.499999999998433, 0.000006036537005084533, 0.0000060365368348658686] 1.79 (tol) +288: EndEvent: [-3.172738995121846e-17, 8.131742571399627e-7, -8.131742896355897e-7, 17.499999999998433, 0.000006036537005084533, 0.0000060365368348658686] 288: VersorRigid3DTransformOptimizer: Maximum number of iterations (1) exceeded. 288: ITK registration complete 288: [2] xf_out->m_type = 2, xf_in->m_type = 0 @@ -5888,17 +5901,17 @@ 288: 1 0 0 288: 0 1 0 288: 0 0 1 -288: Initial Parameters = [4.13742126455135e-18, 1.6278511951960235e-7, -1.627851205579493e-7, 19.999999999999915, 8.969852837689337e-7, 8.969852835505952e-7] +288: Initial Parameters = [3.806948117319788e-18, 1.6278511950376418e-7, -1.627851205541064e-7, 19.999999999999915, 8.969852837431283e-7, 8.969852833613136e-7] 288: Starting ITK registration -288: StartEvent: [4.13742126455135e-18, 1.6278511951960235e-7, -1.627851205579493e-7, 19.999999999999915, 8.969852837689337e-7, 8.969852835505952e-7] -288: MSE [ 0, 0,10.00] 616.559 [-2.1716432245355239e-16, -0.000003330236049859761, 0.000003330235947647176, 10.000000000052827, -0.000021019174512756676, -0.000021019174447012113] -288: :: [4.13742126455135e-18, 1.6278511951960235e-7, -1.627851205579493e-7, 19.999999999999915, 8.969852837689337e-7, 8.969852835505952e-7] +288: StartEvent: [3.806948117319788e-18, 1.6278511950376418e-7, -1.627851205541064e-7, 19.999999999999915, 8.969852837431283e-7, 8.969852833613136e-7] +288: MSE [ 0, 0,10.00] 616.559 [7.913398746951725e-16, -0.0000033302360494413585, 0.0000033302359463408686, 10.000000000052827, -0.000021019174533123363, -0.000021019174444185825] +288: :: [3.806948117319788e-18, 1.6278511950376418e-7, -1.627851205541064e-7, 19.999999999999915, 8.969852837431283e-7, 8.969852833613136e-7] 288: * -288: MSE [ 1, 1, 5.00] 1335.870 [-9.189992927422128e-17, -0.0000019933576719170645, 0.000001993357641955915, 14.9999999999192, -0.000046728744956865106, -0.00004672874598978125] 719.31 -288: MSE [ 2, 2, 5.00] 909.428 [6.149160029432496e-17, -9.215023616933814e-7, 9.21502382250043e-7, 19.99999999966778, -0.000011337953197704317, -0.000011337953398788367] -426.44 -288: MSE [ 3, 3, 2.50] 616.561 [-5.071615320232948e-16, 0.000004240909186795595, -0.000004240909079678499, 17.500000002328246, 0.00006956053052638395, 0.00006956053212582534] -292.87 -288: MSE [ 4, 4, 1.25] 668.182 [-1.387908694328788e-16, 0.000003139906341357198, -0.0000031399063058399214, 18.75000000156098, 0.000038669894854095167, 0.000038669895747688614] 51.62 -288: EndEvent: [-1.387908694328788e-16, 0.000003139906341357198, -0.0000031399063058399214, 18.75000000156098, 0.000038669894854095167, 0.000038669895747688614] +288: MSE [ 1, 1, 5.00] 1335.870 [2.5721929847045974e-16, -0.0000019933576716453414, 0.0000019933576412331926, 14.9999999999192, -0.000046728744955830994, -0.00004672874598083169] 719.31 +288: MSE [ 2, 2, 5.00] 909.428 [-6.197578444887854e-17, -9.215023615043547e-7, 9.215023820108519e-7, 19.99999999966778, -0.00001133795319329789, -0.00001133795340055733] -426.44 +288: MSE [ 3, 3, 2.50] 616.561 [6.647054919167728e-16, 0.00000424090918590073, -0.0000042409090780940076, 17.500000002328246, 0.00006956053055609987, 0.00006956053218886358] -292.87 +288: MSE [ 4, 4, 1.25] 668.182 [2.498525952672229e-16, 0.0000031399063409463767, -0.0000031399063049056394, 18.75000000156098, 0.000038669894868935475, 0.00003866989578197982] 51.62 +288: EndEvent: [2.498525952672229e-16, 0.0000031399063409463767, -0.0000031399063049056394, 18.75000000156098, 0.000038669894868935475, 0.00003866989578197982] 288: VersorRigid3DTransformOptimizer: Maximum number of iterations (5) exceeded. 288: ITK registration complete 288: [2] xf_out->m_type = 2, xf_in->m_type = 2 @@ -5912,21 +5925,112 @@ 288: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha 288: Saving vf... 288: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-vf.mha -288: Load: 0.123868 -288: Run: 0.355797 -288: Save: 0.030606 -288: Total: 0.510271 +288: Load: 0.072998 +288: Run: 0.313899 +288: Save: 0.030025 +288: Total: 0.416922 288: Finished! 288: 288: STDERR: 288: Not an error -105/578 Test #288: plm-reg-itk-rigid-a ................... Passed 1.09 sec +104/578 Test #288: plm-reg-itk-rigid-a ................... Passed 0.86 sec test 361 Start 361: plm-bsp-double 361: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-double" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 361: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 361: Test timeout computed to be: 1500 +311: RETVAL: 0 +311: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +311: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +311: Launching registration worker thread +311: Inside registration worker thread +311: Doing registration stage +311: [1] xf_in->m_type = 0, xf_out->m_type = 0 +311: RESAMPLE 1 1: (2 2 2), (2 2 2) +311: RESAMPLE 1 1: (2 2 2), (2 2 2) +311: volume_calc_grad complete. +311: bspline_xform_initialize +311: rdims = (2,2,2) +311: vox_per_rgn = (11,11,11) +311: cdims = (5 5 5) +311: Algorithm flavor = c +311: Threading = 0 +311: >> Checking JH allocation +311: BSPLINE PARMS +311: max_its = 5 +311: max_feval = 5 +311: BSPLINE XFORM HEADER +311: vox_per_rgn = 11 11 11 +311: roi_offset = 0 0 0 +311: roi_dim = 19 19 19 +311: img_dc = 1 0 0 0 1 0 0 0 1 +311: BST METRICS +311: MET 110100 MSE 1.000000 +311: Setting nmax, mmax = 375 21 +311: >>> START +311: This problem is unconstrained. +311: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.011 s ] +311: CMIN 0.00 CAVG 0.00 CMAX 0.00 +311: LSD 0.00 +311: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.011 s ] +311: CMIN -0.07 CAVG 0.01 CMAX 0.68 +311: LSD 1.00 +311: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.003 s ] +311: CMIN -0.35 CAVG 0.05 CMAX 3.40 +311: LSD 5.00 +311: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.009 s ] +311: CMIN -1.48 CAVG 0.20 CMAX 14.26 +311: LSD 21.00 +311: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.012 s ] +311: CMIN -1.74 CAVG 0.44 CMAX 32.50 +311: LSD 27.95 +311: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.007 s ] +311: CMIN -1.73 CAVG 0.34 CMAX 23.99 +311: LSD 13.11 +311: [2] xf_out->m_type = 9, xf_in->m_type = 0 +311: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +311: bspline_xform_initialize +311: rdims = (2,2,2) +311: vox_per_rgn = (22,22,22) +311: cdims = (5 5 5) +311: ** Registration worker thread finished. +311: Writing transformation ... +311: Warping... +311: Running: plm_warp_native +311: Converting input image... +311: Converting xform... +311: bspline_xform_initialize +311: rdims = (2,2,2) +311: vox_per_rgn = (22,22,22) +311: cdims = (5 5 5) +311: Creating output vf... +311: Creating output volume... +311: Running native warper... +311: bspline_warp complete. +311: Back convert to original type... +311: > Convert vf to itk +311: > Conversion complete. +311: plm_warp_native is complete. +311: Saving image... +311: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha +311: Saving vf... +311: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-vf.mha +311: Load: 0.081918 +311: Run: 0.0841269 +311: Save: 0.0850132 +311: Total: 0.251058 +311: Finished! +311: +311: STDERR: +311: Not an error +105/578 Test #311: plm-bsp-mse-c ......................... Passed 0.74 sec +test 365 + Start 365: plm-bsp-char-output + +365: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-char-output.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +365: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +365: Test timeout computed to be: 1500 293: RETVAL: 0 293: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha 293: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha @@ -6016,155 +6120,114 @@ 293: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-a-img.mha 293: Saving vf... 293: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-a-vf.mha -293: Load: 0.0661709 -293: Run: 0.365923 -293: Save: 0.046876 -293: Total: 0.47897 +293: Load: 0.081562 +293: Run: 0.305424 +293: Save: 0.0386961 +293: Total: 0.425682 293: Finished! 293: 293: STDERR: 293: Not an error -361: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -361: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt -361: EXPECTED_ERRNO is -311: RETVAL: 0 -311: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -311: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -311: Launching registration worker thread -311: Inside registration worker thread -311: Doing registration stage -311: [1] xf_in->m_type = 0, xf_out->m_type = 0 -311: RESAMPLE 1 1: (2 2 2), (2 2 2) -311: RESAMPLE 1 1: (2 2 2), (2 2 2) -311: volume_calc_grad complete. -311: bspline_xform_initialize -311: rdims = (2,2,2) -311: vox_per_rgn = (11,11,11) -311: cdims = (5 5 5) -311: Algorithm flavor = c -311: Threading = 0 -311: >> Checking JH allocation -311: BSPLINE PARMS -311: max_its = 5 -311: max_feval = 5 -311: BSPLINE XFORM HEADER -311: vox_per_rgn = 11 11 11 -311: roi_offset = 0 0 0 -311: roi_dim = 19 19 19 -311: img_dc = 1 0 0 0 1 0 0 0 1 -311: BST METRICS -311: MET 110100 MSE 1.000000 -311: Setting nmax, mmax = 375 21 -311: >>> START -311: This problem is unconstrained. -311: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.008 s ] -311: CMIN 0.00 CAVG 0.00 CMAX 0.00 -311: LSD 0.00 -311: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.004 s ] -311: CMIN -0.07 CAVG 0.01 CMAX 0.68 -311: LSD 1.00 -311: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.008 s ] -311: CMIN -0.35 CAVG 0.05 CMAX 3.40 -311: LSD 5.00 -311: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.012 s ] -311: CMIN -1.48 CAVG 0.20 CMAX 14.26 -311: LSD 21.00 -311: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.004 s ] -311: CMIN -1.74 CAVG 0.44 CMAX 32.50 -311: LSD 27.95 -311: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.012 s ] -311: CMIN -1.73 CAVG 0.34 CMAX 23.99 -311: LSD 13.11 -311: [2] xf_out->m_type = 9, xf_in->m_type = 0 -311: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -311: bspline_xform_initialize -311: rdims = (2,2,2) -311: vox_per_rgn = (22,22,22) -311: cdims = (5 5 5) -311: ** Registration worker thread finished. -311: Writing transformation ... -311: Warping... -311: Running: plm_warp_native -311: Converting input image... -311: Converting xform... -311: bspline_xform_initialize -311: rdims = (2,2,2) -311: vox_per_rgn = (22,22,22) -311: cdims = (5 5 5) -311: Creating output vf... -311: Creating output volume... -311: Running native warper... -311: bspline_warp complete. -311: Back convert to original type... -311: > Convert vf to itk -311: > Conversion complete. -311: plm_warp_native is complete. -311: Saving image... -311: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha -311: Saving vf... -311: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-vf.mha -311: Load: 0.100973 -311: Run: 0.106624 -311: Save: 0.0745211 -311: Total: 0.282118 -311: Finished! -311: -311: STDERR: -311: Not an error -106/578 Test #293: plm-reg-itk-similarity ................ Passed 1.04 sec -test 365 - Start 365: plm-bsp-char-output - -365: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-char-output.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -365: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -365: Test timeout computed to be: 1500 -107/578 Test #311: plm-bsp-mse-c ......................... Passed 0.94 sec +106/578 Test #293: plm-reg-itk-similarity ................ Passed 0.94 sec test 369 Start 369: plm-bsp-regularize-none 369: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 369: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 369: Test timeout computed to be: 1500 -369: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -369: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt -369: EXPECTED_ERRNO is +361: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +361: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt +361: EXPECTED_ERRNO is +358: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +358: PARMS is /build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-ushort.txt +358: EXPECTED_ERRNO is 365: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 365: PARMS is /build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-char-output.txt 365: EXPECTED_ERRNO is -301: RETVAL: 0 -301: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -301: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -301: Launching registration worker thread -301: Inside registration worker thread -301: Doing registration stage -301: [1] xf_in->m_type = 0, xf_out->m_type = 0 -301: Ready to start registration. -301: MSE [ 0] 18945.891 [ 0.103 secs] -301: MSE [ 1] 9752.760 [ 0.116 secs] -301: MSE [ 2] 3751.365 [ 0.088 secs] -301: MSE [ 3] 960.721 [ 0.112 secs] -301: MSE [ 4] 204.827 [ 0.148 secs] -301: Done with registration. Writing output... -301: Deformation stats (out) -301: VF_MAX = 97.6986 VF_AVG = 31.9237 -301: [2] xf_out->m_type = 8, xf_in->m_type = 0 -301: ** Registration worker thread finished. -301: Warping... -301: plm_warp_itk: xform_to_itk_vf -301: plm_warp_itk: convert_to_itk -301: plm_warp_itk: warping... -301: Saving image... -301: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha -301: Saving vf... -301: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-vf.mha -301: Load: 0.117797 -301: Run: 0.579591 -301: Save: 0.0143471 -301: Total: 0.711735 -301: Finished! -301: -301: STDERR: -301: Not an error +314: RETVAL: 0 +314: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +314: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +314: Launching registration worker thread +314: Inside registration worker thread +314: Doing registration stage +314: [1] xf_in->m_type = 0, xf_out->m_type = 0 +314: RESAMPLE 1 1: (2 2 2), (2 2 2) +314: RESAMPLE 1 1: (2 2 2), (2 2 2) +314: volume_calc_grad complete. +314: bspline_xform_initialize +314: rdims = (2,2,2) +314: vox_per_rgn = (11,11,11) +314: cdims = (5 5 5) +314: Algorithm flavor = g +314: Threading = 0 +314: >> Checking JH allocation +314: BSPLINE PARMS +314: max_its = 5 +314: max_feval = 5 +314: BSPLINE XFORM HEADER +314: vox_per_rgn = 11 11 11 +314: roi_offset = 0 0 0 +314: roi_dim = 19 19 19 +314: img_dc = 1 0 0 0 1 0 0 0 1 +314: BST METRICS +314: MET 110100 MSE 1.000000 +314: Setting nmax, mmax = 375 21 +314: >>> START +314: This problem is unconstrained. +314: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.055 s ] +314: CMIN 0.00 CAVG 0.00 CMAX 0.00 +314: LSD 0.00 +314: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.025 s ] +314: CMIN -0.07 CAVG 0.01 CMAX 0.68 +314: LSD 1.00 +314: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.023 s ] +314: CMIN -0.35 CAVG 0.05 CMAX 3.40 +314: LSD 5.00 +314: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.024 s ] +314: CMIN -1.48 CAVG 0.20 CMAX 14.26 +314: LSD 21.00 +314: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.024 s ] +314: CMIN -1.74 CAVG 0.44 CMAX 32.50 +314: LSD 27.95 +314: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.032 s ] +314: CMIN -1.73 CAVG 0.34 CMAX 23.99 +314: LSD 13.11 +314: [2] xf_out->m_type = 9, xf_in->m_type = 0 +314: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +314: bspline_xform_initialize +314: rdims = (2,2,2) +314: vox_per_rgn = (22,22,22) +314: cdims = (5 5 5) +314: ** Registration worker thread finished. +314: Writing transformation ... +314: Warping... +314: Running: plm_warp_native +314: Converting input image... +314: Converting xform... +314: bspline_xform_initialize +314: rdims = (2,2,2) +314: vox_per_rgn = (22,22,22) +314: cdims = (5 5 5) +314: Creating output vf... +314: Creating output volume... +314: Running native warper... +314: bspline_warp complete. +314: Back convert to original type... +314: > Convert vf to itk +314: > Conversion complete. +314: plm_warp_native is complete. +314: Saving image... +314: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha +314: Saving vf... +314: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-vf.mha +314: Load: 0.100829 +314: Run: 0.238909 +314: Save: 0.113554 +314: Total: 0.453292 +314: Finished! +314: +314: STDERR: +314: Not an error 323: RETVAL: 0 323: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 323: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -6195,22 +6258,22 @@ 323: Setting nmax, mmax = 375 21 323: >>> START 323: This problem is unconstrained. -323: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.028 s ] +323: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.013 s ] 323: CMIN 0.00 CAVG 0.00 CMAX 0.00 323: LSD 0.00 -323: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.016 s ] +323: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.011 s ] 323: CMIN -0.07 CAVG 0.01 CMAX 0.68 323: LSD 1.00 -323: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.017 s ] +323: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.008 s ] 323: CMIN -0.35 CAVG 0.05 CMAX 3.40 323: LSD 5.00 -323: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.016 s ] +323: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.008 s ] 323: CMIN -1.48 CAVG 0.20 CMAX 14.26 323: LSD 21.00 -323: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.016 s ] +323: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.007 s ] 323: CMIN -1.74 CAVG 0.44 CMAX 32.50 323: LSD 27.95 -323: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.024 s ] +323: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.004 s ] 323: CMIN -1.73 CAVG 0.34 CMAX 23.99 323: LSD 13.11 323: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -6241,22 +6304,25 @@ 323: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha 323: Saving vf... 323: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-vf.mha -323: Load: 0.140429 -323: Run: 0.186768 -323: Save: 0.118136 -323: Total: 0.445333 +323: Load: 0.17309 +323: Run: 0.0880861 +323: Save: 0.092356 +323: Total: 0.353532 323: Finished! 323: 323: STDERR: -323: Not an error -108/578 Test #323: plm-bsp-mse-k ......................... Passed 1.10 sec +369: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +369: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt +369: EXPECTED_ERRNO is +107/578 Test #314: plm-bsp-mse-g ......................... Passed 0.81 sec test 372 Start 372: plm-bsp-regularize-analytic 372: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 372: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 372: Test timeout computed to be: 1500 -109/578 Test #301: plm-reg-itk-demons .................... Passed 1.35 sec +323: Not an error +108/578 Test #323: plm-bsp-mse-k ......................... Passed 0.71 sec test 375 Start 375: plm-bsp-regularize-numeric @@ -6266,103 +6332,26 @@ 372: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 372: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic.txt 372: EXPECTED_ERRNO is -314: RETVAL: 0 -314: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -314: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -314: Launching registration worker thread -314: Inside registration worker thread -314: Doing registration stage -314: [1] xf_in->m_type = 0, xf_out->m_type = 0 -314: RESAMPLE 1 1: (2 2 2), (2 2 2) -314: RESAMPLE 1 1: (2 2 2), (2 2 2) -314: volume_calc_grad complete. -314: bspline_xform_initialize -314: rdims = (2,2,2) -314: vox_per_rgn = (11,11,11) -314: cdims = (5 5 5) -314: Algorithm flavor = g -314: Threading = 0 -314: >> Checking JH allocation -314: BSPLINE PARMS -314: max_its = 5 -314: max_feval = 5 -314: BSPLINE XFORM HEADER -314: vox_per_rgn = 11 11 11 -314: roi_offset = 0 0 0 -314: roi_dim = 19 19 19 -314: img_dc = 1 0 0 0 1 0 0 0 1 -314: BST METRICS -314: MET 110100 MSE 1.000000 -314: Setting nmax, mmax = 375 21 -314: >>> START -314: This problem is unconstrained. -314: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.057 s ] -314: CMIN 0.00 CAVG 0.00 CMAX 0.00 -314: LSD 0.00 -314: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.060 s ] -314: CMIN -0.07 CAVG 0.01 CMAX 0.68 -314: LSD 1.00 -314: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.052 s ] -314: CMIN -0.35 CAVG 0.05 CMAX 3.40 -314: LSD 5.00 -314: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.036 s ] -314: CMIN -1.48 CAVG 0.20 CMAX 14.26 -314: LSD 21.00 -314: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.039 s ] -314: CMIN -1.74 CAVG 0.44 CMAX 32.50 -314: LSD 27.95 -314: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.024 s ] -314: CMIN -1.73 CAVG 0.34 CMAX 23.99 -314: LSD 13.11 -314: [2] xf_out->m_type = 9, xf_in->m_type = 0 -314: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -314: bspline_xform_initialize -314: rdims = (2,2,2) -314: vox_per_rgn = (22,22,22) -314: cdims = (5 5 5) -314: ** Registration worker thread finished. -314: Writing transformation ... -314: Warping... -314: Running: plm_warp_native -314: Converting input image... -314: Converting xform... -314: bspline_xform_initialize -314: rdims = (2,2,2) -314: vox_per_rgn = (22,22,22) -314: cdims = (5 5 5) -314: Creating output vf... -314: Creating output volume... -314: Running native warper... -314: bspline_warp complete. -314: Back convert to original type... -314: > Convert vf to itk -314: > Conversion complete. -314: plm_warp_native is complete. -314: Saving image... -314: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha -314: Saving vf... -314: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-vf.mha -314: Load: 0.187573 -314: Run: 0.324336 -314: Save: 0.126334 -314: Total: 0.638243 -314: Finished! -314: -314: STDERR: -314: Not an error -110/578 Test #314: plm-bsp-mse-g ......................... Passed 1.32 sec +375: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +375: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric.txt +375: EXPECTED_ERRNO is +22: RETVAL: 0 +22: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha +22: Doing extraction +22: Keyholizing structure 0. +22: Keyholizing structure 1. +22: Keyholizing structure 2. +22: Write: DoseGridScaling = 0.000000 +22: +22: STDERR: +22: Not an error +109/578 Test #22: lung-2 ................................ Passed 4.14 sec test 379 Start 379: plm-bsp-landmark-b 379: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 379: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 379: Test timeout computed to be: 1500 -379: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -379: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt -379: EXPECTED_ERRNO is -375: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -375: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric.txt -375: EXPECTED_ERRNO is 320: RETVAL: 0 320: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 320: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -6393,22 +6382,22 @@ 320: Setting nmax, mmax = 375 21 320: >>> START 320: This problem is unconstrained. -320: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.066 s ] +320: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.052 s ] 320: CMIN 0.00 CAVG 0.00 CMAX 0.00 320: LSD 0.00 -320: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.050 s ] +320: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.029 s ] 320: CMIN -0.07 CAVG 0.01 CMAX 0.68 320: LSD 1.00 -320: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.040 s ] +320: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.046 s ] 320: CMIN -0.35 CAVG 0.05 CMAX 3.40 320: LSD 5.00 -320: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.040 s ] +320: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.044 s ] 320: CMIN -1.48 CAVG 0.20 CMAX 14.26 320: LSD 21.00 -320: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.040 s ] +320: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.046 s ] 320: CMIN -1.74 CAVG 0.44 CMAX 32.50 320: LSD 27.95 -320: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.053 s ] +320: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.014 s ] 320: CMIN -1.73 CAVG 0.34 CMAX 23.99 320: LSD 13.11 320: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -6439,24 +6428,21 @@ 320: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha 320: Saving vf... 320: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-vf.mha -320: Load: 0.189786 -320: Run: 0.367456 -320: Save: 0.125205 -320: Total: 0.682447 +320: Load: 0.132655 +320: Run: 0.267424 +320: Save: 0.0923719 +320: Total: 0.492451 320: Finished! 320: 320: STDERR: 320: Not an error -111/578 Test #320: plm-bsp-mse-i ......................... Passed 1.38 sec +110/578 Test #320: plm-bsp-mse-i ......................... Passed 0.94 sec test 382 Start 382: plm-bsp-landmark-c 382: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 382: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 382: Test timeout computed to be: 1500 -382: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -382: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt -382: EXPECTED_ERRNO is 326: RETVAL: 0 326: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 326: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -6487,22 +6473,22 @@ 326: Setting nmax, mmax = 375 21 326: >>> START 326: This problem is unconstrained. -326: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.022 s ] +326: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.012 s ] 326: CMIN 0.00 CAVG 0.00 CMAX 0.00 326: LSD 0.00 -326: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.013 s ] +326: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.003 s ] 326: CMIN -0.07 CAVG 0.01 CMAX 0.68 326: LSD 1.00 -326: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.022 s ] +326: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.004 s ] 326: CMIN -0.35 CAVG 0.05 CMAX 3.40 326: LSD 5.00 -326: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.013 s ] +326: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.004 s ] 326: CMIN -1.48 CAVG 0.20 CMAX 14.26 326: LSD 21.00 -326: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.013 s ] +326: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.003 s ] 326: CMIN -1.74 CAVG 0.44 CMAX 32.50 326: LSD 27.95 -326: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.015 s ] +326: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.004 s ] 326: CMIN -1.73 CAVG 0.34 CMAX 23.99 326: LSD 13.11 326: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -6533,132 +6519,90 @@ 326: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha 326: Saving vf... 326: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-vf.mha -326: Load: 0.312754 -326: Run: 0.135905 -326: Save: 0.11387 -326: Total: 0.562529 +326: Load: 0.243646 +326: Run: 0.079839 +326: Save: 0.117001 +326: Total: 0.440486 326: Finished! 326: 326: STDERR: 326: Not an error -112/578 Test #326: plm-bsp-mse-l ......................... Passed 1.50 sec +379: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +379: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt +379: EXPECTED_ERRNO is +111/578 Test #326: plm-bsp-mse-l ......................... Passed 0.88 sec test 385 Start 385: plm-bsp-landmark-d 385: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 385: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 385: Test timeout computed to be: 1500 +382: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +382: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt +382: EXPECTED_ERRNO is 385: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 385: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d.txt 385: EXPECTED_ERRNO is -343: RETVAL: 0 -343: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -343: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha -343: Launching registration worker thread -343: Inside registration worker thread -343: Doing registration stage -343: [1] xf_in->m_type = 0, xf_out->m_type = 0 -343: RESAMPLE 1 1: (2 2 2), (2 2 2) -343: RESAMPLE 1 1: (2 2 2), (2 2 2) -343: volume_calc_grad complete. -343: bspline_xform_initialize -343: rdims = (5,5,5) -343: vox_per_rgn = (4,4,4) -343: cdims = (8 8 8) -343: Algorithm flavor = k -343: Threading = 0 -343: >> Checking JH allocation -343: >> Performing JH allocation -343: BSPLINE PARMS -343: max_its = 10 -343: max_feval = 10 -343: BSPLINE XFORM HEADER -343: vox_per_rgn = 4 4 4 -343: roi_offset = 0 0 0 -343: roi_dim = 19 19 19 -343: img_dc = 1 0 0 0 1 0 0 0 1 -343: BST METRICS -343: MET 110100 MI 1.000000 -343: >> Performing JH initialization -343: Setting nmax, mmax = 1536 41 -343: >>> START -343: This problem is unconstrained. -343: [ 0, 0] MI -0.4031359 NV 6859 GM 0.148 GN 0.02 [ 0.037 s ] -343: CMIN 0.01 CAVG 0.01 CMAX 0.01 -343: LSD 0.00 -343: [ 0, 1] MI -0.3911095 NV 6859 GM -0.174 GN 0.0182 [ 0.028 s ] -343: CMIN -0.26 CAVG 0.01 CMAX 0.05 -343: LSD 1.00 -343: [ 0, 2] MI -0.4031149 NV 6859 GM -0.183 GN 0.0211 [ 0.020 s ] -343: CMIN -0.04 CAVG 0.01 CMAX 0.02 -343: LSD 0.18 -343: [ 0, 3] MI -0.4046610 NV 6859 GM -0.025 GN 0.0104 [ 0.028 s ] -343: CMIN -0.01 CAVG 0.01 CMAX 0.01 -343: LSD 0.09 -343: [ 1, 4] MI -0.4047489 NV 6859 GM 0.114 GN 0.0175 [ 0.020 s ] -343: CMIN -0.01 CAVG 0.01 CMAX 0.02 -343: LSD 0.02 -343: [ 2, 5] MI -0.4048453 NV 6859 GM -0.028 GN 0.0107 [ 0.033 s ] -343: CMIN -0.01 CAVG 0.01 CMAX 0.02 -343: LSD 0.02 -343: [ 3, 6] MI -0.4049332 NV 6859 GM -0.040 GN 0.011 [ 0.015 s ] -343: CMIN -0.01 CAVG 0.01 CMAX 0.02 -343: LSD 0.02 -343: [ 4, 7] MI -0.4051392 NV 6859 GM 0.031 GN 0.0124 [ 0.012 s ] -343: CMIN -0.03 CAVG 0.01 CMAX 0.04 -343: LSD 0.14 -343: [ 5, 8] MI -0.4052844 NV 6859 GM -0.024 GN 0.00604 [ 0.012 s ] -343: CMIN -0.03 CAVG 0.01 CMAX 0.05 -343: LSD 0.04 -343: [ 6, 9] MI -0.4053446 NV 6859 GM -0.069 GN 0.00892 [ 0.012 s ] -343: CMIN -0.04 CAVG 0.01 CMAX 0.06 -343: LSD 0.03 -343: [ 7, 10] MI -0.4054493 NV 6859 GM -0.111 GN 0.0121 [ 0.036 s ] -343: CMIN -0.04 CAVG 0.01 CMAX 0.07 -343: LSD 0.05 -343: [2] xf_out->m_type = 9, xf_in->m_type = 0 -343: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -343: bspline_xform_initialize -343: rdims = (5,5,5) -343: vox_per_rgn = (8,8,8) -343: cdims = (8 8 8) -343: ** Registration worker thread finished. -343: Writing transformation ... -343: Warping... -343: Running: plm_warp_native -343: Converting input image... -343: Converting xform... -343: bspline_xform_initialize -343: rdims = (5,5,5) -343: vox_per_rgn = (8,8,8) -343: cdims = (8 8 8) -343: Creating output vf... -343: Creating output volume... -343: Running native warper... -343: bspline_warp complete. -343: Back convert to original type... -343: > Convert vf to itk -343: > Conversion complete. -343: plm_warp_native is complete. -343: Saving image... -343: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha -343: Saving vf... -343: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-vf.mha -343: Load: 0.100316 -343: Run: 0.304305 -343: Save: 0.0989411 -343: Total: 0.503562 -343: Finished! -343: -343: STDERR: -343: Not an error -113/578 Test #343: plm-bsp-mi-k .......................... Passed 1.52 sec +193: RETVAL: 0 +193: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379637.1717523409.822729RTDOSE +193: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379637.1717523409.822730RTSTRUCT +193: Found DCM_ReferencedFrameOfReferenceSequence! +193: Found DCM_RTReferencedStudySequence! +193: Trying to load rt dose. +193: Load: DoseGridScaling = 0.000000 +193: RTDOSE: dim = 100 100 100 +193: ipp = -247.500000 -247.500000 -247.500000 +193: spc = 5.000000 5.000000 5.000000 +193: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +193: Bits_alloc: 32 +193: Bits_stored: 32 +193: High_bit: 31 +193: Pixel_rep: 0 +193: rc = 1, length = 2000000, npix = 1000000 +193: Trying to load rt structure set. +193: Adding structure (1), Body +193: Adding structure (2), Tumor +193: Adding structure (3), Lung +193: Structure 1 has color 255\0\0 +193: Structure 2 has color 255\255\0 +193: Structure 3 has color 255\0\255 +193: Setting PIH from RDD +193: PIH is: +193: Origin = -247.5000 -247.5000 -247.5000 +193: Size = 100 100 100 +193: Spacing = 5.0000 5.0000 5.0000 +193: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +193: Rt_study_warp: Convert ss_img to cxt. +193: Rt_study_warp: Apply dicom_dir. +193: Rt_study_warp: Set geometry from PIH. +193: Rt_study_warp: Set rasterization geometry. +193: rast_dim = 512 512 99 +193: rast_offset = -157.5 -157.5 -247.5 +193: rast_spacing = 0.615234 0.615234 5 +193: Rt_study_warp: warp and save ss. +193: Warp_and_save_ss: seg->rasterize +193: Rasterizing... +193: Converting... +193: Finished rasterization. +193: Warp_and_save_ss: save_ss_img +193: save_ss_img: save_prefix +193: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Body.mha +193: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha +193: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Lung.mha +193: Finished! +193: +193: STDERR: +193: Not an error +112/578 Test #193: plm-convert-dicom-c ................... Passed 1.02 sec test 388 Start 388: plm-bsp-landmark-e 388: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 388: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 388: Test timeout computed to be: 1500 +388: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +388: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt +388: EXPECTED_ERRNO is 337: RETVAL: 0 337: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 337: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha @@ -6691,37 +6635,37 @@ 337: Setting nmax, mmax = 1536 41 337: >>> START 337: This problem is unconstrained. -337: [ 0, 0] MI -0.4031359 NV 6859 GM 0.148 GN 0.02 [ 0.040 s ] +337: [ 0, 0] MI -0.4031359 NV 6859 GM 0.148 GN 0.02 [ 0.011 s ] 337: CMIN 0.01 CAVG 0.01 CMAX 0.01 337: LSD 0.00 -337: [ 0, 1] MI -0.3911095 NV 6859 GM -0.174 GN 0.0182 [ 0.034 s ] +337: [ 0, 1] MI -0.3911095 NV 6859 GM -0.174 GN 0.0182 [ 0.021 s ] 337: CMIN -0.26 CAVG 0.01 CMAX 0.05 337: LSD 1.00 -337: [ 0, 2] MI -0.4031149 NV 6859 GM -0.183 GN 0.0211 [ 0.021 s ] +337: [ 0, 2] MI -0.4031149 NV 6859 GM -0.183 GN 0.0211 [ 0.019 s ] 337: CMIN -0.04 CAVG 0.01 CMAX 0.02 337: LSD 0.18 -337: [ 0, 3] MI -0.4046610 NV 6859 GM -0.025 GN 0.0104 [ 0.036 s ] +337: [ 0, 3] MI -0.4046610 NV 6859 GM -0.025 GN 0.0104 [ 0.022 s ] 337: CMIN -0.01 CAVG 0.01 CMAX 0.01 337: LSD 0.09 -337: [ 1, 4] MI -0.4047489 NV 6859 GM 0.114 GN 0.0175 [ 0.036 s ] +337: [ 1, 4] MI -0.4047489 NV 6859 GM 0.114 GN 0.0175 [ 0.025 s ] 337: CMIN -0.01 CAVG 0.01 CMAX 0.02 337: LSD 0.02 -337: [ 2, 5] MI -0.4048453 NV 6859 GM -0.028 GN 0.0107 [ 0.029 s ] +337: [ 2, 5] MI -0.4048453 NV 6859 GM -0.028 GN 0.0107 [ 0.030 s ] 337: CMIN -0.01 CAVG 0.01 CMAX 0.02 337: LSD 0.02 -337: [ 3, 6] MI -0.4049332 NV 6859 GM -0.040 GN 0.011 [ 0.029 s ] +337: [ 3, 6] MI -0.4049332 NV 6859 GM -0.040 GN 0.011 [ 0.019 s ] 337: CMIN -0.01 CAVG 0.01 CMAX 0.02 337: LSD 0.02 -337: [ 4, 7] MI -0.4051392 NV 6859 GM 0.031 GN 0.0124 [ 0.024 s ] +337: [ 4, 7] MI -0.4051392 NV 6859 GM 0.031 GN 0.0124 [ 0.022 s ] 337: CMIN -0.03 CAVG 0.01 CMAX 0.04 337: LSD 0.14 -337: [ 5, 8] MI -0.4052844 NV 6859 GM -0.024 GN 0.00604 [ 0.048 s ] +337: [ 5, 8] MI -0.4052844 NV 6859 GM -0.024 GN 0.00604 [ 0.023 s ] 337: CMIN -0.03 CAVG 0.01 CMAX 0.05 337: LSD 0.04 -337: [ 6, 9] MI -0.4053446 NV 6859 GM -0.069 GN 0.00892 [ 0.067 s ] +337: [ 6, 9] MI -0.4053446 NV 6859 GM -0.069 GN 0.00892 [ 0.025 s ] 337: CMIN -0.04 CAVG 0.01 CMAX 0.06 337: LSD 0.03 -337: [ 7, 10] MI -0.4054493 NV 6859 GM -0.111 GN 0.0121 [ 0.056 s ] +337: [ 7, 10] MI -0.4054493 NV 6859 GM -0.111 GN 0.0121 [ 0.030 s ] 337: CMIN -0.04 CAVG 0.01 CMAX 0.07 337: LSD 0.05 337: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -6752,24 +6696,24 @@ 337: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha 337: Saving vf... 337: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-vf.mha -337: Load: 0.223977 -337: Run: 0.486676 -337: Save: 0.097209 -337: Total: 0.807862 +337: Load: 0.084681 +337: Run: 0.27647 +337: Save: 0.0754981 +337: Total: 0.436649 337: Finished! 337: 337: STDERR: 337: Not an error -114/578 Test #337: plm-bsp-mi-c .......................... Passed 1.65 sec +113/578 Test #337: plm-bsp-mi-c .......................... Passed 1.08 sec test 391 Start 391: plm-bsp-dcos-a 391: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 391: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 391: Test timeout computed to be: 1500 -388: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -388: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt -388: EXPECTED_ERRNO is +391: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +391: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt +391: EXPECTED_ERRNO is 346: RETVAL: 0 346: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 346: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha @@ -6802,67 +6746,67 @@ 346: Setting nmax, mmax = 1536 41 346: >>> START 346: This problem is unconstrained. -346: [ 0, 0] GM 172.628 NV 6859 GM -29.170 GN 4.3 [ 0.017 s ] +346: [ 0, 0] GM 172.628 NV 6859 GM -29.170 GN 4.3 [ 0.004 s ] 346: CMIN 0.00 CAVG 0.00 CMAX 0.00 346: LSD 0.00 -346: [ 0, 1] GM 167.918 NV 6859 GM -28.658 GN 4.22 [ 0.013 s ] +346: [ 0, 1] GM 167.918 NV 6859 GM -28.658 GN 4.22 [ 0.012 s ] 346: CMIN -0.13 CAVG 0.00 CMAX 0.22 346: LSD 1.00 -346: [ 0, 2] GM 149.959 NV 6859 GM -26.618 GN 3.91 [ 0.005 s ] +346: [ 0, 2] GM 149.959 NV 6859 GM -26.618 GN 3.91 [ 0.012 s ] 346: CMIN -0.66 CAVG 0.02 CMAX 1.08 346: LSD 5.00 -346: [ 0, 3] GM 86.734 NV 6751 GM -21.624 GN 3.16 [ 0.017 s ] +346: [ 0, 3] GM 86.734 NV 6751 GM -21.624 GN 3.16 [ 0.008 s ] 346: CMIN -2.76 CAVG 0.09 CMAX 4.52 346: LSD 21.00 -346: [ 1, 4] GM 45.340 NV 6066 GM 12.985 GN 2.28 [ 0.021 s ] +346: [ 1, 4] GM 45.340 NV 6066 GM 12.985 GN 2.28 [ 0.008 s ] 346: CMIN -8.79 CAVG 0.42 CMAX 26.13 346: LSD 77.01 -346: [ 2, 5] GM 7.1179175 NV 6185 GM -1.370 GN 0.385 [ 0.013 s ] +346: [ 2, 5] GM 7.1179175 NV 6185 GM -1.370 GN 0.385 [ 0.008 s ] 346: CMIN -7.46 CAVG 0.30 CMAX 17.43 346: LSD 31.38 -346: [ 3, 6] GM 5.8718486 NV 6215 GM -1.061 GN 0.253 [ 0.009 s ] +346: [ 3, 6] GM 5.8718486 NV 6215 GM -1.061 GN 0.253 [ 0.012 s ] 346: CMIN -7.26 CAVG 0.31 CMAX 16.96 346: LSD 4.23 346: [ 4, 7] GM 4.1875200 NV 6252 GM -0.481 GN 0.302 [ 0.012 s ] 346: CMIN -7.17 CAVG 0.33 CMAX 15.50 346: LSD 8.87 -346: [ 5, 8] GM 2.5404434 NV 6268 GM 0.199 GN 0.327 [ 0.009 s ] +346: [ 5, 8] GM 2.5404434 NV 6268 GM 0.199 GN 0.327 [ 0.004 s ] 346: CMIN -7.33 CAVG 0.37 CMAX 12.64 346: LSD 13.58 -346: [ 6, 9] GM 1.5809063 NV 6272 GM 0.253 GN 0.261 [ 0.008 s ] +346: [ 6, 9] GM 1.5809063 NV 6272 GM 0.253 GN 0.261 [ 0.004 s ] 346: CMIN -7.57 CAVG 0.41 CMAX 16.21 346: LSD 17.78 -346: [ 7, 10] GM 1.2611113 NV 6186 GM -0.858 GN 0.254 [ 0.012 s ] +346: [ 7, 10] GM 1.2611113 NV 6186 GM -0.858 GN 0.254 [ 0.003 s ] 346: CMIN -8.47 CAVG 0.41 CMAX 17.69 346: LSD 6.01 -346: [ 8, 11] GM 0.8998204 NV 6202 GM -0.272 GN 0.0629 [ 0.005 s ] +346: [ 8, 11] GM 0.8998204 NV 6202 GM -0.272 GN 0.0629 [ 0.004 s ] 346: CMIN -8.10 CAVG 0.41 CMAX 16.37 346: LSD 4.02 -346: [ 9, 12] GM 0.8851209 NV 6200 GM -0.119 GN 0.0425 [ 0.008 s ] +346: [ 9, 12] GM 0.8851209 NV 6200 GM -0.119 GN 0.0425 [ 0.003 s ] 346: CMIN -8.11 CAVG 0.41 CMAX 16.43 346: LSD 1.40 -346: [10, 13] GM 0.8340189 NV 6185 GM -0.041 GN 0.0494 [ 0.012 s ] +346: [10, 13] GM 0.8340189 NV 6185 GM -0.041 GN 0.0494 [ 0.016 s ] 346: CMIN -8.22 CAVG 0.42 CMAX 16.47 346: LSD 2.71 -346: [11, 14] GM 0.7303342 NV 6158 GM 0.209 GN 0.0438 [ 0.017 s ] +346: [11, 14] GM 0.7303342 NV 6158 GM 0.209 GN 0.0438 [ 0.003 s ] 346: CMIN -8.31 CAVG 0.43 CMAX 16.15 346: LSD 3.16 -346: [12, 15] GM 0.6365445 NV 6149 GM -0.660 GN 0.078 [ 0.021 s ] +346: [12, 15] GM 0.6365445 NV 6149 GM -0.660 GN 0.078 [ 0.004 s ] 346: CMIN -8.30 CAVG 0.43 CMAX 15.18 346: LSD 6.07 -346: [13, 16] GM 0.5679634 NV 6142 GM 0.051 GN 0.0445 [ 0.020 s ] +346: [13, 16] GM 0.5679634 NV 6142 GM 0.051 GN 0.0445 [ 0.008 s ] 346: CMIN -8.24 CAVG 0.45 CMAX 14.83 346: LSD 4.36 -346: [14, 17] GM 0.4986858 NV 6140 GM 0.219 GN 0.0371 [ 0.025 s ] +346: [14, 17] GM 0.4986858 NV 6140 GM 0.219 GN 0.0371 [ 0.003 s ] 346: CMIN -8.07 CAVG 0.45 CMAX 14.65 346: LSD 3.34 -346: [15, 18] GM 0.4631230 NV 6160 GM 0.148 GN 0.0299 [ 0.025 s ] +346: [15, 18] GM 0.4631230 NV 6160 GM 0.148 GN 0.0299 [ 0.003 s ] 346: CMIN -7.80 CAVG 0.46 CMAX 14.76 346: LSD 4.03 -346: [16, 19] GM 0.4685278 NV 6160 GM 0.115 GN 0.0395 [ 0.016 s ] +346: [16, 19] GM 0.4685278 NV 6160 GM 0.115 GN 0.0395 [ 0.008 s ] 346: CMIN -7.51 CAVG 0.46 CMAX 15.22 346: LSD 3.59 -346: [16, 20] GM 0.4544649 NV 6161 GM 0.152 GN 0.026 [ 0.016 s ] +346: [16, 20] GM 0.4544649 NV 6161 GM 0.152 GN 0.026 [ 0.007 s ] 346: CMIN -7.71 CAVG 0.46 CMAX 14.89 346: LSD 1.09 346: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -6893,115 +6837,223 @@ 346: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha 346: Saving vf... 346: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-vf.mha -346: Load: 0.146497 -346: Run: 0.400197 -346: Save: 0.101378 -346: Total: 0.648072 +346: Load: 0.15188 +346: Run: 0.251818 +346: Save: 0.0794172 +346: Total: 0.483115 346: Finished! 346: 346: STDERR: 346: Not an error -115/578 Test #346: plm-bsp-gm-k .......................... Passed 1.57 sec +114/578 Test #346: plm-bsp-gm-k .......................... Passed 1.30 sec test 394 Start 394: plm-bsp-dcos-b 394: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 394: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 394: Test timeout computed to be: 1500 -351: RETVAL: 0 -351: STDOUT: Loading fixed image [0]: gauss-1.mha -351: Loading moving image [0]: gauss-2.mha -351: Launching registration worker thread -351: Inside registration worker thread -351: Doing registration stage -351: [1] xf_in->m_type = 0, xf_out->m_type = 0 -351: RESAMPLE 1 1: (2 2 2), (2 2 2) -351: RESAMPLE 1 1: (2 2 2), (2 2 2) -351: volume_calc_grad complete. -351: bspline_xform_initialize -351: rdims = (2,2,2) -351: vox_per_rgn = (11,11,11) -351: cdims = (5 5 5) -351: Algorithm flavor = g -351: Threading = 0 -351: >> Checking JH allocation -351: BSPLINE PARMS -351: max_its = 5 -351: max_feval = 5 -351: BSPLINE XFORM HEADER -351: vox_per_rgn = 11 11 11 -351: roi_offset = 0 0 0 -351: roi_dim = 19 19 19 -351: img_dc = 1 0 0 0 1 0 0 0 1 -351: BST METRICS -351: MET 110100 MSE 1.000000 -351: Setting nmax, mmax = 375 21 -351: >>> START -351: This problem is unconstrained. -351: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.060 s ] -351: CMIN 0.00 CAVG 0.00 CMAX 0.00 -351: LSD 0.00 -351: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.052 s ] -351: CMIN -0.07 CAVG 0.01 CMAX 0.68 -351: LSD 1.00 -351: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.036 s ] -351: CMIN -0.35 CAVG 0.05 CMAX 3.40 -351: LSD 5.00 -351: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.044 s ] -351: CMIN -1.48 CAVG 0.20 CMAX 14.26 -351: LSD 21.00 -351: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.036 s ] -351: CMIN -1.74 CAVG 0.44 CMAX 32.50 -351: LSD 27.95 -351: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.044 s ] -351: CMIN -1.73 CAVG 0.34 CMAX 23.99 -351: LSD 13.11 -351: [2] xf_out->m_type = 9, xf_in->m_type = 0 -351: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -351: bspline_xform_initialize -351: rdims = (2,2,2) -351: vox_per_rgn = (22,22,22) -351: cdims = (5 5 5) -351: ** Registration worker thread finished. -351: Writing transformation ... -351: Warping... -351: Running: plm_warp_native -351: Converting input image... -351: Converting xform... -351: bspline_xform_initialize -351: rdims = (2,2,2) -351: vox_per_rgn = (22,22,22) -351: cdims = (5 5 5) -351: Creating output vf... -351: Creating output volume... -351: Running native warper... -351: bspline_warp complete. -351: Back convert to original type... -351: > Convert vf to itk -351: > Conversion complete. -351: plm_warp_native is complete. -351: Saving image... -351: Trying to write image to plm-bsp-openmp-img.mha -351: Saving vf... -351: Trying to write image to plm-bsp-openmp-vf.mha -351: Load: 0.212434 -351: Run: 0.317079 -351: Save: 0.0859818 -351: Total: 0.615495 -351: Finished! -351: -351: STDERR: -351: Not an error -391: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -391: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt -391: EXPECTED_ERRNO is -116/578 Test #351: plm-bsp-openmp ........................ Passed 1.58 sec +358: RETVAL: 0 +358: STDOUT: Loading fixed image [0]: gauss-ushort-1.mha +358: Loading moving image [0]: gauss-ushort-2.mha +358: Launching registration worker thread +358: Inside registration worker thread +358: Doing registration stage +358: [1] xf_in->m_type = 0, xf_out->m_type = 0 +358: RESAMPLE 1 1: (2 2 2), (2 2 2) +358: RESAMPLE 1 1: (2 2 2), (2 2 2) +358: volume_calc_grad complete. +358: bspline_xform_initialize +358: rdims = (2,2,2) +358: vox_per_rgn = (11,11,11) +358: cdims = (5 5 5) +358: Algorithm flavor = h +358: Threading = 0 +358: >> Checking JH allocation +358: BSPLINE PARMS +358: max_its = 5 +358: max_feval = 5 +358: BSPLINE XFORM HEADER +358: vox_per_rgn = 11 11 11 +358: roi_offset = 0 0 0 +358: roi_dim = 19 19 19 +358: img_dc = 1 0 0 0 1 0 0 0 1 +358: BST METRICS +358: MET 110100 MSE 1.000000 +358: Setting nmax, mmax = 375 21 +358: >>> START +358: This problem is unconstrained. +358: [ 0, 0] MSE 18754.957 NV 6859 GM -2979.950 GN 852 [ 0.011 s ] +358: CMIN 0.00 CAVG 0.00 CMAX 0.00 +358: LSD 0.00 +358: [ 0, 1] MSE 17837.379 NV 6859 GM -2882.285 GN 824 [ 0.012 s ] +358: CMIN -0.07 CAVG 0.01 CMAX 0.68 +358: LSD 1.00 +358: [ 0, 2] MSE 14463.688 NV 6858 GM -2822.063 GN 824 [ 0.008 s ] +358: CMIN -0.35 CAVG 0.05 CMAX 3.40 +358: LSD 5.00 +358: [ 0, 3] MSE 3828.428 NV 6286 GM -1585.519 GN 459 [ 0.007 s ] +358: CMIN -1.48 CAVG 0.20 CMAX 14.26 +358: LSD 21.00 +358: [ 1, 4] MSE 3098.900 NV 5455 GM 1176.149 GN 399 [ 0.007 s ] +358: CMIN -1.74 CAVG 0.44 CMAX 32.50 +358: LSD 27.95 +358: [ 2, 5] MSE 281.899 NV 5851 GM 54.406 GN 43.4 [ 0.011 s ] +358: CMIN -1.73 CAVG 0.34 CMAX 23.98 +358: LSD 13.11 +358: [2] xf_out->m_type = 9, xf_in->m_type = 0 +358: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +358: bspline_xform_initialize +358: rdims = (2,2,2) +358: vox_per_rgn = (22,22,22) +358: cdims = (5 5 5) +358: ** Registration worker thread finished. +358: Writing transformation ... +358: Warping... +358: Running: plm_warp_native +358: Converting input image... +358: Converting xform... +358: bspline_xform_initialize +358: rdims = (2,2,2) +358: vox_per_rgn = (22,22,22) +358: cdims = (5 5 5) +358: Creating output vf... +358: Creating output volume... +358: Running native warper... +358: bspline_warp complete. +358: Back convert to original type... +358: > Convert vf to itk +358: > Conversion complete. +358: plm_warp_native is complete. +358: Saving image... +358: Trying to write image to plm-bsp-ushort-img.mha +358: Saving vf... +358: Trying to write image to plm-bsp-ushort-vf.mha +358: Load: 0.174034 +358: Run: 0.0875969 +358: Save: 0.0791161 +358: Total: 0.340747 +358: Finished! +358: +358: STDERR: +358: Not an error +343: RETVAL: 0 +343: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +343: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha +343: Launching registration worker thread +343: Inside registration worker thread +343: Doing registration stage +343: [1] xf_in->m_type = 0, xf_out->m_type = 0 +343: RESAMPLE 1 1: (2 2 2), (2 2 2) +343: RESAMPLE 1 1: (2 2 2), (2 2 2) +343: volume_calc_grad complete. +343: bspline_xform_initialize +343: rdims = (5,5,5) +343: vox_per_rgn = (4,4,4) +343: cdims = (8 8 8) +343: Algorithm flavor = k +343: Threading = 0 +343: >> Checking JH allocation +343: >> Performing JH allocation +343: BSPLINE PARMS +343: max_its = 10 +343: max_feval = 10 +343: BSPLINE XFORM HEADER +343: vox_per_rgn = 4 4 4 +343: roi_offset = 0 0 0 +343: roi_dim = 19 19 19 +343: img_dc = 1 0 0 0 1 0 0 0 1 +343: BST METRICS +343: MET 110100 MI 1.000000 +343: >> Performing JH initialization +343: Setting nmax, mmax = 1536 41 +343: >>> START +343: This problem is unconstrained. +343: [ 0, 0] MI -0.4031359 NV 6859 GM 0.148 GN 0.02 [ 0.025 s ] +343: CMIN 0.01 CAVG 0.01 CMAX 0.01 +343: LSD 0.00 +343: [ 0, 1] MI -0.3911095 NV 6859 GM -0.174 GN 0.0182 [ 0.009 s ] +343: CMIN -0.26 CAVG 0.01 CMAX 0.05 +343: LSD 1.00 +343: [ 0, 2] MI -0.4031149 NV 6859 GM -0.183 GN 0.0211 [ 0.009 s ] +343: CMIN -0.04 CAVG 0.01 CMAX 0.02 +343: LSD 0.18 +343: [ 0, 3] MI -0.4046610 NV 6859 GM -0.025 GN 0.0104 [ 0.017 s ] +343: CMIN -0.01 CAVG 0.01 CMAX 0.01 +343: LSD 0.09 +343: [ 1, 4] MI -0.4047489 NV 6859 GM 0.114 GN 0.0175 [ 0.025 s ] +343: CMIN -0.01 CAVG 0.01 CMAX 0.02 +343: LSD 0.02 +343: [ 2, 5] MI -0.4048453 NV 6859 GM -0.028 GN 0.0107 [ 0.018 s ] +343: CMIN -0.01 CAVG 0.01 CMAX 0.02 +343: LSD 0.02 +343: [ 3, 6] MI -0.4049332 NV 6859 GM -0.040 GN 0.011 [ 0.022 s ] +343: CMIN -0.01 CAVG 0.01 CMAX 0.02 +343: LSD 0.02 +343: [ 4, 7] MI -0.4051392 NV 6859 GM 0.031 GN 0.0124 [ 0.022 s ] +343: CMIN -0.03 CAVG 0.01 CMAX 0.04 +343: LSD 0.14 +343: [ 5, 8] MI -0.4052844 NV 6859 GM -0.024 GN 0.00604 [ 0.042 s ] +343: CMIN -0.03 CAVG 0.01 CMAX 0.05 +343: LSD 0.04 +343: [ 6, 9] MI -0.4053446 NV 6859 GM -0.069 GN 0.00892 [ 0.025 s ] +343: CMIN -0.04 CAVG 0.01 CMAX 0.06 +343: LSD 0.03 +343: [ 7, 10] MI -0.4054493 NV 6859 GM -0.111 GN 0.0121 [ 0.013 s ] +343: CMIN -0.04 CAVG 0.01 CMAX 0.07 +343: LSD 0.05 +343: [2] xf_out->m_type = 9, xf_in->m_type = 0 +343: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +343: bspline_xform_initialize +343: rdims = (5,5,5) +343: vox_per_rgn = (8,8,8) +343: cdims = (8 8 8) +343: ** Registration worker thread finished. +343: Writing transformation ... +343: Warping... +343: Running: plm_warp_native +343: Converting input image... +343: Converting xform... +343: bspline_xform_initialize +343: rdims = (5,5,5) +343: vox_per_rgn = (8,8,8) +343: cdims = (8 8 8) +343: Creating output vf... +343: Creating output volume... +343: Running native warper... +343: bspline_warp complete. +343: Back convert to original type... +343: > Convert vf to itk +343: > Conversion complete. +343: plm_warp_native is complete. +343: Saving image... +343: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha +343: Saving vf... +343: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-vf.mha +343: Load: 0.106699 +343: Run: 0.275859 +343: Save: 0.124289 +343: Total: 0.506847 +343: Finished! +343: +343: STDERR: +343: Not an error +115/578 Test #358: plm-bsp-ushort ........................ Passed 1.00 sec test 397 Start 397: plm-bsp-dcos-c 397: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 397: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 397: Test timeout computed to be: 1500 +116/578 Test #343: plm-bsp-mi-k .......................... Passed 1.36 sec +test 400 + Start 400: plm-bsp-dcos-d + +400: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +400: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +400: Test timeout computed to be: 1500 +394: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +394: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt +394: EXPECTED_ERRNO is 365: RETVAL: 0 365: STDOUT: Loading fixed image [0]: rect-2.mha 365: Loading moving image [0]: rect-3.mha @@ -7035,22 +7087,22 @@ 365: Setting nmax, mmax = 1536 41 365: >>> START 365: This problem is unconstrained. -365: [ 0, 0] MSE 1339.481 NV 6859 GM 84.834 GN 23.1 [ 0.025 s ] +365: [ 0, 0] MSE 1339.481 NV 6859 GM 84.834 GN 23.1 [ 0.016 s ] 365: CMIN 0.00 CAVG 0.00 CMAX 0.00 365: LSD 0.00 -365: [ 0, 1] MSE 1311.345 NV 6859 GM 83.820 GN 22.8 [ 0.025 s ] +365: [ 0, 1] MSE 1311.345 NV 6859 GM 83.820 GN 22.8 [ 0.012 s ] 365: CMIN -0.60 CAVG -0.00 CMAX 0.08 365: LSD 1.00 -365: [ 0, 2] MSE 1202.580 NV 6859 GM 79.773 GN 21.8 [ 0.019 s ] +365: [ 0, 2] MSE 1202.580 NV 6859 GM 79.773 GN 21.8 [ 0.012 s ] 365: CMIN -2.99 CAVG -0.01 CMAX 0.42 365: LSD 5.00 -365: [ 0, 3] MSE 827.300 NV 6859 GM 63.686 GN 17.5 [ 0.020 s ] +365: [ 0, 3] MSE 827.300 NV 6859 GM 63.686 GN 17.5 [ 0.016 s ] 365: CMIN -12.56 CAVG -0.05 CMAX 1.74 365: LSD 21.00 -365: [ 1, 4] MSE 213.043 NV 6859 GM -16.873 GN 5.84 [ 0.024 s ] +365: [ 1, 4] MSE 213.043 NV 6859 GM -16.873 GN 5.84 [ 0.020 s ] 365: CMIN -54.37 CAVG -0.20 CMAX 6.52 365: LSD 67.10 -365: [ 2, 5] MSE 175.936 NV 6859 GM -0.450 GN 2.34 [ 0.005 s ] +365: [ 2, 5] MSE 175.936 NV 6859 GM -0.450 GN 2.34 [ 0.028 s ] 365: CMIN -51.91 CAVG -0.18 CMAX 5.91 365: LSD 13.48 365: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -7075,112 +7127,15 @@ 365: plm_warp_native is complete. 365: Saving image... 365: Trying to write image to plm-bsp-char-output.mha -365: Load: 0.205462 -365: Run: 0.159053 -365: Save: 0.0786262 -365: Total: 0.443141 +365: Load: 0.210854 +365: Run: 0.152187 +365: Save: 0.128802 +365: Total: 0.491843 365: Finished! 365: 365: STDERR: 365: Not an error -117/578 Test #365: plm-bsp-char-output ................... Passed 1.25 sec -test 400 - Start 400: plm-bsp-dcos-d - -400: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -400: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -400: Test timeout computed to be: 1500 -394: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -394: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt -394: EXPECTED_ERRNO is -397: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -397: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt -397: EXPECTED_ERRNO is -358: RETVAL: 0 -358: STDOUT: Loading fixed image [0]: gauss-ushort-1.mha -358: Loading moving image [0]: gauss-ushort-2.mha -358: Launching registration worker thread -358: Inside registration worker thread -358: Doing registration stage -358: [1] xf_in->m_type = 0, xf_out->m_type = 0 -358: RESAMPLE 1 1: (2 2 2), (2 2 2) -358: RESAMPLE 1 1: (2 2 2), (2 2 2) -358: volume_calc_grad complete. -358: bspline_xform_initialize -358: rdims = (2,2,2) -358: vox_per_rgn = (11,11,11) -358: cdims = (5 5 5) -358: Algorithm flavor = h -358: Threading = 0 -358: >> Checking JH allocation -358: BSPLINE PARMS -358: max_its = 5 -358: max_feval = 5 -358: BSPLINE XFORM HEADER -358: vox_per_rgn = 11 11 11 -358: roi_offset = 0 0 0 -358: roi_dim = 19 19 19 -358: img_dc = 1 0 0 0 1 0 0 0 1 -358: BST METRICS -358: MET 110100 MSE 1.000000 -358: Setting nmax, mmax = 375 21 -358: >>> START -358: This problem is unconstrained. -358: [ 0, 0] MSE 18754.957 NV 6859 GM -2979.950 GN 852 [ 0.024 s ] -358: CMIN 0.00 CAVG 0.00 CMAX 0.00 -358: LSD 0.00 -358: [ 0, 1] MSE 17837.379 NV 6859 GM -2882.285 GN 824 [ 0.020 s ] -358: CMIN -0.07 CAVG 0.01 CMAX 0.68 -358: LSD 1.00 -358: [ 0, 2] MSE 14463.688 NV 6858 GM -2822.063 GN 824 [ 0.025 s ] -358: CMIN -0.35 CAVG 0.05 CMAX 3.40 -358: LSD 5.00 -358: [ 0, 3] MSE 3828.428 NV 6286 GM -1585.519 GN 459 [ 0.004 s ] -358: CMIN -1.48 CAVG 0.20 CMAX 14.26 -358: LSD 21.00 -358: [ 1, 4] MSE 3098.900 NV 5455 GM 1176.149 GN 399 [ 0.040 s ] -358: CMIN -1.74 CAVG 0.44 CMAX 32.50 -358: LSD 27.95 -358: [ 2, 5] MSE 281.899 NV 5851 GM 54.406 GN 43.4 [ 0.016 s ] -358: CMIN -1.73 CAVG 0.34 CMAX 23.98 -358: LSD 13.11 -358: [2] xf_out->m_type = 9, xf_in->m_type = 0 -358: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -358: bspline_xform_initialize -358: rdims = (2,2,2) -358: vox_per_rgn = (22,22,22) -358: cdims = (5 5 5) -358: ** Registration worker thread finished. -358: Writing transformation ... -358: Warping... -358: Running: plm_warp_native -358: Converting input image... -358: Converting xform... -358: bspline_xform_initialize -358: rdims = (2,2,2) -358: vox_per_rgn = (22,22,22) -358: cdims = (5 5 5) -358: Creating output vf... -358: Creating output volume... -358: Running native warper... -358: bspline_warp complete. -358: Back convert to original type... -358: > Convert vf to itk -358: > Conversion complete. -358: plm_warp_native is complete. -358: Saving image... -358: Trying to write image to plm-bsp-ushort-img.mha -358: Saving vf... -358: Trying to write image to plm-bsp-ushort-vf.mha -358: Load: 0.299164 -358: Run: 0.207344 -358: Save: 0.11209 -358: Total: 0.618598 -358: Finished! -358: -358: STDERR: -358: Not an error -118/578 Test #358: plm-bsp-ushort ........................ Passed 1.70 sec +117/578 Test #365: plm-bsp-char-output ................... Passed 1.07 sec test 403 Start 403: plm-bsp-dcos-e @@ -7190,91 +7145,94 @@ 400: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 400: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt 400: EXPECTED_ERRNO is -361: RETVAL: 0 -361: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha -361: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha -361: Launching registration worker thread -361: Inside registration worker thread -361: Doing registration stage -361: [1] xf_in->m_type = 0, xf_out->m_type = 0 -361: RESAMPLE 1 1: (2 2 2), (2 2 2) -361: RESAMPLE 1 1: (2 2 2), (2 2 2) -361: volume_calc_grad complete. -361: bspline_xform_initialize -361: rdims = (2,2,2) -361: vox_per_rgn = (11,11,11) -361: cdims = (5 5 5) -361: Algorithm flavor = h -361: Threading = 0 -361: >> Checking JH allocation -361: BSPLINE PARMS -361: max_its = 5 -361: max_feval = 5 -361: BSPLINE XFORM HEADER -361: vox_per_rgn = 11 11 11 -361: roi_offset = 0 0 0 -361: roi_dim = 19 19 19 -361: img_dc = 1 0 0 0 1 0 0 0 1 -361: BST METRICS -361: MET 110100 MSE 1.000000 -361: Setting nmax, mmax = 375 21 -361: >>> START -361: This problem is unconstrained. -361: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.016 s ] -361: CMIN 0.00 CAVG 0.00 CMAX 0.00 -361: LSD 0.00 -361: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.016 s ] -361: CMIN -0.07 CAVG 0.01 CMAX 0.68 -361: LSD 1.00 -361: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.021 s ] -361: CMIN -0.35 CAVG 0.05 CMAX 3.40 -361: LSD 5.00 -361: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.020 s ] -361: CMIN -1.48 CAVG 0.20 CMAX 14.26 -361: LSD 21.00 -361: [ 1, 4] MSE 3098.536 NV 5455 GM 1176.092 GN 399 [ 0.016 s ] -361: CMIN -1.74 CAVG 0.44 CMAX 32.50 -361: LSD 27.95 -361: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.021 s ] -361: CMIN -1.73 CAVG 0.34 CMAX 23.99 -361: LSD 13.11 -361: [2] xf_out->m_type = 9, xf_in->m_type = 0 -361: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -361: bspline_xform_initialize -361: rdims = (2,2,2) -361: vox_per_rgn = (22,22,22) -361: cdims = (5 5 5) -361: ** Registration worker thread finished. -361: Writing transformation ... -361: Warping... -361: Running: plm_warp_native -361: Converting input image... -361: Converting xform... -361: bspline_xform_initialize -361: rdims = (2,2,2) -361: vox_per_rgn = (22,22,22) -361: cdims = (5 5 5) -361: Creating output vf... -361: Creating output volume... -361: Running native warper... -361: bspline_warp complete. -361: Back convert to original type... -361: > Convert vf to itk -361: > Conversion complete. -361: plm_warp_native is complete. -361: Saving image... -361: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha -361: Saving vf... -361: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-vf.mha -361: Load: 0.248973 -361: Run: 0.170827 -361: Save: 0.105736 -361: Total: 0.525536 -361: Finished! -361: -361: STDERR: -361: Not an error -119/578 Test #361: plm-bsp-double ........................ Passed 1.58 sec +397: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +397: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt +397: EXPECTED_ERRNO is +351: RETVAL: 0 +351: STDOUT: Loading fixed image [0]: gauss-1.mha +351: Loading moving image [0]: gauss-2.mha +351: Launching registration worker thread +351: Inside registration worker thread +351: Doing registration stage +351: [1] xf_in->m_type = 0, xf_out->m_type = 0 +351: RESAMPLE 1 1: (2 2 2), (2 2 2) +351: RESAMPLE 1 1: (2 2 2), (2 2 2) +351: volume_calc_grad complete. +351: bspline_xform_initialize +351: rdims = (2,2,2) +351: vox_per_rgn = (11,11,11) +351: cdims = (5 5 5) +351: Algorithm flavor = g +351: Threading = 0 +351: >> Checking JH allocation +351: BSPLINE PARMS +351: max_its = 5 +351: max_feval = 5 +351: BSPLINE XFORM HEADER +351: vox_per_rgn = 11 11 11 +351: roi_offset = 0 0 0 +351: roi_dim = 19 19 19 +351: img_dc = 1 0 0 0 1 0 0 0 1 +351: BST METRICS +351: MET 110100 MSE 1.000000 +351: Setting nmax, mmax = 375 21 +351: >>> START +351: This problem is unconstrained. +351: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.042 s ] +351: CMIN 0.00 CAVG 0.00 CMAX 0.00 +351: LSD 0.00 +351: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.034 s ] +351: CMIN -0.07 CAVG 0.01 CMAX 0.68 +351: LSD 1.00 +351: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.019 s ] +351: CMIN -0.35 CAVG 0.05 CMAX 3.40 +351: LSD 5.00 +351: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.024 s ] +351: CMIN -1.48 CAVG 0.20 CMAX 14.26 +351: LSD 21.00 +351: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.052 s ] +351: CMIN -1.74 CAVG 0.44 CMAX 32.50 +351: LSD 27.95 +351: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.067 s ] +351: CMIN -1.73 CAVG 0.34 CMAX 23.99 +351: LSD 13.11 +351: [2] xf_out->m_type = 9, xf_in->m_type = 0 +351: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +351: bspline_xform_initialize +351: rdims = (2,2,2) +351: vox_per_rgn = (22,22,22) +351: cdims = (5 5 5) +351: ** Registration worker thread finished. +351: Writing transformation ... +351: Warping... +351: Running: plm_warp_native +351: Converting input image... +351: Converting xform... +351: bspline_xform_initialize +351: rdims = (2,2,2) +351: vox_per_rgn = (22,22,22) +351: cdims = (5 5 5) +351: Creating output vf... +351: Creating output volume... +351: Running native warper... +351: bspline_warp complete. +351: Back convert to original type... +351: > Convert vf to itk +351: > Conversion complete. +351: plm_warp_native is complete. +351: Saving image... +351: Trying to write image to plm-bsp-openmp-img.mha +351: Saving vf... +351: Trying to write image to plm-bsp-openmp-vf.mha +351: Load: 0.129946 +351: Run: 0.29979 +351: Save: 0.149549 +351: Total: 0.579285 +351: Finished! +351: +351: STDERR: +351: Not an error +118/578 Test #351: plm-bsp-openmp ........................ Passed 1.44 sec test 406 Start 406: plm-bsp-dcos-f @@ -7320,22 +7278,22 @@ 369: Setting nmax, mmax = 6591 83 369: >>> START 369: This problem is unconstrained. -369: [ 0, 0] MSE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.088 s ] +369: [ 0, 0] MSE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.089 s ] 369: CMIN 0.00 CAVG 0.00 CMAX 0.00 369: LSD 0.00 -369: [ 0, 1] MSE 5484.124 NV 54872 GM 0.045 GN 27.8 [ 0.063 s ] +369: [ 0, 1] MSE 5484.124 NV 54872 GM 0.045 GN 27.8 [ 0.060 s ] 369: CMIN -0.16 CAVG -0.00 CMAX 0.22 369: LSD 1.00 -369: [ 0, 2] MSE 5266.236 NV 54872 GM 0.224 GN 26.4 [ 0.048 s ] +369: [ 0, 2] MSE 5266.236 NV 54872 GM 0.224 GN 26.4 [ 0.090 s ] 369: CMIN -0.81 CAVG 0.00 CMAX 1.12 369: LSD 5.00 -369: [ 0, 3] MSE 4484.536 NV 54872 GM 0.928 GN 20.9 [ 0.036 s ] +369: [ 0, 3] MSE 4484.536 NV 54872 GM 0.928 GN 20.9 [ 0.064 s ] 369: CMIN -3.39 CAVG 0.00 CMAX 4.70 369: LSD 21.00 -369: [ 1, 4] MSE 2493.238 NV 54872 GM 0.677 GN 15.1 [ 0.049 s ] +369: [ 1, 4] MSE 2493.238 NV 54872 GM 0.677 GN 15.1 [ 0.043 s ] 369: CMIN -13.49 CAVG -0.00 CMAX 18.05 369: LSD 60.54 -369: [ 2, 5] MSE 4765.919 NV 54872 GM 81.679 GN 34.3 [ 0.022 s ] +369: [ 2, 5] MSE 4765.919 NV 54872 GM 81.679 GN 34.3 [ 0.043 s ] 369: CMIN -43.65 CAVG -0.01 CMAX 57.84 369: LSD 218.24 369: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -7361,248 +7319,354 @@ 369: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-img.mha 369: Saving vf... 369: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha -369: Load: 0.287142 -369: Run: 0.351823 -369: Save: 0.131571 -369: Total: 0.770536 +369: Load: 0.13608 +369: Run: 0.426456 +369: Save: 0.134272 +369: Total: 0.696808 369: Finished! 369: 369: STDERR: 369: Not an error -120/578 Test #369: plm-bsp-regularize-none ............... Passed 1.90 sec +119/578 Test #369: plm-bsp-regularize-none ............... Passed 1.34 sec test 409 Start 409: plm-reg-multi-a 409: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 409: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 409: Test timeout computed to be: 1500 -409: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -409: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt -409: EXPECTED_ERRNO is -379: RETVAL: 0 -379: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha -379: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha -379: Loading fixed landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv -379: Loading moving landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv -379: Launching registration worker thread -379: Inside registration worker thread -379: Doing registration stage -379: [1] xf_in->m_type = 0, xf_out->m_type = 0 -379: RESAMPLE 1 1: (2 2 2), (2 2 2) -379: RESAMPLE 1 1: (2 2 2), (2 2 2) -379: volume_calc_grad complete. -379: bspline_xform_initialize -379: Warning: vox_per_rgn was less than 4. -379: Warning: vox_per_rgn was less than 4. -379: Warning: vox_per_rgn was less than 4. -379: rdims = (5,5,5) -379: vox_per_rgn = (4,4,4) -379: cdims = (8 8 8) -379: Algorithm flavor = h -379: Threading = 0 -379: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 -379: >> Checking JH allocation -379: Computing landmark grid coordinates -379: image dc=-1 0 0 0 -1 0 0 0 1 -379: image or=250 250 -236.842 -379: image dm=19 19 19 -379: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000) -379: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008) -379: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008) -379: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008) -379: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000) -379: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981) -379: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981) -379: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981) -379: BSPLINE PARMS -379: max_its = 5 -379: max_feval = 5 -379: BSPLINE XFORM HEADER -379: vox_per_rgn = 4 4 4 -379: roi_offset = 0 0 0 -379: roi_dim = 19 19 19 -379: img_dc = -1 0 0 0 -1 0 0 0 1 -379: BST METRICS -379: MET 110100 MSE 1.000000 -379: Setting nmax, mmax = 1536 41 -379: >>> START -379: This problem is unconstrained. -379: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.025 s ] -379: MSE 1339.480 LM 446.242 -379: CMIN 0.00 CAVG 0.00 CMAX 0.00 -379: LSD 0.00 -379: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.028 s ] -379: MSE 1303.402 LM 437.384 -379: CMIN -0.03 CAVG 0.00 CMAX 0.57 -379: LSD 1.00 -379: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.021 s ] -379: MSE 1164.662 LM 402.938 -379: CMIN -0.17 CAVG 0.01 CMAX 2.86 -379: LSD 5.00 -379: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.017 s ] -379: MSE 698.326 LM 280.914 -379: CMIN -0.71 CAVG 0.05 CMAX 12.03 -379: LSD 21.00 -379: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.017 s ] -379: MSE 81.402 LM 37.433 -379: CMIN -1.76 CAVG 0.19 CMAX 39.56 -379: LSD 55.80 -379: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.023 s ] -379: MSE 47.343 LM 22.393 -379: CMIN -3.07 CAVG 0.19 CMAX 44.32 -379: LSD 10.82 -379: [2] xf_out->m_type = 9, xf_in->m_type = 0 -379: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -379: bspline_xform_initialize -379: rdims = (5,5,5) -379: vox_per_rgn = (8,8,8) -379: cdims = (8 8 8) -379: ** Registration worker thread finished. -379: Writing transformation ... -379: Warping... -379: Running: plm_warp_native -379: Converting input image... -379: Converting xform... -379: bspline_xform_initialize -379: rdims = (5,5,5) -379: vox_per_rgn = (8,8,8) -379: cdims = (8 8 8) -379: Creating output vf... -379: Creating output volume... -379: Running native warper... -379: bspline_warp complete. -379: Back convert to original type... -379: > Convert vf to itk -379: > Conversion complete. -379: plm_warp_native is complete. -379: Saving image... -379: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha -379: Saving warped landmarks... -379: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-warped.fcsv -379: Saving vf... -379: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-vf.mha -379: Load: 0.352127 -379: Run: 0.195635 -379: Save: 0.135152 -379: Total: 0.682914 -379: Finished! -379: -379: STDERR: -379: Not an error -121/578 Test #379: plm-bsp-landmark-b .................... Passed 1.67 sec -test 412 - Start 412: plm-reg-multi-b - -412: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -412: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -412: Test timeout computed to be: 1500 -412: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -412: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt -412: EXPECTED_ERRNO is -388: RETVAL: 0 -388: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha -388: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha -388: Loading fixed landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.txt -388: Error parsing fcsv file: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.txt -388: Loading moving landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.txt -388: Error parsing fcsv file: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.txt -388: Launching registration worker thread -388: Inside registration worker thread -388: Doing registration stage -388: [1] xf_in->m_type = 0, xf_out->m_type = 0 -388: RESAMPLE 1 1: (2 2 2), (2 2 2) -388: RESAMPLE 1 1: (2 2 2), (2 2 2) -388: volume_calc_grad complete. -388: bspline_xform_initialize -388: Warning: vox_per_rgn was less than 4. -388: Warning: vox_per_rgn was less than 4. -388: Warning: vox_per_rgn was less than 4. -388: rdims = (5,5,5) -388: vox_per_rgn = (4,4,4) -388: cdims = (8 8 8) -388: Algorithm flavor = h -388: Threading = 0 -388: Landmarks: 0 fixed, 0 moving, lambda = 1.000000 -388: >> Checking JH allocation -388: BSPLINE PARMS -388: max_its = 5 -388: max_feval = 5 -388: BSPLINE XFORM HEADER -388: vox_per_rgn = 4 4 4 -388: roi_offset = 0 0 0 -388: roi_dim = 19 19 19 -388: img_dc = -1 0 0 0 -1 0 0 0 1 -388: BST METRICS -388: MET 110100 MSE 1.000000 -388: Setting nmax, mmax = 1536 41 -388: >>> START -388: This problem is unconstrained. -388: [ 0, 0] MSE 1339.480 NV 6859 GM -84.834 GN 23.2 [ 0.013 s ] -388: CMIN 0.00 CAVG 0.00 CMAX 0.00 -388: LSD 0.00 -388: [ 0, 1] MSE 1303.294 NV 6859 GM -83.620 GN 22.8 [ 0.009 s ] -388: CMIN -0.04 CAVG 0.00 CMAX 0.59 -388: LSD 1.00 -388: [ 0, 2] MSE 1164.232 NV 6859 GM -78.768 GN 21.5 [ 0.013 s ] -388: CMIN -0.19 CAVG 0.01 CMAX 2.96 -388: LSD 5.00 -388: [ 0, 3] MSE 698.336 NV 6859 GM -59.420 GN 16.2 [ 0.009 s ] -388: CMIN -0.80 CAVG 0.05 CMAX 12.42 -388: LSD 21.00 -388: [ 1, 4] MSE 89.012 NV 6859 GM 0.171 GN 3.29 [ 0.017 s ] -388: CMIN -2.05 CAVG 0.17 CMAX 39.56 -388: LSD 52.33 -388: [ 2, 5] MSE 51.991 NV 6859 GM 2.502 GN 2.38 [ 0.012 s ] -388: CMIN -3.69 CAVG 0.18 CMAX 41.73 -388: LSD 11.03 -388: [2] xf_out->m_type = 9, xf_in->m_type = 0 -388: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -388: bspline_xform_initialize -388: rdims = (5,5,5) -388: vox_per_rgn = (8,8,8) -388: cdims = (8 8 8) -388: ** Registration worker thread finished. -388: Writing transformation ... -388: Warping... -388: Running: plm_warp_native -388: Converting input image... -388: Converting xform... -388: bspline_xform_initialize -388: rdims = (5,5,5) -388: vox_per_rgn = (8,8,8) -388: cdims = (8 8 8) -388: Creating output vf... -388: Creating output volume... -388: Running native warper... -388: bspline_warp complete. -388: Back convert to original type... -388: > Convert vf to itk -388: > Conversion complete. -388: plm_warp_native is complete. -388: Saving image... -388: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha -388: Saving warped landmarks... -388: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-warped.fcsv -388: Saving vf... -388: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-vf.mha -388: Load: 0.189564 -388: Run: 0.0993221 -388: Save: 0.126219 -388: Total: 0.415105 -388: Finished! -388: -388: STDERR: -388: Not an error -122/578 Test #388: plm-bsp-landmark-e .................... Passed 1.36 sec +385: RETVAL: 0 +385: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha +385: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha +385: Launching registration worker thread +385: Inside registration worker thread +385: Doing registration stage +385: [1] xf_in->m_type = 0, xf_out->m_type = 0 +385: RESAMPLE 1 1: (2 2 2), (2 2 2) +385: RESAMPLE 1 1: (2 2 2), (2 2 2) +385: volume_calc_grad complete. +385: bspline_xform_initialize +385: Warning: vox_per_rgn was less than 4. +385: Warning: vox_per_rgn was less than 4. +385: Warning: vox_per_rgn was less than 4. +385: rdims = (5,5,5) +385: vox_per_rgn = (4,4,4) +385: cdims = (8 8 8) +385: Algorithm flavor = h +385: Threading = 0 +385: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 +385: >> Checking JH allocation +385: Computing landmark grid coordinates +385: image dc=-1 0 0 0 -1 0 0 0 1 +385: image or=250 250 -236.842 +385: image dm=19 19 19 +385: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000) +385: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008) +385: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008) +385: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008) +385: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000) +385: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981) +385: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981) +385: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981) +385: BSPLINE PARMS +385: max_its = 5 +385: max_feval = 5 +385: BSPLINE XFORM HEADER +385: vox_per_rgn = 4 4 4 +385: roi_offset = 0 0 0 +385: roi_dim = 19 19 19 +385: img_dc = -1 0 0 0 -1 0 0 0 1 +385: BST METRICS +385: MET 110100 MSE 1.000000 +385: Setting nmax, mmax = 1536 41 +385: >>> START +385: This problem is unconstrained. +385: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.020 s ] +385: MSE 1339.480 LM 446.242 +385: CMIN 0.00 CAVG 0.00 CMAX 0.00 +385: LSD 0.00 +385: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.020 s ] +385: MSE 1303.402 LM 437.384 +385: CMIN -0.03 CAVG 0.00 CMAX 0.57 +385: LSD 1.00 +385: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.020 s ] +385: MSE 1164.662 LM 402.938 +385: CMIN -0.17 CAVG 0.01 CMAX 2.86 +385: LSD 5.00 +385: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.024 s ] +385: MSE 698.326 LM 280.914 +385: CMIN -0.71 CAVG 0.05 CMAX 12.03 +385: LSD 21.00 +385: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.016 s ] +385: MSE 81.402 LM 37.433 +385: CMIN -1.76 CAVG 0.19 CMAX 39.56 +385: LSD 55.80 +385: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.024 s ] +385: MSE 47.343 LM 22.393 +385: CMIN -3.07 CAVG 0.19 CMAX 44.32 +385: LSD 10.82 +385: [2] xf_out->m_type = 9, xf_in->m_type = 0 +385: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +385: bspline_xform_initialize +385: rdims = (5,5,5) +385: vox_per_rgn = (8,8,8) +385: cdims = (8 8 8) +385: ** Registration worker thread finished. +385: Writing transformation ... +385: Warping... +385: Running: plm_warp_native +385: Converting input image... +385: Converting xform... +385: bspline_xform_initialize +385: rdims = (5,5,5) +385: vox_per_rgn = (8,8,8) +385: cdims = (8 8 8) +385: Creating output vf... +385: Creating output volume... +385: Running native warper... +385: bspline_warp complete. +385: Back convert to original type... +385: > Convert vf to itk +385: > Conversion complete. +385: plm_warp_native is complete. +385: Saving image... +385: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha +385: Saving vf... +385: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-vf.mha +385: Load: 0.289776 +385: Run: 0.195838 +385: Save: 0.079092 +385: Total: 0.564706 +385: Finished! +385: +385: STDERR: +385: Not an error +120/578 Test #385: plm-bsp-landmark-d .................... Passed 1.10 sec +test 412 + Start 412: plm-reg-multi-b + +412: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +412: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +412: Test timeout computed to be: 1500 +361: RETVAL: 0 +361: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha +361: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha +361: Launching registration worker thread +361: Inside registration worker thread +361: Doing registration stage +361: [1] xf_in->m_type = 0, xf_out->m_type = 0 +361: RESAMPLE 1 1: (2 2 2), (2 2 2) +361: RESAMPLE 1 1: (2 2 2), (2 2 2) +361: volume_calc_grad complete. +361: bspline_xform_initialize +361: rdims = (2,2,2) +361: vox_per_rgn = (11,11,11) +361: cdims = (5 5 5) +361: Algorithm flavor = h +361: Threading = 0 +361: >> Checking JH allocation +361: BSPLINE PARMS +361: max_its = 5 +361: max_feval = 5 +361: BSPLINE XFORM HEADER +361: vox_per_rgn = 11 11 11 +361: roi_offset = 0 0 0 +361: roi_dim = 19 19 19 +361: img_dc = 1 0 0 0 1 0 0 0 1 +361: BST METRICS +361: MET 110100 MSE 1.000000 +361: Setting nmax, mmax = 375 21 +361: >>> START +361: This problem is unconstrained. +361: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.011 s ] +361: CMIN 0.00 CAVG 0.00 CMAX 0.00 +361: LSD 0.00 +361: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.018 s ] +361: CMIN -0.07 CAVG 0.01 CMAX 0.68 +361: LSD 1.00 +361: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.003 s ] +361: CMIN -0.35 CAVG 0.05 CMAX 3.40 +361: LSD 5.00 +361: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.019 s ] +361: CMIN -1.48 CAVG 0.20 CMAX 14.26 +361: LSD 21.00 +361: [ 1, 4] MSE 3098.536 NV 5455 GM 1176.092 GN 399 [ 0.011 s ] +361: CMIN -1.74 CAVG 0.44 CMAX 32.50 +361: LSD 27.95 +361: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.003 s ] +361: CMIN -1.73 CAVG 0.34 CMAX 23.99 +361: LSD 13.11 +361: [2] xf_out->m_type = 9, xf_in->m_type = 0 +361: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +361: bspline_xform_initialize +361: rdims = (2,2,2) +361: vox_per_rgn = (22,22,22) +361: cdims = (5 5 5) +361: ** Registration worker thread finished. +361: Writing transformation ... +361: Warping... +361: Running: plm_warp_native +361: Converting input image... +361: Converting xform... +361: bspline_xform_initialize +361: rdims = (2,2,2) +361: vox_per_rgn = (22,22,22) +361: cdims = (5 5 5) +361: Creating output vf... +361: Creating output volume... +361: Running native warper... +361: bspline_warp complete. +361: Back convert to original type... +361: > Convert vf to itk +361: > Conversion complete. +361: plm_warp_native is complete. +361: Saving image... +361: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha +361: Saving vf... +361: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-vf.mha +361: Load: 0.406243 +361: Run: 0.147947 +361: Save: 0.111426 +361: Total: 0.665616 +361: Finished! +361: +361: STDERR: +361: Not an error +121/578 Test #361: plm-bsp-double ........................ Passed 1.51 sec test 415 Start 415: plm-reg-dv-itk-translation 415: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 415: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 415: Test timeout computed to be: 1500 +409: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +409: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt +409: EXPECTED_ERRNO is +412: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +412: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt +412: EXPECTED_ERRNO is 415: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 415: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation.txt 415: EXPECTED_ERRNO is +379: RETVAL: 0 +379: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha +379: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha +379: Loading fixed landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv +379: Loading moving landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv +379: Launching registration worker thread +379: Inside registration worker thread +379: Doing registration stage +379: [1] xf_in->m_type = 0, xf_out->m_type = 0 +379: RESAMPLE 1 1: (2 2 2), (2 2 2) +379: RESAMPLE 1 1: (2 2 2), (2 2 2) +379: volume_calc_grad complete. +379: bspline_xform_initialize +379: Warning: vox_per_rgn was less than 4. +379: Warning: vox_per_rgn was less than 4. +379: Warning: vox_per_rgn was less than 4. +379: rdims = (5,5,5) +379: vox_per_rgn = (4,4,4) +379: cdims = (8 8 8) +379: Algorithm flavor = h +379: Threading = 0 +379: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 +379: >> Checking JH allocation +379: Computing landmark grid coordinates +379: image dc=-1 0 0 0 -1 0 0 0 1 +379: image or=250 250 -236.842 +379: image dm=19 19 19 +379: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000) +379: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008) +379: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008) +379: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008) +379: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000) +379: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981) +379: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981) +379: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981) +379: BSPLINE PARMS +379: max_its = 5 +379: max_feval = 5 +379: BSPLINE XFORM HEADER +379: vox_per_rgn = 4 4 4 +379: roi_offset = 0 0 0 +379: roi_dim = 19 19 19 +379: img_dc = -1 0 0 0 -1 0 0 0 1 +379: BST METRICS +379: MET 110100 MSE 1.000000 +379: Setting nmax, mmax = 1536 41 +379: >>> START +379: This problem is unconstrained. +379: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.004 s ] +379: MSE 1339.480 LM 446.242 +379: CMIN 0.00 CAVG 0.00 CMAX 0.00 +379: LSD 0.00 +379: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.004 s ] +379: MSE 1303.402 LM 437.384 +379: CMIN -0.03 CAVG 0.00 CMAX 0.57 +379: LSD 1.00 +379: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.024 s ] +379: MSE 1164.662 LM 402.938 +379: CMIN -0.17 CAVG 0.01 CMAX 2.86 +379: LSD 5.00 +379: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.020 s ] +379: MSE 698.326 LM 280.914 +379: CMIN -0.71 CAVG 0.05 CMAX 12.03 +379: LSD 21.00 +379: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.023 s ] +379: MSE 81.402 LM 37.433 +379: CMIN -1.76 CAVG 0.19 CMAX 39.56 +379: LSD 55.80 +379: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.036 s ] +379: MSE 47.343 LM 22.393 +379: CMIN -3.07 CAVG 0.19 CMAX 44.32 +379: LSD 10.82 +379: [2] xf_out->m_type = 9, xf_in->m_type = 0 +379: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +379: bspline_xform_initialize +379: rdims = (5,5,5) +379: vox_per_rgn = (8,8,8) +379: cdims = (8 8 8) +379: ** Registration worker thread finished. +379: Writing transformation ... +379: Warping... +379: Running: plm_warp_native +379: Converting input image... +379: Converting xform... +379: bspline_xform_initialize +379: rdims = (5,5,5) +379: vox_per_rgn = (8,8,8) +379: cdims = (8 8 8) +379: Creating output vf... +379: Creating output volume... +379: Running native warper... +379: bspline_warp complete. +379: Back convert to original type... +379: > Convert vf to itk +379: > Conversion complete. +379: plm_warp_native is complete. +379: Saving image... +379: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha +379: Saving warped landmarks... +379: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-warped.fcsv +379: Saving vf... +379: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-vf.mha +379: Load: 0.297504 +379: Run: 0.155432 +379: Save: 0.113772 +379: Total: 0.566708 +379: Finished! +379: +379: STDERR: +379: Not an error +122/578 Test #379: plm-bsp-landmark-b .................... Passed 1.40 sec +test 424 + Start 424: plm-reg-process-a + +424: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +424: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +424: Test timeout computed to be: 1500 +424: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +424: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt +424: EXPECTED_ERRNO is 382: RETVAL: 0 382: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha 382: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha @@ -7651,15 +7715,15 @@ 382: Setting nmax, mmax = 1536 41 382: >>> START 382: This problem is unconstrained. -382: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.033 s ] +382: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.042 s ] 382: MSE 1339.480 LM 446.242 382: CMIN 0.00 CAVG 0.00 CMAX 0.00 382: LSD 0.00 -382: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.021 s ] +382: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.020 s ] 382: MSE 1303.402 LM 437.384 382: CMIN -0.03 CAVG 0.00 CMAX 0.57 382: LSD 1.00 -382: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.021 s ] +382: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.020 s ] 382: MSE 1164.662 LM 402.938 382: CMIN -0.17 CAVG 0.01 CMAX 2.86 382: LSD 5.00 @@ -7667,11 +7731,11 @@ 382: MSE 698.326 LM 280.914 382: CMIN -0.71 CAVG 0.05 CMAX 12.03 382: LSD 21.00 -382: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.018 s ] +382: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.017 s ] 382: MSE 81.402 LM 37.433 382: CMIN -1.76 CAVG 0.19 CMAX 39.56 382: LSD 55.80 -382: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.021 s ] +382: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.016 s ] 382: MSE 47.343 LM 22.393 382: CMIN -3.07 CAVG 0.19 CMAX 44.32 382: LSD 10.82 @@ -7720,140 +7784,128 @@ 382: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha 382: Saving vf... 382: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-vf.mha -382: Load: 0.320621 -382: Run: 0.339941 -382: Save: 0.119452 -382: Total: 0.780014 +382: Load: 0.280858 +382: Run: 0.311869 +382: Save: 0.103808 +382: Total: 0.696535 382: Finished! 382: 382: STDERR: 382: Not an error -123/578 Test #382: plm-bsp-landmark-c .................... Passed 2.03 sec -test 424 - Start 424: plm-reg-process-a - -424: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -424: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -424: Test timeout computed to be: 1500 -385: RETVAL: 0 -385: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha -385: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha -385: Launching registration worker thread -385: Inside registration worker thread -385: Doing registration stage -385: [1] xf_in->m_type = 0, xf_out->m_type = 0 -385: RESAMPLE 1 1: (2 2 2), (2 2 2) -385: RESAMPLE 1 1: (2 2 2), (2 2 2) -385: volume_calc_grad complete. -385: bspline_xform_initialize -385: Warning: vox_per_rgn was less than 4. -385: Warning: vox_per_rgn was less than 4. -385: Warning: vox_per_rgn was less than 4. -385: rdims = (5,5,5) -385: vox_per_rgn = (4,4,4) -385: cdims = (8 8 8) -385: Algorithm flavor = h -385: Threading = 0 -385: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 -385: >> Checking JH allocation -385: Computing landmark grid coordinates -385: image dc=-1 0 0 0 -1 0 0 0 1 -385: image or=250 250 -236.842 -385: image dm=19 19 19 -385: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000) -385: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008) -385: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008) -385: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008) -385: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000) -385: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981) -385: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981) -385: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981) -385: BSPLINE PARMS -385: max_its = 5 -385: max_feval = 5 -385: BSPLINE XFORM HEADER -385: vox_per_rgn = 4 4 4 -385: roi_offset = 0 0 0 -385: roi_dim = 19 19 19 -385: img_dc = -1 0 0 0 -1 0 0 0 1 -385: BST METRICS -385: MET 110100 MSE 1.000000 -385: Setting nmax, mmax = 1536 41 -385: >>> START -385: This problem is unconstrained. -385: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.041 s ] -385: MSE 1339.480 LM 446.242 -385: CMIN 0.00 CAVG 0.00 CMAX 0.00 -385: LSD 0.00 -385: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.024 s ] -385: MSE 1303.402 LM 437.384 -385: CMIN -0.03 CAVG 0.00 CMAX 0.57 -385: LSD 1.00 -385: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.024 s ] -385: MSE 1164.662 LM 402.938 -385: CMIN -0.17 CAVG 0.01 CMAX 2.86 -385: LSD 5.00 -385: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.025 s ] -385: MSE 698.326 LM 280.914 -385: CMIN -0.71 CAVG 0.05 CMAX 12.03 -385: LSD 21.00 -385: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.013 s ] -385: MSE 81.402 LM 37.433 -385: CMIN -1.76 CAVG 0.19 CMAX 39.56 -385: LSD 55.80 -385: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.041 s ] -385: MSE 47.343 LM 22.393 -385: CMIN -3.07 CAVG 0.19 CMAX 44.32 -385: LSD 10.82 -385: [2] xf_out->m_type = 9, xf_in->m_type = 0 -385: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -385: bspline_xform_initialize -385: rdims = (5,5,5) -385: vox_per_rgn = (8,8,8) -385: cdims = (8 8 8) -385: ** Registration worker thread finished. -385: Writing transformation ... -385: Warping... -385: Running: plm_warp_native -385: Converting input image... -385: Converting xform... -385: bspline_xform_initialize -385: rdims = (5,5,5) -385: vox_per_rgn = (8,8,8) -385: cdims = (8 8 8) -385: Creating output vf... -385: Creating output volume... -385: Running native warper... -385: bspline_warp complete. -385: Back convert to original type... -385: > Convert vf to itk -385: > Conversion complete. -385: plm_warp_native is complete. -385: Saving image... -385: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha -385: Saving vf... -385: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-vf.mha -385: Load: 0.267662 -385: Run: 0.228756 -385: Save: 0.117974 -385: Total: 0.614392 -385: Finished! -385: -385: STDERR: -385: Not an error -124/578 Test #385: plm-bsp-landmark-d .................... Passed 1.77 sec +123/578 Test #382: plm-bsp-landmark-c .................... Passed 1.58 sec test 427 Start 427: plm-reg-trans-a 427: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 427: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 427: Test timeout computed to be: 1500 -424: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -424: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt -424: EXPECTED_ERRNO is 427: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 427: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.txt 427: EXPECTED_ERRNO is +388: RETVAL: 0 +388: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha +388: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha +388: Loading fixed landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.txt +388: Error parsing fcsv file: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.txt +388: Loading moving landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.txt +388: Error parsing fcsv file: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.txt +388: Launching registration worker thread +388: Inside registration worker thread +388: Doing registration stage +388: [1] xf_in->m_type = 0, xf_out->m_type = 0 +388: RESAMPLE 1 1: (2 2 2), (2 2 2) +388: RESAMPLE 1 1: (2 2 2), (2 2 2) +388: volume_calc_grad complete. +388: bspline_xform_initialize +388: Warning: vox_per_rgn was less than 4. +388: Warning: vox_per_rgn was less than 4. +388: Warning: vox_per_rgn was less than 4. +388: rdims = (5,5,5) +388: vox_per_rgn = (4,4,4) +388: cdims = (8 8 8) +388: Algorithm flavor = h +388: Threading = 0 +388: Landmarks: 0 fixed, 0 moving, lambda = 1.000000 +388: >> Checking JH allocation +388: BSPLINE PARMS +388: max_its = 5 +388: max_feval = 5 +388: BSPLINE XFORM HEADER +388: vox_per_rgn = 4 4 4 +388: roi_offset = 0 0 0 +388: roi_dim = 19 19 19 +388: img_dc = -1 0 0 0 -1 0 0 0 1 +388: BST METRICS +388: MET 110100 MSE 1.000000 +388: Setting nmax, mmax = 1536 41 +388: >>> START +388: This problem is unconstrained. +388: [ 0, 0] MSE 1339.480 NV 6859 GM -84.834 GN 23.2 [ 0.012 s ] +388: CMIN 0.00 CAVG 0.00 CMAX 0.00 +388: LSD 0.00 +388: [ 0, 1] MSE 1303.294 NV 6859 GM -83.620 GN 22.8 [ 0.012 s ] +388: CMIN -0.04 CAVG 0.00 CMAX 0.59 +388: LSD 1.00 +388: [ 0, 2] MSE 1164.232 NV 6859 GM -78.768 GN 21.5 [ 0.013 s ] +388: CMIN -0.19 CAVG 0.01 CMAX 2.96 +388: LSD 5.00 +388: [ 0, 3] MSE 698.336 NV 6859 GM -59.420 GN 16.2 [ 0.012 s ] +388: CMIN -0.80 CAVG 0.05 CMAX 12.42 +388: LSD 21.00 +388: [ 1, 4] MSE 89.012 NV 6859 GM 0.171 GN 3.29 [ 0.016 s ] +388: CMIN -2.05 CAVG 0.17 CMAX 39.56 +388: LSD 52.33 +388: [ 2, 5] MSE 51.991 NV 6859 GM 2.502 GN 2.38 [ 0.016 s ] +388: CMIN -3.69 CAVG 0.18 CMAX 41.73 +388: LSD 11.03 +388: [2] xf_out->m_type = 9, xf_in->m_type = 0 +388: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +388: bspline_xform_initialize +388: rdims = (5,5,5) +388: vox_per_rgn = (8,8,8) +388: cdims = (8 8 8) +388: ** Registration worker thread finished. +388: Writing transformation ... +388: Warping... +388: Running: plm_warp_native +388: Converting input image... +388: Converting xform... +388: bspline_xform_initialize +388: rdims = (5,5,5) +388: vox_per_rgn = (8,8,8) +388: cdims = (8 8 8) +388: Creating output vf... +388: Creating output volume... +388: Running native warper... +388: bspline_warp complete. +388: Back convert to original type... +388: > Convert vf to itk +388: > Conversion complete. +388: plm_warp_native is complete. +388: Saving image... +388: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha +388: Saving warped landmarks... +388: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-warped.fcsv +388: Saving vf... +388: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-vf.mha +388: Load: 0.275694 +388: Run: 0.135367 +388: Save: 0.10203 +388: Total: 0.513091 +388: Finished! +388: +388: STDERR: +388: Not an error +124/578 Test #388: plm-bsp-landmark-e .................... Passed 1.59 sec +test 430 + Start 430: plm-reg-trans-b + +430: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +430: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +430: Test timeout computed to be: 1500 +430: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +430: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt +430: EXPECTED_ERRNO is 372: RETVAL: 0 372: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 372: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha @@ -7889,28 +7941,28 @@ 372: Setting nmax, mmax = 6591 83 372: >>> START 372: This problem is unconstrained. -372: [ 0, 0] SCORE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.287 s ] -372: MSE 5540.166 RM 0.000 [ 0.058 | 0.230 ] +372: [ 0, 0] SCORE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.345 s ] +372: MSE 5540.166 RM 0.000 [ 0.126 | 0.219 ] 372: CMIN 0.00 CAVG 0.00 CMAX 0.00 372: LSD 0.00 -372: [ 0, 1] SCORE 5484.176 NV 54872 GM 0.045 GN 27.7 [ 0.307 s ] -372: MSE 5484.124 RM 0.052 [ 0.063 | 0.245 ] +372: [ 0, 1] SCORE 5484.176 NV 54872 GM 0.045 GN 27.7 [ 0.241 s ] +372: MSE 5484.124 RM 0.052 [ 0.021 | 0.220 ] 372: CMIN -0.16 CAVG -0.00 CMAX 0.22 372: LSD 1.00 -372: [ 0, 2] SCORE 5267.543 NV 54872 GM 0.224 GN 25.9 [ 0.261 s ] -372: MSE 5266.236 RM 1.307 [ 0.043 | 0.218 ] +372: [ 0, 2] SCORE 5267.543 NV 54872 GM 0.224 GN 25.9 [ 0.216 s ] +372: MSE 5266.236 RM 1.307 [ 0.031 | 0.185 ] 372: CMIN -0.81 CAVG 0.00 CMAX 1.12 372: LSD 5.00 -372: [ 0, 3] SCORE 4507.597 NV 54872 GM 0.928 GN 18.7 [ 0.250 s ] -372: MSE 4484.536 RM 23.060 [ 0.048 | 0.202 ] +372: [ 0, 3] SCORE 4507.597 NV 54872 GM 0.928 GN 18.7 [ 0.196 s ] +372: MSE 4484.536 RM 23.060 [ 0.031 | 0.165 ] 372: CMIN -3.39 CAVG 0.00 CMAX 4.70 372: LSD 21.00 -372: [ 1, 4] SCORE 3149.129 NV 54872 GM 4.968 GN 2.36 [ 0.303 s ] -372: MSE 2955.678 RM 193.451 [ 0.059 | 0.243 ] +372: [ 1, 4] SCORE 3149.129 NV 54872 GM 4.968 GN 2.36 [ 0.211 s ] +372: MSE 2955.678 RM 193.451 [ 0.038 | 0.173 ] 372: CMIN -10.06 CAVG -0.00 CMAX 13.65 372: LSD 42.53 -372: [ 2, 5] SCORE 3079.150 NV 54872 GM -1.061 GN 2.72 [ 0.309 s ] -372: MSE 2880.344 RM 198.806 [ 0.035 | 0.274 ] +372: [ 2, 5] SCORE 3079.150 NV 54872 GM -1.061 GN 2.72 [ 0.199 s ] +372: MSE 2880.344 RM 198.806 [ 0.031 | 0.168 ] 372: CMIN -10.75 CAVG -0.00 CMAX 13.43 372: LSD 6.23 372: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -7936,21 +7988,215 @@ 372: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-img.mha 372: Saving vf... 372: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha -372: Load: 0.195891 -372: Run: 1.75987 -372: Save: 0.139565 -372: Total: 2.09532 +372: Load: 0.201646 +372: Run: 1.47181 +372: Save: 0.107466 +372: Total: 1.78092 372: Finished! 372: 372: STDERR: 372: Not an error -125/578 Test #372: plm-bsp-regularize-analytic ........... Passed 2.76 sec -test 430 - Start 430: plm-reg-trans-b +125/578 Test #372: plm-bsp-regularize-analytic ........... Passed 2.41 sec +test 433 + Start 433: plm-reg-trans-mi-a -430: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -430: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -430: Test timeout computed to be: 1500 +433: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +433: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +433: Test timeout computed to be: 1500 +391: RETVAL: 0 +391: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +391: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha +391: Launching registration worker thread +391: Inside registration worker thread +391: Doing registration stage +391: [1] xf_in->m_type = 0, xf_out->m_type = 0 +391: RESAMPLE 1 1: (2 2 2), (2 2 2) +391: RESAMPLE 1 1: (2 2 2), (2 2 2) +391: volume_calc_grad complete. +391: bspline_xform_initialize +391: Warning: vox_per_rgn was less than 4. +391: Warning: vox_per_rgn was less than 4. +391: Warning: vox_per_rgn was less than 4. +391: rdims = (5,5,5) +391: vox_per_rgn = (4,4,4) +391: cdims = (8 8 8) +391: Algorithm flavor = g +391: Threading = 0 +391: >> Checking JH allocation +391: BSPLINE PARMS +391: max_its = 5 +391: max_feval = 5 +391: BSPLINE XFORM HEADER +391: vox_per_rgn = 4 4 4 +391: roi_offset = 0 0 0 +391: roi_dim = 19 19 19 +391: img_dc = 1 0 0 0 1 0 0 0 1 +391: BST METRICS +391: MET 110100 MSE 1.000000 +391: Setting nmax, mmax = 1536 41 +391: >>> START +391: This problem is unconstrained. +391: [ 0, 0] MSE 1969.037 NV 5719 GM 151.518 GN 29 [ 0.080 s ] +391: CMIN 0.00 CAVG 0.00 CMAX 0.00 +391: LSD 0.00 +391: [ 0, 1] MSE 1948.891 NV 5719 GM 150.797 GN 28.8 [ 0.043 s ] +391: CMIN -0.42 CAVG -0.00 CMAX 0.04 +391: LSD 1.00 +391: [ 0, 2] MSE 1873.200 NV 5719 GM 152.313 GN 29.2 [ 0.032 s ] +391: CMIN -2.08 CAVG -0.02 CMAX 0.22 +391: LSD 5.00 +391: [ 0, 3] MSE 1636.130 NV 5719 GM 148.988 GN 28.8 [ 0.016 s ] +391: CMIN -8.76 CAVG -0.07 CMAX 0.93 +391: LSD 21.00 +391: [ 0, 4] MSE 1351.434 NV 5719 GM 79.112 GN 23.8 [ 0.032 s ] +391: CMIN -35.44 CAVG -0.29 CMAX 3.78 +391: LSD 85.00 +391: [ 1, 5] MSE 6291.438 NV 5719 GM -73.340 GN 33.2 [ 0.050 s ] +391: CMIN -126.28 CAVG -0.93 CMAX 14.98 +391: LSD 199.65 +391: [2] xf_out->m_type = 9, xf_in->m_type = 0 +391: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +391: bspline_xform_initialize +391: rdims = (5,5,5) +391: vox_per_rgn = (8,8,8) +391: cdims = (8 8 8) +391: ** Registration worker thread finished. +391: Writing transformation ... +391: Warping... +391: Running: plm_warp_native +391: Converting input image... +391: Converting xform... +391: bspline_xform_initialize +391: rdims = (5,5,5) +391: vox_per_rgn = (8,8,8) +391: cdims = (8 8 8) +391: Creating output vf... +391: Creating output volume... +391: Running native warper... +391: bspline_warp complete. +391: Back convert to original type... +391: > Convert vf to itk +391: > Conversion complete. +391: plm_warp_native is complete. +391: Saving image... +391: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd +391: Saving vf... +391: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-vf.nrrd +391: Load: 0.216042 +391: Run: 0.284065 +391: Save: 0.332609 +391: Total: 0.832716 +391: Finished! +391: +391: STDERR: +391: Not an error +126/578 Test #391: plm-bsp-dcos-a ........................ Passed 1.93 sec +test 436 + Start 436: plm-reg-autores-a + +436: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +436: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +436: Test timeout computed to be: 1500 +433: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +433: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt +433: EXPECTED_ERRNO is +436: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +436: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt +436: EXPECTED_ERRNO is +400: RETVAL: 0 +400: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha +400: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +400: Launching registration worker thread +400: Inside registration worker thread +400: Doing registration stage +400: [1] xf_in->m_type = 0, xf_out->m_type = 0 +400: RESAMPLE 1 1: (2 2 2), (2 2 2) +400: RESAMPLE 1 1: (2 2 2), (2 2 2) +400: volume_calc_grad complete. +400: bspline_xform_initialize +400: Warning: vox_per_rgn was less than 4. +400: Warning: vox_per_rgn was less than 4. +400: Warning: vox_per_rgn was less than 4. +400: rdims = (5,5,5) +400: vox_per_rgn = (4,4,4) +400: cdims = (8 8 8) +400: Algorithm flavor = c +400: Threading = 0 +400: >> Checking JH allocation +400: BSPLINE PARMS +400: max_its = 5 +400: max_feval = 5 +400: BSPLINE XFORM HEADER +400: vox_per_rgn = 4 4 4 +400: roi_offset = 0 0 0 +400: roi_dim = 19 19 19 +400: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 +400: BST METRICS +400: MET 110100 MSE 1.000000 +400: Setting nmax, mmax = 1536 41 +400: >>> START +400: This problem is unconstrained. +400: [ 0, 0] MSE 2326.658 NV 5814 GM -90.046 GN 30.1 [ 0.019 s ] +400: CMIN 0.00 CAVG 0.00 CMAX 0.00 +400: LSD 0.00 +400: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.015 s ] +400: CMIN -0.09 CAVG 0.00 CMAX 0.49 +400: LSD 1.00 +400: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.023 s ] +400: CMIN -0.46 CAVG 0.01 CMAX 2.46 +400: LSD 5.00 +400: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.003 s ] +400: CMIN -1.93 CAVG 0.04 CMAX 10.33 +400: LSD 21.00 +400: [ 1, 4] MSE 880.230 NV 5809 GM 22.704 GN 11.1 [ 0.023 s ] +400: CMIN -14.50 CAVG 0.20 CMAX 61.00 +400: LSD 95.90 +400: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.023 s ] +400: CMIN -12.15 CAVG 0.16 CMAX 47.74 +400: LSD 26.24 +400: [2] xf_out->m_type = 9, xf_in->m_type = 0 +400: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +400: bspline_xform_initialize +400: rdims = (5,5,5) +400: vox_per_rgn = (8,8,8) +400: cdims = (8 8 8) +400: ** Registration worker thread finished. +400: Writing transformation ... +400: Warping... +400: Running: plm_warp_native +400: Converting input image... +400: Converting xform... +400: bspline_xform_initialize +400: rdims = (5,5,5) +400: vox_per_rgn = (8,8,8) +400: cdims = (8 8 8) +400: Creating output vf... +400: Creating output volume... +400: Running native warper... +400: bspline_warp complete. +400: Back convert to original type... +400: > Convert vf to itk +400: > Conversion complete. +400: plm_warp_native is complete. +400: Saving image... +400: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd +400: Saving vf... +400: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-vf.nrrd +400: Load: 0.256374 +400: Run: 0.155788 +400: Save: 0.27717 +400: Total: 0.689332 +400: Finished! +400: +400: STDERR: +400: Not an error +127/578 Test #400: plm-bsp-dcos-d ........................ Passed 1.69 sec +test 439 + Start 439: plm-reg-autores-b + +439: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +439: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +439: Test timeout computed to be: 1500 397: RETVAL: 0 397: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 397: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha @@ -7984,22 +8230,22 @@ 397: Setting nmax, mmax = 1536 41 397: >>> START 397: This problem is unconstrained. -397: [ 0, 0] MSE 1969.041 NV 5719 GM 151.518 GN 29 [ 0.024 s ] +397: [ 0, 0] MSE 1969.041 NV 5719 GM 151.518 GN 29 [ 0.008 s ] 397: CMIN 0.00 CAVG 0.00 CMAX 0.00 397: LSD 0.00 -397: [ 0, 1] MSE 1948.894 NV 5719 GM 150.797 GN 28.8 [ 0.017 s ] +397: [ 0, 1] MSE 1948.894 NV 5719 GM 150.797 GN 28.8 [ 0.003 s ] 397: CMIN -0.42 CAVG -0.00 CMAX 0.04 397: LSD 1.00 -397: [ 0, 2] MSE 1873.203 NV 5719 GM 152.313 GN 29.2 [ 0.036 s ] +397: [ 0, 2] MSE 1873.203 NV 5719 GM 152.313 GN 29.2 [ 0.005 s ] 397: CMIN -2.08 CAVG -0.02 CMAX 0.22 397: LSD 5.00 -397: [ 0, 3] MSE 1636.132 NV 5719 GM 148.988 GN 28.8 [ 0.024 s ] +397: [ 0, 3] MSE 1636.132 NV 5719 GM 148.988 GN 28.8 [ 0.003 s ] 397: CMIN -8.76 CAVG -0.07 CMAX 0.93 397: LSD 21.00 -397: [ 0, 4] MSE 1351.435 NV 5719 GM 79.113 GN 23.8 [ 0.016 s ] +397: [ 0, 4] MSE 1351.435 NV 5719 GM 79.113 GN 23.8 [ 0.004 s ] 397: CMIN -35.44 CAVG -0.29 CMAX 3.78 397: LSD 85.00 -397: [ 1, 5] MSE 6291.440 NV 5719 GM -73.340 GN 33.2 [ 0.024 s ] +397: [ 1, 5] MSE 6291.440 NV 5719 GM -73.340 GN 33.2 [ 0.011 s ] 397: CMIN -126.28 CAVG -0.93 CMAX 14.98 397: LSD 199.65 397: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -8030,27 +8276,139 @@ 397: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd 397: Saving vf... 397: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-vf.nrrd -397: Load: 0.28396 -397: Run: 0.189609 -397: Save: 0.405763 -397: Total: 0.879332 +397: Load: 0.194744 +397: Run: 0.097986 +397: Save: 0.380369 +397: Total: 0.673099 397: Finished! 397: 397: STDERR: 397: Not an error -126/578 Test #397: plm-bsp-dcos-c ........................ Passed 1.95 sec -test 433 - Start 433: plm-reg-trans-mi-a +424: RETVAL: 0 +424: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +424: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +424: Launching registration worker thread +424: Inside registration worker thread +424: *** Executing adjust process *** +424: ** Registration worker thread finished. +424: Warping... +424: plm_warp_itk: xform_to_itk_vf +424: plm_warp_itk: convert_to_itk +424: plm_warp_itk: warping... +424: Saving image... +424: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha +424: Load: 0.140743 +424: Run: 0.0149491 +424: Save: 0.013351 +424: Total: 0.169043 +424: Finished! +424: +424: STDERR: +424: Not an error +128/578 Test #397: plm-bsp-dcos-c ........................ Passed 1.74 sec +test 444 + Start 444: plm-compose-a -433: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -433: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -433: Test timeout computed to be: 1500 -430: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -430: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt -430: EXPECTED_ERRNO is -433: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -433: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt -433: EXPECTED_ERRNO is +444: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +444: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +444: Test timeout computed to be: 1500 +129/578 Test #424: plm-reg-process-a ..................... Passed 1.07 sec +test 448 + Start 448: plm-compose-b + +448: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +448: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +448: Test timeout computed to be: 1500 +439: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +439: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt +439: EXPECTED_ERRNO is +406: RETVAL: 0 +406: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha +406: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +406: Launching registration worker thread +406: Inside registration worker thread +406: Doing registration stage +406: [1] xf_in->m_type = 0, xf_out->m_type = 0 +406: RESAMPLE 1 1: (2 2 2), (2 2 2) +406: RESAMPLE 1 1: (2 2 2), (2 2 2) +406: volume_calc_grad complete. +406: bspline_xform_initialize +406: Warning: vox_per_rgn was less than 4. +406: Warning: vox_per_rgn was less than 4. +406: Warning: vox_per_rgn was less than 4. +406: rdims = (5,5,5) +406: vox_per_rgn = (4,4,4) +406: cdims = (8 8 8) +406: Algorithm flavor = h +406: Threading = 0 +406: >> Checking JH allocation +406: BSPLINE PARMS +406: max_its = 5 +406: max_feval = 5 +406: BSPLINE XFORM HEADER +406: vox_per_rgn = 4 4 4 +406: roi_offset = 0 0 0 +406: roi_dim = 19 19 19 +406: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 +406: BST METRICS +406: MET 110100 MSE 1.000000 +406: Setting nmax, mmax = 1536 41 +406: >>> START +406: This problem is unconstrained. +406: [ 0, 0] MSE 2326.657 NV 5814 GM -90.046 GN 30.1 [ 0.020 s ] +406: CMIN 0.00 CAVG 0.00 CMAX 0.00 +406: LSD 0.00 +406: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.024 s ] +406: CMIN -0.09 CAVG 0.00 CMAX 0.49 +406: LSD 1.00 +406: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.024 s ] +406: CMIN -0.46 CAVG 0.01 CMAX 2.46 +406: LSD 5.00 +406: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.023 s ] +406: CMIN -1.93 CAVG 0.04 CMAX 10.33 +406: LSD 21.00 +406: [ 1, 4] MSE 880.232 NV 5809 GM 22.704 GN 11.1 [ 0.023 s ] +406: CMIN -14.50 CAVG 0.20 CMAX 61.00 +406: LSD 95.90 +406: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.023 s ] +406: CMIN -12.15 CAVG 0.16 CMAX 47.74 +406: LSD 26.24 +406: [2] xf_out->m_type = 9, xf_in->m_type = 0 +406: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +406: bspline_xform_initialize +406: rdims = (5,5,5) +406: vox_per_rgn = (8,8,8) +406: cdims = (8 8 8) +406: ** Registration worker thread finished. +406: Writing transformation ... +406: Warping... +406: Running: plm_warp_native +406: Converting input image... +406: Converting xform... +406: bspline_xform_initialize +406: rdims = (5,5,5) +406: vox_per_rgn = (8,8,8) +406: cdims = (8 8 8) +406: Creating output vf... +406: Creating output volume... +406: Running native warper... +406: bspline_warp complete. +406: Back convert to original type... +406: > Convert vf to itk +406: > Conversion complete. +406: plm_warp_native is complete. +406: Saving image... +406: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd +406: Saving vf... +406: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-vf.nrrd +406: Load: 0.230342 +406: Run: 0.176022 +406: Save: 0.189683 +406: Total: 0.596047 +406: Finished! +406: +406: STDERR: +406: Not an error 403: RETVAL: 0 403: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 403: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha @@ -8084,22 +8442,22 @@ 403: Setting nmax, mmax = 1536 41 403: >>> START 403: This problem is unconstrained. -403: [ 0, 0] MSE 1969.037 NV 5719 GM 151.518 GN 29 [ 0.028 s ] +403: [ 0, 0] MSE 1969.037 NV 5719 GM 151.518 GN 29 [ 0.020 s ] 403: CMIN 0.00 CAVG 0.00 CMAX 0.00 403: LSD 0.00 -403: [ 0, 1] MSE 1948.891 NV 5719 GM 150.797 GN 28.8 [ 0.028 s ] +403: [ 0, 1] MSE 1948.891 NV 5719 GM 150.797 GN 28.8 [ 0.015 s ] 403: CMIN -0.42 CAVG -0.00 CMAX 0.04 403: LSD 1.00 -403: [ 0, 2] MSE 1873.200 NV 5719 GM 152.313 GN 29.2 [ 0.036 s ] +403: [ 0, 2] MSE 1873.200 NV 5719 GM 152.313 GN 29.2 [ 0.003 s ] 403: CMIN -2.08 CAVG -0.02 CMAX 0.22 403: LSD 5.00 -403: [ 0, 3] MSE 1636.130 NV 5719 GM 148.988 GN 28.8 [ 0.037 s ] +403: [ 0, 3] MSE 1636.130 NV 5719 GM 148.988 GN 28.8 [ 0.023 s ] 403: CMIN -8.76 CAVG -0.07 CMAX 0.93 403: LSD 21.00 -403: [ 0, 4] MSE 1351.434 NV 5719 GM 79.112 GN 23.8 [ 0.010 s ] +403: [ 0, 4] MSE 1351.434 NV 5719 GM 79.112 GN 23.8 [ 0.019 s ] 403: CMIN -35.44 CAVG -0.29 CMAX 3.78 403: LSD 85.00 -403: [ 1, 5] MSE 6291.438 NV 5719 GM -73.340 GN 33.2 [ 0.004 s ] +403: [ 1, 5] MSE 6291.438 NV 5719 GM -73.340 GN 33.2 [ 0.023 s ] 403: CMIN -126.28 CAVG -0.93 CMAX 14.98 403: LSD 199.65 403: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -8130,21 +8488,13 @@ 403: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd 403: Saving vf... 403: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-vf.nrrd -403: Load: 0.197932 -403: Run: 0.211479 -403: Save: 0.235907 -403: Total: 0.645318 +403: Load: 0.269019 +403: Run: 0.183718 +403: Save: 0.274171 +403: Total: 0.726908 403: Finished! 403: 403: STDERR: -403: Not an error -127/578 Test #403: plm-bsp-dcos-e ........................ Passed 1.80 sec -test 436 - Start 436: plm-reg-autores-a - -436: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -436: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -436: Test timeout computed to be: 1500 394: RETVAL: 0 394: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha 394: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha @@ -8178,22 +8528,22 @@ 394: Setting nmax, mmax = 1536 41 394: >>> START 394: This problem is unconstrained. -394: [ 0, 0] MSE 2326.657 NV 5814 GM -90.046 GN 30.1 [ 0.073 s ] +394: [ 0, 0] MSE 2326.657 NV 5814 GM -90.046 GN 30.1 [ 0.081 s ] 394: CMIN 0.00 CAVG 0.00 CMAX 0.00 394: LSD 0.00 -394: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.055 s ] +394: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.048 s ] 394: CMIN -0.09 CAVG 0.00 CMAX 0.49 394: LSD 1.00 -394: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.066 s ] +394: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.080 s ] 394: CMIN -0.46 CAVG 0.01 CMAX 2.46 394: LSD 5.00 -394: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.046 s ] +394: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.064 s ] 394: CMIN -1.93 CAVG 0.04 CMAX 10.33 394: LSD 21.00 -394: [ 1, 4] MSE 880.232 NV 5809 GM 22.704 GN 11.1 [ 0.024 s ] +394: [ 1, 4] MSE 880.232 NV 5809 GM 22.704 GN 11.1 [ 0.064 s ] 394: CMIN -14.50 CAVG 0.20 CMAX 61.00 394: LSD 95.90 -394: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.063 s ] +394: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.023 s ] 394: CMIN -12.15 CAVG 0.16 CMAX 47.74 394: LSD 26.24 394: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -8224,382 +8574,51 @@ 394: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd 394: Saving vf... 394: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-vf.nrrd -394: Load: 0.254555 -394: Run: 0.36309 -394: Save: 0.237542 -394: Total: 0.855187 +394: Load: 0.262331 +394: Run: 0.396482 +394: Save: 0.154154 +394: Total: 0.812967 394: Finished! 394: 394: STDERR: 394: Not an error -128/578 Test #394: plm-bsp-dcos-b ........................ Passed 2.10 sec -test 439 - Start 439: plm-reg-autores-b - -439: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -439: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -439: Test timeout computed to be: 1500 -436: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -436: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt -436: EXPECTED_ERRNO is -391: RETVAL: 0 -391: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -391: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha -391: Launching registration worker thread -391: Inside registration worker thread -391: Doing registration stage -391: [1] xf_in->m_type = 0, xf_out->m_type = 0 -391: RESAMPLE 1 1: (2 2 2), (2 2 2) -391: RESAMPLE 1 1: (2 2 2), (2 2 2) -391: volume_calc_grad complete. -391: bspline_xform_initialize -391: Warning: vox_per_rgn was less than 4. -391: Warning: vox_per_rgn was less than 4. -391: Warning: vox_per_rgn was less than 4. -391: rdims = (5,5,5) -391: vox_per_rgn = (4,4,4) -391: cdims = (8 8 8) -391: Algorithm flavor = g -391: Threading = 0 -391: >> Checking JH allocation -391: BSPLINE PARMS -391: max_its = 5 -391: max_feval = 5 -391: BSPLINE XFORM HEADER -391: vox_per_rgn = 4 4 4 -391: roi_offset = 0 0 0 -391: roi_dim = 19 19 19 -391: img_dc = 1 0 0 0 1 0 0 0 1 -391: BST METRICS -391: MET 110100 MSE 1.000000 -391: Setting nmax, mmax = 1536 41 -391: >>> START -391: This problem is unconstrained. -391: [ 0, 0] MSE 1969.037 NV 5719 GM 151.518 GN 29 [ 0.092 s ] -391: CMIN 0.00 CAVG 0.00 CMAX 0.00 -391: LSD 0.00 -391: [ 0, 1] MSE 1948.891 NV 5719 GM 150.797 GN 28.8 [ 0.064 s ] -391: CMIN -0.42 CAVG -0.00 CMAX 0.04 -391: LSD 1.00 -391: [ 0, 2] MSE 1873.200 NV 5719 GM 152.313 GN 29.2 [ 0.048 s ] -391: CMIN -2.08 CAVG -0.02 CMAX 0.22 -391: LSD 5.00 -391: [ 0, 3] MSE 1636.130 NV 5719 GM 148.988 GN 28.8 [ 0.036 s ] -391: CMIN -8.76 CAVG -0.07 CMAX 0.93 -391: LSD 21.00 -391: [ 0, 4] MSE 1351.434 NV 5719 GM 79.112 GN 23.8 [ 0.072 s ] -391: CMIN -35.44 CAVG -0.29 CMAX 3.78 -391: LSD 85.00 -391: [ 1, 5] MSE 6291.438 NV 5719 GM -73.340 GN 33.2 [ 0.068 s ] -391: CMIN -126.28 CAVG -0.93 CMAX 14.98 -391: LSD 199.65 -391: [2] xf_out->m_type = 9, xf_in->m_type = 0 -391: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -391: bspline_xform_initialize -391: rdims = (5,5,5) -391: vox_per_rgn = (8,8,8) -391: cdims = (8 8 8) -391: ** Registration worker thread finished. -391: Writing transformation ... -391: Warping... -391: Running: plm_warp_native -391: Converting input image... -391: Converting xform... -391: bspline_xform_initialize -391: rdims = (5,5,5) -391: vox_per_rgn = (8,8,8) -391: cdims = (8 8 8) -391: Creating output vf... -391: Creating output volume... -391: Running native warper... -391: bspline_warp complete. -391: Back convert to original type... -391: > Convert vf to itk -391: > Conversion complete. -391: plm_warp_native is complete. -391: Saving image... -391: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd -391: Saving vf... -391: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-vf.nrrd -391: Load: 0.293679 -391: Run: 0.447398 -391: Save: 0.352206 -391: Total: 1.09328 -391: Finished! -391: -391: STDERR: -391: Not an error -129/578 Test #391: plm-bsp-dcos-a ........................ Passed 2.20 sec -test 444 - Start 444: plm-compose-a - -444: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -444: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -444: Test timeout computed to be: 1500 -406: RETVAL: 0 -406: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha -406: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -406: Launching registration worker thread -406: Inside registration worker thread -406: Doing registration stage -406: [1] xf_in->m_type = 0, xf_out->m_type = 0 -406: RESAMPLE 1 1: (2 2 2), (2 2 2) -406: RESAMPLE 1 1: (2 2 2), (2 2 2) -406: volume_calc_grad complete. -406: bspline_xform_initialize -406: Warning: vox_per_rgn was less than 4. -406: Warning: vox_per_rgn was less than 4. -406: Warning: vox_per_rgn was less than 4. -406: rdims = (5,5,5) -406: vox_per_rgn = (4,4,4) -406: cdims = (8 8 8) -406: Algorithm flavor = h -406: Threading = 0 -406: >> Checking JH allocation -406: BSPLINE PARMS -406: max_its = 5 -406: max_feval = 5 -406: BSPLINE XFORM HEADER -406: vox_per_rgn = 4 4 4 -406: roi_offset = 0 0 0 -406: roi_dim = 19 19 19 -406: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 -406: BST METRICS -406: MET 110100 MSE 1.000000 -406: Setting nmax, mmax = 1536 41 -406: >>> START -406: This problem is unconstrained. -406: [ 0, 0] MSE 2326.657 NV 5814 GM -90.046 GN 30.1 [ 0.033 s ] -406: CMIN 0.00 CAVG 0.00 CMAX 0.00 -406: LSD 0.00 -406: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.024 s ] -406: CMIN -0.09 CAVG 0.00 CMAX 0.49 -406: LSD 1.00 -406: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.032 s ] -406: CMIN -0.46 CAVG 0.01 CMAX 2.46 -406: LSD 5.00 -406: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.024 s ] -406: CMIN -1.93 CAVG 0.04 CMAX 10.33 -406: LSD 21.00 -406: [ 1, 4] MSE 880.232 NV 5809 GM 22.704 GN 11.1 [ 0.028 s ] -406: CMIN -14.50 CAVG 0.20 CMAX 61.00 -406: LSD 95.90 -406: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.024 s ] -406: CMIN -12.15 CAVG 0.16 CMAX 47.74 -406: LSD 26.24 -406: [2] xf_out->m_type = 9, xf_in->m_type = 0 -406: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -406: bspline_xform_initialize -406: rdims = (5,5,5) -406: vox_per_rgn = (8,8,8) -406: cdims = (8 8 8) -406: ** Registration worker thread finished. -406: Writing transformation ... -406: Warping... -406: Running: plm_warp_native -406: Converting input image... -406: Converting xform... -406: bspline_xform_initialize -406: rdims = (5,5,5) -406: vox_per_rgn = (8,8,8) -406: cdims = (8 8 8) -406: Creating output vf... -406: Creating output volume... -406: Running native warper... -406: bspline_warp complete. -406: Back convert to original type... -406: > Convert vf to itk -406: > Conversion complete. -406: plm_warp_native is complete. -406: Saving image... -406: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd -406: Saving vf... -406: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-vf.nrrd -406: Load: 0.273369 -406: Run: 0.22791 -406: Save: 0.165114 -406: Total: 0.666393 -406: Finished! -406: -406: STDERR: -406: Not an error -130/578 Test #406: plm-bsp-dcos-f ........................ Passed 1.79 sec -test 448 - Start 448: plm-compose-b - -448: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -448: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -448: Test timeout computed to be: 1500 -439: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -439: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt -439: EXPECTED_ERRNO is -444: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -444: PARMS is compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha -444: EXPECTED_ERRNO is -400: RETVAL: 0 -400: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha -400: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -400: Launching registration worker thread -400: Inside registration worker thread -400: Doing registration stage -400: [1] xf_in->m_type = 0, xf_out->m_type = 0 -400: RESAMPLE 1 1: (2 2 2), (2 2 2) -400: RESAMPLE 1 1: (2 2 2), (2 2 2) -400: volume_calc_grad complete. -400: bspline_xform_initialize -400: Warning: vox_per_rgn was less than 4. -400: Warning: vox_per_rgn was less than 4. -400: Warning: vox_per_rgn was less than 4. -400: rdims = (5,5,5) -400: vox_per_rgn = (4,4,4) -400: cdims = (8 8 8) -400: Algorithm flavor = c -400: Threading = 0 -400: >> Checking JH allocation -400: BSPLINE PARMS -400: max_its = 5 -400: max_feval = 5 -400: BSPLINE XFORM HEADER -400: vox_per_rgn = 4 4 4 -400: roi_offset = 0 0 0 -400: roi_dim = 19 19 19 -400: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 -400: BST METRICS -400: MET 110100 MSE 1.000000 -400: Setting nmax, mmax = 1536 41 -400: >>> START -400: This problem is unconstrained. -400: [ 0, 0] MSE 2326.658 NV 5814 GM -90.046 GN 30.1 [ 0.017 s ] -400: CMIN 0.00 CAVG 0.00 CMAX 0.00 -400: LSD 0.00 -400: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.024 s ] -400: CMIN -0.09 CAVG 0.00 CMAX 0.49 -400: LSD 1.00 -400: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.020 s ] -400: CMIN -0.46 CAVG 0.01 CMAX 2.46 -400: LSD 5.00 -400: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.024 s ] -400: CMIN -1.93 CAVG 0.04 CMAX 10.33 -400: LSD 21.00 -400: [ 1, 4] MSE 880.230 NV 5809 GM 22.704 GN 11.1 [ 0.015 s ] -400: CMIN -14.50 CAVG 0.20 CMAX 61.00 -400: LSD 95.90 -400: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.013 s ] -400: CMIN -12.15 CAVG 0.16 CMAX 47.74 -400: LSD 26.24 -400: [2] xf_out->m_type = 9, xf_in->m_type = 0 -400: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -400: bspline_xform_initialize -400: rdims = (5,5,5) -400: vox_per_rgn = (8,8,8) -400: cdims = (8 8 8) -400: ** Registration worker thread finished. -400: Writing transformation ... -400: Warping... -400: Running: plm_warp_native -400: Converting input image... -400: Converting xform... -400: bspline_xform_initialize -400: rdims = (5,5,5) -400: vox_per_rgn = (8,8,8) -400: cdims = (8 8 8) -400: Creating output vf... -400: Creating output volume... -400: Running native warper... -400: bspline_warp complete. -400: Back convert to original type... -400: > Convert vf to itk -400: > Conversion complete. -400: plm_warp_native is complete. -400: Saving image... -400: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd -400: Saving vf... -400: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-vf.nrrd -400: Load: 0.356051 -400: Run: 0.180444 -400: Save: 0.204609 -400: Total: 0.741104 -400: Finished! -400: -400: STDERR: -400: Not an error -448: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -448: PARMS is compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha -448: EXPECTED_ERRNO is -131/578 Test #400: plm-bsp-dcos-d ........................ Passed 2.10 sec +130/578 Test #406: plm-bsp-dcos-f ........................ Passed 1.59 sec test 452 Start 452: plm-compose-c 452: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 452: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 452: Test timeout computed to be: 1500 -452: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -452: PARMS is compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha -452: EXPECTED_ERRNO is -415: RETVAL: 0 -415: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -415: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -415: Launching registration worker thread -415: Inside registration worker thread -415: Doing registration stage -415: [1] xf_in->m_type = 0, xf_out->m_type = 0 -415: Fixed image for this stage: -415: Dim = 19 19 19 -415: Origin = -24.3421 -24.3421 -24.3421 -415: Spacing = 2.63158 2.63158 2.63158 -415: Direction Cosines = -415: 1 0 0 -415: 0 1 0 -415: 0 0 1 -415: Moving image for this stage: -415: Dim = 19 19 19 -415: Origin = -24.3421 -24.3421 -24.3421 -415: Spacing = 2.63158 2.63158 2.63158 -415: Direction Cosines = -415: 1 0 0 -415: 0 1 0 -415: 0 0 1 -415: Initial Parameters = [0, 0, 0] -415: Starting ITK registration -415: StartEvent: [0, 0, 0] -415: MSE [ 0, 0,10.00] 18756.235 [9.999997615028182, -0.004883617032987221, -0.004883617032987353] -415: :: [0, 0, 0] -415: * -415: MSE [ 1, 1, 5.00] 1.116 [5.318441699151527, 1.2366948554205817, 1.2366948554205934] -18755.12 -415: :: [9.999997615028182, -0.004883617032987221, -0.004883617032987353] -415: * -415: MSE [ 2, 2, 2.50] 5544.602 [7.61065194008583, 0.5310844064631239, 0.5310844064631283] 5543.49 -415: MSE [ 3, 3, 2.50] 1453.699 [9.961460585442484, -0.07045474975050192, -0.07045474975050381] -4090.90 -415: MSE [ 4, 4, 1.25] 4.252 [10.130622373667528, 0.8052975809356612, 0.8052975809356663] -1449.45 -415: EndEvent: [10.130622373667528, 0.8052975809356612, 0.8052975809356663] -415: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded. -415: ITK registration complete -415: [2] xf_out->m_type = 1, xf_in->m_type = 0 -415: ** Registration worker thread finished. -415: Writing transformation ... -415: Warping... -415: plm_warp_itk: xform_to_itk_vf -415: plm_warp_itk: convert_to_itk -415: plm_warp_itk: warping... -415: Saving image... -415: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd -415: Saving vf... -415: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-vf.nrrd -415: Load: 0.130809 -415: Run: 0.131888 -415: Save: 0.074949 -415: Total: 0.337646 -415: Finished! -415: -415: STDERR: -415: Not an error -132/578 Test #415: plm-reg-dv-itk-translation ............ Passed 1.38 sec +131/578 Test #394: plm-bsp-dcos-b ........................ Passed 1.82 sec test 456 Start 456: plm-resample-a 456: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 456: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 456: Test timeout computed to be: 1500 +403: Not an error +132/578 Test #403: plm-bsp-dcos-e ........................ Passed 1.68 sec +test 459 + Start 459: plm-resample-b + +459: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +459: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +459: Test timeout computed to be: 1500 +448: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +448: PARMS is compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha +448: EXPECTED_ERRNO is +459: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +459: PARMS is resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha +459: EXPECTED_ERRNO is +444: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +444: PARMS is compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha +444: EXPECTED_ERRNO is +456: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +456: PARMS is resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2 +456: EXPECTED_ERRNO is +452: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +452: PARMS is compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha +452: EXPECTED_ERRNO is 298: RETVAL: 0 298: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 298: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -8625,20 +8644,20 @@ 298: 0 0 1 298: Starting ITK registration 298: StartEvent: -298: MSE [ 0, 0] 18945.891 [ 0.456 secs] -298: MSE [ 0, 1] 18140.496 [ 0.304 secs] -298: MSE [ 0, 2] 14979.440 [ 0.392 secs] -298: MSE [ 0, 3] 5390.861 [ 0.360 secs] +298: MSE [ 0, 0] 18945.891 [ 0.191 secs] +298: MSE [ 0, 1] 18140.496 [ 0.232 secs] +298: MSE [ 0, 2] 14979.440 [ 0.353 secs] +298: MSE [ 0, 3] 5390.861 [ 0.269 secs] 298: MSE [ 0, 4,319.84] 5390.861 * -298: MSE [ 1, 5] 4259.522 [ 0.360 secs] +298: MSE [ 1, 5] 4259.522 [ 0.226 secs] 298: MSE [ 1, 6,313.58] 4259.522 -1131.34 * -298: MSE [ 2, 7] 465.644 [ 0.296 secs] +298: MSE [ 2, 7] 465.644 [ 0.204 secs] 298: MSE [ 2, 8,36.78] 465.644 -3793.88 * -298: MSE [ 3, 9] 382.530 [ 0.348 secs] +298: MSE [ 3, 9] 382.530 [ 0.244 secs] 298: MSE [ 3, 10,21.77] 382.530 -83.11 * -298: MSE [ 4, 11] 289.494 [ 0.404 secs] +298: MSE [ 4, 11] 289.494 [ 0.220 secs] 298: MSE [ 4, 12,13.35] 289.494 -93.04 * -298: MSE [ 5, 13] 226.103 [ 0.303 secs] +298: MSE [ 5, 13] 226.103 [ 0.304 secs] 298: MSE [ 5, 14,21.50] 226.103 -63.39 * 298: EndEvent: 298: Too many iterations. Iterations = 6 @@ -8655,62 +8674,79 @@ 298: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha 298: Saving vf... 298: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-vf.mha -298: Load: 0.0884478 -298: Run: 3.71532 -298: Save: 0.510505 -298: Total: 4.31427 +298: Load: 0.0437038 +298: Run: 2.9848 +298: Save: 0.363783 +298: Total: 3.39228 298: Finished! 298: 298: STDERR: 298: Not an error -133/578 Test #298: plm-reg-itk-bspline ................... Passed 4.80 sec -test 459 - Start 459: plm-resample-b - -459: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -459: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -459: Test timeout computed to be: 1500 -456: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -456: PARMS is resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2 -456: EXPECTED_ERRNO is -444: RETVAL: 0 -444: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha -444: Finished! -444: -444: STDERR: -444: Not an error -134/578 Test #444: plm-compose-a ......................... Passed 0.55 sec +133/578 Test #298: plm-reg-itk-bspline ................... Passed 3.78 sec test 462 Start 462: plm-resample-c 462: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 462: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 462: Test timeout computed to be: 1500 -459: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -459: PARMS is resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha -459: EXPECTED_ERRNO is -424: RETVAL: 0 -424: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -424: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -424: Launching registration worker thread -424: Inside registration worker thread -424: *** Executing adjust process *** -424: ** Registration worker thread finished. -424: Warping... -424: plm_warp_itk: xform_to_itk_vf -424: plm_warp_itk: convert_to_itk -424: plm_warp_itk: warping... -424: Saving image... -424: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha -424: Load: 0.177724 -424: Run: 0.0714319 -424: Save: 0.0257299 -424: Total: 0.274886 -424: Finished! -424: -424: STDERR: -424: Not an error -135/578 Test #424: plm-reg-process-a ..................... Passed 1.26 sec +415: RETVAL: 0 +415: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +415: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +415: Launching registration worker thread +415: Inside registration worker thread +415: Doing registration stage +415: [1] xf_in->m_type = 0, xf_out->m_type = 0 +415: Fixed image for this stage: +415: Dim = 19 19 19 +415: Origin = -24.3421 -24.3421 -24.3421 +415: Spacing = 2.63158 2.63158 2.63158 +415: Direction Cosines = +415: 1 0 0 +415: 0 1 0 +415: 0 0 1 +415: Moving image for this stage: +415: Dim = 19 19 19 +415: Origin = -24.3421 -24.3421 -24.3421 +415: Spacing = 2.63158 2.63158 2.63158 +415: Direction Cosines = +415: 1 0 0 +415: 0 1 0 +415: 0 0 1 +415: Initial Parameters = [0, 0, 0] +415: Starting ITK registration +415: StartEvent: [0, 0, 0] +415: MSE [ 0, 0,10.00] 18756.235 [9.999997615028182, -0.004883617032987453, -0.004883617032986772] +415: :: [0, 0, 0] +415: * +415: MSE [ 1, 1, 5.00] 1.116 [5.318441699151488, 1.2366948554205894, 1.2366948554204342] -18755.12 +415: :: [9.999997615028182, -0.004883617032987453, -0.004883617032986772] +415: * +415: MSE [ 2, 2, 2.50] 5544.602 [7.610651940085816, 0.5310844064631238, 0.5310844064630558] 5543.49 +415: MSE [ 3, 3, 2.50] 1453.699 [9.961460585442492, -0.07045474975050436, -0.0704547497504936] -4090.90 +415: MSE [ 4, 4, 1.25] 4.252 [10.13062237366743, 0.805297580935725, 0.8052975809356303] -1449.45 +415: EndEvent: [10.13062237366743, 0.805297580935725, 0.8052975809356303] +415: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded. +415: ITK registration complete +415: [2] xf_out->m_type = 1, xf_in->m_type = 0 +415: ** Registration worker thread finished. +415: Writing transformation ... +415: Warping... +415: plm_warp_itk: xform_to_itk_vf +415: plm_warp_itk: convert_to_itk +415: plm_warp_itk: warping... +415: Saving image... +415: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd +415: Saving vf... +415: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-vf.nrrd +415: Load: 0.200792 +415: Run: 0.131764 +415: Save: 0.0688789 +415: Total: 0.401435 +415: Finished! +415: +415: STDERR: +415: Not an error +134/578 Test #415: plm-reg-dv-itk-translation ............ Passed 1.53 sec test 465 Start 465: plm-scale-a @@ -8723,317 +8759,21 @@ 465: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 465: PARMS is scale;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd;--weight;0.4;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha 465: EXPECTED_ERRNO is -439: RETVAL: 0 -439: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -439: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -439: Launching registration worker thread -439: Inside registration worker thread -439: Doing registration stage -439: [1] xf_in->m_type = 0, xf_out->m_type = 0 -439: RESAMPLE 3 1: (0.5 0.5 0.5), (0.5 0.5 0.5) -439: RESAMPLE 3 1: (0.5 0.5 0.5), (0.5 0.5 0.5) -439: volume_calc_grad complete. -439: Computing grid search extent. -439: Dimension 0, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465) -439: Dimension 1, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465) -439: Dimension 2, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465) -439: Native grid search extent: (-10.2493, 10.2493), (-10.2493, 10.2493), (-10.2493, 10.2493) -439: [0 0 0] 17568.3 * -439: Global grid search -439: [-10.2493 -10.2493 -10.2493] 102040 -439: [-6.14958 -10.2493 -10.2493] 87035.1 -439: [-2.04986 -10.2493 -10.2493] 73504.3 -439: [2.04986 -10.2493 -10.2493] 61973.2 -439: [6.14958 -10.2493 -10.2493] 57083.1 -439: [10.2493 -10.2493 -10.2493] 60324.8 -439: [-10.2493 -6.14958 -10.2493] 86358.6 -439: [-6.14958 -6.14958 -10.2493] 71329.7 -439: [-2.04986 -6.14958 -10.2493] 57402.6 -439: [2.04986 -6.14958 -10.2493] 45155 -439: [6.14958 -6.14958 -10.2493] 38807.6 -439: [10.2493 -6.14958 -10.2493] 39786.3 -439: [-10.2493 -2.04986 -10.2493] 79223.6 -439: [-6.14958 -2.04986 -10.2493] 64102 -439: [-2.04986 -2.04986 -10.2493] 49890.5 -439: [2.04986 -2.04986 -10.2493] 37200.4 -439: [6.14958 -2.04986 -10.2493] 30089.3 -439: [10.2493 -2.04986 -10.2493] 29962.9 -439: [-10.2493 2.04986 -10.2493] 79216.3 -439: [-6.14958 2.04986 -10.2493] 64097.4 -439: [-2.04986 2.04986 -10.2493] 49887.5 -439: [2.04986 2.04986 -10.2493] 37198.2 -439: [6.14958 2.04986 -10.2493] 30087.7 -439: [10.2493 2.04986 -10.2493] 29961.4 -439: [-10.2493 6.14958 -10.2493] 86370.3 -439: [-6.14958 6.14958 -10.2493] 71349.9 -439: [-2.04986 6.14958 -10.2493] 57424.9 -439: [2.04986 6.14958 -10.2493] 45174.8 -439: [6.14958 6.14958 -10.2493] 38826.9 -439: [10.2493 6.14958 -10.2493] 39808.1 -439: [-10.2493 10.2493 -10.2493] 101908 -439: [-6.14958 10.2493 -10.2493] 86978.3 -439: [-2.04986 10.2493 -10.2493] 73484.1 -439: [2.04986 10.2493 -10.2493] 61959.1 -439: [6.14958 10.2493 -10.2493] 57074.3 -439: [10.2493 10.2493 -10.2493] 60322.2 -439: [-10.2493 -10.2493 -6.14958] 86358.6 -439: [-6.14958 -10.2493 -6.14958] 71329.7 -439: [-2.04986 -10.2493 -6.14958] 57402.6 -439: [2.04986 -10.2493 -6.14958] 45155 -439: [6.14958 -10.2493 -6.14958] 38807.6 -439: [10.2493 -10.2493 -6.14958] 39786.3 -439: [-10.2493 -6.14958 -6.14958] 72037.7 -439: [-6.14958 -6.14958 -6.14958] 56910.4 -439: [-2.04986 -6.14958 -6.14958] 42538.4 -439: [2.04986 -6.14958 -6.14958] 29552 -439: [6.14958 -6.14958 -6.14958] 21798.9 -439: [10.2493 -6.14958 -6.14958] 20651.8 -439: [-10.2493 -2.04986 -6.14958] 65471 -439: [-6.14958 -2.04986 -6.14958] 50210.2 -439: [-2.04986 -2.04986 -6.14958] 35524.7 -439: [2.04986 -2.04986 -6.14958] 22079 -439: [6.14958 -2.04986 -6.14958] 13577.1 * -439: [10.2493 -2.04986 -6.14958] 11376 * -439: [-10.2493 2.04986 -6.14958] 65464.7 -439: [-6.14958 2.04986 -6.14958] 50206.4 -439: [-2.04986 2.04986 -6.14958] 35522.4 -439: [2.04986 2.04986 -6.14958] 22077.6 -439: [6.14958 2.04986 -6.14958] 13576.2 -439: [10.2493 2.04986 -6.14958] 11375.4 * -439: [-10.2493 6.14958 -6.14958] 72046.3 -439: [-6.14958 6.14958 -6.14958] 56926.2 -439: [-2.04986 6.14958 -6.14958] 42555.4 -439: [2.04986 6.14958 -6.14958] 29566.2 -439: [6.14958 6.14958 -6.14958] 21812 -439: [10.2493 6.14958 -6.14958] 20666.5 -439: [-10.2493 10.2493 -6.14958] 86238.7 -439: [-6.14958 10.2493 -6.14958] 71277.5 -439: [-2.04986 10.2493 -6.14958] 57383.1 -439: [2.04986 10.2493 -6.14958] 45141 -439: [6.14958 10.2493 -6.14958] 38798.2 -439: [10.2493 10.2493 -6.14958] 39782.4 -439: [-10.2493 -10.2493 -2.04986] 79223.6 -439: [-6.14958 -10.2493 -2.04986] 64102 -439: [-2.04986 -10.2493 -2.04986] 49890.5 -439: [2.04986 -10.2493 -2.04986] 37200.4 -439: [6.14958 -10.2493 -2.04986] 30089.3 -439: [10.2493 -10.2493 -2.04986] 29962.9 -439: [-10.2493 -6.14958 -2.04986] 65471 -439: [-6.14958 -6.14958 -2.04986] 50210.2 -439: [-2.04986 -6.14958 -2.04986] 35524.7 -439: [2.04986 -6.14958 -2.04986] 22079 -439: [6.14958 -6.14958 -2.04986] 13577.1 -439: [10.2493 -6.14958 -2.04986] 11376 -439: [-10.2493 -2.04986 -2.04986] 59138.3 -439: [-6.14958 -2.04986 -2.04986] 43721.4 -439: [-2.04986 -2.04986 -2.04986] 28705.1 -439: [2.04986 -2.04986 -2.04986] 14788.4 -439: [6.14958 -2.04986 -2.04986] 5539.07 * -439: [10.2493 -2.04986 -2.04986] 2301.37 * -439: [-10.2493 2.04986 -2.04986] 59132.6 -439: [-6.14958 2.04986 -2.04986] 43718 -439: [-2.04986 2.04986 -2.04986] 28703.3 -439: [2.04986 2.04986 -2.04986] 14787.4 -439: [6.14958 2.04986 -2.04986] 5538.67 -439: [10.2493 2.04986 -2.04986] 2301.27 * -439: [-10.2493 6.14958 -2.04986] 65478.6 -439: [-6.14958 6.14958 -2.04986] 50224.3 -439: [-2.04986 6.14958 -2.04986] 35539.7 -439: [2.04986 6.14958 -2.04986] 22091 -439: [6.14958 6.14958 -2.04986] 13587.7 -439: [10.2493 6.14958 -2.04986] 11387.8 -439: [-10.2493 10.2493 -2.04986] 79111.5 -439: [-6.14958 10.2493 -2.04986] 64054.3 -439: [-2.04986 10.2493 -2.04986] 49873.8 -439: [2.04986 10.2493 -2.04986] 37188.9 -439: [6.14958 10.2493 -2.04986] 30082.5 -439: [10.2493 10.2493 -2.04986] 29961.4 -439: [-10.2493 -10.2493 2.04986] 79216.3 -439: [-6.14958 -10.2493 2.04986] 64097.4 -439: [-2.04986 -10.2493 2.04986] 49887.5 -439: [2.04986 -10.2493 2.04986] 37198.2 -439: [6.14958 -10.2493 2.04986] 30087.7 -439: [10.2493 -10.2493 2.04986] 29961.4 -439: [-10.2493 -6.14958 2.04986] 65464.7 -439: [-6.14958 -6.14958 2.04986] 50206.4 -439: [-2.04986 -6.14958 2.04986] 35522.4 -439: [2.04986 -6.14958 2.04986] 22077.6 -439: [6.14958 -6.14958 2.04986] 13576.2 -439: [10.2493 -6.14958 2.04986] 11375.4 -439: [-10.2493 -2.04986 2.04986] 59132.6 -439: [-6.14958 -2.04986 2.04986] 43718 -439: [-2.04986 -2.04986 2.04986] 28703.3 -439: [2.04986 -2.04986 2.04986] 14787.4 -439: [6.14958 -2.04986 2.04986] 5538.67 -439: [10.2493 -2.04986 2.04986] 2301.27 * -439: [-10.2493 2.04986 2.04986] 59126.8 -439: [-6.14958 2.04986 2.04986] 43714.7 -439: [-2.04986 2.04986 2.04986] 28701.5 -439: [2.04986 2.04986 2.04986] 14786.4 -439: [6.14958 2.04986 2.04986] 5538.27 -439: [10.2493 2.04986 2.04986] 2301.18 * -439: [-10.2493 6.14958 2.04986] 65472.3 -439: [-6.14958 6.14958 2.04986] 50220.5 -439: [-2.04986 6.14958 2.04986] 35537.5 -439: [2.04986 6.14958 2.04986] 22089.6 -439: [6.14958 6.14958 2.04986] 13586.9 -439: [10.2493 6.14958 2.04986] 11387.2 -439: [-10.2493 10.2493 2.04986] 79104.4 -439: [-6.14958 10.2493 2.04986] 64049.8 -439: [-2.04986 10.2493 2.04986] 49870.9 -439: [2.04986 10.2493 2.04986] 37186.9 -439: [6.14958 10.2493 2.04986] 30080.9 -439: [10.2493 10.2493 2.04986] 29960.1 -439: [-10.2493 -10.2493 6.14958] 86370.3 -439: [-6.14958 -10.2493 6.14958] 71349.9 -439: [-2.04986 -10.2493 6.14958] 57424.9 -439: [2.04986 -10.2493 6.14958] 45174.8 -439: [6.14958 -10.2493 6.14958] 38826.9 -439: [10.2493 -10.2493 6.14958] 39808.1 -439: [-10.2493 -6.14958 6.14958] 72046.3 -439: [-6.14958 -6.14958 6.14958] 56926.2 -439: [-2.04986 -6.14958 6.14958] 42555.4 -439: [2.04986 -6.14958 6.14958] 29566.2 -439: [6.14958 -6.14958 6.14958] 21812 -439: [10.2493 -6.14958 6.14958] 20666.5 -439: [-10.2493 -2.04986 6.14958] 65478.6 -439: [-6.14958 -2.04986 6.14958] 50224.3 -439: [-2.04986 -2.04986 6.14958] 35539.7 -439: [2.04986 -2.04986 6.14958] 22091 -439: [6.14958 -2.04986 6.14958] 13587.7 -439: [10.2493 -2.04986 6.14958] 11387.8 -439: [-10.2493 2.04986 6.14958] 65472.4 -439: [-6.14958 2.04986 6.14958] 50220.5 -439: [-2.04986 2.04986 6.14958] 35537.5 -439: [2.04986 2.04986 6.14958] 22089.6 -439: [6.14958 2.04986 6.14958] 13586.9 -439: [10.2493 2.04986 6.14958] 11387.2 -439: [-10.2493 6.14958 6.14958] 72055.1 -439: [-6.14958 6.14958 6.14958] 56942.1 -439: [-2.04986 6.14958 6.14958] 42572.7 -439: [2.04986 6.14958 6.14958] 29580.5 -439: [6.14958 6.14958 6.14958] 21825.4 -439: [10.2493 6.14958 6.14958] 20681.4 -439: [-10.2493 10.2493 6.14958] 86251.4 -439: [-6.14958 10.2493 6.14958] 71298.8 -439: [-2.04986 10.2493 6.14958] 57406.5 -439: [2.04986 10.2493 6.14958] 45161.9 -439: [6.14958 10.2493 6.14958] 38818.7 -439: [10.2493 10.2493 6.14958] 39805.5 -439: [-10.2493 -10.2493 10.2493] 101908 -439: [-6.14958 -10.2493 10.2493] 86978.3 -439: [-2.04986 -10.2493 10.2493] 73484.1 -439: [2.04986 -10.2493 10.2493] 61959.1 -439: [6.14958 -10.2493 10.2493] 57074.3 -439: [10.2493 -10.2493 10.2493] 60322.2 -439: [-10.2493 -6.14958 10.2493] 86238.7 -439: [-6.14958 -6.14958 10.2493] 71277.5 -439: [-2.04986 -6.14958 10.2493] 57383.1 -439: [2.04986 -6.14958 10.2493] 45141 -439: [6.14958 -6.14958 10.2493] 38798.2 -439: [10.2493 -6.14958 10.2493] 39782.4 -439: [-10.2493 -2.04986 10.2493] 79111.5 -439: [-6.14958 -2.04986 10.2493] 64054.3 -439: [-2.04986 -2.04986 10.2493] 49873.8 -439: [2.04986 -2.04986 10.2493] 37188.9 -439: [6.14958 -2.04986 10.2493] 30082.5 -439: [10.2493 -2.04986 10.2493] 29961.4 -439: [-10.2493 2.04986 10.2493] 79104.4 -439: [-6.14958 2.04986 10.2493] 64049.8 -439: [-2.04986 2.04986 10.2493] 49870.9 -439: [2.04986 2.04986 10.2493] 37186.9 -439: [6.14958 2.04986 10.2493] 30081 -439: [10.2493 2.04986 10.2493] 29960.1 -439: [-10.2493 6.14958 10.2493] 86251.4 -439: [-6.14958 6.14958 10.2493] 71298.8 -439: [-2.04986 6.14958 10.2493] 57406.5 -439: [2.04986 6.14958 10.2493] 45161.9 -439: [6.14958 6.14958 10.2493] 38818.7 -439: [10.2493 6.14958 10.2493] 39805.5 -439: [-10.2493 10.2493 10.2493] 101782 -439: [-6.14958 10.2493 10.2493] 86927.9 -439: [-2.04986 10.2493 10.2493] 73469.9 -439: [2.04986 10.2493 10.2493] 61951.1 -439: [6.14958 10.2493 10.2493] 57072 -439: [10.2493 10.2493 10.2493] 60327 -439: [2] xf_out->m_type = 1, xf_in->m_type = 0 -439: ** Registration worker thread finished. -439: Warping... -439: plm_warp_itk: xform_to_itk_vf -439: plm_warp_itk: convert_to_itk -439: plm_warp_itk: warping... -439: Saving image... -439: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha -439: Load: 0.055032 -439: Run: 0.198956 -439: Save: 0.0175719 -439: Total: 0.27156 -439: Finished! -439: -439: STDERR: -439: Not an error -136/578 Test #439: plm-reg-autores-b ..................... Passed 0.76 sec +456: RETVAL: 0 +456: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha +456: +456: STDERR: +456: Not an error +135/578 Test #456: plm-resample-a ........................ Passed 0.54 sec test 468 Start 468: plm-scale-vf-a 468: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-vf-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=scale;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd;--weight;0.4;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 468: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 468: Test timeout computed to be: 1500 -448: RETVAL: 0 -448: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha -448: Finished! -448: -448: STDERR: -448: Not an error -137/578 Test #448: plm-compose-b ......................... Passed 0.76 sec -test 474 - Start 474: plm-thumbnail-a - -474: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -474: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -474: Test timeout computed to be: 1500 468: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 468: PARMS is scale;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd;--weight;0.4;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha 468: EXPECTED_ERRNO is -474: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -474: PARMS is thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2 -474: EXPECTED_ERRNO is -459: RETVAL: 0 -459: STDOUT: Time = 0.007469 seconds -459: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha -459: -459: STDERR: -459: Not an error -138/578 Test #459: plm-resample-b ........................ Passed 0.57 sec -test 477 - Start 477: plm-thumbnail-b - -477: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -477: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -477: Test timeout computed to be: 1500 -452: RETVAL: 0 -452: STDOUT: bspline_xform_initialize -452: rdims = (2,2,2) -452: vox_per_rgn = (22,22,22) -452: cdims = (5 5 5) -452: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha -452: Finished! -452: -452: STDERR: -452: Not an error -139/578 Test #452: plm-compose-c ......................... Passed 1.03 sec -test 480 - Start 480: plm-thumbnail-c - -480: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -480: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -480: Test timeout computed to be: 1500 -477: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -477: PARMS is thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2 -477: EXPECTED_ERRNO is -480: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -480: PARMS is thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust -480: EXPECTED_ERRNO is 436: RETVAL: 0 436: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 436: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -9275,42 +9015,334 @@ 436: plm_warp_itk: warping... 436: Saving image... 436: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha -436: Load: 0.188146 -436: Run: 0.258352 -436: Save: 0.0229311 -436: Total: 0.469429 +436: Load: 0.0818551 +436: Run: 0.180753 +436: Save: 0.035136 +436: Total: 0.297744 436: Finished! 436: 436: STDERR: 436: Not an error -140/578 Test #436: plm-reg-autores-a ..................... Passed 1.26 sec +136/578 Test #436: plm-reg-autores-a ..................... Passed 0.81 sec +test 474 + Start 474: plm-thumbnail-a + +474: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +474: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +474: Test timeout computed to be: 1500 +459: RETVAL: 0 +459: STDOUT: Time = 0.005232 seconds +459: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha +459: +459: STDERR: +459: Not an error +137/578 Test #459: plm-resample-b ........................ Passed 0.62 sec +test 477 + Start 477: plm-thumbnail-b + +477: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +477: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +477: Test timeout computed to be: 1500 +474: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +474: PARMS is thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2 +474: EXPECTED_ERRNO is +477: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +477: PARMS is thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2 +477: EXPECTED_ERRNO is +465: RETVAL: 0 +465: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd +465: +465: STDERR: +465: Not an error +448: RETVAL: 0 +448: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha +448: Finished! +448: +448: STDERR: +138/578 Test #465: plm-scale-a ........................... Passed 0.45 sec +test 480 + Start 480: plm-thumbnail-c + +480: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +480: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +480: Test timeout computed to be: 1500 +448: Not an error +139/578 Test #448: plm-compose-b ......................... Passed 0.78 sec test 483 Start 483: plm-intersect 483: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-intersect" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=intersect;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 483: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 483: Test timeout computed to be: 1500 +480: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +480: PARMS is thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust +480: EXPECTED_ERRNO is +439: RETVAL: 0 +439: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +439: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +439: Launching registration worker thread +439: Inside registration worker thread +439: Doing registration stage +439: [1] xf_in->m_type = 0, xf_out->m_type = 0 +439: RESAMPLE 3 1: (0.5 0.5 0.5), (0.5 0.5 0.5) +439: RESAMPLE 3 1: (0.5 0.5 0.5), (0.5 0.5 0.5) +439: volume_calc_grad complete. +439: Computing grid search extent. +439: Dimension 0, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465) +439: Dimension 1, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465) +439: Dimension 2, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465) +439: Native grid search extent: (-10.2493, 10.2493), (-10.2493, 10.2493), (-10.2493, 10.2493) +439: [0 0 0] 17568.3 * +439: Global grid search +439: [-10.2493 -10.2493 -10.2493] 102040 +439: [-6.14958 -10.2493 -10.2493] 87035.1 +439: [-2.04986 -10.2493 -10.2493] 73504.3 +439: [2.04986 -10.2493 -10.2493] 61973.2 +439: [6.14958 -10.2493 -10.2493] 57083.1 +439: [10.2493 -10.2493 -10.2493] 60324.8 +439: [-10.2493 -6.14958 -10.2493] 86358.6 +439: [-6.14958 -6.14958 -10.2493] 71329.7 +439: [-2.04986 -6.14958 -10.2493] 57402.6 +439: [2.04986 -6.14958 -10.2493] 45155 +439: [6.14958 -6.14958 -10.2493] 38807.6 +439: [10.2493 -6.14958 -10.2493] 39786.3 +439: [-10.2493 -2.04986 -10.2493] 79223.6 +439: [-6.14958 -2.04986 -10.2493] 64102 +439: [-2.04986 -2.04986 -10.2493] 49890.5 +439: [2.04986 -2.04986 -10.2493] 37200.4 +439: [6.14958 -2.04986 -10.2493] 30089.3 +439: [10.2493 -2.04986 -10.2493] 29962.9 +439: [-10.2493 2.04986 -10.2493] 79216.3 +439: [-6.14958 2.04986 -10.2493] 64097.4 +439: [-2.04986 2.04986 -10.2493] 49887.5 +439: [2.04986 2.04986 -10.2493] 37198.2 +439: [6.14958 2.04986 -10.2493] 30087.7 +439: [10.2493 2.04986 -10.2493] 29961.4 +439: [-10.2493 6.14958 -10.2493] 86370.3 +439: [-6.14958 6.14958 -10.2493] 71349.9 +439: [-2.04986 6.14958 -10.2493] 57424.9 +439: [2.04986 6.14958 -10.2493] 45174.8 +439: [6.14958 6.14958 -10.2493] 38826.9 +439: [10.2493 6.14958 -10.2493] 39808.1 +439: [-10.2493 10.2493 -10.2493] 101908 +439: [-6.14958 10.2493 -10.2493] 86978.3 +439: [-2.04986 10.2493 -10.2493] 73484.1 +439: [2.04986 10.2493 -10.2493] 61959.1 +439: [6.14958 10.2493 -10.2493] 57074.3 +439: [10.2493 10.2493 -10.2493] 60322.2 +439: [-10.2493 -10.2493 -6.14958] 86358.6 +439: [-6.14958 -10.2493 -6.14958] 71329.7 +439: [-2.04986 -10.2493 -6.14958] 57402.6 +439: [2.04986 -10.2493 -6.14958] 45155 +439: [6.14958 -10.2493 -6.14958] 38807.6 +439: [10.2493 -10.2493 -6.14958] 39786.3 +439: [-10.2493 -6.14958 -6.14958] 72037.7 +439: [-6.14958 -6.14958 -6.14958] 56910.4 +439: [-2.04986 -6.14958 -6.14958] 42538.4 +439: [2.04986 -6.14958 -6.14958] 29552 +439: [6.14958 -6.14958 -6.14958] 21798.9 +439: [10.2493 -6.14958 -6.14958] 20651.8 +439: [-10.2493 -2.04986 -6.14958] 65471 +439: [-6.14958 -2.04986 -6.14958] 50210.2 +439: [-2.04986 -2.04986 -6.14958] 35524.7 +439: [2.04986 -2.04986 -6.14958] 22079 +439: [6.14958 -2.04986 -6.14958] 13577.1 * +439: [10.2493 -2.04986 -6.14958] 11376 * +439: [-10.2493 2.04986 -6.14958] 65464.7 +439: [-6.14958 2.04986 -6.14958] 50206.4 +439: [-2.04986 2.04986 -6.14958] 35522.4 +439: [2.04986 2.04986 -6.14958] 22077.6 +439: [6.14958 2.04986 -6.14958] 13576.2 +439: [10.2493 2.04986 -6.14958] 11375.4 * +439: [-10.2493 6.14958 -6.14958] 72046.3 +439: [-6.14958 6.14958 -6.14958] 56926.2 +439: [-2.04986 6.14958 -6.14958] 42555.4 +439: [2.04986 6.14958 -6.14958] 29566.2 +439: [6.14958 6.14958 -6.14958] 21812 +439: [10.2493 6.14958 -6.14958] 20666.5 +439: [-10.2493 10.2493 -6.14958] 86238.7 +439: [-6.14958 10.2493 -6.14958] 71277.5 +439: [-2.04986 10.2493 -6.14958] 57383.1 +439: [2.04986 10.2493 -6.14958] 45141 +439: [6.14958 10.2493 -6.14958] 38798.2 +439: [10.2493 10.2493 -6.14958] 39782.4 +439: [-10.2493 -10.2493 -2.04986] 79223.6 +439: [-6.14958 -10.2493 -2.04986] 64102 +439: [-2.04986 -10.2493 -2.04986] 49890.5 +439: [2.04986 -10.2493 -2.04986] 37200.4 +439: [6.14958 -10.2493 -2.04986] 30089.3 +439: [10.2493 -10.2493 -2.04986] 29962.9 +439: [-10.2493 -6.14958 -2.04986] 65471 +439: [-6.14958 -6.14958 -2.04986] 50210.2 +439: [-2.04986 -6.14958 -2.04986] 35524.7 +439: [2.04986 -6.14958 -2.04986] 22079 +439: [6.14958 -6.14958 -2.04986] 13577.1 +439: [10.2493 -6.14958 -2.04986] 11376 +439: [-10.2493 -2.04986 -2.04986] 59138.3 +439: [-6.14958 -2.04986 -2.04986] 43721.4 +439: [-2.04986 -2.04986 -2.04986] 28705.1 +439: [2.04986 -2.04986 -2.04986] 14788.4 +439: [6.14958 -2.04986 -2.04986] 5539.07 * +439: [10.2493 -2.04986 -2.04986] 2301.37 * +439: [-10.2493 2.04986 -2.04986] 59132.6 +439: [-6.14958 2.04986 -2.04986] 43718 +439: [-2.04986 2.04986 -2.04986] 28703.3 +439: [2.04986 2.04986 -2.04986] 14787.4 +439: [6.14958 2.04986 -2.04986] 5538.67 +439: [10.2493 2.04986 -2.04986] 2301.27 * +439: [-10.2493 6.14958 -2.04986] 65478.6 +439: [-6.14958 6.14958 -2.04986] 50224.3 +439: [-2.04986 6.14958 -2.04986] 35539.7 +439: [2.04986 6.14958 -2.04986] 22091 +439: [6.14958 6.14958 -2.04986] 13587.7 +439: [10.2493 6.14958 -2.04986] 11387.8 +439: [-10.2493 10.2493 -2.04986] 79111.5 +439: [-6.14958 10.2493 -2.04986] 64054.3 +439: [-2.04986 10.2493 -2.04986] 49873.8 +439: [2.04986 10.2493 -2.04986] 37188.9 +439: [6.14958 10.2493 -2.04986] 30082.5 +439: [10.2493 10.2493 -2.04986] 29961.4 +439: [-10.2493 -10.2493 2.04986] 79216.3 +439: [-6.14958 -10.2493 2.04986] 64097.4 +439: [-2.04986 -10.2493 2.04986] 49887.5 +439: [2.04986 -10.2493 2.04986] 37198.2 +439: [6.14958 -10.2493 2.04986] 30087.7 +439: [10.2493 -10.2493 2.04986] 29961.4 +439: [-10.2493 -6.14958 2.04986] 65464.7 +439: [-6.14958 -6.14958 2.04986] 50206.4 +439: [-2.04986 -6.14958 2.04986] 35522.4 +439: [2.04986 -6.14958 2.04986] 22077.6 +439: [6.14958 -6.14958 2.04986] 13576.2 +439: [10.2493 -6.14958 2.04986] 11375.4 +439: [-10.2493 -2.04986 2.04986] 59132.6 +439: [-6.14958 -2.04986 2.04986] 43718 +439: [-2.04986 -2.04986 2.04986] 28703.3 +439: [2.04986 -2.04986 2.04986] 14787.4 +439: [6.14958 -2.04986 2.04986] 5538.67 +439: [10.2493 -2.04986 2.04986] 2301.27 * +439: [-10.2493 2.04986 2.04986] 59126.8 +439: [-6.14958 2.04986 2.04986] 43714.7 +439: [-2.04986 2.04986 2.04986] 28701.5 +439: [2.04986 2.04986 2.04986] 14786.4 +439: [6.14958 2.04986 2.04986] 5538.27 +439: [10.2493 2.04986 2.04986] 2301.18 * +439: [-10.2493 6.14958 2.04986] 65472.3 +439: [-6.14958 6.14958 2.04986] 50220.5 +439: [-2.04986 6.14958 2.04986] 35537.5 +439: [2.04986 6.14958 2.04986] 22089.6 +439: [6.14958 6.14958 2.04986] 13586.9 +439: [10.2493 6.14958 2.04986] 11387.2 +439: [-10.2493 10.2493 2.04986] 79104.4 +439: [-6.14958 10.2493 2.04986] 64049.8 +439: [-2.04986 10.2493 2.04986] 49870.9 +439: [2.04986 10.2493 2.04986] 37186.9 +439: [6.14958 10.2493 2.04986] 30080.9 +439: [10.2493 10.2493 2.04986] 29960.1 +439: [-10.2493 -10.2493 6.14958] 86370.3 +439: [-6.14958 -10.2493 6.14958] 71349.9 +439: [-2.04986 -10.2493 6.14958] 57424.9 +439: [2.04986 -10.2493 6.14958] 45174.8 +439: [6.14958 -10.2493 6.14958] 38826.9 +439: [10.2493 -10.2493 6.14958] 39808.1 +439: [-10.2493 -6.14958 6.14958] 72046.3 +439: [-6.14958 -6.14958 6.14958] 56926.2 +439: [-2.04986 -6.14958 6.14958] 42555.4 +439: [2.04986 -6.14958 6.14958] 29566.2 +439: [6.14958 -6.14958 6.14958] 21812 +439: [10.2493 -6.14958 6.14958] 20666.5 +439: [-10.2493 -2.04986 6.14958] 65478.6 +439: [-6.14958 -2.04986 6.14958] 50224.3 +439: [-2.04986 -2.04986 6.14958] 35539.7 +439: [2.04986 -2.04986 6.14958] 22091 +439: [6.14958 -2.04986 6.14958] 13587.7 +439: [10.2493 -2.04986 6.14958] 11387.8 +439: [-10.2493 2.04986 6.14958] 65472.4 +439: [-6.14958 2.04986 6.14958] 50220.5 +439: [-2.04986 2.04986 6.14958] 35537.5 +439: [2.04986 2.04986 6.14958] 22089.6 +439: [6.14958 2.04986 6.14958] 13586.9 +439: [10.2493 2.04986 6.14958] 11387.2 +439: [-10.2493 6.14958 6.14958] 72055.1 +439: [-6.14958 6.14958 6.14958] 56942.1 +439: [-2.04986 6.14958 6.14958] 42572.7 +439: [2.04986 6.14958 6.14958] 29580.5 +439: [6.14958 6.14958 6.14958] 21825.4 +439: [10.2493 6.14958 6.14958] 20681.4 +439: [-10.2493 10.2493 6.14958] 86251.4 +439: [-6.14958 10.2493 6.14958] 71298.8 +439: [-2.04986 10.2493 6.14958] 57406.5 +439: [2.04986 10.2493 6.14958] 45161.9 +439: [6.14958 10.2493 6.14958] 38818.7 +439: [10.2493 10.2493 6.14958] 39805.5 +439: [-10.2493 -10.2493 10.2493] 101908 +439: [-6.14958 -10.2493 10.2493] 86978.3 +439: [-2.04986 -10.2493 10.2493] 73484.1 +439: [2.04986 -10.2493 10.2493] 61959.1 +439: [6.14958 -10.2493 10.2493] 57074.3 +439: [10.2493 -10.2493 10.2493] 60322.2 +439: [-10.2493 -6.14958 10.2493] 86238.7 +439: [-6.14958 -6.14958 10.2493] 71277.5 +439: [-2.04986 -6.14958 10.2493] 57383.1 +439: [2.04986 -6.14958 10.2493] 45141 +439: [6.14958 -6.14958 10.2493] 38798.2 +439: [10.2493 -6.14958 10.2493] 39782.4 +439: [-10.2493 -2.04986 10.2493] 79111.5 +439: [-6.14958 -2.04986 10.2493] 64054.3 +439: [-2.04986 -2.04986 10.2493] 49873.8 +439: [2.04986 -2.04986 10.2493] 37188.9 +439: [6.14958 -2.04986 10.2493] 30082.5 +439: [10.2493 -2.04986 10.2493] 29961.4 +439: [-10.2493 2.04986 10.2493] 79104.4 +439: [-6.14958 2.04986 10.2493] 64049.8 +439: [-2.04986 2.04986 10.2493] 49870.9 +439: [2.04986 2.04986 10.2493] 37186.9 +439: [6.14958 2.04986 10.2493] 30081 +439: [10.2493 2.04986 10.2493] 29960.1 +439: [-10.2493 6.14958 10.2493] 86251.4 +439: [-6.14958 6.14958 10.2493] 71298.8 +439: [-2.04986 6.14958 10.2493] 57406.5 +439: [2.04986 6.14958 10.2493] 45161.9 +439: [6.14958 6.14958 10.2493] 38818.7 +439: [10.2493 6.14958 10.2493] 39805.5 +439: [-10.2493 10.2493 10.2493] 101782 +439: [-6.14958 10.2493 10.2493] 86927.9 +439: [-2.04986 10.2493 10.2493] 73469.9 +439: [2.04986 10.2493 10.2493] 61951.1 +439: [6.14958 10.2493 10.2493] 57072 +439: [10.2493 10.2493 10.2493] 60327 +439: [2] xf_out->m_type = 1, xf_in->m_type = 0 +439: ** Registration worker thread finished. +439: Warping... +439: plm_warp_itk: xform_to_itk_vf +439: plm_warp_itk: convert_to_itk +439: plm_warp_itk: warping... +439: Saving image... +439: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha +439: Load: 0.142824 +439: Run: 0.303364 +439: Save: 0.00630999 +439: Total: 0.452498 +439: Finished! +439: +439: STDERR: 483: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 483: PARMS is intersect;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha 483: EXPECTED_ERRNO is -462: RETVAL: 0 -462: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha -462: -462: STDERR: -462: Not an error -456: RETVAL: 0 -456: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha -456: -456: STDERR: -456: Not an error -141/578 Test #462: plm-resample-c ........................ Passed 0.82 sec +439: Not an error +140/578 Test #439: plm-reg-autores-b ..................... Passed 0.85 sec test 486 Start 486: plm-union 486: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-union" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=union;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 486: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 486: Test timeout computed to be: 1500 -142/578 Test #456: plm-resample-a ........................ Passed 0.93 sec +444: RETVAL: 0 +444: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha +444: Finished! +444: +444: STDERR: +444: Not an error +141/578 Test #444: plm-compose-a ......................... Passed 0.85 sec test 489 Start 489: plm-threshold-a @@ -9356,67 +9388,67 @@ 412: Setting nmax, mmax = 648 27 412: >>> START 412: This problem is unconstrained. -412: [ 0, 0] MSE 1310.066 NV 729 GM 32.312 GN 10.8 [ 0.050 s ] +412: [ 0, 0] MSE 1310.066 NV 729 GM 32.312 GN 10.8 [ 0.043 s ] 412: CMIN 0.00 CAVG 0.00 CMAX 0.00 412: LSD 0.00 -412: [ 0, 1] MSE 1295.068 NV 729 GM 32.107 GN 10.8 [ 0.020 s ] +412: [ 0, 1] MSE 1295.068 NV 729 GM 32.107 GN 10.8 [ 0.024 s ] 412: CMIN -0.80 CAVG -0.00 CMAX 0.03 412: LSD 1.00 -412: [ 0, 2] MSE 1236.886 NV 729 GM 31.289 GN 10.5 [ 0.032 s ] +412: [ 0, 2] MSE 1236.886 NV 729 GM 31.289 GN 10.5 [ 0.012 s ] 412: CMIN -3.98 CAVG -0.02 CMAX 0.14 412: LSD 5.00 -412: [ 0, 3] MSE 1033.121 NV 729 GM 28.011 GN 9.4 [ 0.032 s ] +412: [ 0, 3] MSE 1033.121 NV 729 GM 28.011 GN 9.4 [ 0.036 s ] 412: CMIN -16.73 CAVG -0.10 CMAX 0.57 412: LSD 21.00 -412: [ 1, 4] MSE 1227.425 NV 729 GM -31.287 GN 10.6 [ 0.016 s ] +412: [ 1, 4] MSE 1227.425 NV 729 GM -31.287 GN 10.6 [ 0.008 s ] 412: CMIN -130.39 CAVG -0.75 CMAX 15.78 412: LSD 145.43 -412: [ 1, 5] MSE 666.262 NV 729 GM 16.009 GN 5.49 [ 0.032 s ] +412: [ 1, 5] MSE 666.262 NV 729 GM 16.009 GN 5.49 [ 0.016 s ] 412: CMIN -63.32 CAVG -0.36 CMAX 6.81 412: LSD 59.61 412: [ 2, 6] MSE 1232.974 NV 729 GM -31.573 GN 10.6 [ 0.016 s ] 412: CMIN -133.31 CAVG -0.76 CMAX 26.37 412: LSD 96.76 -412: [ 2, 7] MSE 663.364 NV 729 GM -16.837 GN 5.81 [ 0.036 s ] +412: [ 2, 7] MSE 663.364 NV 729 GM -16.837 GN 5.81 [ 0.008 s ] 412: CMIN -74.19 CAVG -0.42 CMAX 9.85 412: LSD 15.03 -412: [ 3, 8] MSE 654.961 NV 729 GM -10.617 GN 3.9 [ 0.028 s ] +412: [ 3, 8] MSE 654.961 NV 729 GM -10.617 GN 3.9 [ 0.016 s ] 412: CMIN -69.17 CAVG -0.40 CMAX 9.75 412: LSD 6.20 412: [ 4, 9] MSE 648.056 NV 729 GM 16.849 GN 5.74 [ 0.016 s ] 412: CMIN -59.17 CAVG -0.35 CMAX 12.07 412: LSD 13.05 -412: [ 4, 10] MSE 648.518 NV 729 GM 6.481 GN 2.37 [ 0.032 s ] +412: [ 4, 10] MSE 648.518 NV 729 GM 6.481 GN 2.37 [ 0.024 s ] 412: CMIN -64.64 CAVG -0.37 CMAX 10.80 412: LSD 5.91 412: [ 5, 11] MSE 642.586 NV 729 GM -2.800 GN 1.61 [ 0.016 s ] 412: CMIN -65.72 CAVG -0.38 CMAX 12.16 412: LSD 3.39 -412: [ 6, 12] MSE 621.446 NV 729 GM -3.050 GN 1.62 [ 0.032 s ] +412: [ 6, 12] MSE 621.446 NV 729 GM -3.050 GN 1.62 [ 0.023 s ] 412: CMIN -65.92 CAVG -0.39 CMAX 17.36 412: LSD 11.87 -412: [ 6, 13] MSE 550.866 NV 729 GM -6.628 GN 2.45 [ 0.032 s ] +412: [ 6, 13] MSE 550.866 NV 729 GM -6.628 GN 2.45 [ 0.018 s ] 412: CMIN -66.69 CAVG -0.41 CMAX 38.13 412: LSD 59.33 -412: [ 7, 14] MSE 512.605 NV 729 GM -3.857 GN 1.62 [ 0.016 s ] +412: [ 7, 14] MSE 512.605 NV 729 GM -3.857 GN 1.62 [ 0.022 s ] 412: CMIN -62.22 CAVG -0.42 CMAX 47.82 412: LSD 24.85 -412: [ 7, 15] MSE 447.450 NV 729 GM 1.527 GN 1.38 [ 0.032 s ] +412: [ 7, 15] MSE 447.450 NV 729 GM 1.527 GN 1.38 [ 0.016 s ] 412: CMIN -86.57 CAVG -0.48 CMAX 86.57 412: LSD 124.23 -412: [ 7, 16] MSE 464.351 NV 729 GM 2.120 GN 1.3 [ 0.032 s ] +412: [ 7, 16] MSE 464.351 NV 729 GM 2.120 GN 1.3 [ 0.024 s ] 412: CMIN -65.28 CAVG -0.45 CMAX 65.28 412: LSD 69.63 412: [ 8, 17] MSE 472.701 NV 729 GM -6.632 GN 2.42 [ 0.016 s ] 412: CMIN -65.88 CAVG -0.45 CMAX 65.88 412: LSD 10.76 -412: [ 8, 18] MSE 465.428 NV 729 GM 2.619 GN 1.34 [ 0.032 s ] +412: [ 8, 18] MSE 465.428 NV 729 GM 2.619 GN 1.34 [ 0.024 s ] 412: CMIN -65.36 CAVG -0.45 CMAX 65.36 412: LSD 1.50 -412: [ 8, 19] MSE 464.475 NV 729 GM 2.117 GN 1.3 [ 0.016 s ] +412: [ 8, 19] MSE 464.475 NV 729 GM 2.117 GN 1.3 [ 0.024 s ] 412: CMIN -65.29 CAVG -0.45 CMAX 65.29 412: LSD 0.17 -412: [ 8, 20] MSE 464.365 NV 729 GM 2.120 GN 1.3 [ 0.032 s ] +412: [ 8, 20] MSE 464.365 NV 729 GM 2.120 GN 1.3 [ 0.024 s ] 412: CMIN -65.28 CAVG -0.45 CMAX 65.28 412: LSD 0.02 412: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -9448,67 +9480,67 @@ 412: Setting nmax, mmax = 6591 83 412: >>> START 412: This problem is unconstrained. -412: [ 0, 0] MSE 2187.416 NV 54548 GM -54.885 GN 20.1 [ 0.027 s ] +412: [ 0, 0] MSE 2187.416 NV 54548 GM -54.885 GN 20.1 [ 0.012 s ] 412: CMIN -34.32 CAVG -2.98 CMAX 34.99 412: LSD 0.00 -412: [ 0, 1] MSE 2164.676 NV 54548 GM -53.547 GN 19.7 [ 0.045 s ] +412: [ 0, 1] MSE 2164.676 NV 54548 GM -53.547 GN 19.7 [ 0.021 s ] 412: CMIN -34.32 CAVG -2.98 CMAX 34.99 412: LSD 1.00 -412: [ 0, 2] MSE 2077.643 NV 54548 GM -48.153 GN 18.1 [ 0.015 s ] +412: [ 0, 2] MSE 2077.643 NV 54548 GM -48.153 GN 18.1 [ 0.023 s ] 412: CMIN -34.32 CAVG -2.98 CMAX 34.99 412: LSD 5.00 -412: [ 1, 3] MSE 1531.465 NV 54548 GM -5.028 GN 6.72 [ 0.032 s ] +412: [ 1, 3] MSE 1531.465 NV 54548 GM -5.028 GN 6.72 [ 0.016 s ] 412: CMIN -34.32 CAVG -2.97 CMAX 34.99 412: LSD 49.50 -412: [ 2, 4] MSE 1454.329 NV 54548 GM 33.264 GN 9.36 [ 0.023 s ] +412: [ 2, 4] MSE 1454.329 NV 54548 GM 33.264 GN 9.36 [ 0.015 s ] 412: CMIN -34.74 CAVG -2.96 CMAX 34.99 412: LSD 27.82 -412: [ 3, 5] MSE 1285.873 NV 54548 GM 41.621 GN 9.3 [ 0.013 s ] +412: [ 3, 5] MSE 1285.873 NV 54548 GM 41.621 GN 9.3 [ 0.015 s ] 412: CMIN -38.62 CAVG -2.96 CMAX 34.99 412: LSD 33.32 -412: [ 4, 6] MSE 601.694 NV 54548 GM -58.120 GN 12.7 [ 0.024 s ] +412: [ 4, 6] MSE 601.694 NV 54548 GM -58.120 GN 12.7 [ 0.015 s ] 412: CMIN -66.67 CAVG -3.01 CMAX 47.45 412: LSD 225.15 -412: [ 5, 7] MSE 543.836 NV 54548 GM 31.901 GN 9.57 [ 0.025 s ] +412: [ 5, 7] MSE 543.836 NV 54548 GM 31.901 GN 9.57 [ 0.015 s ] 412: CMIN -66.22 CAVG -2.99 CMAX 59.99 412: LSD 53.14 -412: [ 6, 8] MSE 418.242 NV 54548 GM 12.804 GN 3.31 [ 0.014 s ] +412: [ 6, 8] MSE 418.242 NV 54548 GM 12.804 GN 3.31 [ 0.015 s ] 412: CMIN -65.97 CAVG -3.00 CMAX 53.84 412: LSD 23.35 412: [ 7, 9] MSE 404.446 NV 54548 GM -9.046 GN 2.82 [ 0.015 s ] 412: CMIN -67.92 CAVG -3.00 CMAX 54.77 412: LSD 12.26 -412: [ 8, 10] MSE 385.397 NV 54548 GM -5.940 GN 2.61 [ 0.013 s ] +412: [ 8, 10] MSE 385.397 NV 54548 GM -5.940 GN 2.61 [ 0.017 s ] 412: CMIN -68.58 CAVG -3.00 CMAX 55.54 412: LSD 8.37 -412: [ 9, 11] MSE 330.971 NV 54548 GM -28.234 GN 4.05 [ 0.024 s ] +412: [ 9, 11] MSE 330.971 NV 54548 GM -28.234 GN 4.05 [ 0.010 s ] 412: CMIN -72.02 CAVG -3.01 CMAX 62.09 412: LSD 44.90 -412: [10, 12] MSE 292.026 NV 54548 GM -5.908 GN 2.66 [ 0.036 s ] +412: [10, 12] MSE 292.026 NV 54548 GM -5.908 GN 2.66 [ 0.028 s ] 412: CMIN -74.57 CAVG -3.00 CMAX 67.66 412: LSD 33.62 -412: [11, 13] MSE 251.369 NV 54548 GM 4.024 GN 2.37 [ 0.022 s ] +412: [11, 13] MSE 251.369 NV 54548 GM 4.024 GN 2.37 [ 0.024 s ] 412: CMIN -84.98 CAVG -2.99 CMAX 73.83 412: LSD 50.34 -412: [12, 14] MSE 228.758 NV 54548 GM 11.643 GN 4.01 [ 0.022 s ] +412: [12, 14] MSE 228.758 NV 54548 GM 11.643 GN 4.01 [ 0.027 s ] 412: CMIN -98.90 CAVG -2.97 CMAX 76.10 412: LSD 60.96 -412: [13, 15] MSE 306.308 NV 54548 GM 49.796 GN 7.96 [ 0.025 s ] +412: [13, 15] MSE 306.308 NV 54548 GM 49.796 GN 7.96 [ 0.014 s ] 412: CMIN -130.24 CAVG -2.94 CMAX 83.22 412: LSD 135.53 -412: [13, 16] MSE 226.800 NV 54548 GM 20.941 GN 4.12 [ 0.033 s ] +412: [13, 16] MSE 226.800 NV 54548 GM 20.941 GN 4.12 [ 0.023 s ] 412: CMIN -103.93 CAVG -2.96 CMAX 76.84 412: LSD 21.75 -412: [14, 17] MSE 205.578 NV 54548 GM 24.444 GN 3.6 [ 0.025 s ] +412: [14, 17] MSE 205.578 NV 54548 GM 24.444 GN 3.6 [ 0.014 s ] 412: CMIN -117.55 CAVG -2.96 CMAX 78.37 412: LSD 53.89 -412: [15, 18] MSE 158.105 NV 54548 GM 6.383 GN 1.69 [ 0.021 s ] +412: [15, 18] MSE 158.105 NV 54548 GM 6.383 GN 1.69 [ 0.015 s ] 412: CMIN -116.51 CAVG -2.96 CMAX 72.95 412: LSD 24.10 -412: [16, 19] MSE 139.232 NV 54548 GM -1.923 GN 1.28 [ 0.021 s ] +412: [16, 19] MSE 139.232 NV 54548 GM -1.923 GN 1.28 [ 0.014 s ] 412: CMIN -119.83 CAVG -2.96 CMAX 72.22 412: LSD 15.80 -412: [17, 20] MSE 119.453 NV 54548 GM -6.009 GN 1.45 [ 0.022 s ] +412: [17, 20] MSE 119.453 NV 54548 GM -6.009 GN 1.45 [ 0.015 s ] 412: CMIN -128.50 CAVG -2.96 CMAX 71.16 412: LSD 33.91 412: [2] xf_out->m_type = 9, xf_in->m_type = 9 @@ -9528,74 +9560,75 @@ 412: plm_warp_native is complete. 412: Saving image... 412: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd -412: Load: 0.23719 -412: Run: 1.2074 -412: Save: 0.0798609 -412: Total: 1.52446 +412: Load: 0.290102 +412: Run: 0.861182 +412: Save: 0.073761 +412: Total: 1.22504 412: Finished! 412: 412: STDERR: 412: Not an error -143/578 Test #412: plm-reg-multi-b ....................... Passed 2.61 sec +142/578 Test #412: plm-reg-multi-b ....................... Passed 2.21 sec test 492 Start 492: plm-threshold-b 492: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 492: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 492: Test timeout computed to be: 1500 -492: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -492: PARMS is threshold;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900 -492: EXPECTED_ERRNO is -465: RETVAL: 0 -465: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd -465: -465: STDERR: -465: Not an error -144/578 Test #465: plm-scale-a ........................... Passed 0.96 sec +452: RETVAL: 0 +452: STDOUT: bspline_xform_initialize +452: rdims = (2,2,2) +452: vox_per_rgn = (22,22,22) +452: cdims = (5 5 5) +452: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha +452: Finished! +452: +452: STDERR: +452: Not an error +143/578 Test #452: plm-compose-c ......................... Passed 0.92 sec test 495 Start 495: plm-threshold-c 495: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 495: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 495: Test timeout computed to be: 1500 +492: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +492: PARMS is threshold;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900 +492: EXPECTED_ERRNO is +495: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +495: PARMS is threshold;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888 +495: EXPECTED_ERRNO is 474: RETVAL: 0 -474: STDOUT: Time = 0.005968 seconds +474: STDOUT: Time = 0.000166 seconds 474: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png 474: 474: STDERR: 474: Not an error -495: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -495: PARMS is threshold;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888 -495: EXPECTED_ERRNO is -145/578 Test #474: plm-thumbnail-a ....................... Passed 0.86 sec +144/578 Test #474: plm-thumbnail-a ....................... Passed 0.42 sec test 501 Start 501: plm-warp-a 501: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--algorithm;itk;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 501: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 501: Test timeout computed to be: 1500 -501: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -501: PARMS is warp;--algorithm;itk;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha -501: EXPECTED_ERRNO is -468: RETVAL: 0 -468: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd -468: -468: STDERR: -468: Not an error -146/578 Test #468: plm-scale-vf-a ........................ Passed 0.99 sec +462: RETVAL: 0 +462: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha +462: +462: STDERR: +462: Not an error +483: RETVAL: 0 +483: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha +483: +483: STDERR: +483: Not an error +145/578 Test #462: plm-resample-c ........................ Passed 0.89 sec test 504 Start 504: plm-warp-b 504: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha;--default-value;0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 504: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 504: Test timeout computed to be: 1500 -477: RETVAL: 0 -477: STDOUT: Time = 0.006310 seconds -477: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png -477: -477: STDERR: -477: Not an error -147/578 Test #477: plm-thumbnail-b ....................... Passed 0.68 sec +146/578 Test #483: plm-intersect ......................... Passed 0.34 sec test 509 Start 509: plm-warp-c @@ -9605,162 +9638,164 @@ 504: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 504: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha;--default-value;0 504: EXPECTED_ERRNO is -509: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -509: PARMS is warp;--algorithm;itk;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha;--interpolation;nn;--default-value;0 -509: EXPECTED_ERRNO is -489: RETVAL: 0 -489: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha -489: -489: STDERR: -489: Not an error -148/578 Test #489: plm-threshold-a ....................... Passed 0.44 sec +468: RETVAL: 0 +468: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd +468: +468: STDERR: +468: Not an error +147/578 Test #468: plm-scale-vf-a ........................ Passed 0.56 sec test 512 Start 512: plm-warp-d 512: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 512: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 512: Test timeout computed to be: 1500 -512: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -512: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0 -512: EXPECTED_ERRNO is -483: RETVAL: 0 -483: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha -483: -483: STDERR: -483: Not an error -149/578 Test #483: plm-intersect ......................... Passed 0.71 sec +501: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +501: PARMS is warp;--algorithm;itk;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha +501: EXPECTED_ERRNO is +509: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +509: PARMS is warp;--algorithm;itk;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha;--interpolation;nn;--default-value;0 +509: EXPECTED_ERRNO is +477: RETVAL: 0 +477: STDOUT: Time = 0.000342 seconds +477: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png +477: +477: STDERR: +486: RETVAL: 0 +486: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha +486: +486: STDERR: +477: Not an error +148/578 Test #477: plm-thumbnail-b ....................... Passed 0.52 sec test 515 Start 515: plm-warp-f 515: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 515: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 515: Test timeout computed to be: 1500 -515: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -515: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf -515: EXPECTED_ERRNO is -486: RETVAL: 0 -486: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha -486: -486: STDERR: +512: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +512: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0 +512: EXPECTED_ERRNO is 486: Not an error -150/578 Test #486: plm-union ............................. Passed 0.62 sec +149/578 Test #486: plm-union ............................. Passed 0.41 sec test 518 Start 518: plm-warp-g 518: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-g" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 518: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 518: Test timeout computed to be: 1500 +515: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +515: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf +515: EXPECTED_ERRNO is +518: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +518: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf +518: EXPECTED_ERRNO is 480: RETVAL: 0 -480: STDOUT: Time = 0.002674 seconds +480: STDOUT: Time = 0.007718 seconds 480: Auto-adjusting intensities... 480: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png 480: 480: STDERR: 480: Not an error -151/578 Test #480: plm-thumbnail-c ....................... Passed 0.95 sec +150/578 Test #480: plm-thumbnail-c ....................... Passed 0.54 sec test 521 Start 521: plm-warp-h 521: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-h" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 521: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 521: Test timeout computed to be: 1500 +521: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +521: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf +521: EXPECTED_ERRNO is 492: RETVAL: 0 492: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha 492: 492: STDERR: 492: Not an error -152/578 Test #492: plm-threshold-b ....................... Passed 0.59 sec +151/578 Test #492: plm-threshold-b ....................... Passed 0.43 sec test 524 Start 524: plm-warp-i 524: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-i" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 524: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 524: Test timeout computed to be: 1500 -518: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -518: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf -518: EXPECTED_ERRNO is -521: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -521: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf -521: EXPECTED_ERRNO is -524: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -524: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf -524: EXPECTED_ERRNO is +489: RETVAL: 0 +489: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha +489: +489: STDERR: 495: RETVAL: 0 495: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha 495: 495: STDERR: 495: Not an error -153/578 Test #495: plm-threshold-c ....................... Passed 0.65 sec +489: Not an error +152/578 Test #495: plm-threshold-c ....................... Passed 0.41 sec test 527 Start 527: plm-xf-convert-a 527: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 527: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 527: Test timeout computed to be: 1500 -512: RETVAL: 0 -512: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) -512: bspline_xform_initialize -512: rdims = (3,3,3) -512: vox_per_rgn = (15,15,15) -512: cdims = (6 6 6) -512: Setting PIH from XFORM -512: PIH is: -512: Origin = -25.0000 -25.0000 -25.0000 -512: Size = 38 38 38 -512: Spacing = 1.3158 1.3158 1.3158 -512: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -512: Rt_study_warp: Warping m_img -512: Running: plm_warp_native -512: Converting input image... -512: Converting xform... -512: bspline_xform_initialize -512: rdims = (3,3,3) -512: vox_per_rgn = (15,15,15) -512: cdims = (6 6 6) -512: Creating output vf... -512: Creating output volume... -512: Running native warper... -512: bspline_warp complete. -512: Back convert to original type... -512: > Convert vf to itk -512: > Conversion complete. -512: plm_warp_native is complete. -512: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha) -512: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha -512: Rt_study_warp: Saving vf. -512: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha -512: Rt_study_warp: warp and save ss. -512: Finished! -512: -512: STDERR: -512: Not an error -527: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -527: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125; -527: EXPECTED_ERRNO is -154/578 Test #512: plm-warp-d ............................ Passed 0.58 sec +111: RETVAL: 0 +111: STDOUT: Reconstructing... +111: Processing image 0 +111: Processing image 1 +111: Processing image 2 +111: Processing image 3 +111: Processing image 4 +111: Processing image 5 +111: Processing image 6 +111: Processing image 7 +111: Processing image 8 +111: Processing image 9 +111: Processing image 10 +111: Processing image 11 +111: Processing image 12 +111: Processing image 13 +111: Processing image 14 +111: Processing image 15 +111: Processing image 16 +111: Processing image 17 +111: Processing image 18 +111: Processing image 19 +111: I/O time (total) = 0.0109701 +111: I/O time (per image) = 0.000548506 +111: Filter time = 0 +111: Filter time (per image) = 0 +111: Backprojection time = 5.91921 +111: Backprojection time (per image) = 0.295961 +111: Writing output volume(s)... +111: done. +111: +111: +111: STDERR: +111: Not an error +524: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +524: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf +524: EXPECTED_ERRNO is +153/578 Test #111: fdk-cpu-d ............................. Passed 6.83 sec test 531 Start 531: plm-xf-convert-d-warp-1 531: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 531: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 531: Test timeout computed to be: 1500 -515: RETVAL: 0 -515: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm) -515: Setting PIH from M_IMG -515: PIH is: -515: Origin = -243.4211 -243.4211 -243.4211 -515: Size = 38 38 38 -515: Spacing = 13.1579 13.1579 13.1579 -515: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -515: Rt_study_warp: Warping m_img -515: plm_warp_itk: xform_to_itk_vf -515: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd) -515: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd -515: Rt_study_warp: warp and save ss. -515: Finished! -515: -515: STDERR: -515: Not an error +154/578 Test #489: plm-threshold-a ....................... Passed 0.56 sec +test 534 + Start 534: plm-xf-convert-d-warp-2 + +534: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +534: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +534: Test timeout computed to be: 1500 +527: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +527: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125; +527: EXPECTED_ERRNO is +531: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +531: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd +531: EXPECTED_ERRNO is +534: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +534: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd +534: EXPECTED_ERRNO is 504: RETVAL: 0 504: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) 504: bspline_xform_initialize @@ -9798,61 +9833,115 @@ 504: 504: STDERR: 504: Not an error -531: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -531: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd -531: EXPECTED_ERRNO is -155/578 Test #504: plm-warp-b ............................ Passed 0.76 sec -test 534 - Start 534: plm-xf-convert-d-warp-2 - -534: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -534: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -534: Test timeout computed to be: 1500 -156/578 Test #515: plm-warp-f ............................ Passed 0.58 sec +155/578 Test #504: plm-warp-b ............................ Passed 0.49 sec test 540 Start 540: plm-xf-convert-h 540: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-h" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;vf" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 540: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 540: Test timeout computed to be: 1500 -534: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -534: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd -534: EXPECTED_ERRNO is 540: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 540: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;vf 540: EXPECTED_ERRNO is -501: RETVAL: 0 -501: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) -501: bspline_xform_initialize -501: rdims = (3,3,3) -501: vox_per_rgn = (15,15,15) -501: cdims = (6 6 6) -501: Setting PIH from XFORM -501: PIH is: -501: Origin = -25.0000 -25.0000 -25.0000 -501: Size = 38 38 38 -501: Spacing = 1.3158 1.3158 1.3158 -501: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -501: Rt_study_warp: Warping m_img -501: plm_warp_itk: xform_to_itk_vf -501: plm_warp_itk: convert_to_itk -501: plm_warp_itk: warping... -501: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha) -501: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha -501: Rt_study_warp: Saving vf. -501: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha -501: Rt_study_warp: warp and save ss. -501: Finished! -501: -501: STDERR: -501: Not an error -157/578 Test #501: plm-warp-a ............................ Passed 0.94 sec +512: RETVAL: 0 +512: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) +512: bspline_xform_initialize +512: rdims = (3,3,3) +512: vox_per_rgn = (15,15,15) +512: cdims = (6 6 6) +512: Setting PIH from XFORM +512: PIH is: +512: Origin = -25.0000 -25.0000 -25.0000 +512: Size = 38 38 38 +512: Spacing = 1.3158 1.3158 1.3158 +512: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +512: Rt_study_warp: Warping m_img +512: Running: plm_warp_native +512: Converting input image... +512: Converting xform... +512: bspline_xform_initialize +512: rdims = (3,3,3) +512: vox_per_rgn = (15,15,15) +512: cdims = (6 6 6) +512: Creating output vf... +512: Creating output volume... +512: Running native warper... +512: bspline_warp complete. +512: Back convert to original type... +512: > Convert vf to itk +512: > Conversion complete. +512: plm_warp_native is complete. +512: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha) +512: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha +512: Rt_study_warp: Saving vf. +512: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha +512: Rt_study_warp: warp and save ss. +512: Finished! +512: +512: STDERR: +512: Not an error +509: RETVAL: 0 +509: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) +509: bspline_xform_initialize +509: rdims = (3,3,3) +509: vox_per_rgn = (15,15,15) +509: cdims = (6 6 6) +509: Setting PIH from XFORM +509: PIH is: +509: Origin = -25.0000 -25.0000 -25.0000 +509: Size = 38 38 38 +509: Spacing = 1.3158 1.3158 1.3158 +509: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +509: Rt_study_warp: Warping m_img +509: plm_warp_itk: xform_to_itk_vf +509: plm_warp_itk: convert_to_itk +509: plm_warp_itk: warping... +509: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha) +509: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha +509: Rt_study_warp: Saving vf. +509: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha +509: Rt_study_warp: warp and save ss. +509: Finished! +509: +509: STDERR: +509: Not an error +156/578 Test #512: plm-warp-d ............................ Passed 0.51 sec test 543 Start 543: plm-xf-convert-i 543: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-i" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd;--output-type;vf" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 543: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 543: Test timeout computed to be: 1500 +157/578 Test #509: plm-warp-c ............................ Passed 0.56 sec +test 546 + Start 546: xf-invert-vf-zero-1 + +546: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +546: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +546: Test timeout computed to be: 1500 +543: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +543: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd;--output-type;vf +543: EXPECTED_ERRNO is +515: RETVAL: 0 +515: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm) +515: Setting PIH from M_IMG +515: PIH is: +515: Origin = -243.4211 -243.4211 -243.4211 +515: Size = 38 38 38 +515: Spacing = 13.1579 13.1579 13.1579 +515: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +515: Rt_study_warp: Warping m_img +515: plm_warp_itk: xform_to_itk_vf +515: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd) +515: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd +515: Rt_study_warp: warp and save ss. +515: Finished! +515: +515: STDERR: +515: Not an error +546: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +546: PARMS is xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha +546: EXPECTED_ERRNO is 521: RETVAL: 0 521: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt) 521: Setting PIH from M_IMG @@ -9872,30 +9961,20 @@ 521: 521: STDERR: 521: Not an error -158/578 Test #521: plm-warp-h ............................ Passed 0.59 sec -test 546 - Start 546: xf-invert-vf-zero-1 +158/578 Test #521: plm-warp-h ............................ Passed 0.43 sec +test 549 + Start 549: xf-invert-vf-trans-1 -546: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -546: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -546: Test timeout computed to be: 1500 -543: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -543: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd;--output-type;vf -543: EXPECTED_ERRNO is -546: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -546: PARMS is xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha -546: EXPECTED_ERRNO is -527: RETVAL: 0 -527: STDOUT: bspline_xform_initialize -527: rdims = (1,1,1) -527: vox_per_rgn = (4,4,4) -527: cdims = (4 4 4) -527: about to xform_convert -527: Converting to (itk) vector field -527: did xform_convert -527: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha -527: -527: STDERR: +549: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +549: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +549: Test timeout computed to be: 1500 +159/578 Test #515: plm-warp-f ............................ Passed 0.54 sec +test 556 + Start 556: proton-dose-1 + +556: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +556: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +556: Test timeout computed to be: 1500 518: RETVAL: 0 518: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm) 518: Setting PIH from M_IMG @@ -9914,350 +9993,42 @@ 518: Finished! 518: 518: STDERR: -518: Not an error -527: Not an error -159/578 Test #518: plm-warp-g ............................ Passed 0.76 sec -test 549 - Start 549: xf-invert-vf-trans-1 - -549: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -549: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -549: Test timeout computed to be: 1500 -160/578 Test #527: plm-xf-convert-a ...................... Passed 0.54 sec -test 556 - Start 556: proton-dose-1 - -556: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -556: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -556: Test timeout computed to be: 1500 -427: RETVAL: 0 -427: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -427: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -427: Launching registration worker thread -427: Inside registration worker thread -427: Doing registration stage -427: [1] xf_in->m_type = 0, xf_out->m_type = 0 -427: RESAMPLE 1 1: (1 1 1), (1 1 1) -427: RESAMPLE 1 1: (1 1 1), (1 1 1) -427: volume_calc_grad complete. -427: Computing grid search extent. -427: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) -427: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) -427: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) -427: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) -427: [0 0 0] 18945.9 * -427: Global grid search -427: [-10 -10 -10] 109949 -427: [-6 -10 -10] 96800 -427: [-2 -10 -10] 79011.9 -427: [2 -10 -10] 66244.1 -427: [6 -10 -10] 61932.6 -427: [10 -10 -10] 63642.7 -427: [-10 -6 -10] 95633.9 -427: [-6 -6 -10] 81703.4 -427: [-2 -6 -10] 63642.4 -427: [2 -6 -10] 49838.6 -427: [6 -6 -10] 43366.8 -427: [10 -6 -10] 43154 -427: [-10 -2 -10] 84842.6 -427: [-6 -2 -10] 71049.9 -427: [-2 -2 -10] 53542.3 -427: [2 -2 -10] 39751 -427: [6 -2 -10] 32450.7 -427: [10 -2 -10] 31286.8 -427: [-10 2 -10] 84829.9 -427: [-6 2 -10] 71041.2 -427: [-2 2 -10] 53536.6 -427: [2 2 -10] 39746.7 -427: [6 2 -10] 32446.9 -427: [10 2 -10] 31283.5 -427: [-10 6 -10] 95561.4 -427: [-6 6 -10] 81658.4 -427: [-2 6 -10] 63613.3 -427: [2 6 -10] 49813.8 -427: [6 6 -10] 43342.5 -427: [10 6 -10] 43131.5 -427: [-10 10 -10] 109668 -427: [-6 10 -10] 96633.8 -427: [-2 10 -10] 78907 -427: [2 10 -10] 66152.1 -427: [6 10 -10] 61839.3 -427: [10 10 -10] 63556.7 -427: [-10 -10 -6] 95633.9 -427: [-6 -10 -6] 81703.4 -427: [-2 -10 -6] 63642.4 -427: [2 -10 -6] 49838.6 -427: [6 -10 -6] 43366.8 -427: [10 -10 -6] 43154 -427: [-10 -6 -6] 82028.8 -427: [-6 -6 -6] 67247.9 -427: [-2 -6 -6] 48818.3 -427: [2 -6 -6] 33916.9 -427: [6 -6 -6] 25278 -427: [10 -6 -6] 23165.8 -427: [-10 -2 -6] 72112.1 -427: [-6 -2 -6] 57467.9 -427: [-2 -2 -6] 39558.4 -427: [2 -2 -6] 24681.2 -427: [6 -2 -6] 15293.3 * -427: [10 -2 -6] 12314.7 * -427: [-10 2 -6] 72100.9 -427: [-6 2 -6] 57460.6 -427: [-2 2 -6] 39554 -427: [2 2 -6] 24678.2 -427: [6 2 -6] 15291.1 -427: [10 2 -6] 12313 * -427: [-10 6 -6] 81963.5 -427: [-6 6 -6] 67208.4 -427: [-2 6 -6] 48793.6 -427: [2 6 -6] 33896.7 -427: [6 6 -6] 25258.7 -427: [10 6 -6] 23148.6 -427: [-10 10 -6] 95379.4 -427: [-6 10 -6] 81554.8 -427: [-2 10 -6] 63550.9 -427: [2 10 -6] 49759.6 -427: [6 10 -6] 43287.7 -427: [10 10 -6] 43082.4 -427: [-10 -10 -2] 84842.6 -427: [-6 -10 -2] 71049.9 -427: [-2 -10 -2] 53542.3 -427: [2 -10 -2] 39751 -427: [6 -10 -2] 32450.7 -427: [10 -10 -2] 31286.8 -427: [-10 -6 -2] 72112.1 -427: [-6 -6 -2] 57467.9 -427: [-2 -6 -2] 39558.4 -427: [2 -6 -2] 24681.2 -427: [6 -6 -2] 15293.3 -427: [10 -6 -2] 12314.7 -427: [-10 -2 -2] 63010.9 -427: [-6 -2 -2] 48498.1 -427: [-2 -2 -2] 31072.4 -427: [2 -2 -2] 16224.1 -427: [6 -2 -2] 6155.79 * -427: [10 -2 -2] 2386.22 * -427: [-10 2 -2] 63000.9 -427: [-6 2 -2] 48491.8 -427: [-2 2 -2] 31068.8 -427: [2 2 -2] 16221.9 -427: [6 2 -2] 6154.44 -427: [10 2 -2] 2385.44 * -427: [-10 6 -2] 72052.8 -427: [-6 6 -2] 57432.4 -427: [-2 6 -2] 39536.8 -427: [2 6 -2] 24663.8 -427: [6 6 -2] 15277.1 -427: [10 6 -2] 12300.5 -427: [-10 10 -2] 84610.1 -427: [-6 10 -2] 70915.1 -427: [-2 10 -2] 53460.4 -427: [2 10 -2] 39681 -427: [6 10 -2] 32381 -427: [10 10 -2] 31224.4 -427: [-10 -10 2] 84829.9 -427: [-6 -10 2] 71041.2 -427: [-2 -10 2] 53536.6 -427: [2 -10 2] 39746.7 -427: [6 -10 2] 32446.9 -427: [10 -10 2] 31283.5 -427: [-10 -6 2] 72100.9 -427: [-6 -6 2] 57460.6 -427: [-2 -6 2] 39554 -427: [2 -6 2] 24678.2 -427: [6 -6 2] 15291.1 -427: [10 -6 2] 12313 -427: [-10 -2 2] 63000.9 -427: [-6 -2 2] 48491.8 -427: [-2 -2 2] 31068.8 -427: [2 -2 2] 16221.9 -427: [6 -2 2] 6154.44 -427: [10 -2 2] 2385.44 -427: [-10 2 2] 62990.9 -427: [-6 2 2] 48485.5 -427: [-2 2 2] 31065.2 -427: [2 2 2] 16219.7 -427: [6 2 2] 6153.1 -427: [10 2 2] 2384.66 * -427: [-10 6 2] 72041.7 -427: [-6 6 2] 57425.2 -427: [-2 6 2] 39532.4 -427: [2 6 2] 24660.8 -427: [6 6 2] 15274.9 -427: [10 6 2] 12298.9 -427: [-10 10 2] 84597.7 -427: [-6 10 2] 70906.7 -427: [-2 10 2] 53454.9 -427: [2 10 2] 39676.9 -427: [6 10 2] 32377.5 -427: [10 10 2] 31221.4 -427: [-10 -10 6] 95561.4 -427: [-6 -10 6] 81658.4 -427: [-2 -10 6] 63613.3 -427: [2 -10 6] 49813.8 -427: [6 -10 6] 43342.5 -427: [10 -10 6] 43131.5 -427: [-10 -6 6] 81963.5 -427: [-6 -6 6] 67208.4 -427: [-2 -6 6] 48793.6 -427: [2 -6 6] 33896.7 -427: [6 -6 6] 25258.7 -427: [10 -6 6] 23148.6 -427: [-10 -2 6] 72052.8 -427: [-6 -2 6] 57432.4 -427: [-2 -2 6] 39536.8 -427: [2 -2 6] 24663.8 -427: [6 -2 6] 15277.1 -427: [10 -2 6] 12300.5 -427: [-10 2 6] 72041.7 -427: [-6 2 6] 57425.2 -427: [-2 2 6] 39532.4 -427: [2 2 6] 24660.8 -427: [6 2 6] 15274.9 -427: [10 2 6] 12298.9 -427: [-10 6 6] 81898.9 -427: [-6 6 6] 67169.4 -427: [-2 6 6] 48769.5 -427: [2 6 6] 33876.9 -427: [6 6 6] 25240 -427: [10 6 6] 23132 -427: [-10 10 6] 95309.5 -427: [-6 10 6] 81512.3 -427: [-2 10 6] 63524.1 -427: [2 10 6] 49737.2 -427: [6 10 6] 43266 -427: [10 10 6] 43062.8 -427: [-10 -10 10] 109668 -427: [-6 -10 10] 96633.8 -427: [-2 -10 10] 78907 -427: [2 -10 10] 66152.1 -427: [6 -10 10] 61839.3 -427: [10 -10 10] 63556.7 -427: [-10 -6 10] 95379.4 -427: [-6 -6 10] 81554.8 -427: [-2 -6 10] 63550.9 -427: [2 -6 10] 49759.6 -427: [6 -6 10] 43287.7 -427: [10 -6 10] 43082.4 -427: [-10 -2 10] 84610.1 -427: [-6 -2 10] 70915.1 -427: [-2 -2 10] 53460.4 -427: [2 -2 10] 39681 -427: [6 -2 10] 32381 -427: [10 -2 10] 31224.4 -427: [-10 2 10] 84597.7 -427: [-6 2 10] 70906.7 -427: [-2 2 10] 53454.9 -427: [2 2 10] 39676.9 -427: [6 2 10] 32377.5 -427: [10 2 10] 31221.4 -427: [-10 6 10] 95309.5 -427: [-6 6 10] 81512.3 -427: [-2 6 10] 63524.1 -427: [2 6 10] 49737.2 -427: [6 6 10] 43266 -427: [10 6 10] 43062.8 -427: [-10 10 10] 109399 -427: [-6 10 10] 96478.4 -427: [-2 10 10] 78812.5 -427: [2 10 10] 66070.4 -427: [6 10 10] 61757.4 -427: [10 10 10] 63483 -427: [2] xf_out->m_type = 1, xf_in->m_type = 0 -427: [1] xf_in->m_type = 1, xf_out->m_type = 0 -427: RESAMPLE 1 1: (1 1 1), (1 1 1) -427: RESAMPLE 1 1: (1 1 1), (1 1 1) -427: volume_calc_grad complete. -427: Computing grid search extent. -427: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) -427: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) -427: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) -427: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) -427: [10 2 2] 2384.66 * -427: Local grid search -427: [6.4 -1.6 -1.6] 4439.65 -427: [8.8 -1.6 -1.6] 1771.35 * -427: [11.2 -1.6 -1.6] 1856.67 -427: [13.6 -1.6 -1.6] 4787.36 -427: [6.4 0.8 -1.6] 3954.1 -427: [8.8 0.8 -1.6] 1244.73 * -427: [11.2 0.8 -1.6] 1300.61 -427: [13.6 0.8 -1.6] 4226.79 -427: [6.4 3.2 -1.6] 6520.93 -427: [8.8 3.2 -1.6] 3949.58 -427: [11.2 3.2 -1.6] 4155.43 -427: [13.6 3.2 -1.6] 7178.92 -427: [6.4 5.6 -1.6] 12337.8 -427: [8.8 5.6 -1.6] 10089.9 -427: [11.2 5.6 -1.6] 10636.9 -427: [13.6 5.6 -1.6] 13872 -427: [6.4 -1.6 0.8] 3954.1 -427: [8.8 -1.6 0.8] 1244.73 * -427: [11.2 -1.6 0.8] 1300.61 -427: [13.6 -1.6 0.8] 4226.79 -427: [6.4 0.8 0.8] 3466.53 -427: [8.8 0.8 0.8] 715.907 * -427: [11.2 0.8 0.8] 742.224 -427: [13.6 0.8 0.8] 3663.89 -427: [6.4 3.2 0.8] 6031.02 -427: [8.8 3.2 0.8] 3418.24 -427: [11.2 3.2 0.8] 3594.38 -427: [13.6 3.2 0.8] 6613.31 -427: [6.4 5.6 0.8] 11844.3 -427: [8.8 5.6 0.8] 9554.72 -427: [11.2 5.6 0.8] 10071.8 -427: [13.6 5.6 0.8] 13302.2 -427: [6.4 -1.6 3.2] 6520.93 -427: [8.8 -1.6 3.2] 3949.58 -427: [11.2 -1.6 3.2] 4155.43 -427: [13.6 -1.6 3.2] 7178.92 -427: [6.4 0.8 3.2] 6031.02 -427: [8.8 0.8 3.2] 3418.24 -427: [11.2 0.8 3.2] 3594.38 -427: [13.6 0.8 3.2] 6613.31 -427: [6.4 3.2 3.2] 8673.76 -427: [8.8 3.2 3.2] 6203.3 -427: [11.2 3.2 3.2] 6533.85 -427: [13.6 3.2 3.2] 9652.77 -427: [6.4 5.6 3.2] 14655.7 -427: [8.8 5.6 3.2] 12518.1 -427: [11.2 5.6 3.2] 13199.5 -427: [13.6 5.6 3.2] 16535.7 -427: [6.4 -1.6 5.6] 12337.8 -427: [8.8 -1.6 5.6] 10089.9 -427: [11.2 -1.6 5.6] 10636.9 -427: [13.6 -1.6 5.6] 13872 -427: [6.4 0.8 5.6] 11844.3 -427: [8.8 0.8 5.6] 9554.72 -427: [11.2 0.8 5.6] 10071.8 -427: [13.6 0.8 5.6] 13302.2 -427: [6.4 3.2 5.6] 14655.7 -427: [8.8 3.2 5.6] 12518.1 -427: [11.2 3.2 5.6] 13199.5 -427: [13.6 3.2 5.6] 16535.7 -427: [6.4 5.6 5.6] 20999.9 -427: [8.8 5.6 5.6] 19216 -427: [11.2 5.6 5.6] 20269.6 -427: [13.6 5.6 5.6] 23835.8 -427: [2] xf_out->m_type = 1, xf_in->m_type = 1 -427: ** Registration worker thread finished. -427: Warping... -427: plm_warp_itk: xform_to_itk_vf -427: plm_warp_itk: convert_to_itk -427: plm_warp_itk: warping... -427: Saving image... -427: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha -427: Load: 0.0573699 -427: Run: 2.51671 -427: Save: 0.0136561 -427: Total: 2.58774 -427: Finished! -427: -427: STDERR: -427: Not an error +501: RETVAL: 0 +501: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) +501: bspline_xform_initialize +501: rdims = (3,3,3) +501: vox_per_rgn = (15,15,15) +501: cdims = (6 6 6) +501: Setting PIH from XFORM +501: PIH is: +501: Origin = -25.0000 -25.0000 -25.0000 +501: Size = 38 38 38 +501: Spacing = 1.3158 1.3158 1.3158 +501: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +501: Rt_study_warp: Warping m_img +501: plm_warp_itk: xform_to_itk_vf +501: plm_warp_itk: convert_to_itk +501: plm_warp_itk: warping... +501: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha) +501: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha +501: Rt_study_warp: Saving vf. +501: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha +501: Rt_study_warp: warp and save ss. +501: Finished! +501: +501: STDERR: 549: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 549: PARMS is xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10 549: EXPECTED_ERRNO is +518: Not an error +160/578 Test #518: plm-warp-g ............................ Passed 0.56 sec +test 559 + Start 559: proton-dose-4a + +559: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +559: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +559: Test timeout computed to be: 1500 +501: Not an error 524: RETVAL: 0 524: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt) 524: Setting PIH from M_IMG @@ -10276,59 +10047,18 @@ 524: Finished! 524: 524: STDERR: -524: Not an error -161/578 Test #427: plm-reg-trans-a ....................... Passed 3.43 sec -test 559 - Start 559: proton-dose-4a - -559: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -559: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -559: Test timeout computed to be: 1500 -162/578 Test #524: plm-warp-i ............................ Passed 0.77 sec +161/578 Test #501: plm-warp-a ............................ Passed 0.70 sec test 562 Start 562: proton-dose-4d 562: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 562: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 562: Test timeout computed to be: 1500 +524: Not an error 556: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 556: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt 556: EXPECTED_ERRNO is -111: RETVAL: 0 -111: STDOUT: Reconstructing... -111: Processing image 0 -111: Processing image 1 -111: Processing image 2 -111: Processing image 3 -111: Processing image 4 -111: Processing image 5 -111: Processing image 6 -111: Processing image 7 -111: Processing image 8 -111: Processing image 9 -111: Processing image 10 -111: Processing image 11 -111: Processing image 12 -111: Processing image 13 -111: Processing image 14 -111: Processing image 15 -111: Processing image 16 -111: Processing image 17 -111: Processing image 18 -111: Processing image 19 -111: I/O time (total) = 0.0030911 -111: I/O time (per image) = 0.000154555 -111: Filter time = 0 -111: Filter time (per image) = 0 -111: Backprojection time = 9.6267 -111: Backprojection time (per image) = 0.481335 -111: Writing output volume(s)... -111: done. -111: -111: -111: STDERR: -111: Not an error -163/578 Test #111: fdk-cpu-d ............................. Passed 10.56 sec +162/578 Test #524: plm-warp-i ............................ Passed 0.46 sec test 565 Start 565: proton-dose-5a @@ -10338,87 +10068,31 @@ 559: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 559: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt 559: EXPECTED_ERRNO is +527: RETVAL: 0 +527: STDOUT: bspline_xform_initialize +527: rdims = (1,1,1) +527: vox_per_rgn = (4,4,4) +527: cdims = (4 4 4) +527: about to xform_convert +527: Converting to (itk) vector field +527: did xform_convert +527: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha +527: +527: STDERR: +527: Not an error 562: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 562: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.txt 562: EXPECTED_ERRNO is -565: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -565: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.txt -565: EXPECTED_ERRNO is -509: RETVAL: 0 -509: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) -509: bspline_xform_initialize -509: rdims = (3,3,3) -509: vox_per_rgn = (15,15,15) -509: cdims = (6 6 6) -509: Setting PIH from XFORM -509: PIH is: -509: Origin = -25.0000 -25.0000 -25.0000 -509: Size = 38 38 38 -509: Spacing = 1.3158 1.3158 1.3158 -509: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -509: Rt_study_warp: Warping m_img -509: plm_warp_itk: xform_to_itk_vf -509: plm_warp_itk: convert_to_itk -509: plm_warp_itk: warping... -509: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha) -509: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha -509: Rt_study_warp: Saving vf. -509: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha -509: Rt_study_warp: warp and save ss. -509: Finished! -509: -509: STDERR: -509: Not an error -164/578 Test #509: plm-warp-c ............................ Passed 1.17 sec +163/578 Test #527: plm-xf-convert-a ...................... Passed 0.49 sec test 568 Start 568: proton-dose-5d 568: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 568: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 568: Test timeout computed to be: 1500 -568: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -568: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt -568: EXPECTED_ERRNO is -543: RETVAL: 0 -543: STDOUT: bspline_xform_initialize -543: rdims = (1,1,1) -543: vox_per_rgn = (4,4,4) -543: cdims = (4 4 4) -543: about to xform_convert -543: Converting to (itk) vector field -543: did xform_convert -543: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd -543: -543: STDERR: -543: Not an error -165/578 Test #543: plm-xf-convert-i ...................... Passed 0.48 sec -test 571 - Start 571: proton-dose-6a - -571: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -571: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -571: Test timeout computed to be: 1500 -571: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -571: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt -571: EXPECTED_ERRNO is -540: RETVAL: 0 -540: STDOUT: about to xform_convert -540: Converting to (itk) vector field -540: did xform_convert -540: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd -540: -540: STDERR: -540: Not an error -166/578 Test #540: plm-xf-convert-h ...................... Passed 0.63 sec -test 39 - Start 39: rect-10 - -39: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -39: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -39: Test timeout computed to be: 1500 -39: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -39: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50 -39: EXPECTED_ERRNO is +565: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +565: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.txt +565: EXPECTED_ERRNO is 430: RETVAL: 0 430: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 430: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -10737,41 +10411,24 @@ 430: plm_warp_itk: warping... 430: Saving image... 430: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha -430: Load: 0.141932 -430: Run: 2.46007 -430: Save: 0.034543 -430: Total: 2.63654 +430: Load: 0.0905941 +430: Run: 1.75309 +430: Save: 0.0120242 +430: Total: 1.85571 430: Finished! 430: 430: STDERR: 430: Not an error -549: RETVAL: 0 -549: STDOUT: Paste and smooth loop -549: Iteration 0/10 -549: Convolving -549: Iteration 1/10 -549: Convolving -549: Iteration 2/10 -549: Convolving -549: Iteration 3/10 -549: Convolving -549: Iteration 4/10 -549: Convolving -549: Iteration 5/10 -549: Convolving -549: Iteration 6/10 -549: Convolving -549: Iteration 7/10 -549: Convolving -549: Iteration 8/10 -549: Convolving -549: Iteration 9/10 -549: Convolving -549: Done. -549: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha -549: -549: STDERR: -549: Not an error +164/578 Test #430: plm-reg-trans-b ....................... Passed 2.62 sec +test 571 + Start 571: proton-dose-6a + +571: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +571: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +571: Test timeout computed to be: 1500 +568: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +568: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt +568: EXPECTED_ERRNO is 531: RETVAL: 0 531: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt) 531: bspline_xform_initialize @@ -10806,91 +10463,367 @@ 531: Finished! 531: 531: STDERR: -167/578 Test #430: plm-reg-trans-b ....................... Passed 3.37 sec +427: RETVAL: 0 +427: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +427: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +427: Launching registration worker thread +427: Inside registration worker thread +427: Doing registration stage +427: [1] xf_in->m_type = 0, xf_out->m_type = 0 +427: RESAMPLE 1 1: (1 1 1), (1 1 1) +427: RESAMPLE 1 1: (1 1 1), (1 1 1) +427: volume_calc_grad complete. +427: Computing grid search extent. +427: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) +427: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) +427: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) +427: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) +427: [0 0 0] 18945.9 * +427: Global grid search +427: [-10 -10 -10] 109949 +427: [-6 -10 -10] 96800 +427: [-2 -10 -10] 79011.9 +427: [2 -10 -10] 66244.1 +427: [6 -10 -10] 61932.6 +427: [10 -10 -10] 63642.7 +427: [-10 -6 -10] 95633.9 +427: [-6 -6 -10] 81703.4 +427: [-2 -6 -10] 63642.4 +427: [2 -6 -10] 49838.6 +427: [6 -6 -10] 43366.8 +427: [10 -6 -10] 43154 +427: [-10 -2 -10] 84842.6 +427: [-6 -2 -10] 71049.9 +427: [-2 -2 -10] 53542.3 +427: [2 -2 -10] 39751 +427: [6 -2 -10] 32450.7 +427: [10 -2 -10] 31286.8 +427: [-10 2 -10] 84829.9 +427: [-6 2 -10] 71041.2 +427: [-2 2 -10] 53536.6 +427: [2 2 -10] 39746.7 +427: [6 2 -10] 32446.9 +427: [10 2 -10] 31283.5 +427: [-10 6 -10] 95561.4 +427: [-6 6 -10] 81658.4 +427: [-2 6 -10] 63613.3 +427: [2 6 -10] 49813.8 +427: [6 6 -10] 43342.5 +427: [10 6 -10] 43131.5 +427: [-10 10 -10] 109668 +427: [-6 10 -10] 96633.8 +427: [-2 10 -10] 78907 +427: [2 10 -10] 66152.1 +427: [6 10 -10] 61839.3 +427: [10 10 -10] 63556.7 +427: [-10 -10 -6] 95633.9 +427: [-6 -10 -6] 81703.4 +427: [-2 -10 -6] 63642.4 +427: [2 -10 -6] 49838.6 +427: [6 -10 -6] 43366.8 +427: [10 -10 -6] 43154 +427: [-10 -6 -6] 82028.8 +427: [-6 -6 -6] 67247.9 +427: [-2 -6 -6] 48818.3 +427: [2 -6 -6] 33916.9 +427: [6 -6 -6] 25278 +427: [10 -6 -6] 23165.8 +427: [-10 -2 -6] 72112.1 +427: [-6 -2 -6] 57467.9 +427: [-2 -2 -6] 39558.4 +427: [2 -2 -6] 24681.2 +427: [6 -2 -6] 15293.3 * +427: [10 -2 -6] 12314.7 * +427: [-10 2 -6] 72100.9 +427: [-6 2 -6] 57460.6 +427: [-2 2 -6] 39554 +427: [2 2 -6] 24678.2 +427: [6 2 -6] 15291.1 +427: [10 2 -6] 12313 * +427: [-10 6 -6] 81963.5 +427: [-6 6 -6] 67208.4 +427: [-2 6 -6] 48793.6 +427: [2 6 -6] 33896.7 +427: [6 6 -6] 25258.7 +427: [10 6 -6] 23148.6 +427: [-10 10 -6] 95379.4 +427: [-6 10 -6] 81554.8 +427: [-2 10 -6] 63550.9 +427: [2 10 -6] 49759.6 +427: [6 10 -6] 43287.7 +427: [10 10 -6] 43082.4 +427: [-10 -10 -2] 84842.6 +427: [-6 -10 -2] 71049.9 +427: [-2 -10 -2] 53542.3 +427: [2 -10 -2] 39751 +427: [6 -10 -2] 32450.7 +427: [10 -10 -2] 31286.8 +427: [-10 -6 -2] 72112.1 +427: [-6 -6 -2] 57467.9 +427: [-2 -6 -2] 39558.4 +427: [2 -6 -2] 24681.2 +427: [6 -6 -2] 15293.3 +427: [10 -6 -2] 12314.7 +427: [-10 -2 -2] 63010.9 +427: [-6 -2 -2] 48498.1 +427: [-2 -2 -2] 31072.4 +427: [2 -2 -2] 16224.1 +427: [6 -2 -2] 6155.79 * +427: [10 -2 -2] 2386.22 * +427: [-10 2 -2] 63000.9 +427: [-6 2 -2] 48491.8 +427: [-2 2 -2] 31068.8 +427: [2 2 -2] 16221.9 +427: [6 2 -2] 6154.44 +427: [10 2 -2] 2385.44 * +427: [-10 6 -2] 72052.8 +427: [-6 6 -2] 57432.4 +427: [-2 6 -2] 39536.8 +427: [2 6 -2] 24663.8 +427: [6 6 -2] 15277.1 +427: [10 6 -2] 12300.5 +427: [-10 10 -2] 84610.1 +427: [-6 10 -2] 70915.1 +427: [-2 10 -2] 53460.4 +427: [2 10 -2] 39681 +427: [6 10 -2] 32381 +427: [10 10 -2] 31224.4 +427: [-10 -10 2] 84829.9 +427: [-6 -10 2] 71041.2 +427: [-2 -10 2] 53536.6 +427: [2 -10 2] 39746.7 +427: [6 -10 2] 32446.9 +427: [10 -10 2] 31283.5 +427: [-10 -6 2] 72100.9 +427: [-6 -6 2] 57460.6 +427: [-2 -6 2] 39554 +427: [2 -6 2] 24678.2 +427: [6 -6 2] 15291.1 +427: [10 -6 2] 12313 +427: [-10 -2 2] 63000.9 +427: [-6 -2 2] 48491.8 +427: [-2 -2 2] 31068.8 +427: [2 -2 2] 16221.9 +427: [6 -2 2] 6154.44 +427: [10 -2 2] 2385.44 +427: [-10 2 2] 62990.9 +427: [-6 2 2] 48485.5 +427: [-2 2 2] 31065.2 +427: [2 2 2] 16219.7 +427: [6 2 2] 6153.1 +427: [10 2 2] 2384.66 * +427: [-10 6 2] 72041.7 +427: [-6 6 2] 57425.2 +427: [-2 6 2] 39532.4 +427: [2 6 2] 24660.8 +427: [6 6 2] 15274.9 +427: [10 6 2] 12298.9 +427: [-10 10 2] 84597.7 +427: [-6 10 2] 70906.7 +427: [-2 10 2] 53454.9 +427: [2 10 2] 39676.9 +427: [6 10 2] 32377.5 +427: [10 10 2] 31221.4 +427: [-10 -10 6] 95561.4 +427: [-6 -10 6] 81658.4 +427: [-2 -10 6] 63613.3 +427: [2 -10 6] 49813.8 +427: [6 -10 6] 43342.5 +427: [10 -10 6] 43131.5 +427: [-10 -6 6] 81963.5 +427: [-6 -6 6] 67208.4 +427: [-2 -6 6] 48793.6 +427: [2 -6 6] 33896.7 +427: [6 -6 6] 25258.7 +427: [10 -6 6] 23148.6 +427: [-10 -2 6] 72052.8 +427: [-6 -2 6] 57432.4 +427: [-2 -2 6] 39536.8 +427: [2 -2 6] 24663.8 +427: [6 -2 6] 15277.1 +427: [10 -2 6] 12300.5 +427: [-10 2 6] 72041.7 +427: [-6 2 6] 57425.2 +427: [-2 2 6] 39532.4 +427: [2 2 6] 24660.8 +427: [6 2 6] 15274.9 +427: [10 2 6] 12298.9 +427: [-10 6 6] 81898.9 +427: [-6 6 6] 67169.4 +427: [-2 6 6] 48769.5 +427: [2 6 6] 33876.9 +427: [6 6 6] 25240 +427: [10 6 6] 23132 +427: [-10 10 6] 95309.5 +427: [-6 10 6] 81512.3 +427: [-2 10 6] 63524.1 +427: [2 10 6] 49737.2 +427: [6 10 6] 43266 +427: [10 10 6] 43062.8 +427: [-10 -10 10] 109668 +427: [-6 -10 10] 96633.8 +427: [-2 -10 10] 78907 +427: [2 -10 10] 66152.1 +427: [6 -10 10] 61839.3 +427: [10 -10 10] 63556.7 +427: [-10 -6 10] 95379.4 +427: [-6 -6 10] 81554.8 +427: [-2 -6 10] 63550.9 +427: [2 -6 10] 49759.6 +427: [6 -6 10] 43287.7 +427: [10 -6 10] 43082.4 +427: [-10 -2 10] 84610.1 +427: [-6 -2 10] 70915.1 +427: [-2 -2 10] 53460.4 +427: [2 -2 10] 39681 +427: [6 -2 10] 32381 +427: [10 -2 10] 31224.4 +427: [-10 2 10] 84597.7 +427: [-6 2 10] 70906.7 +427: [-2 2 10] 53454.9 +427: [2 2 10] 39676.9 +427: [6 2 10] 32377.5 +427: [10 2 10] 31221.4 +427: [-10 6 10] 95309.5 +427: [-6 6 10] 81512.3 +427: [-2 6 10] 63524.1 +427: [2 6 10] 49737.2 +427: [6 6 10] 43266 +427: [10 6 10] 43062.8 +427: [-10 10 10] 109399 +427: [-6 10 10] 96478.4 +427: [-2 10 10] 78812.5 +427: [2 10 10] 66070.4 +427: [6 10 10] 61757.4 +427: [10 10 10] 63483 +427: [2] xf_out->m_type = 1, xf_in->m_type = 0 +427: [1] xf_in->m_type = 1, xf_out->m_type = 0 +427: RESAMPLE 1 1: (1 1 1), (1 1 1) +427: RESAMPLE 1 1: (1 1 1), (1 1 1) +427: volume_calc_grad complete. +427: Computing grid search extent. +427: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) +427: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) +427: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) +427: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) +427: [10 2 2] 2384.66 * +427: Local grid search +427: [6.4 -1.6 -1.6] 4439.65 +427: [8.8 -1.6 -1.6] 1771.35 * +427: [11.2 -1.6 -1.6] 1856.67 +427: [13.6 -1.6 -1.6] 4787.36 +427: [6.4 0.8 -1.6] 3954.1 +427: [8.8 0.8 -1.6] 1244.73 * +427: [11.2 0.8 -1.6] 1300.61 +427: [13.6 0.8 -1.6] 4226.79 +427: [6.4 3.2 -1.6] 6520.93 +427: [8.8 3.2 -1.6] 3949.58 +427: [11.2 3.2 -1.6] 4155.43 +427: [13.6 3.2 -1.6] 7178.92 +427: [6.4 5.6 -1.6] 12337.8 +427: [8.8 5.6 -1.6] 10089.9 +427: [11.2 5.6 -1.6] 10636.9 +427: [13.6 5.6 -1.6] 13872 +427: [6.4 -1.6 0.8] 3954.1 +427: [8.8 -1.6 0.8] 1244.73 * +427: [11.2 -1.6 0.8] 1300.61 +427: [13.6 -1.6 0.8] 4226.79 +427: [6.4 0.8 0.8] 3466.53 +427: [8.8 0.8 0.8] 715.907 * +427: [11.2 0.8 0.8] 742.224 +427: [13.6 0.8 0.8] 3663.89 +427: [6.4 3.2 0.8] 6031.02 +427: [8.8 3.2 0.8] 3418.24 +427: [11.2 3.2 0.8] 3594.38 +427: [13.6 3.2 0.8] 6613.31 +427: [6.4 5.6 0.8] 11844.3 +427: [8.8 5.6 0.8] 9554.72 +427: [11.2 5.6 0.8] 10071.8 +427: [13.6 5.6 0.8] 13302.2 +427: [6.4 -1.6 3.2] 6520.93 +427: [8.8 -1.6 3.2] 3949.58 +427: [11.2 -1.6 3.2] 4155.43 +427: [13.6 -1.6 3.2] 7178.92 +427: [6.4 0.8 3.2] 6031.02 +427: [8.8 0.8 3.2] 3418.24 +427: [11.2 0.8 3.2] 3594.38 +427: [13.6 0.8 3.2] 6613.31 +427: [6.4 3.2 3.2] 8673.76 +427: [8.8 3.2 3.2] 6203.3 +427: [11.2 3.2 3.2] 6533.85 +427: [13.6 3.2 3.2] 9652.77 +427: [6.4 5.6 3.2] 14655.7 +427: [8.8 5.6 3.2] 12518.1 +427: [11.2 5.6 3.2] 13199.5 +427: [13.6 5.6 3.2] 16535.7 +427: [6.4 -1.6 5.6] 12337.8 +427: [8.8 -1.6 5.6] 10089.9 +427: [11.2 -1.6 5.6] 10636.9 +427: [13.6 -1.6 5.6] 13872 +427: [6.4 0.8 5.6] 11844.3 +427: [8.8 0.8 5.6] 9554.72 +427: [11.2 0.8 5.6] 10071.8 +427: [13.6 0.8 5.6] 13302.2 +427: [6.4 3.2 5.6] 14655.7 +427: [8.8 3.2 5.6] 12518.1 +427: [11.2 3.2 5.6] 13199.5 +427: [13.6 3.2 5.6] 16535.7 +427: [6.4 5.6 5.6] 20999.9 +427: [8.8 5.6 5.6] 19216 +427: [11.2 5.6 5.6] 20269.6 +427: [13.6 5.6 5.6] 23835.8 +427: [2] xf_out->m_type = 1, xf_in->m_type = 1 +427: ** Registration worker thread finished. +427: Warping... +427: plm_warp_itk: xform_to_itk_vf +427: plm_warp_itk: convert_to_itk +427: plm_warp_itk: warping... +427: Saving image... +427: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha +427: Load: 0.207729 +427: Run: 1.58306 +427: Save: 0.0104849 +427: Total: 1.80128 +427: Finished! +427: +427: STDERR: +427: Not an error +531: Not an error +571: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +571: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt +571: EXPECTED_ERRNO is +165/578 Test #427: plm-reg-trans-a ....................... Passed 2.81 sec +test 39 + Start 39: rect-10 + +39: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +39: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +39: Test timeout computed to be: 1500 +166/578 Test #531: plm-xf-convert-d-warp-1 ............... Passed 0.60 sec test 42 Start 42: rect-11 42: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-11" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 42: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 42: Test timeout computed to be: 1500 -531: Not an error -168/578 Test #531: plm-xf-convert-d-warp-1 ............... Passed 0.81 sec +540: RETVAL: 0 +540: STDOUT: about to xform_convert +540: Converting to (itk) vector field +540: did xform_convert +540: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd +540: +540: STDERR: +39: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +39: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50 +39: EXPECTED_ERRNO is +540: Not an error +167/578 Test #540: plm-xf-convert-h ...................... Passed 0.42 sec test 51 Start 51: rect-19 51: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-19" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 51: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 51: Test timeout computed to be: 1500 -169/578 Test #549: xf-invert-vf-trans-1 .................. Passed 0.50 sec -test 53 - Start 53: rectarr-01 - -53: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-01" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -53: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -53: Test timeout computed to be: 1500 -546: RETVAL: 0 -546: STDOUT: Paste and smooth loop -546: Iteration 0/20 -546: Convolving -546: Iteration 1/20 -546: Convolving -546: Iteration 2/20 -546: Convolving -546: Iteration 3/20 -546: Convolving -546: Iteration 4/20 -546: Convolving -546: Iteration 5/20 -546: Convolving -546: Iteration 6/20 -546: Convolving -546: Iteration 7/20 -546: Convolving -546: Iteration 8/20 -546: Convolving -546: Iteration 9/20 -546: Convolving -546: Iteration 10/20 -546: Convolving -546: Iteration 11/20 -546: Convolving -546: Iteration 12/20 -546: Convolving -546: Iteration 13/20 -546: Convolving -546: Iteration 14/20 -546: Convolving -546: Iteration 15/20 -546: Convolving -546: Iteration 16/20 -546: Convolving -546: Iteration 17/20 -546: Convolving -546: Iteration 18/20 -546: Convolving -546: Iteration 19/20 -546: Convolving -546: Done. -546: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha -546: -546: STDERR: -546: Not an error -42: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -42: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60 -42: EXPECTED_ERRNO is -170/578 Test #546: xf-invert-vf-zero-1 ................... Passed 0.65 sec -test 54 - Start 54: rectarr-02 - -54: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-02" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -54: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -54: Test timeout computed to be: 1500 -51: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -51: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150 -51: EXPECTED_ERRNO is -54: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -54: PARMS is synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5 -54: EXPECTED_ERRNO is 409: RETVAL: 0 409: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 409: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha @@ -10917,18 +10850,18 @@ 409: Initial Parameters = [0, 0, 0, 0, 0, 0] 409: Starting ITK registration 409: StartEvent: [0, 0, 0, 0, 0, 0] -409: MSE [ 0, 0,10.00] 2961.438 [0, -8.106231689300783e-8, 8.106231689440044e-8, -9.999999999999998, -4.351980104194578e-15, -4.526059308362361e-15] +409: MSE [ 0, 0,10.00] 2961.438 [2.1249902852512537e-23, -8.106231689300783e-8, 8.106231689440044e-8, -9.999999999999996, -4.0038216958590105e-15, -4.177900900026794e-15] 409: :: [0, 0, 0, 0, 0, 0] 409: * -409: MSE [ 1, 1,10.00] 2086.091 [-2.220551443958773e-18, -3.349986047566596e-7, 3.3499860572590214e-7, -19.999999999999872, -9.942357122250369e-7, -9.942357133705733e-7] -875.35 -409: :: [0, -8.106231689300783e-8, 8.106231689440044e-8, -9.999999999999998, -4.351980104194578e-15, -4.526059308362361e-15] +409: MSE [ 1, 1,10.00] 2086.091 [-2.2205298185013314e-18, -3.349986047568699e-7, 3.349986057214795e-7, -19.999999999999872, -9.9423571118298e-7, -9.942357120509572e-7] -875.35 +409: :: [2.1249902852512537e-23, -8.106231689300783e-8, 8.106231689440044e-8, -9.999999999999996, -4.0038216958590105e-15, -4.177900900026794e-15] 409: * -409: MSE [ 2, 2, 5.00] 1944.674 [-1.8497462815408412e-17, -0.0000020387763678231676, 0.000002038776387402911, -15.000000000094076, -0.00002242796102608393, -0.000022427960967426466] -141.42 -409: :: [-2.220551443958773e-18, -3.349986047566596e-7, 3.3499860572590214e-7, -19.999999999999872, -9.942357122250369e-7, -9.942357133705733e-7] +409: MSE [ 2, 2, 5.00] 1944.674 [-1.9957785024470283e-17, -0.000002038776367804276, 0.0000020387763874089956, -15.000000000094076, -0.000022427961022415327, -0.000022427960964674192] -141.42 +409: :: [-2.2205298185013314e-18, -3.349986047568699e-7, 3.349986057214795e-7, -19.999999999999872, -9.9423571118298e-7, -9.942357120509572e-7] 409: * -409: MSE [ 3, 3, 2.50] 1989.993 [-7.843423609559688e-17, -0.000008253984619629492, 0.000008253984726215031, -17.499999999592845, -0.00005557255691122543, -0.00005557255639912923] 45.32 -409: MSE [ 4, 4, 2.50] 1946.484 [-1.448950225512847e-14, -0.0010533617729250892, 0.0010533617928090062, -19.999966305224685, -0.008992370045635845, -0.008992369921077301] -43.51 -409: EndEvent: [-1.448950225512847e-14, -0.0010533617729250892, 0.0010533617928090062, -19.999966305224685, -0.008992370045635845, -0.008992369921077301] +409: MSE [ 3, 3, 2.50] 1989.993 [-8.785641913405714e-17, -0.000008253984619362118, 0.00000825398472625445, -17.499999999592845, -0.0000555725569053301, -0.000055572556397062066] 45.32 +409: MSE [ 4, 4, 2.50] 1946.484 [-1.7585120327959246e-14, -0.0010533617728833607, 0.001053361792799982, -19.999966305224685, -0.008992370046288408, -0.00899236992082999] -43.51 +409: EndEvent: [-1.7585120327959246e-14, -0.0010533617728833607, 0.001053361792799982, -19.999966305224685, -0.008992370046288408, -0.00899236992082999] 409: VersorRigid3DTransformOptimizer: Maximum number of iterations (5) exceeded. 409: ITK registration complete 409: [2] xf_out->m_type = 2, xf_in->m_type = 0 @@ -10945,12 +10878,12 @@ 409: kerx: 0.0000000000 1.0000000000 0.0000000000 409: kery: 0.0000000000 1.0000000000 0.0000000000 409: kerz: 0.0000000000 1.0000000000 0.0000000000 -409: MSE [ 0] 4770.7 (0.947) [ 0.971 secs] -409: MSE [ 1] 4770.7 (0.947) [ 0.632 secs] -409: MSE [ 2] 4770.7 (0.947) [ 0.324 secs] -409: MSE [ 3] 4770.7 (0.947) [ 0.425 secs] -409: MSE [ 4] 4770.7 (0.947) [ 0.559 secs] -409: Time for 5 iterations = 2.910735 (0.582147 sec / it) +409: MSE [ 0] 4770.7 (0.947) [ 0.448 secs] +409: MSE [ 1] 4770.7 (0.947) [ 0.546 secs] +409: MSE [ 2] 4770.7 (0.947) [ 0.437 secs] +409: MSE [ 3] 4770.7 (0.947) [ 0.299 secs] +409: MSE [ 4] 4770.7 (0.947) [ 0.277 secs] +409: Time for 5 iterations = 2.007268 (0.401454 sec / it) 409: [2] xf_out->m_type = 10, xf_in->m_type = 2 409: ** Registration worker thread finished. 409: Warping... @@ -10961,39 +10894,158 @@ 409: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-img.nrrd 409: Saving vf... 409: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd -409: Load: 0.184194 -409: Run: 3.11153 -409: Save: 0.039763 -409: Total: 3.33549 +409: Load: 0.27782 +409: Run: 2.20516 +409: Save: 0.0237341 +409: Total: 2.50671 409: Finished! 409: 409: STDERR: +42: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +42: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60 +42: EXPECTED_ERRNO is 409: Not an error -53: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -53: PARMS is synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5 -53: EXPECTED_ERRNO is -171/578 Test #409: plm-reg-multi-a ....................... Passed 4.71 sec +168/578 Test #409: plm-reg-multi-a ....................... Passed 3.38 sec +test 53 + Start 53: rectarr-01 + +53: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-01" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +53: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +53: Test timeout computed to be: 1500 +534: RETVAL: 0 +534: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm) +534: BSplineDeformableTransform (0x55c7b9e4b160) +534: RTTI typeinfo: itk::BSplineDeformableTransform +534: Reference Count: 3 +534: Modified Time: 1488 +534: Debug: Off +534: Object Name: +534: Observers: +534: none +534: CoefficientImage: [ 0x55c7b9e46530, 0x55c7b9e47550, 0x55c7b9e418f0 ] +534: ValidRegion: ImageRegion (0x55c7b9e4b2b0) +534: Dimension: 3 +534: Index: [1, 1, 1] +534: Size: [3, 3, 3] +534: +534: BulkTransform: 0x55c7b9c289b0 +534: WeightsFunction: 0x55c7b9ca1630 +534: BulkTransformType: IdentityTransform +534: GridOrigin: [-53.2895, -53.2895, -53.2895] +534: GridSpacing: [28.9474, 28.9474, 28.9474] +534: GridDirection: 1 0 0 +534: 0 1 0 +534: 0 0 1 +534: +534: GridRegion: ImageRegion (0x55c7b9e46738) +534: Dimension: 3 +534: Index: [0, 0, 0] +534: Size: [5, 5, 5] +534: +534: Setting PIH from M_IMG +534: PIH is: +534: Origin = -25.0000 -25.0000 -25.0000 +534: Size = 38 38 38 +534: Spacing = 1.3158 1.3158 1.3158 +534: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +534: Rt_study_warp: Warping m_img +534: plm_warp_itk: xform_to_itk_vf +534: plm_warp_itk: convert_to_itk +534: plm_warp_itk: warping... +534: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd) +534: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd +534: Rt_study_warp: warp and save ss. +534: Finished! +534: +534: STDERR: +543: RETVAL: 0 +543: STDOUT: bspline_xform_initialize +543: rdims = (1,1,1) +543: vox_per_rgn = (4,4,4) +543: cdims = (4 4 4) +543: about to xform_convert +543: Converting to (itk) vector field +543: did xform_convert +543: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd +543: +543: STDERR: +543: Not an error +169/578 Test #543: plm-xf-convert-i ...................... Passed 0.41 sec +test 54 + Start 54: rectarr-02 + +54: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-02" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +54: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +54: Test timeout computed to be: 1500 +534: Not an error +170/578 Test #534: plm-xf-convert-d-warp-2 ............... Passed 0.70 sec test 55 Start 55: rectarr-m-01 55: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-m-01" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 -20 0 -13 13" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 55: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 55: Test timeout computed to be: 1500 +51: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +51: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150 +51: EXPECTED_ERRNO is +53: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +53: PARMS is synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5 +53: EXPECTED_ERRNO is +54: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +54: PARMS is synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5 +54: EXPECTED_ERRNO is 55: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 55: PARMS is synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 -20 0 -13 13 55: EXPECTED_ERRNO is -39: RETVAL: 0 -39: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha -39: -39: STDERR: -39: Not an error -172/578 Test #39: rect-10 ............................... Passed 0.38 sec +549: RETVAL: 0 +549: STDOUT: Paste and smooth loop +549: Iteration 0/10 +549: Convolving +549: Iteration 1/10 +549: Convolving +549: Iteration 2/10 +549: Convolving +549: Iteration 3/10 +549: Convolving +549: Iteration 4/10 +549: Convolving +549: Iteration 5/10 +549: Convolving +549: Iteration 6/10 +549: Convolving +549: Iteration 7/10 +549: Convolving +549: Iteration 8/10 +549: Convolving +549: Iteration 9/10 +549: Convolving +549: Done. +549: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha +549: +549: STDERR: +549: Not an error +171/578 Test #549: xf-invert-vf-trans-1 .................. Passed 0.48 sec test 56 Start 56: rectarr-m-02 56: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-m-02" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 0 20 -13 13" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 56: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 56: Test timeout computed to be: 1500 +56: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +56: PARMS is synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 0 20 -13 13 +56: EXPECTED_ERRNO is +51: RETVAL: 0 +51: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha +51: +51: STDERR: +51: Not an error +172/578 Test #51: rect-19 ............................... Passed 0.36 sec +test 61 + Start 61: roi-1 + +61: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=roi-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;0 300 -300 300 -300 300" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +61: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +61: Test timeout computed to be: 1500 375: RETVAL: 0 375: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 375: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha @@ -11028,28 +11080,28 @@ 375: Setting nmax, mmax = 6591 83 375: >>> START 375: This problem is unconstrained. -375: [ 0, 0] SCORE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 1.510 s ] -375: MSE 5540.166 RM 0.000 [ 0.088 | 1.422 ] +375: [ 0, 0] SCORE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 1.411 s ] +375: MSE 5540.166 RM 0.000 [ 0.104 | 1.307 ] 375: CMIN 0.00 CAVG 0.00 CMAX 0.00 375: LSD 0.00 -375: [ 0, 1] SCORE 5484.185 NV 54872 GM 0.045 GN 27.7 [ 1.212 s ] -375: MSE 5484.124 RM 0.061 [ 0.058 | 1.153 ] +375: [ 0, 1] SCORE 5484.185 NV 54872 GM 0.045 GN 27.7 [ 0.887 s ] +375: MSE 5484.124 RM 0.061 [ 0.024 | 0.863 ] 375: CMIN -0.16 CAVG -0.00 CMAX 0.22 375: LSD 1.00 -375: [ 0, 2] SCORE 5267.761 NV 54872 GM 0.224 GN 25.8 [ 0.470 s ] -375: MSE 5266.236 RM 1.525 [ 0.029 | 0.441 ] +375: [ 0, 2] SCORE 5267.761 NV 54872 GM 0.224 GN 25.8 [ 0.462 s ] +375: MSE 5266.236 RM 1.525 [ 0.012 | 0.450 ] 375: CMIN -0.81 CAVG 0.00 CMAX 1.12 375: LSD 5.00 -375: [ 0, 3] SCORE 4511.430 NV 54872 GM 0.928 GN 18.4 [ 0.425 s ] -375: MSE 4484.536 RM 26.894 [ 0.023 | 0.401 ] +375: [ 0, 3] SCORE 4511.430 NV 54872 GM 0.928 GN 18.4 [ 0.339 s ] +375: MSE 4484.536 RM 26.894 [ 0.013 | 0.326 ] 375: CMIN -3.39 CAVG 0.00 CMAX 4.70 375: LSD 21.00 -375: [ 1, 4] SCORE 3229.400 NV 54872 GM 1.898 GN 2.39 [ 0.459 s ] -375: MSE 3018.981 RM 210.419 [ 0.022 | 0.438 ] +375: [ 1, 4] SCORE 3229.400 NV 54872 GM 1.898 GN 2.39 [ 0.466 s ] +375: MSE 3018.981 RM 210.419 [ 0.012 | 0.454 ] 375: CMIN -9.73 CAVG -0.00 CMAX 13.18 375: LSD 40.25 -375: [ 2, 5] SCORE 3185.099 NV 54872 GM 4.098 GN 2.08 [ 0.626 s ] -375: MSE 2976.101 RM 208.998 [ 0.021 | 0.604 ] +375: [ 2, 5] SCORE 3185.099 NV 54872 GM 4.098 GN 2.08 [ 0.323 s ] +375: MSE 2976.101 RM 208.998 [ 0.012 | 0.311 ] 375: CMIN -9.60 CAVG -0.00 CMAX 13.44 375: LSD 5.50 375: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -11075,159 +11127,144 @@ 375: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-img.mha 375: Saving vf... 375: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha -375: Load: 0.278676 -375: Run: 4.98448 -375: Save: 0.104934 -375: Total: 5.36809 +375: Load: 0.229607 +375: Run: 4.07623 +375: Save: 0.084166 +375: Total: 4.39 375: Finished! 375: 375: STDERR: 375: Not an error -173/578 Test #375: plm-bsp-regularize-numeric ............ Passed 6.43 sec -test 61 - Start 61: roi-1 - -61: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=roi-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;0 300 -300 300 -300 300" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -61: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -61: Test timeout computed to be: 1500 -56: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -56: PARMS is synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 0 20 -13 13 -56: EXPECTED_ERRNO is -61: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -61: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;0 300 -300 300 -300 300 -61: EXPECTED_ERRNO is -42: RETVAL: 0 -42: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha -42: -42: STDERR: -42: Not an error -174/578 Test #42: rect-11 ............................... Passed 0.40 sec +173/578 Test #375: plm-bsp-regularize-numeric ............ Passed 4.97 sec test 65 Start 65: sphere-4 65: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-4" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;150 150 150" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 65: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 65: Test timeout computed to be: 1500 -534: RETVAL: 0 -534: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm) -534: BSplineDeformableTransform (0x55d8e449cf00) -534: RTTI typeinfo: itk::BSplineDeformableTransform -534: Reference Count: 3 -534: Modified Time: 1488 -534: Debug: Off -534: Object Name: -534: Observers: -534: none -534: CoefficientImage: [ 0x55d8e44982d0, 0x55d8e44992f0, 0x55d8e4497550 ] -534: ValidRegion: ImageRegion (0x55d8e449d050) -534: Dimension: 3 -534: Index: [1, 1, 1] -534: Size: [3, 3, 3] -534: -534: BulkTransform: 0x55d8e427a9b0 -534: WeightsFunction: 0x55d8e42f3630 -534: BulkTransformType: IdentityTransform -534: GridOrigin: [-53.2895, -53.2895, -53.2895] -534: GridSpacing: [28.9474, 28.9474, 28.9474] -534: GridDirection: 1 0 0 -534: 0 1 0 -534: 0 0 1 -534: -534: GridRegion: ImageRegion (0x55d8e44984d8) -534: Dimension: 3 -534: Index: [0, 0, 0] -534: Size: [5, 5, 5] -534: -534: Setting PIH from M_IMG -534: PIH is: -534: Origin = -25.0000 -25.0000 -25.0000 -534: Size = 38 38 38 -534: Spacing = 1.3158 1.3158 1.3158 -534: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -534: Rt_study_warp: Warping m_img -534: plm_warp_itk: xform_to_itk_vf -534: plm_warp_itk: convert_to_itk -534: plm_warp_itk: warping... -534: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd) -534: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd -534: Rt_study_warp: warp and save ss. -534: Finished! -534: -534: STDERR: -534: Not an error -175/578 Test #534: plm-xf-convert-d-warp-2 ............... Passed 1.15 sec +61: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +61: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;0 300 -300 300 -300 300 +61: EXPECTED_ERRNO is +65: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +65: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;150 150 150 +65: EXPECTED_ERRNO is +39: RETVAL: 0 +39: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha +39: +39: STDERR: +39: Not an error +174/578 Test #39: rect-10 ............................... Passed 0.47 sec test 77 Start 77: vf-zero-stats 77: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-zero-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 77: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 77: Test timeout computed to be: 1500 -65: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -65: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;150 150 150 -65: EXPECTED_ERRNO is 77: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 77: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha 77: EXPECTED_ERRNO is -51: RETVAL: 0 -51: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha -51: -51: STDERR: -51: Not an error -176/578 Test #51: rect-19 ............................... Passed 0.52 sec +42: RETVAL: 0 +42: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha +42: +42: STDERR: +42: Not an error +175/578 Test #42: rect-11 ............................... Passed 0.52 sec test 79 Start 79: vf-trans-1-stats 79: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 79: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 79: Test timeout computed to be: 1500 -54: RETVAL: 0 -54: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha -54: -54: STDERR: -54: Not an error -177/578 Test #54: rectarr-02 ............................ Passed 0.48 sec +56: RETVAL: 0 +56: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha +56: +56: STDERR: +56: Not an error +546: RETVAL: 0 +546: STDOUT: Paste and smooth loop +546: Iteration 0/20 +546: Convolving +546: Iteration 1/20 +546: Convolving +546: Iteration 2/20 +546: Convolving +546: Iteration 3/20 +546: Convolving +546: Iteration 4/20 +546: Convolving +546: Iteration 5/20 +546: Convolving +546: Iteration 6/20 +546: Convolving +546: Iteration 7/20 +546: Convolving +546: Iteration 8/20 +546: Convolving +546: Iteration 9/20 +546: Convolving +546: Iteration 10/20 +546: Convolving +546: Iteration 11/20 +546: Convolving +546: Iteration 12/20 +546: Convolving +546: Iteration 13/20 +546: Convolving +546: Iteration 14/20 +546: Convolving +546: Iteration 15/20 +546: Convolving +546: Iteration 16/20 +546: Convolving +546: Iteration 17/20 +546: Convolving +546: Iteration 18/20 +546: Convolving +546: Iteration 19/20 +546: Convolving +546: Done. +546: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha +546: +546: STDERR: +176/578 Test #56: rectarr-m-02 .......................... Passed 0.32 sec test 81 Start 81: vf-trans-2-stats 81: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-2-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 81: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 81: Test timeout computed to be: 1500 +546: Not an error 79: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 79: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha 79: EXPECTED_ERRNO is -81: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -81: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha -81: EXPECTED_ERRNO is -61: RETVAL: 0 -61: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha -61: -61: STDERR: -61: Not an error -53: RETVAL: 0 -53: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha -53: -53: STDERR: -178/578 Test #61: roi-1 ................................. Passed 0.37 sec +177/578 Test #546: xf-invert-vf-zero-1 ................... Passed 0.87 sec test 83 Start 83: vf-radial-1-stats 83: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-radial-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 83: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 83: Test timeout computed to be: 1500 -53: Not an error 55: RETVAL: 0 55: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha 55: 55: STDERR: 55: Not an error -179/578 Test #53: rectarr-01 ............................ Passed 0.63 sec +178/578 Test #55: rectarr-m-01 .......................... Passed 0.46 sec test 85 Start 85: plm-compare-a 85: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 85: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 85: Test timeout computed to be: 1500 -180/578 Test #55: rectarr-m-01 .......................... Passed 0.57 sec +53: RETVAL: 0 +53: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha +53: +53: STDERR: +53: Not an error +81: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +81: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha +81: EXPECTED_ERRNO is +179/578 Test #53: rectarr-01 ............................ Passed 0.52 sec test 87 Start 87: plm-compare-b @@ -11243,86 +11280,87 @@ 87: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 87: PARMS is compare;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 87: EXPECTED_ERRNO is -77: RETVAL: 0 -77: STDOUT: Min: 0.000 0.000 0.000 -77: Mean: 0.000 0.000 0.000 -77: Max: 0.000 0.000 0.000 -77: Mean abs: 0.000 0.000 0.000 -77: Ave len: 0.000 -77: Jacobian: MINJAC 1 MAXJAC 1 -77: Energy: MINDIL 0 MAXDIL 0 -77: MAXSTRAIN 0 TOTSTRAIN 0 -77: Second derivatives: MINSECDER 0 MAXSECDER 0 -77: AVESECDER 0 INTSECDER 0 -77: Max second derivative at: (1 1 1) -77: -77: STDERR: -77: Not an error -181/578 Test #77: vf-zero-stats ......................... Passed 0.47 sec +54: RETVAL: 0 +54: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha +54: +54: STDERR: +54: Not an error +61: RETVAL: 0 +61: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha +61: +61: STDERR: +180/578 Test #54: rectarr-02 ............................ Passed 0.58 sec test 89 Start 89: plm-compare-c 89: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 89: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 89: Test timeout computed to be: 1500 -89: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -89: PARMS is compare;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha -89: EXPECTED_ERRNO is -56: RETVAL: 0 -56: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha -56: -56: STDERR: -56: Not an error -182/578 Test #56: rectarr-m-02 .......................... Passed 0.69 sec +61: Not an error +181/578 Test #61: roi-1 ................................. Passed 0.30 sec test 92 Start 92: plm-diff-a-stats 92: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 92: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 92: Test timeout computed to be: 1500 +89: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +89: PARMS is compare;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha +89: EXPECTED_ERRNO is 65: RETVAL: 0 65: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha 65: 65: STDERR: 65: Not an error -92: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -92: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha -92: EXPECTED_ERRNO is -183/578 Test #65: sphere-4 .............................. Passed 0.65 sec +182/578 Test #65: sphere-4 .............................. Passed 0.33 sec test 95 Start 95: plm-diff-b-stats 95: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 95: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 95: Test timeout computed to be: 1500 +92: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +92: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha +92: EXPECTED_ERRNO is 95: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 95: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha 95: EXPECTED_ERRNO is -81: RETVAL: 0 -81: STDOUT: Min: 0.000 10.000 0.000 -81: Mean: 0.000 10.000 0.000 -81: Max: 0.000 10.000 0.000 -81: Mean abs: 0.000 10.000 0.000 -81: Ave len: 10.000 -81: Jacobian: MINJAC 1 MAXJAC 1 -81: Energy: MINDIL 0 MAXDIL 0 -81: MAXSTRAIN 0 TOTSTRAIN 0 -81: Second derivatives: MINSECDER 0 MAXSECDER 0 -81: AVESECDER 0 INTSECDER 0 -81: Max second derivative at: (1 1 1) -81: -81: STDERR: -81: Not an error -184/578 Test #81: vf-trans-2-stats ...................... Passed 0.62 sec +79: RETVAL: 0 +79: STDOUT: Min: 10.000 0.000 0.000 +79: Mean: 10.000 0.000 0.000 +79: Max: 10.000 0.000 0.000 +79: Mean abs: 10.000 0.000 0.000 +79: Ave len: 10.000 +79: Jacobian: MINJAC 1 MAXJAC 1 +79: Energy: MINDIL 0 MAXDIL 0 +79: MAXSTRAIN 0 TOTSTRAIN 0 +79: Second derivatives: MINSECDER 0 MAXSECDER 0 +79: AVESECDER 0 INTSECDER 0 +79: Max second derivative at: (1 1 1) +79: +79: STDERR: +79: Not an error +183/578 Test #79: vf-trans-1-stats ...................... Passed 0.31 sec test 97 Start 97: demons-a 97: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=demons-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/demons" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=-m;50;-s;3;-f;5 5 5;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 97: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 97: Test timeout computed to be: 1500 -97: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/demons -97: PARMS is -m;50;-s;3;-f;5 5 5;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -97: EXPECTED_ERRNO is +85: RETVAL: 0 +85: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 +85: MAE 85.100204 MSE 18945.890625 +85: DIF 54872 NUM 54872 +85: +85: STDERR: +85: Not an error +184/578 Test #85: plm-compare-a ......................... Passed 0.31 sec +test 100 + Start 100: drr-a-stats + +100: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_0010.pfm" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +100: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +100: Test timeout computed to be: 1500 83: RETVAL: 0 83: STDOUT: Min: -9.993 -9.993 -9.993 83: Mean: 0.000 0.000 0.000 @@ -11338,29 +11376,10 @@ 83: 83: STDERR: 83: Not an error -185/578 Test #83: vf-radial-1-stats ..................... Passed 0.56 sec -test 100 - Start 100: drr-a-stats - -100: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_0010.pfm" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -100: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -100: Test timeout computed to be: 1500 -79: RETVAL: 0 -79: STDOUT: Min: 10.000 0.000 0.000 -79: Mean: 10.000 0.000 0.000 -79: Max: 10.000 0.000 0.000 -79: Mean abs: 10.000 0.000 0.000 -79: Ave len: 10.000 -79: Jacobian: MINJAC 1 MAXJAC 1 -79: Energy: MINDIL 0 MAXDIL 0 -79: MAXSTRAIN 0 TOTSTRAIN 0 -79: Second derivatives: MINSECDER 0 MAXSECDER 0 -79: AVESECDER 0 INTSECDER 0 -79: Max second derivative at: (1 1 1) -79: -79: STDERR: -79: Not an error -186/578 Test #79: vf-trans-1-stats ...................... Passed 0.71 sec +97: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/demons +97: PARMS is -m;50;-s;3;-f;5 5 5;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +97: EXPECTED_ERRNO is +185/578 Test #83: vf-radial-1-stats ..................... Passed 0.34 sec test 103 Start 103: drr-b-stats @@ -11370,26 +11389,75 @@ 100: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 100: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_0010.pfm 100: EXPECTED_ERRNO is -85: RETVAL: 0 -85: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 -85: MAE 85.100204 MSE 18945.890625 -85: DIF 54872 NUM 54872 -85: -85: STDERR: -85: Not an error -187/578 Test #85: plm-compare-a ......................... Passed 0.59 sec +103: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +103: PARMS is stats;drr-b/out_0010.pfm +103: EXPECTED_ERRNO is +81: RETVAL: 0 +81: STDOUT: Min: 0.000 10.000 0.000 +81: Mean: 0.000 10.000 0.000 +81: Max: 0.000 10.000 0.000 +81: Mean abs: 0.000 10.000 0.000 +81: Ave len: 10.000 +81: Jacobian: MINJAC 1 MAXJAC 1 +81: Energy: MINDIL 0 MAXDIL 0 +81: MAXSTRAIN 0 TOTSTRAIN 0 +81: Second derivatives: MINSECDER 0 MAXSECDER 0 +81: AVESECDER 0 INTSECDER 0 +81: Max second derivative at: (1 1 1) +81: +81: STDERR: +81: Not an error +186/578 Test #81: vf-trans-2-stats ...................... Passed 0.42 sec test 106 Start 106: drr-c-stats 106: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;drr-c/out_0010.pfm" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 106: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 106: Test timeout computed to be: 1500 -103: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -103: PARMS is stats;drr-b/out_0010.pfm -103: EXPECTED_ERRNO is +87: RETVAL: 0 +87: STDOUT: Min: 10.000 -10.000 0.000 +87: Mean: 10.000 -10.000 0.000 +87: Max: 10.000 -10.000 0.000 +87: Mean abs: 10.000 10.000 0.000 +87: Ave len: 14.142 +87: +87: STDERR: +87: Not an error +187/578 Test #87: plm-compare-b ......................... Passed 0.38 sec +test 109 + Start 109: fdk-cpu-a-stats + +109: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +109: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +109: Test timeout computed to be: 1500 106: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 106: PARMS is stats;drr-c/out_0010.pfm 106: EXPECTED_ERRNO is +109: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +109: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha +109: EXPECTED_ERRNO is +95: RETVAL: 0 +95: STDOUT: Min: 10.000 -10.000 0.000 +95: Mean: 10.000 -10.000 0.000 +95: Max: 10.000 -10.000 0.000 +95: Mean abs: 10.000 10.000 0.000 +95: Ave len: 14.142 +95: Jacobian: MINJAC 1 MAXJAC 1 +95: Energy: MINDIL 0 MAXDIL 0 +95: MAXSTRAIN 0 TOTSTRAIN 0 +95: Second derivatives: MINSECDER 0 MAXSECDER 0 +95: AVESECDER 0 INTSECDER 0 +95: Max second derivative at: (1 1 1) +95: +95: STDERR: +95: Not an error +188/578 Test #95: plm-diff-b-stats ...................... Passed 0.37 sec +test 112 + Start 112: fdk-cpu-d-stats + +112: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +112: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +112: Test timeout computed to be: 1500 89: RETVAL: 0 89: STDOUT: Mask enabled. 512 / 54872 voxels inside mask 89: Min: 10.000 -10.000 0.000 @@ -11405,61 +11473,47 @@ 89: 89: STDERR: 89: Not an error -188/578 Test #89: plm-compare-c ......................... Passed 0.43 sec -test 109 - Start 109: fdk-cpu-a-stats - -109: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -109: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -109: Test timeout computed to be: 1500 -87: RETVAL: 0 -87: STDOUT: Min: 10.000 -10.000 0.000 -87: Mean: 10.000 -10.000 0.000 -87: Max: 10.000 -10.000 0.000 -87: Mean abs: 10.000 10.000 0.000 -87: Ave len: 14.142 -87: -87: STDERR: -87: Not an error -189/578 Test #87: plm-compare-b ......................... Passed 0.67 sec -test 112 - Start 112: fdk-cpu-d-stats - -112: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -112: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -112: Test timeout computed to be: 1500 -109: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -109: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha -109: EXPECTED_ERRNO is 112: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 112: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha 112: EXPECTED_ERRNO is -92: RETVAL: 0 -92: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872 -92: -92: STDERR: -92: Not an error -190/578 Test #92: plm-diff-a-stats ...................... Passed 0.49 sec +103: RETVAL: 0 +103: STDOUT: Image center: 63.5 63.5 +103: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 +103: MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384 +103: +103: STDERR: +103: Not an error +189/578 Test #89: plm-compare-c ......................... Passed 0.46 sec test 115 Start 115: landmark-warp-a-stats-1 115: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 115: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 115: Test timeout computed to be: 1500 -106: RETVAL: 0 -106: STDOUT: Image center: 63.5 63.5 -106: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 -106: MIN 0.000000 AVE 0.000125 MAX 0.050494 NUM 16384 -106: -106: STDERR: -106: Not an error -191/578 Test #106: drr-c-stats ........................... Passed 0.24 sec +190/578 Test #103: drr-b-stats ........................... Passed 0.24 sec test 117 Start 117: landmark-warp-a-stats-2 117: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 117: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 117: Test timeout computed to be: 1500 +77: RETVAL: 0 +77: STDOUT: Min: 0.000 0.000 0.000 +77: Mean: 0.000 0.000 0.000 +77: Max: 0.000 0.000 0.000 +77: Mean abs: 0.000 0.000 0.000 +77: Ave len: 0.000 +77: Jacobian: MINJAC 1 MAXJAC 1 +77: Energy: MINDIL 0 MAXDIL 0 +77: MAXSTRAIN 0 TOTSTRAIN 0 +77: Second derivatives: MINSECDER 0 MAXSECDER 0 +77: AVESECDER 0 INTSECDER 0 +77: Max second derivative at: (1 1 1) +77: +77: STDERR: +115: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +115: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha +115: EXPECTED_ERRNO is 100: RETVAL: 0 100: STDOUT: Image center: 63.5 63.5 100: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 @@ -11467,70 +11521,53 @@ 100: 100: STDERR: 100: Not an error -115: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -115: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha -115: EXPECTED_ERRNO is -192/578 Test #100: drr-a-stats ........................... Passed 0.30 sec +191/578 Test #100: drr-a-stats ........................... Passed 0.29 sec test 120 Start 120: landmark-warp-b-stats-1 120: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 120: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 120: Test timeout computed to be: 1500 -117: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -117: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha -117: EXPECTED_ERRNO is -120: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -120: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha -120: EXPECTED_ERRNO is -95: RETVAL: 0 -95: STDOUT: Min: 10.000 -10.000 0.000 -95: Mean: 10.000 -10.000 0.000 -95: Max: 10.000 -10.000 0.000 -95: Mean abs: 10.000 10.000 0.000 -95: Ave len: 14.142 -95: Jacobian: MINJAC 1 MAXJAC 1 -95: Energy: MINDIL 0 MAXDIL 0 -95: MAXSTRAIN 0 TOTSTRAIN 0 -95: Second derivatives: MINSECDER 0 MAXSECDER 0 -95: AVESECDER 0 INTSECDER 0 -95: Max second derivative at: (1 1 1) -95: -95: STDERR: -95: Not an error -193/578 Test #95: plm-diff-b-stats ...................... Passed 0.59 sec +77: Not an error +192/578 Test #77: vf-zero-stats ......................... Passed 0.72 sec test 122 Start 122: landmark-warp-b-stats-2 122: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 122: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 122: Test timeout computed to be: 1500 -122: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -122: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha -122: EXPECTED_ERRNO is -103: RETVAL: 0 -103: STDOUT: Image center: 63.5 63.5 -103: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 -103: MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384 -103: -103: STDERR: -103: Not an error -194/578 Test #103: drr-b-stats ........................... Passed 0.46 sec +117: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +117: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha +117: EXPECTED_ERRNO is +120: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +120: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha +120: EXPECTED_ERRNO is +92: RETVAL: 0 +92: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872 +92: +92: STDERR: +92: Not an error +193/578 Test #92: plm-diff-a-stats ...................... Passed 0.54 sec test 125 Start 125: landmark-warp-c-stats-1 125: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 125: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 125: Test timeout computed to be: 1500 +122: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +122: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha +122: EXPECTED_ERRNO is 125: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 125: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha 125: EXPECTED_ERRNO is -115: RETVAL: 0 -115: STDOUT: MIN -1000.000000 AVE -991.799744 MAX 0.000000 NONZERO 54494 NUMVOX 54872 -115: -115: STDERR: -115: Not an error -195/578 Test #115: landmark-warp-a-stats-1 ............... Passed 0.39 sec +106: RETVAL: 0 +106: STDOUT: Image center: 63.5 63.5 +106: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 +106: MIN 0.000000 AVE 0.000125 MAX 0.050494 NUM 16384 +106: +106: STDERR: +106: Not an error +194/578 Test #106: drr-c-stats ........................... Passed 0.41 sec test 127 Start 127: landmark-warp-c-stats-2 @@ -11540,88 +11577,157 @@ 127: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 127: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha 127: EXPECTED_ERRNO is -109: RETVAL: 0 -109: STDOUT: MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600 -109: -109: STDERR: -109: Not an error -196/578 Test #109: fdk-cpu-a-stats ....................... Passed 0.60 sec +115: RETVAL: 0 +115: STDOUT: MIN -1000.000000 AVE -991.799744 MAX 0.000000 NONZERO 54494 NUMVOX 54872 +115: +115: STDERR: +115: Not an error +195/578 Test #115: landmark-warp-a-stats-1 ............... Passed 0.31 sec test 131 Start 131: plm-add-a-stats 131: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 131: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 131: Test timeout computed to be: 1500 -131: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -131: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd -131: EXPECTED_ERRNO is -117: RETVAL: 0 -117: STDOUT: Min: -62.465 -4.112 -0.000 -117: Mean: -22.960 0.011 0.000 -117: Max: 16.278 4.199 0.000 -117: Mean abs: 25.589 1.505 0.000 -117: Ave len: 25.766 -117: Jacobian: MINJAC 1.12686 MAXJAC 1.15895 -117: Energy: MINDIL 0.128 MAXDIL 0.157995 -117: MAXSTRAIN 0.171 TOTSTRAIN 7133.92 -117: Second derivatives: MINSECDER 2.92e-10 MAXSECDER 0.000557 -117: AVESECDER 7.93e-07 INTSECDER 99.2 -117: Max second derivative at: (24 15 22) -117: -117: STDERR: -117: Not an error -197/578 Test #117: landmark-warp-a-stats-2 ............... Passed 0.55 sec +109: RETVAL: 0 +109: STDOUT: MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600 +109: +109: STDERR: +109: Not an error +196/578 Test #109: fdk-cpu-a-stats ....................... Passed 0.50 sec test 134 Start 134: plm-add-b-stats 134: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 134: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 134: Test timeout computed to be: 1500 -134: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -134: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd -134: EXPECTED_ERRNO is -112: RETVAL: 0 -112: STDOUT: MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600 -112: -112: STDERR: -112: Not an error -198/578 Test #112: fdk-cpu-d-stats ....................... Passed 0.76 sec +131: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +131: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd +131: EXPECTED_ERRNO is +120: RETVAL: 0 +120: STDOUT: MIN -1000.000122 AVE -992.005493 MAX 0.000000 NONZERO 54512 NUMVOX 54872 +120: +120: STDERR: +120: Not an error +197/578 Test #120: landmark-warp-b-stats-1 ............... Passed 0.34 sec test 137 Start 137: plm-add-vf-a-stats 137: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 137: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 137: Test timeout computed to be: 1500 +134: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +134: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd +134: EXPECTED_ERRNO is 137: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 137: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd 137: EXPECTED_ERRNO is -127: RETVAL: 0 -127: STDOUT: Min: -27.760 -0.518 -0.000 -127: Mean: -1.562 0.019 0.000 -127: Max: -0.000 1.063 0.000 -127: Mean abs: 1.562 0.037 0.000 -127: Ave len: 1.563 -127: Jacobian: MINJAC 0.698803 MAXJAC 1.18578 -127: Energy: MINDIL -0.302 MAXDIL 0.186636 -127: MAXSTRAIN 0.205 TOTSTRAIN 143.999 -127: Second derivatives: MINSECDER 2.31e-17 MAXSECDER 0.0141 -127: AVESECDER 0.000315 INTSECDER 3.94e+04 -127: Max second derivative at: (17 22 16) -127: -127: STDERR: -127: Not an error -199/578 Test #127: landmark-warp-c-stats-2 ............... Passed 0.36 sec +125: RETVAL: 0 +125: STDOUT: MIN -1000.000122 AVE -991.665894 MAX 0.000000 NONZERO 54484 NUMVOX 54872 +125: +125: STDERR: +125: Not an error +198/578 Test #125: landmark-warp-c-stats-1 ............... Passed 0.41 sec test 140 Start 140: plm-add-vf-b-stats 140: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 140: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 140: Test timeout computed to be: 1500 -120: RETVAL: 0 -120: STDOUT: MIN -1000.000122 AVE -992.005493 MAX 0.000000 NONZERO 54512 NUMVOX 54872 -120: -120: STDERR: -120: Not an error +556: RETVAL: 0 +556: STDOUT: +556: [PLAN] +556: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha +556: target : +556: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha +556: debug : 0 +556: dose norm : 70 +556: +556: [SETTINGS] +556: flavor: a ** +556: homo_approx: n ** +556: ray_step: 1 ** +556: aperture_out: ** +556: proj_dose_out: ** +556: proj_img_out: ** +556: range_comp_out: ** +556: sigma_out: ** +556: wed_out: ** +556: beam_weight: 1 ** +556: +556: [GEOMETRY & APERTURE] +556: source: 0 -2000 0 ** +556: isocenter: 0 0 0 ** +556: vup: 0 0 1 ** +556: offset: 1500 ** +556: ap_center in pixels: 10 10 ** +556: i_res: 21 21 ** +556: spacing: 1 1 ** +556: source_size: 0 ** +556: ap_file_in: ** +556: rc_file_in: ** +556: smearing: 0 ** +556: +556: [PEAK] +556: E0: P0 +556: spread: P0 +556: weight: P0 +556: +556: Start dose calculation Beam 1 +556: Plan_calc::compute_beam_dose(beam) entry -- +556: Setting RVRTS = 1 +556: FPD = 347.500001, BPD = 647.528776 +556: 21 21 301 +556: Setting RVRTS = 1 +556: FPD = 347.500001, BPD = 647.528776 +556: 21 21 301 +556: Priority 4. Prescription depths detected. Any target depth will not be considered. +556: prescription min/max: 70 mm, 90 mm. +556: +556: 16 Mono-energetic BP used: +556: 111 110 109 108 107 106 105 104 103 102 101 100 99 98 97 96 +556: Adding peak to sobp (111.000000, 1.000000, 0.892866) [0.010000, 111.000000] +556: Adding peak to sobp (110.000000, 1.000000, 0.199040) [0.010000, 111.000000] +556: Adding peak to sobp (109.000000, 1.000000, 0.226753) [0.010000, 111.000000] +556: Adding peak to sobp (108.000000, 1.000000, 0.173442) [0.010000, 111.000000] +556: Adding peak to sobp (107.000000, 1.000000, 0.151005) [0.010000, 111.000000] +556: Adding peak to sobp (106.000000, 1.000000, 0.133983) [0.010000, 111.000000] +556: Adding peak to sobp (105.000000, 1.000000, 0.120333) [0.010000, 111.000000] +556: Adding peak to sobp (104.000000, 1.000000, 0.111431) [0.010000, 111.000000] +556: Adding peak to sobp (103.000000, 1.000000, 0.102203) [0.010000, 111.000000] +556: Adding peak to sobp (102.000000, 1.000000, 0.095667) [0.010000, 111.000000] +556: Adding peak to sobp (101.000000, 1.000000, 0.089522) [0.010000, 111.000000] +556: Adding peak to sobp (100.000000, 1.000000, 0.084473) [0.010000, 111.000000] +556: Adding peak to sobp (99.000000, 1.000000, 0.079452) [0.010000, 111.000000] +556: Adding peak to sobp (98.000000, 1.000000, 0.078322) [0.010000, 111.000000] +556: Adding peak to sobp (97.000000, 1.000000, 0.063062) [0.010000, 111.000000] +556: Adding peak to sobp (96.000000, 1.000000, 0.099306) [0.010000, 111.000000] +556: **** (1) +556: Raw dose at the maximum (0, -30, 0) : 0.999508 A.U. +556: Dose normalized at the maximum to 1 x 70 Gy. +556: Primary PB num. x, y: 21, 21, primary PB res. x, y: 1 PB/mm, 1 PB/mm +556: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha +556: Sigma: 0.000000 seconds +556: Calc: 1.428497 seconds +556: IO: 0.057307 seconds +556: Reformat: 0.000000 seconds +556: Misc: 0.010593 seconds +556: done. +556: +556: Total execution time : 1.564087 seconds. +556: +556: STDERR: +556: Not an error +140: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +140: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd +140: EXPECTED_ERRNO is +199/578 Test #556: proton-dose-1 ......................... Passed 1.91 sec +test 143 + Start 143: plm-adjust-a-stats + +143: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +143: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +143: Test timeout computed to be: 1500 122: RETVAL: 0 122: STDOUT: Min: -30.672 -0.800 -0.000 122: Mean: -1.500 0.018 0.000 @@ -11637,99 +11743,108 @@ 122: 122: STDERR: 122: Not an error -200/578 Test #120: landmark-warp-b-stats-1 ............... Passed 0.72 sec -test 143 - Start 143: plm-adjust-a-stats - -143: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -143: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -143: Test timeout computed to be: 1500 -201/578 Test #122: landmark-warp-b-stats-2 ............... Passed 0.62 sec +200/578 Test #122: landmark-warp-b-stats-2 ............... Passed 0.50 sec test 146 Start 146: plm-adjust-b-stats 146: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 146: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 146: Test timeout computed to be: 1500 -125: RETVAL: 0 -125: STDOUT: MIN -1000.000122 AVE -991.665894 MAX 0.000000 NONZERO 54484 NUMVOX 54872 -125: -125: STDERR: -125: Not an error -202/578 Test #125: landmark-warp-c-stats-1 ............... Passed 0.59 sec +112: RETVAL: 0 +112: STDOUT: MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600 +112: +112: STDERR: +112: Not an error +201/578 Test #112: fdk-cpu-d-stats ....................... Passed 0.63 sec test 149 Start 149: plm-adjust-c-stats 149: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 149: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 149: Test timeout computed to be: 1500 -140: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -140: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd -140: EXPECTED_ERRNO is 143: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 143: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd 143: EXPECTED_ERRNO is 146: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 146: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd 146: EXPECTED_ERRNO is +117: RETVAL: 0 +117: STDOUT: Min: -62.465 -4.112 -0.000 +117: Mean: -22.960 0.011 0.000 +117: Max: 16.278 4.199 0.000 +117: Mean abs: 25.589 1.505 0.000 +117: Ave len: 25.766 +117: Jacobian: MINJAC 1.12686 MAXJAC 1.15895 +117: Energy: MINDIL 0.128 MAXDIL 0.157995 +117: MAXSTRAIN 0.171 TOTSTRAIN 7133.92 +117: Second derivatives: MINSECDER 2.92e-10 MAXSECDER 0.000557 +117: AVESECDER 7.93e-07 INTSECDER 99.2 +117: Max second derivative at: (24 15 22) +117: +117: STDERR: +117: Not an error +202/578 Test #117: landmark-warp-a-stats-2 ............... Passed 0.62 sec +test 152 + Start 152: plm-adjust-d-stats + +152: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +152: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +152: Test timeout computed to be: 1500 149: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 149: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd 149: EXPECTED_ERRNO is +152: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +152: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd +152: EXPECTED_ERRNO is +127: RETVAL: 0 +127: STDOUT: Min: -27.760 -0.518 -0.000 +127: Mean: -1.562 0.019 0.000 +127: Max: -0.000 1.063 0.000 +127: Mean abs: 1.562 0.037 0.000 +127: Ave len: 1.563 +127: Jacobian: MINJAC 0.698803 MAXJAC 1.18578 +127: Energy: MINDIL -0.302 MAXDIL 0.186636 +127: MAXSTRAIN 0.205 TOTSTRAIN 143.999 +127: Second derivatives: MINSECDER 2.31e-17 MAXSECDER 0.0141 +127: AVESECDER 0.000315 INTSECDER 3.94e+04 +127: Max second derivative at: (17 22 16) +127: +127: STDERR: 131: RETVAL: 0 131: STDOUT: MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872 131: 131: STDERR: 131: Not an error -134: RETVAL: 0 -134: STDOUT: MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872 -134: -134: STDERR: -134: Not an error -203/578 Test #134: plm-add-b-stats ....................... Passed 0.47 sec -test 152 - Start 152: plm-adjust-d-stats - -152: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -152: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -152: Test timeout computed to be: 1500 -204/578 Test #131: plm-add-a-stats ....................... Passed 0.61 sec +203/578 Test #131: plm-add-a-stats ....................... Passed 0.37 sec test 155 Start 155: plm-adjust-e-stats 155: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 155: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 155: Test timeout computed to be: 1500 -152: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -152: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd -152: EXPECTED_ERRNO is -155: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -155: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd -155: EXPECTED_ERRNO is -140: RETVAL: 0 -140: STDOUT: Min: 5.000 5.000 0.000 -140: Mean: 5.000 5.000 0.000 -140: Max: 5.000 5.000 0.000 -140: Mean abs: 5.000 5.000 0.000 -140: Ave len: 7.071 -140: Jacobian: MINJAC 1 MAXJAC 1 -140: Energy: MINDIL 0 MAXDIL 0 -140: MAXSTRAIN 0 TOTSTRAIN 0 -140: Second derivatives: MINSECDER 0 MAXSECDER 0 -140: AVESECDER 0 INTSECDER 0 -140: Max second derivative at: (1 1 1) -140: -140: STDERR: -140: Not an error -205/578 Test #140: plm-add-vf-b-stats .................... Passed 0.41 sec +127: Not an error +204/578 Test #127: landmark-warp-c-stats-2 ............... Passed 0.45 sec test 158 Start 158: plm-adjust-f-stats 158: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-f-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 158: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 158: Test timeout computed to be: 1500 -158: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -158: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd -158: EXPECTED_ERRNO is +134: RETVAL: 0 +134: STDOUT: MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872 +134: +134: STDERR: +134: Not an error +205/578 Test #134: plm-add-b-stats ....................... Passed 0.37 sec +test 161 + Start 161: plm-adjust-g-stats + +161: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-g-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +161: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +161: Test timeout computed to be: 1500 +155: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +155: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd +155: EXPECTED_ERRNO is 137: RETVAL: 0 137: STDOUT: Min: 20.000 0.000 0.000 137: Mean: 20.000 0.000 0.000 @@ -11745,19 +11860,10 @@ 137: 137: STDERR: 137: Not an error -206/578 Test #137: plm-add-vf-a-stats .................... Passed 0.61 sec -test 161 - Start 161: plm-adjust-g-stats - -161: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-g-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -161: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -161: Test timeout computed to be: 1500 -143: RETVAL: 0 -143: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 -143: -143: STDERR: -143: Not an error -207/578 Test #143: plm-adjust-a-stats .................... Passed 0.53 sec +158: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +158: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd +158: EXPECTED_ERRNO is +206/578 Test #137: plm-add-vf-a-stats .................... Passed 0.35 sec test 164 Start 164: plm-adjust-h-stats @@ -11767,148 +11873,58 @@ 161: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 161: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd 161: EXPECTED_ERRNO is -149: RETVAL: 0 -149: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 -149: -149: STDERR: -149: Not an error 164: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 164: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd 164: EXPECTED_ERRNO is -208/578 Test #149: plm-adjust-c-stats .................... Passed 0.55 sec +140: RETVAL: 0 +140: STDOUT: Min: 5.000 5.000 0.000 +140: Mean: 5.000 5.000 0.000 +140: Max: 5.000 5.000 0.000 +140: Mean abs: 5.000 5.000 0.000 +140: Ave len: 7.071 +140: Jacobian: MINJAC 1 MAXJAC 1 +140: Energy: MINDIL 0 MAXDIL 0 +140: MAXSTRAIN 0 TOTSTRAIN 0 +140: Second derivatives: MINSECDER 0 MAXSECDER 0 +140: AVESECDER 0 INTSECDER 0 +140: Max second derivative at: (1 1 1) +140: +140: STDERR: +140: Not an error +207/578 Test #140: plm-add-vf-b-stats .................... Passed 0.30 sec test 167 Start 167: plm-adjust-i-stats 167: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-i-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 167: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 167: Test timeout computed to be: 1500 -146: RETVAL: 0 -146: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 -146: -146: STDERR: -146: Not an error -209/578 Test #146: plm-adjust-b-stats .................... Passed 0.60 sec -test 170 - Start 170: plm-adjust-j-stats - -170: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-j-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -170: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -170: Test timeout computed to be: 1500 167: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 167: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd 167: EXPECTED_ERRNO is -170: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -170: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd -170: EXPECTED_ERRNO is -556: RETVAL: 0 -556: STDOUT: -556: [PLAN] -556: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha -556: target : -556: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha -556: debug : 0 -556: dose norm : 70 -556: -556: [SETTINGS] -556: flavor: a ** -556: homo_approx: n ** -556: ray_step: 1 ** -556: aperture_out: ** -556: proj_dose_out: ** -556: proj_img_out: ** -556: range_comp_out: ** -556: sigma_out: ** -556: wed_out: ** -556: beam_weight: 1 ** -556: -556: [GEOMETRY & APERTURE] -556: source: 0 -2000 0 ** -556: isocenter: 0 0 0 ** -556: vup: 0 0 1 ** -556: offset: 1500 ** -556: ap_center in pixels: 10 10 ** -556: i_res: 21 21 ** -556: spacing: 1 1 ** -556: source_size: 0 ** -556: ap_file_in: ** -556: rc_file_in: ** -556: smearing: 0 ** -556: -556: [PEAK] -556: E0: P0 -556: spread: P0 -556: weight: P0 -556: -556: Start dose calculation Beam 1 -556: Plan_calc::compute_beam_dose(beam) entry -- -556: Setting RVRTS = 1 -556: FPD = 347.500001, BPD = 647.528776 -556: 21 21 301 -556: Setting RVRTS = 1 -556: FPD = 347.500001, BPD = 647.528776 -556: 21 21 301 -556: Priority 4. Prescription depths detected. Any target depth will not be considered. -556: prescription min/max: 70 mm, 90 mm. -556: -556: 16 Mono-energetic BP used: -556: 111 110 109 108 107 106 105 104 103 102 101 100 99 98 97 96 -556: Adding peak to sobp (111.000000, 1.000000, 0.892866) [0.010000, 111.000000] -556: Adding peak to sobp (110.000000, 1.000000, 0.199040) [0.010000, 111.000000] -556: Adding peak to sobp (109.000000, 1.000000, 0.226753) [0.010000, 111.000000] -556: Adding peak to sobp (108.000000, 1.000000, 0.173442) [0.010000, 111.000000] -556: Adding peak to sobp (107.000000, 1.000000, 0.151005) [0.010000, 111.000000] -556: Adding peak to sobp (106.000000, 1.000000, 0.133983) [0.010000, 111.000000] -556: Adding peak to sobp (105.000000, 1.000000, 0.120333) [0.010000, 111.000000] -556: Adding peak to sobp (104.000000, 1.000000, 0.111431) [0.010000, 111.000000] -556: Adding peak to sobp (103.000000, 1.000000, 0.102203) [0.010000, 111.000000] -556: Adding peak to sobp (102.000000, 1.000000, 0.095667) [0.010000, 111.000000] -556: Adding peak to sobp (101.000000, 1.000000, 0.089522) [0.010000, 111.000000] -556: Adding peak to sobp (100.000000, 1.000000, 0.084473) [0.010000, 111.000000] -556: Adding peak to sobp (99.000000, 1.000000, 0.079452) [0.010000, 111.000000] -556: Adding peak to sobp (98.000000, 1.000000, 0.078322) [0.010000, 111.000000] -556: Adding peak to sobp (97.000000, 1.000000, 0.063062) [0.010000, 111.000000] -556: Adding peak to sobp (96.000000, 1.000000, 0.099306) [0.010000, 111.000000] -556: **** (1) -556: Raw dose at the maximum (0, -30, 0) : 0.999508 A.U. -556: Dose normalized at the maximum to 1 x 70 Gy. -556: Primary PB num. x, y: 21, 21, primary PB res. x, y: 1 PB/mm, 1 PB/mm -556: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha -556: Sigma: 0.000000 seconds -556: Calc: 2.733370 seconds -556: IO: 0.131168 seconds -556: Reformat: 0.000000 seconds -556: Misc: 0.010425 seconds -556: done. -556: -556: Total execution time : 2.951236 seconds. -556: -556: STDERR: -556: Not an error -210/578 Test #556: proton-dose-1 ......................... Passed 3.40 sec +143: RETVAL: 0 +143: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 +143: +143: STDERR: +143: Not an error +152: RETVAL: 0 +152: STDOUT: MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872 +152: +152: STDERR: +152: Not an error +208/578 Test #143: plm-adjust-a-stats .................... Passed 0.38 sec +test 170 + Start 170: plm-adjust-j-stats + +170: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-j-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +170: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +170: Test timeout computed to be: 1500 +209/578 Test #152: plm-adjust-d-stats .................... Passed 0.30 sec test 173 Start 173: plm-boundary-a-stats 173: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 173: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 173: Test timeout computed to be: 1500 -155: RETVAL: 0 -155: STDOUT: MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872 -155: -155: STDERR: -155: Not an error -211/578 Test #155: plm-adjust-e-stats .................... Passed 0.43 sec -test 176 - Start 176: plm-boundary-b-stats - -176: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -176: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -176: Test timeout computed to be: 1500 -173: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -173: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd -173: EXPECTED_ERRNO is -176: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -176: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd -176: EXPECTED_ERRNO is 97: RETVAL: 0 97: STDOUT: Fixed = /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 97: Moving = /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -11922,57 +11938,57 @@ 97: kerx: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 97: kery: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 97: kerz: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 -97: MSE [ 0] 18945.6 (1.000) [ 0.044 secs] -97: MSE [ 1] 18945.6 (1.000) [ 0.043 secs] -97: MSE [ 2] 18980.9 (0.995) [ 0.039 secs] -97: MSE [ 3] 18885.4 (0.970) [ 0.044 secs] -97: MSE [ 4] 18084.9 (0.966) [ 0.044 secs] -97: MSE [ 5] 17034.7 (0.966) [ 0.040 secs] -97: MSE [ 6] 15346.9 (0.946) [ 0.040 secs] -97: MSE [ 7] 14427.2 (0.940) [ 0.039 secs] -97: MSE [ 8] 13561.7 (0.935) [ 0.040 secs] -97: MSE [ 9] 12732.2 (0.928) [ 0.039 secs] -97: MSE [ 10] 12276.6 (0.923) [ 0.040 secs] -97: MSE [ 11] 11827.4 (0.920) [ 0.036 secs] -97: MSE [ 12] 11399.6 (0.920) [ 0.039 secs] -97: MSE [ 13] 11078.4 (0.919) [ 0.040 secs] -97: MSE [ 14] 10787.4 (0.918) [ 0.040 secs] -97: MSE [ 15] 10317.6 (0.915) [ 0.040 secs] -97: MSE [ 16] 9735.2 (0.913) [ 0.028 secs] -97: MSE [ 17] 9362.8 (0.911) [ 0.022 secs] -97: MSE [ 18] 8947.5 (0.909) [ 0.021 secs] -97: MSE [ 19] 8534.4 (0.899) [ 0.022 secs] -97: MSE [ 20] 7953.5 (0.895) [ 0.021 secs] -97: MSE [ 21] 7656.6 (0.893) [ 0.020 secs] -97: MSE [ 22] 7364.0 (0.892) [ 0.021 secs] -97: MSE [ 23] 7174.2 (0.892) [ 0.021 secs] -97: MSE [ 24] 6956.3 (0.891) [ 0.021 secs] -97: MSE [ 25] 6512.1 (0.890) [ 0.021 secs] -97: MSE [ 26] 6079.0 (0.890) [ 0.021 secs] +97: MSE [ 0] 18945.6 (1.000) [ 0.018 secs] +97: MSE [ 1] 18945.6 (1.000) [ 0.015 secs] +97: MSE [ 2] 18980.9 (0.995) [ 0.015 secs] +97: MSE [ 3] 18885.4 (0.970) [ 0.016 secs] +97: MSE [ 4] 18084.9 (0.966) [ 0.016 secs] +97: MSE [ 5] 17034.7 (0.966) [ 0.016 secs] +97: MSE [ 6] 15346.9 (0.946) [ 0.016 secs] +97: MSE [ 7] 14427.2 (0.940) [ 0.018 secs] +97: MSE [ 8] 13561.7 (0.935) [ 0.020 secs] +97: MSE [ 9] 12732.2 (0.928) [ 0.018 secs] +97: MSE [ 10] 12276.6 (0.923) [ 0.016 secs] +97: MSE [ 11] 11827.4 (0.920) [ 0.016 secs] +97: MSE [ 12] 11399.6 (0.920) [ 0.025 secs] +97: MSE [ 13] 11078.4 (0.919) [ 0.016 secs] +97: MSE [ 14] 10787.4 (0.918) [ 0.016 secs] +97: MSE [ 15] 10317.6 (0.915) [ 0.016 secs] +97: MSE [ 16] 9735.2 (0.913) [ 0.016 secs] +97: MSE [ 17] 9362.8 (0.911) [ 0.021 secs] +97: MSE [ 18] 8947.5 (0.909) [ 0.019 secs] +97: MSE [ 19] 8534.4 (0.899) [ 0.017 secs] +97: MSE [ 20] 7953.5 (0.895) [ 0.018 secs] +97: MSE [ 21] 7656.6 (0.893) [ 0.023 secs] +97: MSE [ 22] 7364.0 (0.892) [ 0.017 secs] +97: MSE [ 23] 7174.2 (0.892) [ 0.026 secs] +97: MSE [ 24] 6956.3 (0.891) [ 0.016 secs] +97: MSE [ 25] 6512.1 (0.890) [ 0.016 secs] +97: MSE [ 26] 6079.0 (0.890) [ 0.015 secs] 97: MSE [ 27] 5716.1 (0.889) [ 0.021 secs] 97: MSE [ 28] 5454.8 (0.889) [ 0.021 secs] -97: MSE [ 29] 5201.5 (0.889) [ 0.021 secs] -97: MSE [ 30] 5013.3 (0.888) [ 0.020 secs] -97: MSE [ 31] 4840.3 (0.888) [ 0.022 secs] -97: MSE [ 32] 4652.0 (0.887) [ 0.022 secs] -97: MSE [ 33] 4400.6 (0.886) [ 0.021 secs] -97: MSE [ 34] 4085.1 (0.883) [ 0.021 secs] -97: MSE [ 35] 3778.0 (0.882) [ 0.021 secs] -97: MSE [ 36] 3521.6 (0.882) [ 0.021 secs] -97: MSE [ 37] 3308.2 (0.882) [ 0.021 secs] -97: MSE [ 38] 3126.2 (0.881) [ 0.021 secs] -97: MSE [ 39] 2988.9 (0.881) [ 0.023 secs] -97: MSE [ 40] 2836.4 (0.880) [ 0.021 secs] -97: MSE [ 41] 2736.6 (0.881) [ 0.021 secs] -97: MSE [ 42] 2623.3 (0.880) [ 0.023 secs] -97: MSE [ 43] 2426.1 (0.880) [ 0.022 secs] -97: MSE [ 44] 2271.4 (0.879) [ 0.020 secs] -97: MSE [ 45] 2112.0 (0.880) [ 0.023 secs] -97: MSE [ 46] 1926.2 (0.879) [ 0.022 secs] -97: MSE [ 47] 1775.3 (0.880) [ 0.020 secs] -97: MSE [ 48] 1621.0 (0.878) [ 0.024 secs] -97: MSE [ 49] 1504.3 (0.878) [ 0.029 secs] -97: Time for 50 iterations = 1.389740 (0.027795 sec / it) +97: MSE [ 29] 5201.5 (0.889) [ 0.016 secs] +97: MSE [ 30] 5013.3 (0.888) [ 0.017 secs] +97: MSE [ 31] 4840.3 (0.888) [ 0.016 secs] +97: MSE [ 32] 4652.0 (0.887) [ 0.020 secs] +97: MSE [ 33] 4400.6 (0.886) [ 0.020 secs] +97: MSE [ 34] 4085.1 (0.883) [ 0.019 secs] +97: MSE [ 35] 3778.0 (0.882) [ 0.016 secs] +97: MSE [ 36] 3521.6 (0.882) [ 0.019 secs] +97: MSE [ 37] 3308.2 (0.882) [ 0.019 secs] +97: MSE [ 38] 3126.2 (0.881) [ 0.020 secs] +97: MSE [ 39] 2988.9 (0.881) [ 0.019 secs] +97: MSE [ 40] 2836.4 (0.880) [ 0.017 secs] +97: MSE [ 41] 2736.6 (0.881) [ 0.016 secs] +97: MSE [ 42] 2623.3 (0.880) [ 0.017 secs] +97: MSE [ 43] 2426.1 (0.880) [ 0.020 secs] +97: MSE [ 44] 2271.4 (0.879) [ 0.017 secs] +97: MSE [ 45] 2112.0 (0.880) [ 0.017 secs] +97: MSE [ 46] 1926.2 (0.879) [ 0.016 secs] +97: MSE [ 47] 1775.3 (0.880) [ 0.016 secs] +97: MSE [ 48] 1621.0 (0.878) [ 0.016 secs] +97: MSE [ 49] 1504.3 (0.878) [ 0.017 secs] +97: Time for 50 iterations = 0.894548 (0.017891 sec / it) 97: Min: 1.248 -5.701 -5.701 97: Mean: 3.443 0.016 0.016 97: Max: 7.379 5.617 5.617 @@ -11989,118 +12005,139 @@ 97: 97: STDERR: 97: Not an error -212/578 Test #97: demons-a .............................. Passed 1.85 sec +210/578 Test #97: demons-a .............................. Passed 1.25 sec +test 176 + Start 176: plm-boundary-b-stats + +176: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +176: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +176: Test timeout computed to be: 1500 +170: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +170: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd +170: EXPECTED_ERRNO is +173: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +173: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd +173: EXPECTED_ERRNO is +176: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +176: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd +176: EXPECTED_ERRNO is +164: RETVAL: 0 +164: STDOUT: MIN -0.283680 AVE -0.248078 MAX 0.156631 NONZERO 54872 NUMVOX 54872 +164: +164: STDERR: +161: RETVAL: 0 +161: STDOUT: MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872 +161: +161: STDERR: +161: Not an error +164: Not an error +211/578 Test #161: plm-adjust-g-stats .................... Passed 0.37 sec test 179 Start 179: plm-boundary-c-stats 179: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 179: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 179: Test timeout computed to be: 1500 -152: RETVAL: 0 -152: STDOUT: MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872 -152: -152: STDERR: -152: Not an error -213/578 Test #152: plm-adjust-d-stats .................... Passed 0.53 sec +212/578 Test #164: plm-adjust-h-stats .................... Passed 0.35 sec test 182 Start 182: plm-boundary-d-stats 182: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 182: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 182: Test timeout computed to be: 1500 -179: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -179: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd -179: EXPECTED_ERRNO is -182: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -182: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd -182: EXPECTED_ERRNO is +155: RETVAL: 0 +155: STDOUT: MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872 +155: +155: STDERR: +155: Not an error 158: RETVAL: 0 158: STDOUT: MIN -0.107574 AVE -0.019504 MAX 0.207060 NONZERO 54872 NUMVOX 54872 158: 158: STDERR: 158: Not an error -214/578 Test #158: plm-adjust-f-stats .................... Passed 0.54 sec +213/578 Test #155: plm-adjust-e-stats .................... Passed 0.41 sec test 185 Start 185: plm-boundary-e-stats 185: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 185: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 185: Test timeout computed to be: 1500 -161: RETVAL: 0 -161: STDOUT: MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872 -161: -161: STDERR: -161: Not an error -215/578 Test #161: plm-adjust-g-stats .................... Passed 0.47 sec +214/578 Test #158: plm-adjust-f-stats .................... Passed 0.41 sec test 188 Start 188: plm-convert-dicom-a-stats 188: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 188: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 188: Test timeout computed to be: 1500 -185: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -185: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd -185: EXPECTED_ERRNO is +179: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +179: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd +179: EXPECTED_ERRNO is +182: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +182: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd +182: EXPECTED_ERRNO is +146: RETVAL: 0 +146: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 +146: +146: STDERR: +167: RETVAL: 0 +167: STDOUT: MIN -1000.000000 AVE -921.594055 MAX -4.987521 NONZERO 54872 NUMVOX 54872 +167: +167: STDERR: 188: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 188: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha 188: EXPECTED_ERRNO is -170: RETVAL: 0 -170: STDOUT: MIN -1000.000000 AVE -921.627502 MAX -4.987521 NONZERO 54872 NUMVOX 54872 -170: -170: STDERR: -170: Not an error -216/578 Test #170: plm-adjust-j-stats .................... Passed 0.49 sec +146: Not an error +185: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +185: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd +185: EXPECTED_ERRNO is +215/578 Test #146: plm-adjust-b-stats .................... Passed 0.59 sec test 191 Start 191: plm-convert-dicom-b-stats 191: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/dicom_info" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 191: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 191: Test timeout computed to be: 1500 -164: RETVAL: 0 -164: STDOUT: MIN -0.283680 AVE -0.248078 MAX 0.156631 NONZERO 54872 NUMVOX 54872 -164: -164: STDERR: -164: Not an error -217/578 Test #164: plm-adjust-h-stats .................... Passed 0.58 sec +149: RETVAL: 0 +149: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 +149: +149: STDERR: +167: Not an error +216/578 Test #167: plm-adjust-i-stats .................... Passed 0.35 sec test 194 Start 194: plm-convert-dicom-c-stats 194: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 194: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 194: Test timeout computed to be: 1500 -179: RETVAL: 0 -179: STDOUT: MIN 0.000000 AVE 0.105000 MAX 1.000000 NONZERO 840 NUMVOX 8000 -179: -179: STDERR: -179: Not an error -167: RETVAL: 0 -167: STDOUT: MIN -1000.000000 AVE -921.594055 MAX -4.987521 NONZERO 54872 NUMVOX 54872 -167: -167: STDERR: -167: Not an error -218/578 Test #167: plm-adjust-i-stats .................... Passed 0.54 sec +149: Not an error +217/578 Test #149: plm-adjust-c-stats .................... Passed 0.56 sec test 200 Start 200: plm-convert-dicom-donut-a-stats 200: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 200: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 200: Test timeout computed to be: 1500 -219/578 Test #179: plm-boundary-c-stats .................. Passed 0.38 sec -test 203 - Start 203: plm-convert-dicom-donut-b-stats - -203: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -203: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -203: Test timeout computed to be: 1500 -191: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/dicom_info -191: PARMS is --input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm -191: EXPECTED_ERRNO is 194: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 194: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha 194: EXPECTED_ERRNO is +191: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/dicom_info +191: PARMS is --input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm +191: EXPECTED_ERRNO is 200: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 200: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd 200: EXPECTED_ERRNO is +170: RETVAL: 0 +170: STDOUT: MIN -1000.000000 AVE -921.627502 MAX -4.987521 NONZERO 54872 NUMVOX 54872 +170: +170: STDERR: +170: Not an error +218/578 Test #170: plm-adjust-j-stats .................... Passed 0.32 sec +test 203 + Start 203: plm-convert-dicom-donut-b-stats + +203: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +203: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +203: Test timeout computed to be: 1500 203: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 203: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd 203: EXPECTED_ERRNO is @@ -12109,100 +12146,24 @@ 176: 176: STDERR: 176: Not an error -220/578 Test #176: plm-boundary-b-stats .................. Passed 0.59 sec +219/578 Test #176: plm-boundary-b-stats .................. Passed 0.39 sec test 207 Start 207: plm-convert-cxt-stats 207: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-cxt-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 207: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 207: Test timeout computed to be: 1500 -173: RETVAL: 0 -173: STDOUT: MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000 -173: -173: STDERR: -173: Not an error -182: RETVAL: 0 -182: STDOUT: MIN 0.000000 AVE 2.614500 MAX 56.000000 NONZERO 1056 NUMVOX 8000 -182: -182: STDERR: -182: Not an error -221/578 Test #173: plm-boundary-a-stats .................. Passed 0.62 sec -test 209 - Start 209: plm-convert-prefix-fcsv - -209: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-prefix-fcsv" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -209: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -209: Test timeout computed to be: 1500 -222/578 Test #182: plm-boundary-d-stats .................. Passed 0.54 sec -test 211 - Start 211: plm-convert-dose-scale-stats - -211: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dose-scale-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -211: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -211: Test timeout computed to be: 1500 -188: RETVAL: 0 -188: STDOUT: SS_IMAGE: At most 16 structures -188: S 0 NVOX 1648003 -188: S 1 NVOX 0 -188: S 2 NVOX 0 -188: S 3 NVOX 0 -188: S 4 NVOX 0 -188: S 5 NVOX 0 -188: S 6 NVOX 0 -188: S 7 NVOX 0 -188: S 8 NVOX 0 -188: S 9 NVOX 0 -188: S 10 NVOX 0 -188: S 11 NVOX 0 -188: S 12 NVOX 0 -188: S 13 NVOX 0 -188: S 14 NVOX 0 -188: S 15 NVOX 0 -188: -188: STDERR: -188: Not an error -207: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -207: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha -207: EXPECTED_ERRNO is -223/578 Test #188: plm-convert-dicom-a-stats ............. Passed 0.40 sec -test 214 - Start 214: plm-crop-a-stats - -214: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -214: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -214: Test timeout computed to be: 1500 -209: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -209: PARMS is convert;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5 -209: EXPECTED_ERRNO is -211: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -211: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha -211: EXPECTED_ERRNO is -185: RETVAL: 0 -185: STDOUT: MIN 0.000000 AVE 2.142000 MAX 56.000000 NONZERO 840 NUMVOX 8000 -185: -185: STDERR: -185: Not an error -214: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -214: PARMS is header;plm-crop-a.mha -214: EXPECTED_ERRNO is -224/578 Test #185: plm-boundary-e-stats .................. Passed 0.49 sec -test 217 - Start 217: plm-crop-b-stats - -217: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -217: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -217: Test timeout computed to be: 1500 191: RETVAL: 0 191: STDOUT: Reading input file: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm 191: Specific Character Set = ISO_IR 100 191: Image Type = DERIVED\SECONDARY\AXIAL -191: Instance Creation Date = 20230502 -191: Instance Creation Time = 231057 +191: Instance Creation Date = 20240605 +191: Instance Creation Time = 075005 191: SOP Class UID = 1.2.840.10008.5.1.4.1.1.2 -191: SOP Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3544421.1683112263.893293 -191: Study Date = 20230502 +191: SOP Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3381359.1717523409.162321 +191: Study Date = 20240605 191: Series Date = -191: Study Time = 231057 +191: Study Time = 075005 191: Series Time = 191: Accession Number = 191: Modality = CT @@ -12214,7 +12175,7 @@ 191: Operators' Name = 191: Manufacturer's Model Name = Plastimatch 191: Patient's Name = ANONYMOUS -191: Patient ID = PL616837151897465 +191: Patient ID = PL992063409743413 191: Patient's Birth Date = 191: Patient's Sex = O 191: Slice Thickness = 13.157895 @@ -12222,15 +12183,15 @@ 191: Device Serial Number = 191: Software Version(s) = 1.9.4 191: Patient Position = FFS -191: Study Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3544421.1683112263.893273 -191: Series Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3544421.1683112263.893290 +191: Study Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3381359.1717523409.162301 +191: Series Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3381359.1717523409.162318 191: Study ID = 191: Series Number = 191: Acquisition Number = 191: Instance Number = 0 191: Image Position (Patient) = -243.421051\-243.421051\-243.421051 191: Image Orientation (Patient) = 1.000000\0.000000\0.000000\0.000000\1.000000\0.000000 -191: Frame of Reference UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3544421.1683112263.893274 +191: Frame of Reference UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3381359.1717523409.162302 191: Position Reference Indicator = SP 191: Slice Location = -243.421051 191: Samples per Pixel = 1 @@ -12249,35 +12210,126 @@ 191: Rescale Type = HU 191: 191: STDERR: +173: RETVAL: 0 +173: STDOUT: MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000 +173: +173: STDERR: +173: Not an error 191: Not an error -225/578 Test #191: plm-convert-dicom-b-stats ............. Passed 0.37 sec +179: RETVAL: 0 +179: STDOUT: MIN 0.000000 AVE 0.105000 MAX 1.000000 NONZERO 840 NUMVOX 8000 +179: +179: STDERR: +179: Not an error +220/578 Test #173: plm-boundary-a-stats .................. Passed 0.45 sec +test 209 + Start 209: plm-convert-prefix-fcsv + +209: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-prefix-fcsv" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +209: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +209: Test timeout computed to be: 1500 +221/578 Test #191: plm-convert-dicom-b-stats ............. Passed 0.24 sec +test 211 + Start 211: plm-convert-dose-scale-stats + +211: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dose-scale-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +211: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +211: Test timeout computed to be: 1500 +207: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +207: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha +207: EXPECTED_ERRNO is +222/578 Test #179: plm-boundary-c-stats .................. Passed 0.33 sec +test 214 + Start 214: plm-crop-a-stats + +214: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +214: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +214: Test timeout computed to be: 1500 +182: RETVAL: 0 +182: STDOUT: MIN 0.000000 AVE 2.614500 MAX 56.000000 NONZERO 1056 NUMVOX 8000 +182: +182: STDERR: +182: Not an error +223/578 Test #182: plm-boundary-d-stats .................. Passed 0.33 sec +test 217 + Start 217: plm-crop-b-stats + +217: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +217: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +217: Test timeout computed to be: 1500 +211: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +211: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha +211: EXPECTED_ERRNO is +185: RETVAL: 0 +185: STDOUT: MIN 0.000000 AVE 2.142000 MAX 56.000000 NONZERO 840 NUMVOX 8000 +185: +185: STDERR: +185: Not an error +209: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +209: PARMS is convert;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5 +209: EXPECTED_ERRNO is +224/578 Test #185: plm-boundary-e-stats .................. Passed 0.34 sec test 220 Start 220: plm-crop-c-stats 220: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-c.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 220: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 220: Test timeout computed to be: 1500 +214: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +214: PARMS is header;plm-crop-a.mha +214: EXPECTED_ERRNO is 217: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 217: PARMS is header;plm-crop-b.mha 217: EXPECTED_ERRNO is -194: RETVAL: 0 -194: STDOUT: MIN 0.000000 AVE 0.000280 MAX 1.000000 NONZERO 280 NUMVOX 1000000 -194: -194: STDERR: -194: Not an error -226/578 Test #194: plm-convert-dicom-c-stats ............. Passed 0.38 sec +220: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +220: PARMS is header;plm-crop-c.mha +220: EXPECTED_ERRNO is +188: RETVAL: 0 +188: STDOUT: SS_IMAGE: At most 16 structures +188: S 0 NVOX 1648003 +188: S 1 NVOX 0 +188: S 2 NVOX 0 +188: S 3 NVOX 0 +188: S 4 NVOX 0 +188: S 5 NVOX 0 +188: S 6 NVOX 0 +188: S 7 NVOX 0 +188: S 8 NVOX 0 +188: S 9 NVOX 0 +188: S 10 NVOX 0 +188: S 11 NVOX 0 +188: S 12 NVOX 0 +188: S 13 NVOX 0 +188: S 14 NVOX 0 +188: S 15 NVOX 0 +188: +188: STDERR: +188: Not an error +225/578 Test #188: plm-convert-dicom-a-stats ............. Passed 0.37 sec test 222 Start 222: plm-dice-a 222: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 222: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 222: Test timeout computed to be: 1500 -220: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -220: PARMS is header;plm-crop-c.mha -220: EXPECTED_ERRNO is 222: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 222: PARMS is dice;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha 222: EXPECTED_ERRNO is +194: RETVAL: 0 +194: STDOUT: MIN 0.000000 AVE 0.000280 MAX 1.000000 NONZERO 280 NUMVOX 1000000 +194: +194: STDERR: +194: Not an error +226/578 Test #194: plm-convert-dicom-c-stats ............. Passed 0.36 sec +test 224 + Start 224: plm-dice-b + +224: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +224: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +224: Test timeout computed to be: 1500 +224: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +224: PARMS is dice;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha +224: EXPECTED_ERRNO is 200: RETVAL: 0 200: STDOUT: SS_IMAGE: At most 16 structures 200: S 0 NVOX 2623 @@ -12299,228 +12351,13 @@ 200: 200: STDERR: 200: Not an error -227/578 Test #200: plm-convert-dicom-donut-a-stats ....... Passed 0.47 sec -test 224 - Start 224: plm-dice-b - -224: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -224: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -224: Test timeout computed to be: 1500 -203: RETVAL: 0 -203: STDOUT: SS_IMAGE: At most 16 structures -203: S 0 NVOX 1924 -203: S 1 NVOX 0 -203: S 2 NVOX 0 -203: S 3 NVOX 0 -203: S 4 NVOX 0 -203: S 5 NVOX 0 -203: S 6 NVOX 0 -203: S 7 NVOX 0 -203: S 8 NVOX 0 -203: S 9 NVOX 0 -203: S 10 NVOX 0 -203: S 11 NVOX 0 -203: S 12 NVOX 0 -203: S 13 NVOX 0 -203: S 14 NVOX 0 -203: S 15 NVOX 0 -203: -203: STDERR: -203: Not an error -228/578 Test #203: plm-convert-dicom-donut-b-stats ....... Passed 0.47 sec +227/578 Test #200: plm-convert-dicom-donut-a-stats ....... Passed 0.40 sec test 226 Start 226: plm-dice-c 226: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--hausdorff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 226: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 226: Test timeout computed to be: 1500 -224: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -224: PARMS is dice;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha -224: EXPECTED_ERRNO is -226: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -226: PARMS is dice;--hausdorff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha -226: EXPECTED_ERRNO is -559: RETVAL: 0 -559: STDOUT: -559: [PLAN] -559: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha -559: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha -559: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha -559: debug : 0 -559: dose norm : 100 -559: -559: [SETTINGS] -559: flavor: a ** -559: homo_approx: n ** -559: ray_step: 1 ** -559: aperture_out: ** -559: proj_dose_out: ** -559: proj_img_out: ** -559: range_comp_out: ** -559: sigma_out: ** -559: wed_out: ** -559: beam_weight: 1 ** -559: -559: [GEOMETRY & APERTURE] -559: source: 0 -2000 0 ** -559: isocenter: 0 0 0 ** -559: vup: 0 0 1 ** -559: offset: 1500 ** -559: ap_center in pixels: 20 20 ** -559: i_res: 41 41 ** -559: spacing: 3.75 3.75 ** -559: source_size: 0 ** -559: ap_file_in: ** -559: rc_file_in: ** -559: smearing: 5 ** -559: -559: [PEAK] -559: E0: P0 -559: spread: P0 -559: weight: P0 -559: -559: Start dose calculation Beam 1 -559: Plan_calc::compute_beam_dose(beam) entry -- -559: Setting RVRTS = 1 -559: FPD = 347.500001, BPD = 649.116731 -559: 41 41 302 -559: Setting RVRTS = 1 -559: FPD = 347.500001, BPD = 649.116731 -559: 41 41 302 -559: Setting RVRTS = 1 -559: FPD = 347.500001, BPD = 649.116731 -559: 41 41 302 -559: Priority 5. Target detected. -559: Computing beam modifiers for passive target -559: Compute target wepl_min_max... -559: Apply lateral smearing to the target... -559: Smearing = 5.000000, Smearing_ap = 3.750000 -559: Strel size = (1,1), (3,3) -559: 0 1 0 -559: 1 1 1 -559: 0 1 0 -559: Apply proximal and distal ... -559: Compute max wed... -559: Compute the aperture... -559: Compute range compensator... -559: Max wed in the target is 117.554 mm. -559: Min wed in the target is 88.5526 mm. -559: ires = 41 41 -559: proj_vol dim = 41 41 302 -559: prescription min/max: 88.5526 mm, 117.554 mm. -559: -559: 22 Mono-energetic BP used: -559: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 -559: Adding peak to sobp (130.000000, 1.000000, 0.895612) [0.010000, 140.000000] -559: Adding peak to sobp (129.000000, 1.000000, 0.143334) [0.010000, 140.000000] -559: Adding peak to sobp (128.000000, 1.000000, 0.216499) [0.010000, 140.000000] -559: Adding peak to sobp (127.000000, 1.000000, 0.160917) [0.010000, 140.000000] -559: Adding peak to sobp (126.000000, 1.000000, 0.140926) [0.010000, 140.000000] -559: Adding peak to sobp (125.000000, 1.000000, 0.124814) [0.010000, 140.000000] -559: Adding peak to sobp (124.000000, 1.000000, 0.113261) [0.010000, 140.000000] -559: Adding peak to sobp (123.000000, 1.000000, 0.102876) [0.010000, 140.000000] -559: Adding peak to sobp (122.000000, 1.000000, 0.096644) [0.010000, 140.000000] -559: Adding peak to sobp (121.000000, 1.000000, 0.089393) [0.010000, 140.000000] -559: Adding peak to sobp (120.000000, 1.000000, 0.083935) [0.010000, 140.000000] -559: Adding peak to sobp (119.000000, 1.000000, 0.078956) [0.010000, 140.000000] -559: Adding peak to sobp (118.000000, 1.000000, 0.074957) [0.010000, 140.000000] -559: Adding peak to sobp (117.000000, 1.000000, 0.071067) [0.010000, 140.000000] -559: Adding peak to sobp (116.000000, 1.000000, 0.067803) [0.010000, 140.000000] -559: Adding peak to sobp (115.000000, 1.000000, 0.064859) [0.010000, 140.000000] -559: Adding peak to sobp (114.000000, 1.000000, 0.062045) [0.010000, 140.000000] -559: Adding peak to sobp (113.000000, 1.000000, 0.059730) [0.010000, 140.000000] -559: Adding peak to sobp (112.000000, 1.000000, 0.057228) [0.010000, 140.000000] -559: Adding peak to sobp (111.000000, 1.000000, 0.056709) [0.010000, 140.000000] -559: Adding peak to sobp (110.000000, 1.000000, 0.045556) [0.010000, 140.000000] -559: Adding peak to sobp (109.000000, 1.000000, 0.079095) [0.010000, 140.000000] -559: **** (1) -559: Raw dose at the maximum (15, 15, 10) : 1.016 A.U. -559: Dose normalized at the maximum to 1 x 100%. -559: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm -559: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha -559: Sigma: 0.000000 seconds -559: Calc: 3.648324 seconds -559: IO: 0.089478 seconds -559: Reformat: 0.000000 seconds -559: Misc: 0.029104 seconds -559: done. -559: -559: Total execution time : 3.859140 seconds. -559: -559: STDERR: -559: Not an error -229/578 Test #559: proton-dose-4a ........................ Passed 4.35 sec -test 232 - Start 232: plm-dice-d - -232: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--hausdorff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -232: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -232: Test timeout computed to be: 1500 -232: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -232: PARMS is dice;--hausdorff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha -232: EXPECTED_ERRNO is -207: RETVAL: 0 -207: STDOUT: SS_IMAGE: At most 16 structures -207: S 0 NVOX 1648003 -207: S 1 NVOX 0 -207: S 2 NVOX 0 -207: S 3 NVOX 0 -207: S 4 NVOX 0 -207: S 5 NVOX 0 -207: S 6 NVOX 0 -207: S 7 NVOX 0 -207: S 8 NVOX 0 -207: S 9 NVOX 0 -207: S 10 NVOX 0 -207: S 11 NVOX 0 -207: S 12 NVOX 0 -207: S 13 NVOX 0 -207: S 14 NVOX 0 -207: S 15 NVOX 0 -207: -207: STDERR: -207: Not an error -230/578 Test #207: plm-convert-cxt-stats ................. Passed 0.44 sec -test 238 - Start 238: plm-dice-e - -238: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--all;--zcrop;0 0;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -238: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -238: Test timeout computed to be: 1500 -238: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -238: PARMS is dice;--all;--zcrop;0 0;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd -238: EXPECTED_ERRNO is -217: RETVAL: 0 -217: STDOUT: Type = float -217: Planes = 1 -217: Origin = -14.4737 3.9474 -11.8421 -217: Size = 19 11 4 -217: Spacing = 1.3158 1.3158 1.3158 -217: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -217: -217: STDERR: -217: Not an error -231/578 Test #217: plm-crop-b-stats ...................... Passed 0.48 sec -test 241 - Start 241: plm-dice-f - -241: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--all;--zcrop;10 10;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -241: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -241: Test timeout computed to be: 1500 -222: RETVAL: 0 -222: STDOUT: CENTER_OF_MASS -222: ref 4.18425e-05 7.62939e-06 7.62939e-06 -222: cmp 19.7369 7.62939e-06 7.62939e-06 -222: TP: 384 -222: TN: 54296 -222: FN: 128 -222: FP: 64 -222: DICE: 0.800000 -222: SE: 0.750000 -222: SP: 0.998823 -222: -222: STDERR: -222: Not an error 433: RETVAL: 0 433: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 433: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -12839,82 +12676,181 @@ 433: plm_warp_itk: warping... 433: Saving image... 433: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha -433: Load: 0.208318 -433: Run: 6.46675 -433: Save: 0.0302131 -433: Total: 6.70528 +433: Load: 0.123191 +433: Run: 4.22303 +433: Save: 0.037185 +433: Total: 4.38341 433: Finished! 433: 433: STDERR: 433: Not an error -232/578 Test #433: plm-reg-trans-mi-a .................... Passed 7.53 sec +228/578 Test #433: plm-reg-trans-mi-a .................... Passed 4.92 sec +test 232 + Start 232: plm-dice-d + +232: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--hausdorff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +232: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +232: Test timeout computed to be: 1500 +226: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +226: PARMS is dice;--hausdorff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha +226: EXPECTED_ERRNO is +232: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +232: PARMS is dice;--hausdorff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha +232: EXPECTED_ERRNO is +214: RETVAL: 0 +214: STDOUT: Type = float +214: Planes = 1 +214: Origin = -18.4211 -21.0526 -15.7895 +214: Size = 11 16 3 +214: Spacing = 1.3158 1.3158 1.3158 +214: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +214: +214: STDERR: +214: Not an error +229/578 Test #214: plm-crop-a-stats ...................... Passed 0.27 sec +test 238 + Start 238: plm-dice-e + +238: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--all;--zcrop;0 0;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +238: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +238: Test timeout computed to be: 1500 +203: RETVAL: 0 +203: STDOUT: SS_IMAGE: At most 16 structures +203: S 0 NVOX 1924 +203: S 1 NVOX 0 +203: S 2 NVOX 0 +203: S 3 NVOX 0 +203: S 4 NVOX 0 +203: S 5 NVOX 0 +203: S 6 NVOX 0 +203: S 7 NVOX 0 +203: S 8 NVOX 0 +203: S 9 NVOX 0 +203: S 10 NVOX 0 +203: S 11 NVOX 0 +203: S 12 NVOX 0 +203: S 13 NVOX 0 +203: S 14 NVOX 0 +203: S 15 NVOX 0 +203: +203: STDERR: +203: Not an error +230/578 Test #203: plm-convert-dicom-donut-b-stats ....... Passed 0.45 sec +test 241 + Start 241: plm-dice-f + +241: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--all;--zcrop;10 10;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +241: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +241: Test timeout computed to be: 1500 +217: RETVAL: 0 +217: STDOUT: Type = float +217: Planes = 1 +217: Origin = -14.4737 3.9474 -11.8421 +217: Size = 19 11 4 +217: Spacing = 1.3158 1.3158 1.3158 +217: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +217: +217: STDERR: +217: Not an error +231/578 Test #217: plm-crop-b-stats ...................... Passed 0.28 sec test 245 Start 245: plm-dmap-b 245: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;danielsson;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha;--absolute-distance" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 245: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 245: Test timeout computed to be: 1500 -233/578 Test #222: plm-dice-a ............................ Passed 0.44 sec +238: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +238: PARMS is dice;--all;--zcrop;0 0;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd +238: EXPECTED_ERRNO is +241: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +241: PARMS is dice;--all;--zcrop;10 10;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd +241: EXPECTED_ERRNO is +207: RETVAL: 0 +207: STDOUT: SS_IMAGE: At most 16 structures +207: S 0 NVOX 1648003 +207: S 1 NVOX 0 +207: S 2 NVOX 0 +207: S 3 NVOX 0 +207: S 4 NVOX 0 +207: S 5 NVOX 0 +207: S 6 NVOX 0 +207: S 7 NVOX 0 +207: S 8 NVOX 0 +207: S 9 NVOX 0 +207: S 10 NVOX 0 +207: S 11 NVOX 0 +207: S 12 NVOX 0 +207: S 13 NVOX 0 +207: S 14 NVOX 0 +207: S 15 NVOX 0 +207: +207: STDERR: +207: Not an error +245: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +245: PARMS is dmap;--algorithm;danielsson;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha;--absolute-distance +245: EXPECTED_ERRNO is +232/578 Test #207: plm-convert-cxt-stats ................. Passed 0.40 sec test 247 Start 247: plm-dvh-a 247: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-dose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 247: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 247: Test timeout computed to be: 1500 -245: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -245: PARMS is dmap;--algorithm;danielsson;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha;--absolute-distance -245: EXPECTED_ERRNO is -220: RETVAL: 0 -220: STDOUT: Type = float -220: Planes = 1 -220: Origin = -9.2105 -9.2105 -9.2105 -220: Size = 15 15 15 -220: Spacing = 1.3158 1.3158 1.3158 -220: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -220: -220: STDERR: -220: Not an error -241: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -241: PARMS is dice;--all;--zcrop;10 10;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd -241: EXPECTED_ERRNO is 211: RETVAL: 0 211: STDOUT: MIN 0.000000 AVE 0.294533 MAX 77.699997 NONZERO 208 NUMVOX 54872 211: 211: STDERR: 211: Not an error -234/578 Test #220: plm-crop-c-stats ...................... Passed 0.50 sec +233/578 Test #211: plm-convert-dose-scale-stats .......... Passed 0.39 sec test 250 Start 250: plm-dvh-b 250: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--input-dose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 250: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 250: Test timeout computed to be: 1500 -235/578 Test #211: plm-convert-dose-scale-stats .......... Passed 0.65 sec -test 253 - Start 253: plm-dvh-c - -253: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -253: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -253: Test timeout computed to be: 1500 250: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 250: PARMS is dvh;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--input-dose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv 250: EXPECTED_ERRNO is 247: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 247: PARMS is dvh;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-dose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv 247: EXPECTED_ERRNO is -214: RETVAL: 0 -214: STDOUT: Type = float -214: Planes = 1 -214: Origin = -18.4211 -21.0526 -15.7895 -214: Size = 11 16 3 -214: Spacing = 1.3158 1.3158 1.3158 -214: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -214: -214: STDERR: -214: Not an error +222: RETVAL: 0 +222: STDOUT: CENTER_OF_MASS +222: ref 4.18425e-05 7.62939e-06 7.62939e-06 +222: cmp 19.7369 7.62939e-06 7.62939e-06 +222: TP: 384 +222: TN: 54296 +222: FN: 128 +222: FP: 64 +222: DICE: 0.800000 +222: SE: 0.750000 +222: SP: 0.998823 +222: +222: STDERR: +222: Not an error +234/578 Test #222: plm-dice-a ............................ Passed 0.35 sec +test 253 + Start 253: plm-dvh-c + +253: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +253: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +253: Test timeout computed to be: 1500 +220: RETVAL: 0 +220: STDOUT: Type = float +220: Planes = 1 +220: Origin = -9.2105 -9.2105 -9.2105 +220: Size = 15 15 15 +220: Spacing = 1.3158 1.3158 1.3158 +220: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +220: +220: STDERR: +220: Not an error +253: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +253: PARMS is dvh;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv +253: EXPECTED_ERRNO is 224: RETVAL: 0 -224: STDOUT: Time = 0.005502 seconds -224: Time = 0.004340 seconds +224: STDOUT: Time = 0.023642 seconds +224: Time = 0.004673 seconds 224: CENTER_OF_MASS 224: ref 8.39233e-05 8.47711e-06 8.47711e-06 224: cmp 8.39233e-05 8.47711e-06 8.47711e-06 @@ -12928,17 +12864,14 @@ 224: 224: STDERR: 224: Not an error -236/578 Test #214: plm-crop-a-stats ...................... Passed 0.67 sec +235/578 Test #224: plm-dice-b ............................ Passed 0.37 sec test 257 Start 257: plm-fill-a-stats 257: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-fill-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 257: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 257: Test timeout computed to be: 1500 -253: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -253: PARMS is dvh;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv -253: EXPECTED_ERRNO is -237/578 Test #224: plm-dice-b ............................ Passed 0.44 sec +236/578 Test #220: plm-crop-c-stats ...................... Passed 0.46 sec test 260 Start 260: plm-mask-a-stats @@ -12957,7 +12890,7 @@ 226: 226: STDERR: 226: Not an error -238/578 Test #226: plm-dice-c ............................ Passed 0.43 sec +237/578 Test #226: plm-dice-c ............................ Passed 0.34 sec test 263 Start 263: plm-gamma-a-stats @@ -12985,16 +12918,25 @@ 232: 232: STDERR: 232: Not an error -239/578 Test #232: plm-dice-d ............................ Passed 0.52 sec +238/578 Test #232: plm-dice-d ............................ Passed 0.41 sec test 266 Start 266: plm-gamma-b-stats 266: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 266: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 266: Test timeout computed to be: 1500 -266: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -266: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha -266: EXPECTED_ERRNO is +245: RETVAL: 0 +245: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha +245: +245: STDERR: +245: Not an error +239/578 Test #245: plm-dmap-b ............................ Passed 0.40 sec +test 268 + Start 268: plm-gamma-c + +268: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +268: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +268: Test timeout computed to be: 1500 238: RETVAL: 0 238: STDOUT: CENTER_OF_MASS 238: ref 0 0 7.5 @@ -13017,27 +12959,10 @@ 238: 238: STDERR: 238: Not an error -240/578 Test #238: plm-dice-e ............................ Passed 0.63 sec -test 268 - Start 268: plm-gamma-c - -268: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -268: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -268: Test timeout computed to be: 1500 -247: RETVAL: 0 -247: STDOUT: Creating Histogram... -247: Your Histogram will have 256 bins and will be 0.500000 Gy large -247: checking voxel size... -247: 13.1579 13.1579 13.1579 -247: 13.1579 13.1579 13.1579 -247: Dose and ss-img have the same size. Resample not necessary. -247: -247: STDERR: -247: Not an error -268: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -268: PARMS is gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha -268: EXPECTED_ERRNO is -241/578 Test #247: plm-dvh-a ............................. Passed 0.50 sec +266: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +266: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha +266: EXPECTED_ERRNO is +240/578 Test #238: plm-dice-e ............................ Passed 0.44 sec test 270 Start 270: plm-gamma-d @@ -13055,13 +12980,87 @@ 250: 250: STDERR: 250: Not an error -242/578 Test #250: plm-dvh-b ............................. Passed 0.48 sec +241/578 Test #250: plm-dvh-b ............................. Passed 0.35 sec test 273 Start 273: plm-maximum-a-stats 273: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-maximum-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 273: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 273: Test timeout computed to be: 1500 +268: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +268: PARMS is gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha +268: EXPECTED_ERRNO is +241: RETVAL: 0 +241: STDOUT: CENTER_OF_MASS +241: ref 0 0 7.5 +241: cmp 0 0 7.5 +241: TP: 17380 +241: TN: 4620 +241: FN: 0 +241: FP: 0 +241: DICE: 1.000000 +241: SE: 1.000000 +241: SP: 1.000000 +241: Hausdorff distance = 0.000000 +241: Avg average Hausdorff distance = 0.000000 +241: Max average Hausdorff distance = 0.000000 +241: Percent (0.95) Hausdorff distance = 0.000000 +241: Hausdorff distance (boundary) = 0.000000 +241: Avg average Hausdorff distance (boundary) = 0.000000 +241: Max average Hausdorff distance (boundary) = 0.000000 +241: Percent (0.95) Hausdorff distance (boundary) = 0.000000 +241: +241: STDERR: +241: Not an error +242/578 Test #241: plm-dice-f ............................ Passed 0.46 sec +test 276 + Start 276: plm-multiply-a-stats + +276: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +276: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +276: Test timeout computed to be: 1500 +270: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +270: PARMS is gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha;--ref-only-threshold;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha +270: EXPECTED_ERRNO is +247: RETVAL: 0 +247: STDOUT: Creating Histogram... +247: Your Histogram will have 256 bins and will be 0.500000 Gy large +247: checking voxel size... +247: 13.1579 13.1579 13.1579 +247: 13.1579 13.1579 13.1579 +247: Dose and ss-img have the same size. Resample not necessary. +247: +247: STDERR: +247: Not an error +243/578 Test #247: plm-dvh-a ............................. Passed 0.45 sec +test 279 + Start 279: plm-multiply-vf-a-stats + +279: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +279: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +279: Test timeout computed to be: 1500 +273: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +273: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd +273: EXPECTED_ERRNO is +260: RETVAL: 0 +260: STDOUT: MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872 +260: +260: STDERR: +276: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +276: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd +276: EXPECTED_ERRNO is +260: Not an error +244/578 Test #260: plm-mask-a-stats ...................... Passed 0.36 sec +test 283 + Start 283: plm-reg-align-center-stats + +283: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-align-center-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +283: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +283: Test timeout computed to be: 1500 +257: RETVAL: 0 +257: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872 +257: +257: STDERR: 209: RETVAL: 0 209: STDOUT: Trying to load ss_list: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt 209: Setting PIH from M_SS_IMG @@ -13118,84 +13117,18 @@ 209: 209: STDERR: 209: Not an error -270: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -270: PARMS is gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha;--ref-only-threshold;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha -270: EXPECTED_ERRNO is -273: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -273: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd -273: EXPECTED_ERRNO is -243/578 Test #209: plm-convert-prefix-fcsv ............... Passed 1.19 sec -test 276 - Start 276: plm-multiply-a-stats - -276: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -276: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -276: Test timeout computed to be: 1500 -245: RETVAL: 0 -245: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha -245: -245: STDERR: -245: Not an error -244/578 Test #245: plm-dmap-b ............................ Passed 0.63 sec -test 279 - Start 279: plm-multiply-vf-a-stats - -279: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -279: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -279: Test timeout computed to be: 1500 -276: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -276: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd -276: EXPECTED_ERRNO is -241: RETVAL: 0 -241: STDOUT: CENTER_OF_MASS -241: ref 0 0 7.5 -241: cmp 0 0 7.5 -241: TP: 17380 -241: TN: 4620 -241: FN: 0 -241: FP: 0 -241: DICE: 1.000000 -241: SE: 1.000000 -241: SP: 1.000000 -241: Hausdorff distance = 0.000000 -241: Avg average Hausdorff distance = 0.000000 -241: Max average Hausdorff distance = 0.000000 -241: Percent (0.95) Hausdorff distance = 0.000000 -241: Hausdorff distance (boundary) = 0.000000 -241: Avg average Hausdorff distance (boundary) = 0.000000 -241: Max average Hausdorff distance (boundary) = 0.000000 -241: Percent (0.95) Hausdorff distance (boundary) = 0.000000 -241: -241: STDERR: -241: Not an error -266: RETVAL: 0 -266: STDOUT: MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000 -266: -266: STDERR: -266: Not an error -245/578 Test #266: plm-gamma-b-stats ..................... Passed 0.38 sec -test 283 - Start 283: plm-reg-align-center-stats - -283: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-align-center-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -283: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -283: Test timeout computed to be: 1500 -279: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -279: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd -279: EXPECTED_ERRNO is -246/578 Test #241: plm-dice-f ............................ Passed 0.71 sec +245/578 Test #209: plm-convert-prefix-fcsv ............... Passed 0.88 sec test 286 Start 286: plm-reg-itk-translation-stats 286: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-translation-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 286: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 286: Test timeout computed to be: 1500 -260: RETVAL: 0 -260: STDOUT: MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872 -260: -260: STDERR: -260: Not an error -247/578 Test #260: plm-mask-a-stats ...................... Passed 0.59 sec +279: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +279: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd +279: EXPECTED_ERRNO is +257: Not an error +246/578 Test #257: plm-fill-a-stats ...................... Passed 0.39 sec test 289 Start 289: plm-reg-itk-rigid-a-stats-1 @@ -13205,6 +13138,9 @@ 283: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 283: PARMS is compare;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha 283: EXPECTED_ERRNO is +289: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +289: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-intermediate-img.mha +289: EXPECTED_ERRNO is 286: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 286: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha 286: EXPECTED_ERRNO is @@ -13213,37 +13149,125 @@ 263: 263: STDERR: 263: Not an error -289: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -289: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-intermediate-img.mha -289: EXPECTED_ERRNO is -248/578 Test #263: plm-gamma-a-stats ..................... Passed 0.63 sec +247/578 Test #263: plm-gamma-a-stats ..................... Passed 0.47 sec test 291 Start 291: plm-reg-itk-rigid-a-stats-2 291: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 291: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 291: Test timeout computed to be: 1500 -257: RETVAL: 0 -257: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872 -257: -257: STDERR: -257: Not an error -249/578 Test #257: plm-fill-a-stats ...................... Passed 0.70 sec -test 294 - Start 294: plm-reg-itk-similarity-stats-1 - -294: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -294: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -294: Test timeout computed to be: 1500 -291: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -291: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha -291: EXPECTED_ERRNO is -294: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -294: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha -294: EXPECTED_ERRNO is +559: RETVAL: 0 +559: STDOUT: +559: [PLAN] +559: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha +559: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha +559: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha +559: debug : 0 +559: dose norm : 100 +559: +559: [SETTINGS] +559: flavor: a ** +559: homo_approx: n ** +559: ray_step: 1 ** +559: aperture_out: ** +559: proj_dose_out: ** +559: proj_img_out: ** +559: range_comp_out: ** +559: sigma_out: ** +559: wed_out: ** +559: beam_weight: 1 ** +559: +559: [GEOMETRY & APERTURE] +559: source: 0 -2000 0 ** +559: isocenter: 0 0 0 ** +559: vup: 0 0 1 ** +559: offset: 1500 ** +559: ap_center in pixels: 20 20 ** +559: i_res: 41 41 ** +559: spacing: 3.75 3.75 ** +559: source_size: 0 ** +559: ap_file_in: ** +559: rc_file_in: ** +559: smearing: 5 ** +559: +559: [PEAK] +559: E0: P0 +559: spread: P0 +559: weight: P0 +559: +559: Start dose calculation Beam 1 +559: Plan_calc::compute_beam_dose(beam) entry -- +559: Setting RVRTS = 1 +559: FPD = 347.500001, BPD = 649.116731 +559: 41 41 302 +559: Setting RVRTS = 1 +559: FPD = 347.500001, BPD = 649.116731 +559: 41 41 302 +559: Setting RVRTS = 1 +559: FPD = 347.500001, BPD = 649.116731 +559: 41 41 302 +559: Priority 5. Target detected. +559: Computing beam modifiers for passive target +559: Compute target wepl_min_max... +559: Apply lateral smearing to the target... +559: Smearing = 5.000000, Smearing_ap = 3.750000 +559: Strel size = (1,1), (3,3) +559: 0 1 0 +559: 1 1 1 +559: 0 1 0 +559: Apply proximal and distal ... +559: Compute max wed... +559: Compute the aperture... +559: Compute range compensator... +559: Max wed in the target is 117.554 mm. +559: Min wed in the target is 88.5526 mm. +559: ires = 41 41 +559: proj_vol dim = 41 41 302 +559: prescription min/max: 88.5526 mm, 117.554 mm. +559: +559: 22 Mono-energetic BP used: +559: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 +559: Adding peak to sobp (130.000000, 1.000000, 0.895612) [0.010000, 140.000000] +559: Adding peak to sobp (129.000000, 1.000000, 0.143334) [0.010000, 140.000000] +559: Adding peak to sobp (128.000000, 1.000000, 0.216499) [0.010000, 140.000000] +559: Adding peak to sobp (127.000000, 1.000000, 0.160917) [0.010000, 140.000000] +559: Adding peak to sobp (126.000000, 1.000000, 0.140926) [0.010000, 140.000000] +559: Adding peak to sobp (125.000000, 1.000000, 0.124814) [0.010000, 140.000000] +559: Adding peak to sobp (124.000000, 1.000000, 0.113261) [0.010000, 140.000000] +559: Adding peak to sobp (123.000000, 1.000000, 0.102876) [0.010000, 140.000000] +559: Adding peak to sobp (122.000000, 1.000000, 0.096644) [0.010000, 140.000000] +559: Adding peak to sobp (121.000000, 1.000000, 0.089393) [0.010000, 140.000000] +559: Adding peak to sobp (120.000000, 1.000000, 0.083935) [0.010000, 140.000000] +559: Adding peak to sobp (119.000000, 1.000000, 0.078956) [0.010000, 140.000000] +559: Adding peak to sobp (118.000000, 1.000000, 0.074957) [0.010000, 140.000000] +559: Adding peak to sobp (117.000000, 1.000000, 0.071067) [0.010000, 140.000000] +559: Adding peak to sobp (116.000000, 1.000000, 0.067803) [0.010000, 140.000000] +559: Adding peak to sobp (115.000000, 1.000000, 0.064859) [0.010000, 140.000000] +559: Adding peak to sobp (114.000000, 1.000000, 0.062045) [0.010000, 140.000000] +559: Adding peak to sobp (113.000000, 1.000000, 0.059730) [0.010000, 140.000000] +559: Adding peak to sobp (112.000000, 1.000000, 0.057228) [0.010000, 140.000000] +559: Adding peak to sobp (111.000000, 1.000000, 0.056709) [0.010000, 140.000000] +559: Adding peak to sobp (110.000000, 1.000000, 0.045556) [0.010000, 140.000000] +559: Adding peak to sobp (109.000000, 1.000000, 0.079095) [0.010000, 140.000000] +559: **** (1) +559: Raw dose at the maximum (15, 15, 10) : 1.016 A.U. +559: Dose normalized at the maximum to 1 x 100%. +559: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm +559: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha +559: Sigma: 0.000000 seconds +559: Calc: 2.834866 seconds +559: IO: 0.204728 seconds +559: Reformat: 0.000000 seconds +559: Misc: 0.052697 seconds +559: done. +559: +559: Total execution time : 3.143643 seconds. +559: +559: STDERR: +559: Not an error 253: RETVAL: 0 -253: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542141.1683112258.256388RTDOSE -253: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542141.1683112258.256389RTSTRUCT +253: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379328.1717523405.358729RTDOSE +253: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379328.1717523405.358730RTSTRUCT 253: Found DCM_ReferencedFrameOfReferenceSequence! 253: Found DCM_RTReferencedStudySequence! 253: Trying to load rt dose. @@ -13263,7 +13287,7 @@ 253: Rasterizing... 253: Converting... 253: Finished rasterization. -253: Time = 0.053827 seconds +253: Time = 0.048669 seconds 253: Creating Histogram... 253: Your Histogram will have 256 bins and will be 0.500000 Gy large 253: checking voxel size... @@ -13272,14 +13296,267 @@ 253: Dose and ss-img have the same size. Resample not necessary. 253: 253: STDERR: +248/578 Test #559: proton-dose-4a ........................ Passed 3.73 sec +test 294 + Start 294: plm-reg-itk-similarity-stats-1 + +294: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +294: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +294: Test timeout computed to be: 1500 253: Not an error -250/578 Test #253: plm-dvh-c ............................. Passed 0.83 sec +249/578 Test #253: plm-dvh-c ............................. Passed 0.58 sec test 296 Start 296: plm-reg-itk-similarity-stats-2 296: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 296: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 296: Test timeout computed to be: 1500 +266: RETVAL: 0 +266: STDOUT: MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000 +266: +266: STDERR: +266: Not an error +291: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +291: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha +291: EXPECTED_ERRNO is +250/578 Test #266: plm-gamma-b-stats ..................... Passed 0.40 sec +test 299 + Start 299: plm-reg-itk-bspline-stats-1 + +299: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +299: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +299: Test timeout computed to be: 1500 +294: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +294: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha +294: EXPECTED_ERRNO is +296: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +296: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha +296: EXPECTED_ERRNO is +571: RETVAL: 0 +571: STDOUT: +571: [PLAN] +571: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha +571: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha +571: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha +571: debug : 0 +571: dose norm : 100 +571: +571: [SETTINGS] +571: flavor: a ** +571: homo_approx: n ** +571: ray_step: 1 ** +571: aperture_out: ** +571: proj_dose_out: ** +571: proj_img_out: ** +571: range_comp_out: ** +571: sigma_out: ** +571: wed_out: ** +571: beam_weight: 1 ** +571: +571: [GEOMETRY & APERTURE] +571: source: 0 -2000 0 ** +571: isocenter: 0 0 0 ** +571: vup: 0 0 1 ** +571: offset: 1500 ** +571: ap_center in pixels: 20 20 ** +571: i_res: 41 41 ** +571: spacing: 3.75 3.75 ** +571: source_size: 0 ** +571: ap_file_in: ** +571: rc_file_in: ** +571: smearing: 5 ** +571: +571: [PEAK] +571: E0: P0 +571: spread: P0 +571: weight: P0 +571: +571: Start dose calculation Beam 1 +571: Plan_calc::compute_beam_dose(beam) entry -- +571: Setting RVRTS = 1 +571: FPD = 347.500001, BPD = 649.116731 +571: 41 41 302 +571: Setting RVRTS = 1 +571: FPD = 347.500001, BPD = 649.116731 +571: 41 41 302 +571: Setting RVRTS = 1 +571: FPD = 347.500001, BPD = 649.116731 +571: 41 41 302 +571: Priority 5. Target detected. +571: Compute target wepl_min_max... +571: Apply lateral smearing to the target... +571: Smearing = 5.000000, Smearing_ap = 3.750000 +571: Strel size = (1,1), (3,3) +571: 0 1 0 +571: 1 1 1 +571: 0 1 0 +571: Apply proximal and distal ... +571: Compute max wed... +571: Compute the aperture... +571: Max wed in the target is 117.554 mm. +571: Min wed in the target is 88.5523 mm. +571: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. +571: Min and max energies for treating the PTV: 109 MeV and 130 MeV. +571: +571: 22 Mono-energetic BP used: +571: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 +571: Optimization of the particle number map for any mono-energetic slice in progress... +571: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Raw dose at the maximum (-15, 15, -10) : 1.01597 A.U. +571: Dose normalized at the maximum to 1 x 100%. +571: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm +571: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha +571: Sigma: 0.000000 seconds +571: Calc: 3.251471 seconds +571: IO: 0.060686 seconds +571: Reformat: 0.000000 seconds +571: Misc: 0.013777 seconds +571: done. +571: +571: Total execution time : 3.371417 seconds. +571: +571: STDERR: +299: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +299: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha +299: EXPECTED_ERRNO is +571: Not an error +251/578 Test #571: proton-dose-6a ........................ Passed 3.73 sec +test 303 + Start 303: plm-reg-itk-demons-stats-2 + +303: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +303: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +303: Test timeout computed to be: 1500 +279: RETVAL: 0 +279: STDOUT: Min: 100.000 100.000 100.000 +279: Mean: 100.000 100.000 100.000 +279: Max: 100.000 100.000 100.000 +279: Mean abs: 100.000 100.000 100.000 +279: Ave len: 173.205 +279: Jacobian: MINJAC 1 MAXJAC 1 +279: Energy: MINDIL 0 MAXDIL 0 +279: MAXSTRAIN 0 TOTSTRAIN 0 +279: Second derivatives: MINSECDER 0 MAXSECDER 0 +279: AVESECDER 0 INTSECDER 0 +279: Max second derivative at: (1 1 1) +279: +279: STDERR: +279: Not an error +252/578 Test #279: plm-multiply-vf-a-stats ............... Passed 0.34 sec +test 305 + Start 305: plm-reg-itk-demons-diff + +305: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-diff" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +305: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +305: Test timeout computed to be: 1500 +276: RETVAL: 0 +276: STDOUT: MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872 +276: +276: STDERR: +276: Not an error +253/578 Test #276: plm-multiply-a-stats .................. Passed 0.41 sec +test 307 + Start 307: plm-reg-itk-demons-logd + +307: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-logd" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +307: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +307: Test timeout computed to be: 1500 +283: RETVAL: 0 +283: STDOUT: MIN -0.000061 AVE 0.000001 MAX 0.000061 +283: MAE 0.000002 MSE 0.000000 +283: DIF 2274 NUM 54872 +283: +283: STDERR: +283: Not an error +303: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +303: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha +303: EXPECTED_ERRNO is +254/578 Test #283: plm-reg-align-center-stats ............ Passed 0.33 sec +test 309 + Start 309: plm-reg-itk-demons-sym-logd + +309: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-sym-logd" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +309: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +309: Test timeout computed to be: 1500 +273: RETVAL: 0 +273: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872 +273: +273: STDERR: +273: Not an error +307: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +307: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt +307: EXPECTED_ERRNO is +255/578 Test #273: plm-maximum-a-stats ................... Passed 0.46 sec +test 312 + Start 312: plm-bsp-mse-c-stats + +312: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +312: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +312: Test timeout computed to be: 1500 +305: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +305: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt +305: EXPECTED_ERRNO is +312: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +312: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha +312: EXPECTED_ERRNO is +270: RETVAL: 0 +270: STDOUT: Gamma dose max is 70.000000 +270: Time = 0.003183 seconds +270: Gamma calculation is under progress... +270: analysis threshold = 7.00 Gy +270: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha +270: Pass rate = 89.999998 % +270: +270: STDERR: +270: Not an error +268: RETVAL: 0 +268: STDOUT: Gamma dose max is 70.000000 +268: Time = 0.002597 seconds +268: Gamma calculation is under progress... +268: analysis threshold = 7.00 Gy +268: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha +268: Pass rate = 90.719998 % +268: +268: STDERR: +309: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +309: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt +309: EXPECTED_ERRNO is +268: Not an error +256/578 Test #270: plm-gamma-d ........................... Passed 0.52 sec +test 315 + Start 315: plm-bsp-mse-g-stats + +315: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +315: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +315: Test timeout computed to be: 1500 +257/578 Test #268: plm-gamma-c ........................... Passed 0.54 sec +test 318 + Start 318: plm-bsp-mse-h-stats + +318: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-h-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +318: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +318: Test timeout computed to be: 1500 565: RETVAL: 0 565: STDOUT: 565: [PLAN] @@ -13376,335 +13653,95 @@ 565: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 565: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha 565: Sigma: 0.000000 seconds -565: Calc: 4.678075 seconds -565: IO: 0.148506 seconds +565: Calc: 3.476025 seconds +565: IO: 0.100224 seconds 565: Reformat: 0.000000 seconds -565: Misc: 0.043993 seconds +565: Misc: 0.045463 seconds 565: done. 565: -565: Total execution time : 4.930599 seconds. +565: Total execution time : 3.664905 seconds. 565: 565: STDERR: 565: Not an error -251/578 Test #565: proton-dose-5a ........................ Passed 5.47 sec -test 299 - Start 299: plm-reg-itk-bspline-stats-1 - -299: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -299: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -299: Test timeout computed to be: 1500 -296: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -296: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha -296: EXPECTED_ERRNO is -299: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -299: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha -299: EXPECTED_ERRNO is -268: RETVAL: 0 -268: STDOUT: Gamma dose max is 70.000000 -268: Time = 0.007669 seconds -268: Gamma calculation is under progress... -268: analysis threshold = 7.00 Gy -268: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha -268: Pass rate = 90.719998 % -268: -268: STDERR: -268: Not an error -252/578 Test #268: plm-gamma-c ........................... Passed 0.60 sec -test 303 - Start 303: plm-reg-itk-demons-stats-2 - -303: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -303: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -303: Test timeout computed to be: 1500 -279: RETVAL: 0 -279: STDOUT: Min: 100.000 100.000 100.000 -279: Mean: 100.000 100.000 100.000 -279: Max: 100.000 100.000 100.000 -279: Mean abs: 100.000 100.000 100.000 -279: Ave len: 173.205 -279: Jacobian: MINJAC 1 MAXJAC 1 -279: Energy: MINDIL 0 MAXDIL 0 -279: MAXSTRAIN 0 TOTSTRAIN 0 -279: Second derivatives: MINSECDER 0 MAXSECDER 0 -279: AVESECDER 0 INTSECDER 0 -279: Max second derivative at: (1 1 1) -279: -279: STDERR: -279: Not an error -253/578 Test #279: plm-multiply-vf-a-stats ............... Passed 0.44 sec -test 305 - Start 305: plm-reg-itk-demons-diff - -305: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-diff" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -305: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -305: Test timeout computed to be: 1500 -276: RETVAL: 0 -276: STDOUT: MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872 -276: -276: STDERR: -276: Not an error -254/578 Test #276: plm-multiply-a-stats .................. Passed 0.51 sec -test 307 - Start 307: plm-reg-itk-demons-logd - -307: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-logd" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -307: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -307: Test timeout computed to be: 1500 -273: RETVAL: 0 -273: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872 -273: -273: STDERR: -273: Not an error -255/578 Test #273: plm-maximum-a-stats ................... Passed 0.58 sec -test 309 - Start 309: plm-reg-itk-demons-sym-logd - -309: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-sym-logd" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -309: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -309: Test timeout computed to be: 1500 -303: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -303: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha -303: EXPECTED_ERRNO is -305: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -305: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt -305: EXPECTED_ERRNO is -270: RETVAL: 0 -270: STDOUT: Gamma dose max is 70.000000 -270: Time = 0.008566 seconds -270: Gamma calculation is under progress... -270: analysis threshold = 7.00 Gy -270: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha -270: Pass rate = 89.999998 % -270: -270: STDERR: -270: Not an error -307: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -307: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt -307: EXPECTED_ERRNO is -256/578 Test #270: plm-gamma-d ........................... Passed 0.65 sec -test 312 - Start 312: plm-bsp-mse-c-stats - -312: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -312: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -312: Test timeout computed to be: 1500 -309: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -309: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt -309: EXPECTED_ERRNO is -312: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -312: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha -312: EXPECTED_ERRNO is -283: RETVAL: 0 -283: STDOUT: MIN -0.000061 AVE 0.000001 MAX 0.000061 -283: MAE 0.000002 MSE 0.000000 -283: DIF 2274 NUM 54872 -283: -283: STDERR: -283: Not an error -257/578 Test #283: plm-reg-align-center-stats ............ Passed 0.57 sec -test 315 - Start 315: plm-bsp-mse-g-stats - -315: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -315: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -315: Test timeout computed to be: 1500 -291: RETVAL: 0 -291: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872 -291: -291: STDERR: -291: Not an error -258/578 Test #291: plm-reg-itk-rigid-a-stats-2 ........... Passed 0.48 sec -test 318 - Start 318: plm-bsp-mse-h-stats - -318: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-h-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -318: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -318: Test timeout computed to be: 1500 -315: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -315: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha -315: EXPECTED_ERRNO is -318: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -318: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha -318: EXPECTED_ERRNO is +289: RETVAL: 0 +289: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872 +289: +289: STDERR: +289: Not an error 286: RETVAL: 0 286: STDOUT: MIN -999.914246 AVE -677.557922 MAX 0.000000 NONZERO 43320 NUMVOX 54872 286: 286: STDERR: 286: Not an error -259/578 Test #286: plm-reg-itk-translation-stats ......... Passed 0.65 sec +258/578 Test #565: proton-dose-5a ........................ Passed 3.99 sec test 321 Start 321: plm-bsp-mse-i-stats 321: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-i-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 321: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 321: Test timeout computed to be: 1500 -289: RETVAL: 0 -289: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872 -289: -289: STDERR: -289: Not an error -260/578 Test #289: plm-reg-itk-rigid-a-stats-1 ........... Passed 0.66 sec +259/578 Test #289: plm-reg-itk-rigid-a-stats-1 ........... Passed 0.41 sec test 324 Start 324: plm-bsp-mse-k-stats 324: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-k-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 324: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 324: Test timeout computed to be: 1500 -299: RETVAL: 0 -299: STDOUT: MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872 -299: -299: STDERR: -299: Not an error -321: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -321: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha -321: EXPECTED_ERRNO is -261/578 Test #299: plm-reg-itk-bspline-stats-1 ........... Passed 0.47 sec +315: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +315: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha +315: EXPECTED_ERRNO is +318: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +318: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha +318: EXPECTED_ERRNO is +291: RETVAL: 0 +291: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872 +291: +291: STDERR: +291: Not an error +260/578 Test #286: plm-reg-itk-translation-stats ......... Passed 0.44 sec test 327 Start 327: plm-bsp-mse-l-stats 327: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-l-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 327: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 327: Test timeout computed to be: 1500 -324: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -324: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha -324: EXPECTED_ERRNO is -294: RETVAL: 0 -294: STDOUT: MIN -1000.000000 AVE -981.187012 MAX 0.000000 NONZERO 54152 NUMVOX 54872 -294: -294: STDERR: -294: Not an error -262/578 Test #294: plm-reg-itk-similarity-stats-1 ........ Passed 0.62 sec +261/578 Test #291: plm-reg-itk-rigid-a-stats-2 ........... Passed 0.34 sec test 329 Start 329: plm-bsp-mse-o 329: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-o" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 329: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 329: Test timeout computed to be: 1500 +321: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +321: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha +321: EXPECTED_ERRNO is +324: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +324: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha +324: EXPECTED_ERRNO is +329: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +329: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt +329: EXPECTED_ERRNO is 327: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 327: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha 327: EXPECTED_ERRNO is -571: RETVAL: 0 -571: STDOUT: -571: [PLAN] -571: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha -571: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha -571: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha -571: debug : 0 -571: dose norm : 100 -571: -571: [SETTINGS] -571: flavor: a ** -571: homo_approx: n ** -571: ray_step: 1 ** -571: aperture_out: ** -571: proj_dose_out: ** -571: proj_img_out: ** -571: range_comp_out: ** -571: sigma_out: ** -571: wed_out: ** -571: beam_weight: 1 ** -571: -571: [GEOMETRY & APERTURE] -571: source: 0 -2000 0 ** -571: isocenter: 0 0 0 ** -571: vup: 0 0 1 ** -571: offset: 1500 ** -571: ap_center in pixels: 20 20 ** -571: i_res: 41 41 ** -571: spacing: 3.75 3.75 ** -571: source_size: 0 ** -571: ap_file_in: ** -571: rc_file_in: ** -571: smearing: 5 ** -571: -571: [PEAK] -571: E0: P0 -571: spread: P0 -571: weight: P0 -571: -571: Start dose calculation Beam 1 -571: Plan_calc::compute_beam_dose(beam) entry -- -571: Setting RVRTS = 1 -571: FPD = 347.500001, BPD = 649.116731 -571: 41 41 302 -571: Setting RVRTS = 1 -571: FPD = 347.500001, BPD = 649.116731 -571: 41 41 302 -571: Setting RVRTS = 1 -571: FPD = 347.500001, BPD = 649.116731 -571: 41 41 302 -571: Priority 5. Target detected. -571: Compute target wepl_min_max... -571: Apply lateral smearing to the target... -571: Smearing = 5.000000, Smearing_ap = 3.750000 -571: Strel size = (1,1), (3,3) -571: 0 1 0 -571: 1 1 1 -571: 0 1 0 -571: Apply proximal and distal ... -571: Compute max wed... -571: Compute the aperture... -571: Max wed in the target is 117.554 mm. -571: Min wed in the target is 88.5523 mm. -571: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. -571: Min and max energies for treating the PTV: 109 MeV and 130 MeV. -571: -571: 22 Mono-energetic BP used: -571: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 -571: Optimization of the particle number map for any mono-energetic slice in progress... -571: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Raw dose at the maximum (-15, 15, -10) : 1.01597 A.U. -571: Dose normalized at the maximum to 1 x 100%. -571: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm -571: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha -571: Sigma: 0.000000 seconds -571: Calc: 5.188952 seconds -571: IO: 0.070795 seconds -571: Reformat: 0.000000 seconds -571: Misc: 0.015082 seconds -571: done. -571: -571: Total execution time : 5.330631 seconds. -571: -571: STDERR: -571: Not an error -263/578 Test #571: proton-dose-6a ........................ Passed 5.80 sec +294: RETVAL: 0 +294: STDOUT: MIN -1000.000000 AVE -981.187012 MAX 0.000000 NONZERO 54152 NUMVOX 54872 +294: +294: STDERR: +294: Not an error +262/578 Test #294: plm-reg-itk-similarity-stats-1 ........ Passed 0.41 sec test 331 Start 331: plm-bsp-mse-p 331: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-p" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 331: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 331: Test timeout computed to be: 1500 -329: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -329: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt -329: EXPECTED_ERRNO is -296: RETVAL: 0 -296: STDOUT: MIN -1000.000000 AVE -940.684265 MAX 0.000000 NONZERO 52716 NUMVOX 54872 -296: -296: STDERR: -296: Not an error -264/578 Test #296: plm-reg-itk-similarity-stats-2 ........ Passed 0.58 sec +299: RETVAL: 0 +299: STDOUT: MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872 +299: +299: STDERR: +299: Not an error +263/578 Test #299: plm-reg-itk-bspline-stats-1 ........... Passed 0.40 sec test 333 Start 333: plm-bsp-mse-q @@ -13717,39 +13754,39 @@ 333: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 333: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q.txt 333: EXPECTED_ERRNO is -315: RETVAL: 0 -315: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -315: -315: STDERR: -315: Not an error -265/578 Test #315: plm-bsp-mse-g-stats ................... Passed 0.42 sec +296: RETVAL: 0 +296: STDOUT: MIN -1000.000000 AVE -940.684265 MAX 0.000000 NONZERO 52716 NUMVOX 54872 +296: +296: STDERR: +303: RETVAL: 0 +303: STDOUT: MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872 +303: +303: STDERR: +303: Not an error +296: Not an error +264/578 Test #296: plm-reg-itk-similarity-stats-2 ........ Passed 0.48 sec test 335 Start 335: plm-bsp-mse-r 335: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-r" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 335: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 335: Test timeout computed to be: 1500 -335: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -335: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt -335: EXPECTED_ERRNO is -318: RETVAL: 0 -318: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -318: -318: STDERR: -318: Not an error -303: RETVAL: 0 -303: STDOUT: MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872 -303: -303: STDERR: -266/578 Test #318: plm-bsp-mse-h-stats ................... Passed 0.46 sec +265/578 Test #303: plm-reg-itk-demons-stats-2 ............ Passed 0.38 sec test 338 Start 338: plm-bsp-mi-c-stats 338: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 338: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 338: Test timeout computed to be: 1500 -303: Not an error -267/578 Test #303: plm-reg-itk-demons-stats-2 ............ Passed 0.66 sec +312: RETVAL: 0 +312: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +312: +312: STDERR: +312: Not an error +335: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +335: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt +335: EXPECTED_ERRNO is +266/578 Test #312: plm-bsp-mse-c-stats ................... Passed 0.33 sec test 341 Start 341: plm-bsp-mi-c-2-stats @@ -13759,466 +13796,403 @@ 338: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 338: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha 338: EXPECTED_ERRNO is -312: RETVAL: 0 -312: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -312: -312: STDERR: -312: Not an error -268/578 Test #312: plm-bsp-mse-c-stats ................... Passed 0.62 sec +562: RETVAL: 0 +562: STDOUT: +562: [PLAN] +562: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha +562: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha +562: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha +562: debug : 0 +562: dose norm : 100 +562: +562: [SETTINGS] +562: flavor: d ** +562: homo_approx: n ** +562: ray_step: 1 ** +562: aperture_out: ** +562: proj_dose_out: ** +562: proj_img_out: ** +562: range_comp_out: ** +562: sigma_out: ** +562: wed_out: ** +562: beam_weight: 1 ** +562: +562: [GEOMETRY & APERTURE] +562: source: 0 -2000 0 ** +562: isocenter: 0 0 0 ** +562: vup: 0 0 1 ** +562: offset: 1500 ** +562: ap_center in pixels: 20 20 ** +562: i_res: 41 41 ** +562: spacing: 3.75 3.75 ** +562: source_size: 0 ** +562: ap_file_in: ** +562: rc_file_in: ** +562: smearing: 5 ** +562: +562: [PEAK] +562: E0: P0 +562: spread: P0 +562: weight: P0 +562: +562: Start dose calculation Beam 1 +562: Plan_calc::compute_beam_dose(beam) entry -- +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: Priority 5. Target detected. +562: Computing beam modifiers for passive target +562: Compute target wepl_min_max... +562: Apply lateral smearing to the target... +562: Smearing = 5.000000, Smearing_ap = 3.750000 +562: Strel size = (1,1), (3,3) +562: 0 1 0 +562: 1 1 1 +562: 0 1 0 +562: Apply proximal and distal ... +562: Compute max wed... +562: Compute the aperture... +562: Compute range compensator... +562: Max wed in the target is 117.554 mm. +562: Min wed in the target is 88.5526 mm. +562: ires = 41 41 +562: proj_vol dim = 41 41 302 +562: prescription min/max: 88.5526 mm, 117.554 mm. +562: +562: 22 Mono-energetic BP used: +562: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 +562: Adding peak to sobp (130.000000, 1.000000, 0.895612) [0.010000, 140.000000] +562: Adding peak to sobp (129.000000, 1.000000, 0.143334) [0.010000, 140.000000] +562: Adding peak to sobp (128.000000, 1.000000, 0.216499) [0.010000, 140.000000] +562: Adding peak to sobp (127.000000, 1.000000, 0.160917) [0.010000, 140.000000] +562: Adding peak to sobp (126.000000, 1.000000, 0.140926) [0.010000, 140.000000] +562: Adding peak to sobp (125.000000, 1.000000, 0.124814) [0.010000, 140.000000] +562: Adding peak to sobp (124.000000, 1.000000, 0.113261) [0.010000, 140.000000] +562: Adding peak to sobp (123.000000, 1.000000, 0.102876) [0.010000, 140.000000] +562: Adding peak to sobp (122.000000, 1.000000, 0.096644) [0.010000, 140.000000] +562: Adding peak to sobp (121.000000, 1.000000, 0.089393) [0.010000, 140.000000] +562: Adding peak to sobp (120.000000, 1.000000, 0.083935) [0.010000, 140.000000] +562: Adding peak to sobp (119.000000, 1.000000, 0.078956) [0.010000, 140.000000] +562: Adding peak to sobp (118.000000, 1.000000, 0.074957) [0.010000, 140.000000] +562: Adding peak to sobp (117.000000, 1.000000, 0.071067) [0.010000, 140.000000] +562: Adding peak to sobp (116.000000, 1.000000, 0.067803) [0.010000, 140.000000] +562: Adding peak to sobp (115.000000, 1.000000, 0.064859) [0.010000, 140.000000] +562: Adding peak to sobp (114.000000, 1.000000, 0.062045) [0.010000, 140.000000] +562: Adding peak to sobp (113.000000, 1.000000, 0.059730) [0.010000, 140.000000] +562: Adding peak to sobp (112.000000, 1.000000, 0.057228) [0.010000, 140.000000] +562: Adding peak to sobp (111.000000, 1.000000, 0.056709) [0.010000, 140.000000] +562: Adding peak to sobp (110.000000, 1.000000, 0.045556) [0.010000, 140.000000] +562: Adding peak to sobp (109.000000, 1.000000, 0.079095) [0.010000, 140.000000] +562: **** (1) +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.87445 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000474397 mm. +562: Global sigma computed - Global sigma_max = 2.87445 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.86823 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000479245 mm. +562: Global sigma computed - Global sigma_max = 2.86823 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.81247 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000485151 mm. +562: Global sigma computed - Global sigma_max = 2.81247 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.80639 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000490292 mm. +562: Global sigma computed - Global sigma_max = 2.80639 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.74919 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000495583 mm. +562: Global sigma computed - Global sigma_max = 2.74919 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.69289 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000501994 mm. +562: Global sigma computed - Global sigma_max = 2.69289 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.68596 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000506613 mm. +562: Global sigma computed - Global sigma_max = 2.68596 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.62886 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000512341 mm. +562: Global sigma computed - Global sigma_max = 2.62886 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.57127 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000517222 mm. +562: Global sigma computed - Global sigma_max = 2.57127 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.56307 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000523251 mm. +562: Global sigma computed - Global sigma_max = 2.56307 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.50537 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000528418 mm. +562: Global sigma computed - Global sigma_max = 2.50537 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.49685 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000534772 mm. +562: Global sigma computed - Global sigma_max = 2.49685 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.4384 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000540249 mm. +562: Global sigma computed - Global sigma_max = 2.4384 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.42949 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000546957 mm. +562: Global sigma computed - Global sigma_max = 2.42949 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.37035 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000552773 mm. +562: Global sigma computed - Global sigma_max = 2.37035 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.36098 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000559867 mm. +562: Global sigma computed - Global sigma_max = 2.36098 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.30119 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000566053 mm. +562: Global sigma computed - Global sigma_max = 2.30119 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.29132 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000573569 mm. +562: Global sigma computed - Global sigma_max = 2.29132 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.23096 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000580162 mm. +562: Global sigma computed - Global sigma_max = 2.23096 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.22053 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000588138 mm. +562: Global sigma computed - Global sigma_max = 2.22053 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.15969 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000595178 mm. +562: Global sigma computed - Global sigma_max = 2.15969 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: sigma_img: 41 41 302 +562: dim: 41 41 302 +562: Sigma patient computed - sigma_pt_max = 2.14863 mm. +562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +562: Sigma range compensator computed - sigma_rc_max = 0.000603663 mm. +562: Global sigma computed - Global sigma_max = 2.14863 mm. +562: Setting RVRTS = 1 +562: FPD = 347.500001, BPD = 649.116731 +562: 41 41 302 +562: Raw dose at the maximum (0, 5, 0) : 10.689 A.U. +562: Dose normalized at the maximum to 1 x 100%. +562: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm +562: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha +562: Sigma: 0.237282 seconds +562: Calc: 3.569329 seconds +562: IO: 0.073373 seconds +562: Reformat: 0.026476 seconds +562: Misc: 0.022670 seconds +562: done. +562: +562: Total execution time : 3.929496 seconds. +562: +562: STDERR: +562: Not an error +341: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +341: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha +341: EXPECTED_ERRNO is +267/578 Test #562: proton-dose-4d ........................ Passed 4.30 sec test 344 Start 344: plm-bsp-mi-k-stats 344: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 344: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 344: Test timeout computed to be: 1500 -341: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -341: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha -341: EXPECTED_ERRNO is -321: RETVAL: 0 -321: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -321: -321: STDERR: -321: Not an error -327: RETVAL: 0 -327: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -327: -327: STDERR: -269/578 Test #321: plm-bsp-mse-i-stats ................... Passed 0.47 sec +344: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +344: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha +344: EXPECTED_ERRNO is +315: RETVAL: 0 +315: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +315: +315: STDERR: +315: Not an error +268/578 Test #315: plm-bsp-mse-g-stats ................... Passed 0.40 sec test 347 Start 347: plm-bsp-gm-k-stats 347: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 347: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 347: Test timeout computed to be: 1500 -327: Not an error -270/578 Test #327: plm-bsp-mse-l-stats ................... Passed 0.42 sec +318: RETVAL: 0 +318: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +318: +318: STDERR: +318: Not an error +269/578 Test #318: plm-bsp-mse-h-stats ................... Passed 0.41 sec test 349 Start 349: plm-bsp-sm-multi-a 349: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-sm-multi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 349: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 349: Test timeout computed to be: 1500 -347: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -347: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha -347: EXPECTED_ERRNO is -349: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -349: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt -349: EXPECTED_ERRNO is -344: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -344: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha -344: EXPECTED_ERRNO is -329: RETVAL: 0 -329: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -329: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -329: Launching registration worker thread -329: Inside registration worker thread -329: Doing registration stage -329: [1] xf_in->m_type = 0, xf_out->m_type = 0 -329: RESAMPLE 1 1: (2 2 2), (2 2 2) -329: RESAMPLE 1 1: (2 2 2), (2 2 2) -329: volume_calc_grad complete. -329: bspline_xform_initialize -329: rdims = (2,2,2) -329: vox_per_rgn = (11,11,11) -329: cdims = (5 5 5) -329: Algorithm flavor = o -329: Threading = 0 -329: >> Checking JH allocation -329: BSPLINE PARMS -329: max_its = 5 -329: max_feval = 5 -329: BSPLINE XFORM HEADER -329: vox_per_rgn = 11 11 11 -329: roi_offset = 0 0 0 -329: roi_dim = 19 19 19 -329: img_dc = 1 0 0 0 1 0 0 0 1 -329: BST METRICS -329: MET 110100 MSE 1.000000 -329: Setting nmax, mmax = 375 21 -329: >>> START -329: This problem is unconstrained. -329: [ 0, 0] MSE 18756.248 NV 6859 GM -2992.626 GN 812 [ 0.005 s ] -329: CMIN 0.00 CAVG 0.00 CMAX 0.00 -329: LSD 0.00 -329: [ 0, 1] MSE 17839.281 NV 6859 GM -3669.916 GN 971 [ 0.005 s ] -329: CMIN -0.06 CAVG 0.01 CMAX 0.67 -329: LSD 1.00 -329: [ 0, 2] MSE 14291.201 NV 6844 GM -3069.703 GN 827 [ 0.005 s ] -329: CMIN -0.32 CAVG 0.05 CMAX 3.36 -329: LSD 5.00 -329: [ 0, 3] MSE 3942.469 NV 6280 GM -1514.267 GN 474 [ 0.007 s ] -329: CMIN -1.35 CAVG 0.21 CMAX 14.12 -329: LSD 21.00 -329: [ 1, 4] MSE 6518.217 NV 5156 GM 1242.011 GN 628 [ 0.007 s ] -329: CMIN -2.29 CAVG 0.47 CMAX 37.57 -329: LSD 35.84 -329: [ 1, 5] MSE 347.073 NV 5829 GM -219.984 GN 76.6 [ 0.006 s ] -329: CMIN -1.44 CAVG 0.32 CMAX 24.31 -329: LSD 15.58 -329: [2] xf_out->m_type = 9, xf_in->m_type = 0 -329: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -329: bspline_xform_initialize -329: rdims = (2,2,2) -329: vox_per_rgn = (22,22,22) -329: cdims = (5 5 5) -329: ** Registration worker thread finished. -329: Writing transformation ... -329: Warping... -329: Running: plm_warp_native -329: Converting input image... -329: Converting xform... -329: bspline_xform_initialize -329: rdims = (2,2,2) -329: vox_per_rgn = (22,22,22) -329: cdims = (5 5 5) -329: Creating output vf... -329: Creating output volume... -329: Running native warper... -329: bspline_warp complete. -329: Back convert to original type... -329: > Convert vf to itk -329: > Conversion complete. -329: plm_warp_native is complete. -329: Saving image... -329: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha -329: Saving vf... -329: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-vf.mha -329: Load: 0.0991039 -329: Run: 0.050056 -329: Save: 0.058064 -329: Total: 0.207224 -329: Finished! -329: -329: STDERR: -329: Not an error -271/578 Test #329: plm-bsp-mse-o ......................... Passed 0.56 sec +324: RETVAL: 0 +324: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +324: +324: STDERR: +324: Not an error +270/578 Test #324: plm-bsp-mse-k-stats ................... Passed 0.41 sec test 352 Start 352: plm-bsp-openmp-stats 352: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-openmp-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 352: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 352: Test timeout computed to be: 1500 -352: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -352: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha -352: EXPECTED_ERRNO is -568: RETVAL: 0 -568: STDOUT: -568: [PLAN] -568: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha -568: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha -568: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha -568: debug : 0 -568: dose norm : 100 -568: -568: [SETTINGS] -568: flavor: d ** -568: homo_approx: n ** -568: ray_step: 1 ** -568: aperture_out: ** -568: proj_dose_out: ** -568: proj_img_out: ** -568: range_comp_out: ** -568: sigma_out: ** -568: wed_out: ** -568: beam_weight: 1 ** -568: -568: [GEOMETRY & APERTURE] -568: source: 0 -2000 0 ** -568: isocenter: 0 0 0 ** -568: vup: 0 0 1 ** -568: offset: 1500 ** -568: ap_center in pixels: 20 20 ** -568: i_res: 41 41 ** -568: spacing: 3.75 3.75 ** -568: source_size: 0 ** -568: ap_file_in: ** -568: rc_file_in: ** -568: smearing: 5 ** -568: -568: [PEAK] -568: E0: P0 -568: spread: P0 -568: weight: P0 -568: -568: Start dose calculation Beam 1 -568: Plan_calc::compute_beam_dose(beam) entry -- -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: Priority 5. Target detected. -568: Compute target wepl_min_max... -568: Apply lateral smearing to the target... -568: Smearing = 5.000000, Smearing_ap = 3.750000 -568: Strel size = (1,1), (3,3) -568: 0 1 0 -568: 1 1 1 -568: 0 1 0 -568: Apply proximal and distal ... -568: Compute max wed... -568: Compute the aperture... -568: Max wed in the target is 117.554 mm. -568: Min wed in the target is 88.5523 mm. -568: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. -568: Min and max energies for treating the PTV: 109 MeV and 130 MeV. -568: -568: 22 Mono-energetic BP used: -568: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 -568: Optimization of the particle number map for any mono-energetic slice in progress... -568: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.87445 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.87445 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.86823 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.86823 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.81247 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.81247 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.80639 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.80639 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.74919 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.74919 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.69289 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.69289 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.68596 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.68596 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.62886 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.62886 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.57127 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.57127 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.56307 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.56307 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.50537 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.50537 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.49685 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.49685 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.4384 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.4384 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.42949 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.42949 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.37035 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.37035 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.36098 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.36098 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.30119 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.30119 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.29132 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.29132 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.23096 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.23096 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.22053 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.22053 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.15969 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.15969 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: sigma_img: 41 41 302 -568: dim: 41 41 302 -568: Sigma patient computed - sigma_pt_max = 2.14863 mm. -568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -568: Sigma range compensator computed - sigma_rc_max = 0 mm. -568: Global sigma computed - Global sigma_max = 2.14863 mm. -568: Setting RVRTS = 1 -568: FPD = 347.500001, BPD = 649.116731 -568: 41 41 302 -568: Raw dose at the maximum (0, 5, 0) : 10.689 A.U. -568: Dose normalized at the maximum to 1 x 100%. -568: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm -568: Trying to write mebs in /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-pn.txt -568: Ap 41 41 -568: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha -568: Sigma: 0.401744 seconds -568: Calc: 5.424487 seconds -568: IO: 0.169268 seconds -568: Reformat: 0.048943 seconds -568: Misc: 0.038905 seconds -568: done. -568: -568: Total execution time : 6.084324 seconds. -568: -568: STDERR: -568: Not an error -272/578 Test #568: proton-dose-5d ........................ Passed 6.52 sec +347: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +347: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha +347: EXPECTED_ERRNO is +321: RETVAL: 0 +321: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +321: +321: STDERR: +321: Not an error +349: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +349: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt +349: EXPECTED_ERRNO is +271/578 Test #321: plm-bsp-mse-i-stats ................... Passed 0.45 sec test 354 Start 354: plm-bsp-resume 354: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 354: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 354: Test timeout computed to be: 1500 +352: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +352: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha +352: EXPECTED_ERRNO is +354: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +354: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt +354: EXPECTED_ERRNO is +327: RETVAL: 0 +327: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +327: +327: STDERR: +327: Not an error +272/578 Test #327: plm-bsp-mse-l-stats ................... Passed 0.60 sec +test 356 + Start 356: plm-bsp-logfile + +356: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-logfile" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +356: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +356: Test timeout computed to be: 1500 333: RETVAL: 0 333: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 333: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -14249,22 +14223,22 @@ 333: Setting nmax, mmax = 375 21 333: >>> START 333: This problem is unconstrained. -333: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.007 s ] +333: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.015 s ] 333: CMIN 0.00 CAVG 0.00 CMAX 0.00 333: LSD 0.00 333: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.007 s ] 333: CMIN -0.05 CAVG 0.01 CMAX 0.68 333: LSD 1.00 -333: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.008 s ] +333: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.006 s ] 333: CMIN -0.27 CAVG 0.05 CMAX 3.40 333: LSD 5.00 -333: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.010 s ] +333: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.016 s ] 333: CMIN -2.31 CAVG 0.43 CMAX 26.12 333: LSD 35.51 -333: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.004 s ] +333: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.012 s ] 333: CMIN -2.36 CAVG 0.35 CMAX 22.13 333: LSD 6.00 -333: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.011 s ] +333: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.008 s ] 333: CMIN -2.20 CAVG 0.36 CMAX 21.85 333: LSD 1.43 333: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -14295,57 +14269,166 @@ 333: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha 333: Saving vf... 333: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-vf.mha -333: Load: 0.0778549 -333: Run: 0.072247 -333: Save: 0.092989 -333: Total: 0.243091 +333: Load: 0.0571921 +333: Run: 0.0799959 +333: Save: 0.0868402 +333: Total: 0.224028 333: Finished! 333: 333: STDERR: 333: Not an error -273/578 Test #333: plm-bsp-mse-q ......................... Passed 0.58 sec -test 356 - Start 356: plm-bsp-logfile - -356: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-logfile" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -356: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -356: Test timeout computed to be: 1500 -354: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -354: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt -354: EXPECTED_ERRNO is -324: RETVAL: 0 -324: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -324: -324: STDERR: -324: Not an error -356: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -356: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt -356: EXPECTED_ERRNO is -274/578 Test #324: plm-bsp-mse-k-stats ................... Passed 0.74 sec +273/578 Test #333: plm-bsp-mse-q ......................... Passed 0.56 sec test 359 Start 359: plm-bsp-ushort-stats 359: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-ushort-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 359: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 359: Test timeout computed to be: 1500 -359: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -359: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha -359: EXPECTED_ERRNO is -338: RETVAL: 0 -338: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872 -338: -338: STDERR: -338: Not an error -275/578 Test #338: plm-bsp-mi-c-stats .................... Passed 0.45 sec +356: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +356: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt +356: EXPECTED_ERRNO is +344: RETVAL: 0 +344: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872 +344: +344: STDERR: +344: Not an error +274/578 Test #344: plm-bsp-mi-k-stats .................... Passed 0.45 sec test 362 Start 362: plm-bsp-double-stats 362: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-double-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 362: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 362: Test timeout computed to be: 1500 +329: RETVAL: 0 +329: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +329: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +329: Launching registration worker thread +329: Inside registration worker thread +329: Doing registration stage +329: [1] xf_in->m_type = 0, xf_out->m_type = 0 +329: RESAMPLE 1 1: (2 2 2), (2 2 2) +329: RESAMPLE 1 1: (2 2 2), (2 2 2) +329: volume_calc_grad complete. +329: bspline_xform_initialize +329: rdims = (2,2,2) +329: vox_per_rgn = (11,11,11) +329: cdims = (5 5 5) +329: Algorithm flavor = o +329: Threading = 0 +329: >> Checking JH allocation +329: BSPLINE PARMS +329: max_its = 5 +329: max_feval = 5 +329: BSPLINE XFORM HEADER +329: vox_per_rgn = 11 11 11 +329: roi_offset = 0 0 0 +329: roi_dim = 19 19 19 +329: img_dc = 1 0 0 0 1 0 0 0 1 +329: BST METRICS +329: MET 110100 MSE 1.000000 +329: Setting nmax, mmax = 375 21 +329: >>> START +329: This problem is unconstrained. +329: [ 0, 0] MSE 18756.248 NV 6859 GM -2992.626 GN 812 [ 0.006 s ] +329: CMIN 0.00 CAVG 0.00 CMAX 0.00 +329: LSD 0.00 +329: [ 0, 1] MSE 17839.281 NV 6859 GM -3669.916 GN 971 [ 0.004 s ] +329: CMIN -0.06 CAVG 0.01 CMAX 0.67 +329: LSD 1.00 +329: [ 0, 2] MSE 14291.201 NV 6844 GM -3069.703 GN 827 [ 0.006 s ] +329: CMIN -0.32 CAVG 0.05 CMAX 3.36 +329: LSD 5.00 +329: [ 0, 3] MSE 3942.469 NV 6280 GM -1514.267 GN 474 [ 0.004 s ] +329: CMIN -1.35 CAVG 0.21 CMAX 14.12 +329: LSD 21.00 +329: [ 1, 4] MSE 6518.217 NV 5156 GM 1242.011 GN 628 [ 0.003 s ] +329: CMIN -2.29 CAVG 0.47 CMAX 37.57 +329: LSD 35.84 +329: [ 1, 5] MSE 347.073 NV 5829 GM -219.984 GN 76.6 [ 0.003 s ] +329: CMIN -1.44 CAVG 0.32 CMAX 24.31 +329: LSD 15.58 +329: [2] xf_out->m_type = 9, xf_in->m_type = 0 +329: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +329: bspline_xform_initialize +329: rdims = (2,2,2) +329: vox_per_rgn = (22,22,22) +329: cdims = (5 5 5) +329: ** Registration worker thread finished. +329: Writing transformation ... +329: Warping... +329: Running: plm_warp_native +329: Converting input image... +329: Converting xform... +329: bspline_xform_initialize +329: rdims = (2,2,2) +329: vox_per_rgn = (22,22,22) +329: cdims = (5 5 5) +329: Creating output vf... +329: Creating output volume... +329: Running native warper... +329: bspline_warp complete. +329: Back convert to original type... +329: > Convert vf to itk +329: > Conversion complete. +329: plm_warp_native is complete. +329: Saving image... +329: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha +329: Saving vf... +329: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-vf.mha +329: Load: 0.066143 +329: Run: 0.0694141 +329: Save: 0.116869 +329: Total: 0.252426 +329: Finished! +329: +329: STDERR: +329: Not an error +359: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +359: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha +359: EXPECTED_ERRNO is +275/578 Test #329: plm-bsp-mse-o ......................... Passed 0.76 sec +test 366 + Start 366: plm-bsp-char-output-stats + +366: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +366: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +366: Test timeout computed to be: 1500 362: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 362: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha 362: EXPECTED_ERRNO is +341: RETVAL: 0 +341: STDOUT: MIN -991.894104 AVE -128.919357 MAX 0.000000 NONZERO 48385 NUMVOX 54872 +341: +341: STDERR: +341: Not an error +276/578 Test #341: plm-bsp-mi-c-2-stats .................. Passed 0.59 sec +test 368 + Start 368: plm-bsp-rect + +368: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-rect" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +368: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +368: Test timeout computed to be: 1500 +338: RETVAL: 0 +338: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872 +338: +338: STDERR: +338: Not an error +277/578 Test #338: plm-bsp-mi-c-stats .................... Passed 0.64 sec +test 370 + Start 370: plm-bsp-regularize-none-stats + +370: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +370: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +370: Test timeout computed to be: 1500 +366: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +366: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha +366: EXPECTED_ERRNO is +368: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +368: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt +368: EXPECTED_ERRNO is +370: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +370: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha +370: EXPECTED_ERRNO is 305: RETVAL: 0 305: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 305: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -14354,11 +14437,11 @@ 305: Doing registration stage 305: [1] xf_in->m_type = 0, xf_out->m_type = 0 305: Ready to start registration. -305: MSE [ 0] 18945.891 [ 0.161 secs] -305: MSE [ 1] 9795.787 [ 0.140 secs] -305: MSE [ 2] 3911.273 [ 0.121 secs] -305: MSE [ 3] 1186.045 [ 0.148 secs] -305: MSE [ 4] 314.763 [ 0.159 secs] +305: MSE [ 0] 18945.891 [ 0.121 secs] +305: MSE [ 1] 9795.787 [ 0.103 secs] +305: MSE [ 2] 3911.273 [ 0.128 secs] +305: MSE [ 3] 1186.045 [ 0.143 secs] +305: MSE [ 4] 314.763 [ 0.139 secs] 305: Done with registration. Writing output... 305: Deformation stats (out) 305: VF_MAX = 102.433 VF_AVG = 31.2783 @@ -14372,26 +14455,54 @@ 305: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff-img.mha 305: Saving vf... 305: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff-vf.mha -305: Load: 0.135431 -305: Run: 0.739903 -305: Save: 0.0149331 -305: Total: 0.890267 +305: Load: 0.0555749 +305: Run: 0.637264 +305: Save: 0.0249491 +305: Total: 0.717788 305: Finished! 305: 305: STDERR: 305: Not an error -276/578 Test #305: plm-reg-itk-demons-diff ............... Passed 1.43 sec -test 366 - Start 366: plm-bsp-char-output-stats +307: RETVAL: 0 +307: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +307: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +307: Launching registration worker thread +307: Inside registration worker thread +307: Doing registration stage +307: [1] xf_in->m_type = 0, xf_out->m_type = 0 +307: Ready to start registration. +307: MSE [ 0] 18945.891 [ 0.089 secs] +307: MSE [ 1] 9788.487 [ 0.097 secs] +307: MSE [ 2] 4038.212 [ 0.095 secs] +307: MSE [ 3] 1283.245 [ 0.176 secs] +307: MSE [ 4] 392.878 [ 0.155 secs] +307: Done with registration. Writing output... +307: Deformation stats (out) +307: VF_MAX = 112.668 VF_AVG = 32.7138 +307: [2] xf_out->m_type = 8, xf_in->m_type = 0 +307: ** Registration worker thread finished. +307: Warping... +307: plm_warp_itk: xform_to_itk_vf +307: plm_warp_itk: convert_to_itk +307: plm_warp_itk: warping... +307: Saving image... +307: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-img.mha +307: Saving vf... +307: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-vf.mha +307: Load: 0.0597601 +307: Run: 0.635221 +307: Save: 0.019675 +307: Total: 0.714656 +307: Finished! +307: +307: STDERR: +278/578 Test #305: plm-reg-itk-demons-diff ............... Passed 1.09 sec +test 373 + Start 373: plm-bsp-regularize-analytic-stats -366: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -366: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -366: Test timeout computed to be: 1500 -341: RETVAL: 0 -341: STDOUT: MIN -991.894104 AVE -128.919357 MAX 0.000000 NONZERO 48385 NUMVOX 54872 -341: -341: STDERR: -341: Not an error +373: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +373: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +373: Test timeout computed to be: 1500 331: RETVAL: 0 331: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 331: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -14422,22 +14533,22 @@ 331: Setting nmax, mmax = 375 21 331: >>> START 331: This problem is unconstrained. -331: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.042 s ] +331: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.048 s ] 331: CMIN 0.00 CAVG 0.00 CMAX 0.00 331: LSD 0.00 -331: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.052 s ] +331: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.031 s ] 331: CMIN -0.05 CAVG 0.01 CMAX 0.68 331: LSD 1.00 -331: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.031 s ] +331: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.036 s ] 331: CMIN -0.27 CAVG 0.05 CMAX 3.40 331: LSD 5.00 -331: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.035 s ] +331: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.043 s ] 331: CMIN -2.31 CAVG 0.43 CMAX 26.12 331: LSD 35.51 -331: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.041 s ] +331: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.032 s ] 331: CMIN -2.36 CAVG 0.35 CMAX 22.13 331: LSD 6.00 -331: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.027 s ] +331: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.056 s ] 331: CMIN -2.20 CAVG 0.36 CMAX 21.85 331: LSD 1.43 331: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -14468,31 +14579,47 @@ 331: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha 331: Saving vf... 331: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-vf.mha -331: Load: 0.119769 -331: Run: 0.269736 -331: Save: 0.0760951 -331: Total: 0.4656 +331: Load: 0.101603 +331: Run: 0.299796 +331: Save: 0.108444 +331: Total: 0.509843 331: Finished! 331: 331: STDERR: +307: Not an error +279/578 Test #307: plm-reg-itk-demons-logd ............... Passed 1.10 sec +test 376 + Start 376: plm-bsp-regularize-numeric-stats + +376: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-numeric-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +376: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +376: Test timeout computed to be: 1500 331: Not an error -366: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -366: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha -366: EXPECTED_ERRNO is -277/578 Test #331: plm-bsp-mse-p ......................... Passed 1.09 sec -test 368 - Start 368: plm-bsp-rect +280/578 Test #331: plm-bsp-mse-p ......................... Passed 0.88 sec +test 380 + Start 380: plm-bsp-landmark-b-stats -368: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-rect" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -368: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -368: Test timeout computed to be: 1500 -278/578 Test #341: plm-bsp-mi-c-2-stats .................. Passed 0.84 sec -test 370 - Start 370: plm-bsp-regularize-none-stats +380: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +380: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +380: Test timeout computed to be: 1500 +373: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +373: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha +373: EXPECTED_ERRNO is +376: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +376: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha +376: EXPECTED_ERRNO is +347: RETVAL: 0 +347: STDOUT: MIN -997.631409 AVE -121.961853 MAX 0.000000 NONZERO 49452 NUMVOX 54872 +347: +347: STDERR: +347: Not an error +281/578 Test #347: plm-bsp-gm-k-stats .................... Passed 0.68 sec +test 383 + Start 383: plm-bsp-landmark-c-stats -370: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -370: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -370: Test timeout computed to be: 1500 +383: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +383: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +383: Test timeout computed to be: 1500 335: RETVAL: 0 335: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 335: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -14523,22 +14650,22 @@ 335: Setting nmax, mmax = 375 21 335: >>> START 335: This problem is unconstrained. -335: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.057 s ] +335: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.052 s ] 335: CMIN 0.00 CAVG 0.00 CMAX 0.00 335: LSD 0.00 -335: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.024 s ] +335: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.026 s ] 335: CMIN -0.05 CAVG 0.01 CMAX 0.68 335: LSD 1.00 -335: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.047 s ] +335: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.037 s ] 335: CMIN -0.27 CAVG 0.05 CMAX 3.40 335: LSD 5.00 -335: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.044 s ] +335: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.021 s ] 335: CMIN -2.31 CAVG 0.43 CMAX 26.12 335: LSD 35.51 -335: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.032 s ] +335: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.017 s ] 335: CMIN -2.36 CAVG 0.35 CMAX 22.13 335: LSD 6.00 -335: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.044 s ] +335: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.031 s ] 335: CMIN -2.20 CAVG 0.36 CMAX 21.85 335: LSD 1.43 335: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -14569,178 +14696,72 @@ 335: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha 335: Saving vf... 335: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-vf.mha -335: Load: 0.100695 -335: Run: 0.283836 -335: Save: 0.0636401 -335: Total: 0.448171 +335: Load: 0.208086 +335: Run: 0.205269 +335: Save: 0.0727139 +335: Total: 0.486069 335: Finished! 335: 335: STDERR: 335: Not an error -279/578 Test #335: plm-bsp-mse-r ......................... Passed 0.92 sec -test 373 - Start 373: plm-bsp-regularize-analytic-stats - -373: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -373: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -373: Test timeout computed to be: 1500 -347: RETVAL: 0 -347: STDOUT: MIN -997.631409 AVE -121.961853 MAX 0.000000 NONZERO 49452 NUMVOX 54872 -347: -347: STDERR: -347: Not an error -280/578 Test #347: plm-bsp-gm-k-stats .................... Passed 0.78 sec -test 376 - Start 376: plm-bsp-regularize-numeric-stats - -376: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-numeric-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -376: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -376: Test timeout computed to be: 1500 -368: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -368: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt -368: EXPECTED_ERRNO is -370: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -370: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha -370: EXPECTED_ERRNO is -373: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -373: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha -373: EXPECTED_ERRNO is -307: RETVAL: 0 -307: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -307: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -307: Launching registration worker thread -307: Inside registration worker thread -307: Doing registration stage -307: [1] xf_in->m_type = 0, xf_out->m_type = 0 -307: Ready to start registration. -307: MSE [ 0] 18945.891 [ 0.139 secs] -307: MSE [ 1] 9788.487 [ 0.143 secs] -307: MSE [ 2] 4038.212 [ 0.162 secs] -307: MSE [ 3] 1283.245 [ 0.177 secs] -307: MSE [ 4] 392.878 [ 0.216 secs] -307: Done with registration. Writing output... -307: Deformation stats (out) -307: VF_MAX = 112.668 VF_AVG = 32.7138 -307: [2] xf_out->m_type = 8, xf_in->m_type = 0 -307: ** Registration worker thread finished. -307: Warping... -307: plm_warp_itk: xform_to_itk_vf -307: plm_warp_itk: convert_to_itk -307: plm_warp_itk: warping... -307: Saving image... -307: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-img.mha -307: Saving vf... -307: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-vf.mha -307: Load: 0.0888159 -307: Run: 0.854699 -307: Save: 0.0166299 -307: Total: 0.960145 -307: Finished! -307: -307: STDERR: -307: Not an error -281/578 Test #307: plm-reg-itk-demons-logd ............... Passed 1.53 sec -test 380 - Start 380: plm-bsp-landmark-b-stats - -380: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -380: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -380: Test timeout computed to be: 1500 -344: RETVAL: 0 -344: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872 -344: -344: STDERR: -344: Not an error -376: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -376: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha -376: EXPECTED_ERRNO is -282/578 Test #344: plm-bsp-mi-k-stats .................... Passed 0.86 sec -test 383 - Start 383: plm-bsp-landmark-c-stats - -383: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -383: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -383: Test timeout computed to be: 1500 380: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 380: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha 380: EXPECTED_ERRNO is +282/578 Test #335: plm-bsp-mse-r ......................... Passed 0.84 sec +test 386 + Start 386: plm-bsp-landmark-d-stats + +386: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +386: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +386: Test timeout computed to be: 1500 383: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 383: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha 383: EXPECTED_ERRNO is +386: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +386: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha +386: EXPECTED_ERRNO is 352: RETVAL: 0 352: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 352: 352: STDERR: 352: Not an error 283/578 Test #352: plm-bsp-openmp-stats .................. Passed 0.72 sec -test 386 - Start 386: plm-bsp-landmark-d-stats - -386: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -386: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -386: Test timeout computed to be: 1500 -359: RETVAL: 0 -359: STDOUT: MIN 0.000000 AVE 107.313034 MAX 997.000000 NONZERO 44294 NUMVOX 54872 -359: -359: STDERR: -359: Not an error -284/578 Test #359: plm-bsp-ushort-stats .................. Passed 0.65 sec test 389 Start 389: plm-bsp-landmark-e-stats 389: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 389: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 389: Test timeout computed to be: 1500 -309: RETVAL: 0 -309: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -309: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -309: Launching registration worker thread -309: Inside registration worker thread -309: Doing registration stage -309: [1] xf_in->m_type = 0, xf_out->m_type = 0 -309: Ready to start registration. -309: MSE [ 0] 18945.891 [ 0.102 secs] -309: MSE [ 1] 9778.825 [ 0.185 secs] -309: MSE [ 2] 3980.165 [ 0.229 secs] -309: MSE [ 3] 1233.515 [ 0.298 secs] -309: MSE [ 4] 374.936 [ 0.320 secs] -309: Done with registration. Writing output... -309: Deformation stats (out) -309: VF_MAX = 109.365 VF_AVG = 31.9237 -309: [2] xf_out->m_type = 8, xf_in->m_type = 0 -309: ** Registration worker thread finished. -309: Warping... -309: plm_warp_itk: xform_to_itk_vf -309: plm_warp_itk: convert_to_itk -309: plm_warp_itk: warping... -309: Saving image... -309: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-img.mha -309: Saving vf... -309: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-vf.mha -309: Load: 0.126233 -309: Run: 1.13742 -309: Save: 0.011874 -309: Total: 1.27553 -309: Finished! -309: -309: STDERR: -309: Not an error -386: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -386: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha -386: EXPECTED_ERRNO is -389: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -389: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha -389: EXPECTED_ERRNO is -285/578 Test #309: plm-reg-itk-demons-sym-logd ........... Passed 1.68 sec +359: RETVAL: 0 +359: STDOUT: MIN 0.000000 AVE 107.313034 MAX 997.000000 NONZERO 44294 NUMVOX 54872 +359: +359: STDERR: +359: Not an error +284/578 Test #359: plm-bsp-ushort-stats .................. Passed 0.46 sec test 392 Start 392: plm-bsp-dcos-a-stats 392: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 392: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 392: Test timeout computed to be: 1500 +389: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +389: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha +389: EXPECTED_ERRNO is 392: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 392: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd 392: EXPECTED_ERRNO is +366: RETVAL: 0 +366: STDOUT: MIN -128.000000 AVE -127.132690 MAX 0.000000 NONZERO 54608 NUMVOX 54872 +366: +366: STDERR: +366: Not an error +285/578 Test #366: plm-bsp-char-output-stats ............. Passed 0.50 sec +test 395 + Start 395: plm-bsp-dcos-b-stats + +395: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +395: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +395: Test timeout computed to be: 1500 354: RETVAL: 0 354: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 354: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -14771,22 +14792,22 @@ 354: Setting nmax, mmax = 375 21 354: >>> START 354: This problem is unconstrained. -354: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.005 s ] +354: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.004 s ] 354: CMIN 0.00 CAVG 0.00 CMAX 0.00 354: LSD 0.00 -354: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.009 s ] +354: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.007 s ] 354: CMIN -0.07 CAVG 0.01 CMAX 0.68 354: LSD 1.00 -354: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.005 s ] +354: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.004 s ] 354: CMIN -0.35 CAVG 0.05 CMAX 3.40 354: LSD 5.00 354: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.004 s ] 354: CMIN -1.48 CAVG 0.20 CMAX 14.26 354: LSD 21.00 -354: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.004 s ] +354: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.003 s ] 354: CMIN -1.74 CAVG 0.44 CMAX 32.50 354: LSD 27.95 -354: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.005 s ] +354: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.003 s ] 354: CMIN -1.73 CAVG 0.34 CMAX 23.99 354: LSD 13.11 354: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -14818,19 +14839,19 @@ 354: [ 0, 0] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.004 s ] 354: CMIN -1.73 CAVG 0.34 CMAX 23.99 354: LSD 0.00 -354: [ 0, 1] MSE 245.572 NV 5873 GM -24.090 GN 31.6 [ 0.004 s ] +354: [ 0, 1] MSE 245.572 NV 5873 GM -24.090 GN 31.6 [ 0.003 s ] 354: CMIN -1.74 CAVG 0.33 CMAX 23.36 354: LSD 1.00 -354: [ 1, 2] MSE 184.553 NV 5937 GM -53.657 GN 19.1 [ 0.004 s ] +354: [ 1, 2] MSE 184.553 NV 5937 GM -53.657 GN 19.1 [ 0.003 s ] 354: CMIN -1.91 CAVG 0.35 CMAX 21.57 354: LSD 3.72 -354: [ 2, 3] MSE 169.679 NV 5953 GM -95.518 GN 19.6 [ 0.005 s ] +354: [ 2, 3] MSE 169.679 NV 5953 GM -95.518 GN 19.6 [ 0.003 s ] 354: CMIN -2.31 CAVG 0.35 CMAX 20.63 354: LSD 2.11 -354: [ 3, 4] MSE 160.980 NV 5975 GM -14.478 GN 20.7 [ 0.005 s ] +354: [ 3, 4] MSE 160.980 NV 5975 GM -14.478 GN 20.7 [ 0.003 s ] 354: CMIN -3.42 CAVG 0.39 CMAX 17.80 354: LSD 5.62 -354: [ 4, 5] MSE 133.675 NV 5940 GM -9.965 GN 18.9 [ 0.005 s ] +354: [ 4, 5] MSE 133.675 NV 5940 GM -9.965 GN 18.9 [ 0.009 s ] 354: CMIN -3.93 CAVG 0.41 CMAX 17.38 354: LSD 2.38 354: [2] xf_out->m_type = 9, xf_in->m_type = 9 @@ -14861,24 +14882,71 @@ 354: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha 354: Saving vf... 354: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-vf.mha -354: Load: 0.05985 -354: Run: 0.0839489 -354: Save: 0.0808792 -354: Total: 0.224678 +354: Load: 0.066133 +354: Run: 0.07815 +354: Save: 0.0792139 +354: Total: 0.223497 354: Finished! 354: 354: STDERR: 354: Not an error -286/578 Test #354: plm-bsp-resume ........................ Passed 0.81 sec -test 395 - Start 395: plm-bsp-dcos-b-stats +286/578 Test #354: plm-bsp-resume ........................ Passed 0.90 sec +test 398 + Start 398: plm-bsp-dcos-c-stats -395: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -395: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -395: Test timeout computed to be: 1500 +398: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +398: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +398: Test timeout computed to be: 1500 +309: RETVAL: 0 +309: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +309: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +309: Launching registration worker thread +309: Inside registration worker thread +309: Doing registration stage +309: [1] xf_in->m_type = 0, xf_out->m_type = 0 +309: Ready to start registration. +309: MSE [ 0] 18945.891 [ 0.142 secs] +309: MSE [ 1] 9778.825 [ 0.153 secs] +309: MSE [ 2] 3980.165 [ 0.242 secs] +309: MSE [ 3] 1233.515 [ 0.294 secs] +309: MSE [ 4] 374.936 [ 0.261 secs] +309: Done with registration. Writing output... +309: Deformation stats (out) +309: VF_MAX = 109.365 VF_AVG = 31.9237 +309: [2] xf_out->m_type = 8, xf_in->m_type = 0 +309: ** Registration worker thread finished. +309: Warping... +309: plm_warp_itk: xform_to_itk_vf +309: plm_warp_itk: convert_to_itk +309: plm_warp_itk: warping... +309: Saving image... +309: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-img.mha +309: Saving vf... +309: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-vf.mha +309: Load: 0.059422 +309: Run: 1.09872 +309: Save: 0.0168099 +309: Total: 1.17495 +309: Finished! +309: +309: STDERR: 395: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 395: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd 395: EXPECTED_ERRNO is +309: Not an error +287/578 Test #309: plm-reg-itk-demons-sym-logd ........... Passed 1.49 sec +test 401 + Start 401: plm-bsp-dcos-d-stats + +401: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +401: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +401: Test timeout computed to be: 1500 +398: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +398: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd +398: EXPECTED_ERRNO is +401: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +401: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd +401: EXPECTED_ERRNO is 349: RETVAL: 0 349: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 349: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -14919,22 +14987,22 @@ 349: Setting nmax, mmax = 375 21 349: >>> START 349: This problem is unconstrained. -349: [ 0, 0] SCORE -23.086 NV 6859 GM 11.933 GN 2.8 [ 0.027 s ] +349: [ 0, 0] SCORE -23.086 NV 6859 GM 11.933 GN 2.8 [ 0.020 s ] 349: GM 172.276 MI -0.4031359 CMIN 0.01 CAVG 0.01 CMAX 0.01 349: LSD 0.00 -349: [ 0, 1] SCORE -21.366 NV 6859 GM -20.848 GN 4.05 [ 0.028 s ] +349: [ 0, 1] SCORE -21.366 NV 6859 GM -20.848 GN 4.05 [ 0.022 s ] 349: GM 172.158 MI -0.3858200 CMIN -0.49 CAVG -0.00 CMAX 0.08 349: LSD 1.00 -349: [ 0, 2] SCORE -22.915 NV 6859 GM -12.881 GN 2.54 [ 0.031 s ] +349: [ 0, 2] SCORE -22.915 NV 6859 GM -12.881 GN 2.54 [ 0.028 s ] 349: GM 172.298 MI -0.4014443 CMIN -0.08 CAVG 0.01 CMAX 0.02 349: LSD 0.18 -349: [ 0, 3] SCORE -23.222 NV 6859 GM -1.121 GN 1.07 [ 0.031 s ] +349: [ 0, 3] SCORE -23.222 NV 6859 GM -1.121 GN 1.07 [ 0.028 s ] 349: GM 172.313 MI -0.4045370 CMIN -0.01 CAVG 0.01 CMAX 0.01 349: LSD 0.05 -349: [ 1, 4] SCORE -23.229 NV 6859 GM 16.621 GN 3.63 [ 0.059 s ] +349: [ 1, 4] SCORE -23.229 NV 6859 GM 16.621 GN 3.63 [ 0.036 s ] 349: GM 172.348 MI -0.4046354 CMIN -0.01 CAVG 0.01 CMAX 0.01 349: LSD 0.01 -349: [ 2, 5] SCORE -22.889 NV 6859 GM -16.998 GN 4.96 [ 0.035 s ] +349: [ 2, 5] SCORE -22.889 NV 6859 GM -16.998 GN 4.96 [ 0.029 s ] 349: GM 172.750 MI -0.4016393 CMIN -0.14 CAVG 0.01 CMAX 0.04 349: LSD 0.20 349: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -14965,36 +15033,70 @@ 349: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha 349: Saving vf... 349: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-vf.mha -349: Load: 0.130703 -349: Run: 0.269177 -349: Save: 0.0649168 -349: Total: 0.464797 +349: Load: 0.150805 +349: Run: 0.203296 +349: Save: 0.082021 +349: Total: 0.436122 349: Finished! 349: 349: STDERR: 349: Not an error -287/578 Test #349: plm-bsp-sm-multi-a .................... Passed 1.17 sec -test 398 - Start 398: plm-bsp-dcos-c-stats +288/578 Test #349: plm-bsp-sm-multi-a .................... Passed 1.07 sec +test 404 + Start 404: plm-bsp-dcos-e-stats -398: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -398: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -398: Test timeout computed to be: 1500 +404: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +404: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +404: Test timeout computed to be: 1500 +380: RETVAL: 0 +380: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 +380: +380: STDERR: +380: Not an error +289/578 Test #380: plm-bsp-landmark-b-stats .............. Passed 0.46 sec +test 407 + Start 407: plm-bsp-dcos-f-stats + +407: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-f-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +407: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +407: Test timeout computed to be: 1500 362: RETVAL: 0 362: STDOUT: MIN 0.000000 AVE 108.147682 MAX 998.045227 NONZERO 46833 NUMVOX 54872 362: 362: STDERR: 362: Not an error -288/578 Test #362: plm-bsp-double-stats .................. Passed 0.85 sec -test 401 - Start 401: plm-bsp-dcos-d-stats +290/578 Test #362: plm-bsp-double-stats .................. Passed 0.74 sec +test 410 + Start 410: plm-reg-multi-a-stats -401: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -401: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -401: Test timeout computed to be: 1500 -398: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -398: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd -398: EXPECTED_ERRNO is +410: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +410: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +410: Test timeout computed to be: 1500 +370: RETVAL: 0 +370: STDOUT: Min: -9.485 -9.485 -9.485 +370: Mean: -0.004 -0.004 -0.004 +370: Max: 9.819 9.819 9.819 +370: Mean abs: 0.215 0.215 0.215 +370: Ave len: 0.425 +370: Jacobian: MINJAC 0.315393 MAXJAC 1.06557 +370: Energy: MINDIL -0.958 MAXDIL 0.0701264 +370: MAXSTRAIN 0.0879 TOTSTRAIN 112.949 +370: Second derivatives: MINSECDER 0 MAXSECDER 0.0362 +370: AVESECDER 0.000354 INTSECDER 4.42e+04 +370: Max second derivative at: (20 20 16) +370: +370: STDERR: +370: Not an error +291/578 Test #370: plm-bsp-regularize-none-stats ......... Passed 0.65 sec +test 413 + Start 413: plm-reg-multi-b-stats + +413: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +413: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +413: Test timeout computed to be: 1500 +407: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +407: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd +407: EXPECTED_ERRNO is 373: RETVAL: 0 373: STDOUT: Min: -7.802 -7.802 -7.802 373: Mean: -0.007 -0.007 -0.007 @@ -15010,16 +15112,324 @@ 373: 373: STDERR: 373: Not an error -289/578 Test #373: plm-bsp-regularize-analytic-stats ..... Passed 0.51 sec -test 404 - Start 404: plm-bsp-dcos-e-stats +292/578 Test #373: plm-bsp-regularize-analytic-stats ..... Passed 0.56 sec +test 416 + Start 416: plm-reg-dv-itk-translation-stats -404: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -404: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -404: Test timeout computed to be: 1500 -401: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -401: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd -401: EXPECTED_ERRNO is +416: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +416: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +416: Test timeout computed to be: 1500 +568: RETVAL: 0 +568: STDOUT: +568: [PLAN] +568: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha +568: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha +568: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha +568: debug : 0 +568: dose norm : 100 +568: +568: [SETTINGS] +568: flavor: d ** +568: homo_approx: n ** +568: ray_step: 1 ** +568: aperture_out: ** +568: proj_dose_out: ** +568: proj_img_out: ** +568: range_comp_out: ** +568: sigma_out: ** +568: wed_out: ** +568: beam_weight: 1 ** +568: +568: [GEOMETRY & APERTURE] +568: source: 0 -2000 0 ** +568: isocenter: 0 0 0 ** +568: vup: 0 0 1 ** +568: offset: 1500 ** +568: ap_center in pixels: 20 20 ** +568: i_res: 41 41 ** +568: spacing: 3.75 3.75 ** +568: source_size: 0 ** +568: ap_file_in: ** +568: rc_file_in: ** +568: smearing: 5 ** +568: +568: [PEAK] +568: E0: P0 +568: spread: P0 +568: weight: P0 +568: +568: Start dose calculation Beam 1 +568: Plan_calc::compute_beam_dose(beam) entry -- +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: Priority 5. Target detected. +568: Compute target wepl_min_max... +568: Apply lateral smearing to the target... +568: Smearing = 5.000000, Smearing_ap = 3.750000 +568: Strel size = (1,1), (3,3) +568: 0 1 0 +568: 1 1 1 +568: 0 1 0 +568: Apply proximal and distal ... +568: Compute max wed... +568: Compute the aperture... +568: Max wed in the target is 117.554 mm. +568: Min wed in the target is 88.5523 mm. +568: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. +568: Min and max energies for treating the PTV: 109 MeV and 130 MeV. +568: +568: 22 Mono-energetic BP used: +568: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 +568: Optimization of the particle number map for any mono-energetic slice in progress... +568: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.87445 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.87445 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.86823 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.86823 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.81247 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.81247 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.80639 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.80639 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.74919 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.74919 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.69289 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.69289 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.68596 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.68596 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.62886 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.62886 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.57127 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.57127 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.56307 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.56307 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.50537 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.50537 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.49685 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.49685 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.4384 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.4384 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.42949 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.42949 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.37035 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.37035 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.36098 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.36098 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.30119 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.30119 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.29132 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.29132 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.23096 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.23096 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.22053 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.22053 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.15969 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.15969 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: sigma_img: 41 41 302 +568: dim: 41 41 302 +568: Sigma patient computed - sigma_pt_max = 2.14863 mm. +568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) +568: Sigma range compensator computed - sigma_rc_max = 0 mm. +568: Global sigma computed - Global sigma_max = 2.14863 mm. +568: Setting RVRTS = 1 +568: FPD = 347.500001, BPD = 649.116731 +568: 41 41 302 +568: Raw dose at the maximum (0, 5, 0) : 10.689 A.U. +568: Dose normalized at the maximum to 1 x 100%. +568: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm +568: Trying to write mebs in /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-pn.txt +568: Ap 41 41 +568: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha +568: Sigma: 0.370054 seconds +568: Calc: 4.619549 seconds +568: IO: 0.115026 seconds +568: Reformat: 0.021990 seconds +568: Misc: 0.024642 seconds +568: done. +568: +568: Total execution time : 5.151637 seconds. +568: +568: STDERR: +568: Not an error 356: RETVAL: 0 356: STDOUT: Plastimatch 1.9.4 356: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha @@ -15051,22 +15461,22 @@ 356: Setting nmax, mmax = 375 21 356: >>> START 356: This problem is unconstrained. -356: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.040 s ] +356: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.039 s ] 356: CMIN 0.00 CAVG 0.00 CMAX 0.00 356: LSD 0.00 -356: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.016 s ] +356: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.008 s ] 356: CMIN -0.07 CAVG 0.01 CMAX 0.68 356: LSD 1.00 356: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.032 s ] 356: CMIN -0.35 CAVG 0.05 CMAX 3.40 356: LSD 5.00 -356: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.020 s ] +356: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.025 s ] 356: CMIN -1.48 CAVG 0.20 CMAX 14.26 356: LSD 21.00 -356: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.025 s ] +356: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.018 s ] 356: CMIN -1.74 CAVG 0.44 CMAX 32.50 356: LSD 27.95 -356: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.023 s ] +356: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.024 s ] 356: CMIN -1.73 CAVG 0.34 CMAX 23.99 356: LSD 13.11 356: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -15098,27 +15508,27 @@ 356: Saving vf... 356: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-vf.nrrd 356: Plastimatch 1.9.4 -356: Load: 0.0594451 -356: Run: 0.193996 -356: Save: 0.162523 -356: Total: 0.415964 +356: Load: 0.059469 +356: Run: 0.170795 +356: Save: 0.159559 +356: Total: 0.389823 356: Finished! 356: 356: STDERR: -356: Not an error -290/578 Test #356: plm-bsp-logfile ....................... Passed 1.05 sec -test 407 - Start 407: plm-bsp-dcos-f-stats - -407: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-f-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -407: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -407: Test timeout computed to be: 1500 404: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 404: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd 404: EXPECTED_ERRNO is -407: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -407: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd -407: EXPECTED_ERRNO is +410: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +410: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd +410: EXPECTED_ERRNO is +356: Not an error +293/578 Test #568: proton-dose-5d ........................ Passed 5.47 sec +test 425 + Start 425: plm-reg-process-a-stats + +425: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +425: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +425: Test timeout computed to be: 1500 376: RETVAL: 0 376: STDOUT: Min: -7.243 -7.243 -7.243 376: Mean: -0.004 -0.004 -0.004 @@ -15133,69 +15543,71 @@ 376: Max second derivative at: (20 20 16) 376: 376: STDERR: -376: Not an error -291/578 Test #376: plm-bsp-regularize-numeric-stats ...... Passed 0.60 sec -test 410 - Start 410: plm-reg-multi-a-stats +294/578 Test #356: plm-bsp-logfile ....................... Passed 0.92 sec +test 428 + Start 428: plm-reg-trans-a-stats -410: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -410: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -410: Test timeout computed to be: 1500 -370: RETVAL: 0 -370: STDOUT: Min: -9.485 -9.485 -9.485 -370: Mean: -0.004 -0.004 -0.004 -370: Max: 9.819 9.819 9.819 -370: Mean abs: 0.215 0.215 0.215 -370: Ave len: 0.425 -370: Jacobian: MINJAC 0.315393 MAXJAC 1.06557 -370: Energy: MINDIL -0.958 MAXDIL 0.0701264 -370: MAXSTRAIN 0.0879 TOTSTRAIN 112.949 -370: Second derivatives: MINSECDER 0 MAXSECDER 0.0362 -370: AVESECDER 0.000354 INTSECDER 4.42e+04 -370: Max second derivative at: (20 20 16) -370: -370: STDERR: +428: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +428: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +428: Test timeout computed to be: 1500 +376: Not an error 383: RETVAL: 0 383: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 383: 383: STDERR: -366: RETVAL: 0 -366: STDOUT: MIN -128.000000 AVE -127.132690 MAX 0.000000 NONZERO 54608 NUMVOX 54872 -366: -366: STDERR: -370: Not an error -292/578 Test #370: plm-bsp-regularize-none-stats ......... Passed 0.69 sec -test 413 - Start 413: plm-reg-multi-b-stats - -413: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -413: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -413: Test timeout computed to be: 1500 -366: Not an error -293/578 Test #366: plm-bsp-char-output-stats ............. Passed 0.77 sec -test 416 - Start 416: plm-reg-dv-itk-translation-stats - -416: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -416: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -416: Test timeout computed to be: 1500 -383: Not an error -294/578 Test #383: plm-bsp-landmark-c-stats .............. Passed 0.65 sec -test 425 - Start 425: plm-reg-process-a-stats +295/578 Test #376: plm-bsp-regularize-numeric-stats ...... Passed 0.59 sec +test 431 + Start 431: plm-reg-trans-b-stats -425: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -425: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -425: Test timeout computed to be: 1500 -425: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -425: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha -425: EXPECTED_ERRNO is -410: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -410: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd -410: EXPECTED_ERRNO is +431: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +431: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +431: Test timeout computed to be: 1500 +386: RETVAL: 0 +386: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 +386: +386: STDERR: 413: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 413: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd 413: EXPECTED_ERRNO is +425: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +425: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha +425: EXPECTED_ERRNO is +386: Not an error +383: Not an error +296/578 Test #386: plm-bsp-landmark-d-stats .............. Passed 0.55 sec +test 434 + Start 434: plm-reg-trans-mi-a-stats + +434: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +434: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +434: Test timeout computed to be: 1500 +416: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +416: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd +416: EXPECTED_ERRNO is +297/578 Test #383: plm-bsp-landmark-c-stats .............. Passed 0.57 sec +test 437 + Start 437: plm-reg-autores-a-stats + +437: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +437: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +437: Test timeout computed to be: 1500 +428: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +428: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha +428: EXPECTED_ERRNO is +431: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +431: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha +431: EXPECTED_ERRNO is +434: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +434: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha +434: EXPECTED_ERRNO is +437: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +437: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha +437: EXPECTED_ERRNO is +398: RETVAL: 0 +398: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 +398: +398: STDERR: +398: Not an error 368: RETVAL: 0 368: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 368: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha @@ -15229,22 +15641,22 @@ 368: Setting nmax, mmax = 1536 41 368: >>> START 368: This problem is unconstrained. -368: [ 0, 0] MSE 1339.481 NV 6859 GM 84.834 GN 23.1 [ 0.031 s ] +368: [ 0, 0] MSE 1339.481 NV 6859 GM 84.834 GN 23.1 [ 0.069 s ] 368: CMIN 0.00 CAVG 0.00 CMAX 0.00 368: LSD 0.00 -368: [ 0, 1] MSE 1311.345 NV 6859 GM 83.820 GN 22.8 [ 0.023 s ] +368: [ 0, 1] MSE 1311.345 NV 6859 GM 83.820 GN 22.8 [ 0.028 s ] 368: CMIN -0.60 CAVG -0.00 CMAX 0.08 368: LSD 1.00 -368: [ 0, 2] MSE 1202.580 NV 6859 GM 79.773 GN 21.8 [ 0.032 s ] +368: [ 0, 2] MSE 1202.580 NV 6859 GM 79.773 GN 21.8 [ 0.024 s ] 368: CMIN -2.99 CAVG -0.01 CMAX 0.42 368: LSD 5.00 -368: [ 0, 3] MSE 827.300 NV 6859 GM 63.686 GN 17.5 [ 0.020 s ] +368: [ 0, 3] MSE 827.300 NV 6859 GM 63.686 GN 17.5 [ 0.028 s ] 368: CMIN -12.56 CAVG -0.05 CMAX 1.74 368: LSD 21.00 368: [ 1, 4] MSE 213.043 NV 6859 GM -16.873 GN 5.84 [ 0.012 s ] 368: CMIN -54.37 CAVG -0.20 CMAX 6.52 368: LSD 67.10 -368: [ 2, 5] MSE 175.936 NV 6859 GM -0.450 GN 2.34 [ 0.023 s ] +368: [ 2, 5] MSE 175.936 NV 6859 GM -0.450 GN 2.34 [ 0.015 s ] 368: CMIN -51.91 CAVG -0.18 CMAX 5.91 368: LSD 13.48 368: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -15275,372 +15687,269 @@ 368: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-img.mha 368: Saving vf... 368: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd -368: Load: 0.061883 -368: Run: 0.161633 -368: Save: 0.09658 -368: Total: 0.320096 +368: Load: 0.12005 +368: Run: 0.212496 +368: Save: 0.107741 +368: Total: 0.440287 368: Finished! 368: 368: STDERR: 368: Not an error -295/578 Test #368: plm-bsp-rect .......................... Passed 0.80 sec -test 428 - Start 428: plm-reg-trans-a-stats - -428: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -428: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -428: Test timeout computed to be: 1500 -416: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -416: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd -416: EXPECTED_ERRNO is -380: RETVAL: 0 -380: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 -380: -380: STDERR: -380: Not an error -386: RETVAL: 0 -296/578 Test #380: plm-bsp-landmark-b-stats .............. Passed 0.75 sec -test 431 - Start 431: plm-reg-trans-b-stats - -431: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -431: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -431: Test timeout computed to be: 1500 -386: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 -386: -386: STDERR: -386: Not an error -297/578 Test #386: plm-bsp-landmark-d-stats .............. Passed 0.68 sec -test 434 - Start 434: plm-reg-trans-mi-a-stats - -434: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -434: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -434: Test timeout computed to be: 1500 -389: RETVAL: 0 -389: STDOUT: MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872 -389: -389: STDERR: -389: Not an error -398: RETVAL: 0 -398: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 -398: -398: STDERR: -398: Not an error -298/578 Test #389: plm-bsp-landmark-e-stats .............. Passed 0.64 sec -test 437 - Start 437: plm-reg-autores-a-stats - -437: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -437: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -437: Test timeout computed to be: 1500 -299/578 Test #398: plm-bsp-dcos-c-stats .................. Passed 0.43 sec +298/578 Test #398: plm-bsp-dcos-c-stats .................. Passed 0.41 sec test 440 Start 440: plm-reg-autores-b-stats 440: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 440: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 440: Test timeout computed to be: 1500 -428: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -428: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha -428: EXPECTED_ERRNO is -395: RETVAL: 0 -395: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 -395: -395: STDERR: -395: Not an error -300/578 Test #395: plm-bsp-dcos-b-stats .................. Passed 0.57 sec +389: RETVAL: 0 +389: STDOUT: MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872 +389: +389: STDERR: +299/578 Test #368: plm-bsp-rect .......................... Passed 0.92 sec test 446 Start 446: plm-compose-a-stats 446: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 446: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 446: Test timeout computed to be: 1500 +389: Not an error 392: RETVAL: 0 392: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 392: 392: STDERR: 392: Not an error -301/578 Test #392: plm-bsp-dcos-a-stats .................. Passed 0.65 sec +300/578 Test #389: plm-bsp-landmark-e-stats .............. Passed 0.63 sec test 450 Start 450: plm-compose-b-stats 450: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 450: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 450: Test timeout computed to be: 1500 -431: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -431: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha -431: EXPECTED_ERRNO is -434: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -434: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha -434: EXPECTED_ERRNO is -437: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -437: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha -437: EXPECTED_ERRNO is 440: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 440: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha 440: EXPECTED_ERRNO is -446: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -446: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha -446: EXPECTED_ERRNO is +301/578 Test #392: plm-bsp-dcos-a-stats .................. Passed 0.62 sec +test 454 + Start 454: plm-compose-c-stats + +454: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +454: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +454: Test timeout computed to be: 1500 401: RETVAL: 0 401: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 401: 401: STDERR: 401: Not an error +302/578 Test #401: plm-bsp-dcos-d-stats .................. Passed 0.42 sec +test 457 + Start 457: plm-resample-a-stats + +457: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +457: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +457: Test timeout computed to be: 1500 +446: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +446: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha +446: EXPECTED_ERRNO is 450: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 450: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha 450: EXPECTED_ERRNO is -302/578 Test #401: plm-bsp-dcos-d-stats .................. Passed 0.49 sec -test 454 - Start 454: plm-compose-c-stats - -454: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -454: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -454: Test timeout computed to be: 1500 454: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 454: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha 454: EXPECTED_ERRNO is +457: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +457: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha +457: EXPECTED_ERRNO is +431: RETVAL: 0 +431: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872 +431: +431: STDERR: +395: RETVAL: 0 +395: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 +395: +395: STDERR: 407: RETVAL: 0 407: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 407: 407: STDERR: -407: Not an error -303/578 Test #407: plm-bsp-dcos-f-stats .................. Passed 0.53 sec -test 457 - Start 457: plm-resample-a-stats - -457: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -457: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -457: Test timeout computed to be: 1500 -404: RETVAL: 0 -404: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 -404: -404: STDERR: -404: Not an error -304/578 Test #404: plm-bsp-dcos-e-stats .................. Passed 0.58 sec +431: Not an error +303/578 Test #431: plm-reg-trans-b-stats ................. Passed 0.33 sec test 460 Start 460: plm-resample-b-stats 460: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 460: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 460: Test timeout computed to be: 1500 -457: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -457: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha -457: EXPECTED_ERRNO is -410: RETVAL: 0 -410: STDOUT: Min: -20.189 -0.190 -0.190 -410: Mean: -20.000 -0.000 -0.000 -410: Max: -19.810 0.190 0.190 -410: Mean abs: 20.000 0.000 0.000 -410: Ave len: 20.000 -410: Jacobian: MINJAC 0.978516 MAXJAC 1.02157 -410: Energy: MINDIL -0.0216 MAXDIL 0.0215666 -410: MAXSTRAIN 0.0221 TOTSTRAIN 0.0501571 -410: Second derivatives: MINSECDER 0 MAXSECDER 0.00749 -410: AVESECDER 1.12e-05 INTSECDER 1.4e+03 -410: Max second derivative at: (18 20 16) -410: -410: STDERR: -410: Not an error -305/578 Test #410: plm-reg-multi-a-stats ................. Passed 0.51 sec +407: Not an error +304/578 Test #407: plm-bsp-dcos-f-stats .................. Passed 0.43 sec test 463 Start 463: plm-resample-c-stats 463: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 463: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 463: Test timeout computed to be: 1500 -460: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -460: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha -460: EXPECTED_ERRNO is -440: RETVAL: 0 -440: STDOUT: MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872 -440: -440: STDERR: -440: Not an error -434: RETVAL: 0 -434: STDOUT: MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872 -434: -434: STDERR: -434: Not an error -306/578 Test #440: plm-reg-autores-b-stats ............... Passed 0.31 sec +395: Not an error +305/578 Test #395: plm-bsp-dcos-b-stats .................. Passed 0.61 sec test 466 Start 466: plm-scale-a-stats 466: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 466: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 466: Test timeout computed to be: 1500 -463: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -463: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha -463: EXPECTED_ERRNO is -307/578 Test #434: plm-reg-trans-mi-a-stats .............. Passed 0.36 sec +434: RETVAL: 0 +434: STDOUT: MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872 +434: +434: STDERR: +434: Not an error +306/578 Test #434: plm-reg-trans-mi-a-stats .............. Passed 0.33 sec test 469 Start 469: plm-scale-vf-a-stats 469: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-vf-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 469: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 469: Test timeout computed to be: 1500 -413: RETVAL: 0 -413: STDOUT: MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872 -413: -413: STDERR: -413: Not an error -308/578 Test #413: plm-reg-multi-b-stats ................. Passed 0.50 sec +416: RETVAL: 0 +416: STDOUT: MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872 +416: +416: STDERR: +416: Not an error +466: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +466: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd +466: EXPECTED_ERRNO is +307/578 Test #416: plm-reg-dv-itk-translation-stats ...... Passed 0.43 sec test 471 Start 471: plm-sift-a 471: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-sift-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=sift;--output-ps-1;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 471: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 471: Test timeout computed to be: 1500 -416: RETVAL: 0 -416: STDOUT: MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872 -416: -416: STDERR: -416: Not an error -309/578 Test #416: plm-reg-dv-itk-translation-stats ...... Passed 0.50 sec +404: RETVAL: 0 +404: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 +404: +404: STDERR: +404: Not an error +460: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +460: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha +460: EXPECTED_ERRNO is +428: RETVAL: 0 +428: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872 +428: +428: STDERR: +308/578 Test #404: plm-bsp-dcos-e-stats .................. Passed 0.50 sec test 475 Start 475: plm-thumbnail-a-stats 475: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 475: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 475: Test timeout computed to be: 1500 -466: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -466: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd -466: EXPECTED_ERRNO is +428: Not an error +437: RETVAL: 0 +437: STDOUT: MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872 +437: +437: STDERR: +437: Not an error 469: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 469: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd 469: EXPECTED_ERRNO is -471: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -471: PARMS is sift;--output-ps-1;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha -471: EXPECTED_ERRNO is -428: RETVAL: 0 -428: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872 -428: -428: STDERR: -428: Not an error -310/578 Test #428: plm-reg-trans-a-stats ................. Passed 0.47 sec +463: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +463: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha +463: EXPECTED_ERRNO is +309/578 Test #428: plm-reg-trans-a-stats ................. Passed 0.41 sec test 478 Start 478: plm-thumbnail-b-stats 478: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 478: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 478: Test timeout computed to be: 1500 -475: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -475: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png -475: EXPECTED_ERRNO is -437: RETVAL: 0 -437: STDOUT: MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872 -437: -437: STDERR: -437: Not an error -311/578 Test #437: plm-reg-autores-a-stats ............... Passed 0.44 sec +310/578 Test #437: plm-reg-autores-a-stats ............... Passed 0.36 sec test 481 Start 481: plm-thumbnail-c-stats 481: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 481: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 481: Test timeout computed to be: 1500 -478: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -478: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png -478: EXPECTED_ERRNO is -431: RETVAL: 0 -431: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872 -431: -431: STDERR: -431: Not an error -312/578 Test #431: plm-reg-trans-b-stats ................. Passed 0.48 sec +410: RETVAL: 0 +410: STDOUT: Min: -20.189 -0.190 -0.190 +410: Mean: -20.000 -0.000 -0.000 +410: Max: -19.810 0.190 0.190 +410: Mean abs: 20.000 0.000 0.000 +410: Ave len: 20.000 +410: Jacobian: MINJAC 0.978516 MAXJAC 1.02157 +410: Energy: MINDIL -0.0216 MAXDIL 0.0215666 +410: MAXSTRAIN 0.0221 TOTSTRAIN 0.0501571 +410: Second derivatives: MINSECDER 0 MAXSECDER 0.00749 +410: AVESECDER 1.12e-05 INTSECDER 1.4e+03 +410: Max second derivative at: (18 20 16) +410: +410: STDERR: +471: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +471: PARMS is sift;--output-ps-1;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha +471: EXPECTED_ERRNO is +413: RETVAL: 0 +413: STDOUT: MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872 +413: +413: STDERR: +410: Not an error +311/578 Test #410: plm-reg-multi-a-stats ................. Passed 0.50 sec test 484 Start 484: plm-intersect-stats 484: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-intersect-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 484: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 484: Test timeout computed to be: 1500 -450: RETVAL: 0 -450: STDOUT: Min: 0.000 -1.573 -1.573 -450: Mean: 13.794 -0.035 -0.034 -450: Max: 20.615 1.329 1.329 -450: Mean abs: 13.794 0.281 0.281 -450: Ave len: 13.805 -450: Jacobian: MINJAC -6.27693 MAXJAC 1.08247 -450: Energy: MINDIL -6.41 MAXDIL 0.0798482 -450: MAXSTRAIN 14.2 TOTSTRAIN 28436.8 -450: Second derivatives: MINSECDER 0 MAXSECDER 165 -450: AVESECDER 6.5 INTSECDER 8.13e+05 -450: Max second derivative at: (30 18 18) -450: -450: STDERR: -450: Not an error -313/578 Test #450: plm-compose-b-stats ................... Passed 0.42 sec +475: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +475: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png +475: EXPECTED_ERRNO is +425: RETVAL: 0 +425: STDOUT: MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872 +425: +425: STDERR: +425: Not an error +413: Not an error +478: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +478: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png +478: EXPECTED_ERRNO is +312/578 Test #425: plm-reg-process-a-stats ............... Passed 0.46 sec test 487 Start 487: plm-union-stats 487: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-union-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 487: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 487: Test timeout computed to be: 1500 -481: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -481: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png -481: EXPECTED_ERRNO is -425: RETVAL: 0 -425: STDOUT: MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872 -425: -425: STDERR: -425: Not an error -314/578 Test #425: plm-reg-process-a-stats ............... Passed 0.60 sec +313/578 Test #413: plm-reg-multi-b-stats ................. Passed 0.50 sec test 490 Start 490: plm-threshold-a-stats 490: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 490: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 490: Test timeout computed to be: 1500 -484: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -484: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha -484: EXPECTED_ERRNO is 487: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 487: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha 487: EXPECTED_ERRNO is 490: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 490: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha 490: EXPECTED_ERRNO is -457: RETVAL: 0 -457: STDOUT: MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859 -457: -457: STDERR: -457: Not an error -315/578 Test #457: plm-resample-a-stats .................. Passed 0.32 sec +481: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +481: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png +481: EXPECTED_ERRNO is +484: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +484: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha +484: EXPECTED_ERRNO is +440: RETVAL: 0 +440: STDOUT: MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872 +440: +440: STDERR: +440: Not an error +314/578 Test #440: plm-reg-autores-b-stats ............... Passed 0.31 sec test 493 Start 493: plm-threshold-b-stats 493: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 493: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 493: Test timeout computed to be: 1500 -454: RETVAL: 0 -454: STDOUT: Min: 0.000 -2.171 -2.171 -454: Mean: 12.523 -0.008 -0.008 -454: Max: 21.615 1.811 1.811 -454: Mean abs: 12.523 0.418 0.418 -454: Ave len: 12.552 -454: Jacobian: MINJAC -6.97561 MAXJAC 1.2529 -454: Energy: MINDIL -6.7 MAXDIL 0.315048 -454: MAXSTRAIN 47 TOTSTRAIN 30590.5 -454: Second derivatives: MINSECDER 0 MAXSECDER 1.27e+03 -454: AVESECDER 7.37 INTSECDER 9.21e+05 -454: Max second derivative at: (30 20 27) -454: -454: STDERR: -454: Not an error -316/578 Test #454: plm-compose-c-stats ................... Passed 0.48 sec -test 496 - Start 496: plm-threshold-c-stats - -496: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -496: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -496: Test timeout computed to be: 1500 493: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 493: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha 493: EXPECTED_ERRNO is -496: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -496: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha -496: EXPECTED_ERRNO is 446: RETVAL: 0 446: STDOUT: Min: 0.000 -1.573 -1.573 446: Mean: 13.794 -0.035 -0.034 @@ -15656,95 +15965,118 @@ 446: 446: STDERR: 446: Not an error -317/578 Test #446: plm-compose-a-stats ................... Passed 0.63 sec +315/578 Test #446: plm-compose-a-stats ................... Passed 0.39 sec +test 496 + Start 496: plm-threshold-c-stats + +496: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +496: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +496: Test timeout computed to be: 1500 +454: RETVAL: 0 +454: STDOUT: Min: 0.000 -2.171 -2.171 +454: Mean: 12.523 -0.008 -0.008 +454: Max: 21.615 1.811 1.811 +454: Mean abs: 12.523 0.418 0.418 +454: Ave len: 12.552 +454: Jacobian: MINJAC -6.97561 MAXJAC 1.2529 +454: Energy: MINDIL -6.7 MAXDIL 0.315048 +454: MAXSTRAIN 47 TOTSTRAIN 30590.5 +454: Second derivatives: MINSECDER 0 MAXSECDER 1.27e+03 +454: AVESECDER 7.37 INTSECDER 9.21e+05 +454: Max second derivative at: (30 20 27) +454: +454: STDERR: +454: Not an error +316/578 Test #454: plm-compose-c-stats ................... Passed 0.38 sec test 502 Start 502: plm-warp-a-stats 502: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 502: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 502: Test timeout computed to be: 1500 -460: RETVAL: 0 -460: STDOUT: MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000 -460: -460: STDERR: -460: Not an error -318/578 Test #460: plm-resample-b-stats .................. Passed 0.42 sec +450: RETVAL: 0 +450: STDOUT: Min: 0.000 -1.573 -1.573 +450: Mean: 13.794 -0.035 -0.034 +450: Max: 20.615 1.329 1.329 +450: Mean abs: 13.794 0.281 0.281 +450: Ave len: 13.805 +450: Jacobian: MINJAC -6.27693 MAXJAC 1.08247 +450: Energy: MINDIL -6.41 MAXDIL 0.0798482 +450: MAXSTRAIN 14.2 TOTSTRAIN 28436.8 +450: Second derivatives: MINSECDER 0 MAXSECDER 165 +450: AVESECDER 6.5 INTSECDER 8.13e+05 +450: Max second derivative at: (30 18 18) +450: +450: STDERR: +496: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +496: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha +496: EXPECTED_ERRNO is +450: Not an error +317/578 Test #450: plm-compose-b-stats ................... Passed 0.42 sec test 505 Start 505: plm-warp-b-stats-1 505: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 505: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 505: Test timeout computed to be: 1500 +457: RETVAL: 0 +457: STDOUT: MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859 +457: +457: STDERR: +469: RETVAL: 0 +469: STDOUT: Min: 4.000 0.000 0.000 +469: Mean: 4.000 0.000 0.000 +469: Max: 4.000 0.000 0.000 +469: Mean abs: 4.000 0.000 0.000 +469: Ave len: 4.000 +469: Jacobian: MINJAC 1 MAXJAC 1 +469: Energy: MINDIL 0 MAXDIL 0 +469: MAXSTRAIN 0 TOTSTRAIN 0 +469: Second derivatives: MINSECDER 0 MAXSECDER 0 +469: AVESECDER 0 INTSECDER 0 +469: Max second derivative at: (1 1 1) +469: +469: STDERR: 502: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 502: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha 502: EXPECTED_ERRNO is -505: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -505: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha -505: EXPECTED_ERRNO is -463: RETVAL: 0 -463: STDOUT: Min: 1.219 -2.075 -2.075 -463: Mean: 6.707 -0.405 -0.405 -463: Max: 13.751 1.148 1.148 -463: Mean abs: 6.707 0.706 0.706 -463: Ave len: 6.825 -463: Jacobian: MINJAC 0.718591 MAXJAC 1.16208 -463: Energy: MINDIL -0.304 MAXDIL 0.195159 -463: MAXSTRAIN 0.277 TOTSTRAIN -132.025 -463: Second derivatives: MINSECDER 0.000246 MAXSECDER 0.00708 -463: AVESECDER 0.00129 INTSECDER 161 -463: Max second derivative at: (16 16 16) -463: -463: STDERR: -463: Not an error -319/578 Test #463: plm-resample-c-stats .................. Passed 0.44 sec +469: Not an error +318/578 Test #469: plm-scale-vf-a-stats .................. Passed 0.29 sec test 507 Start 507: plm-warp-b-stats-2 507: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 507: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 507: Test timeout computed to be: 1500 -466: RETVAL: 0 -466: STDOUT: MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872 -466: -466: STDERR: -466: Not an error -320/578 Test #466: plm-scale-a-stats ..................... Passed 0.44 sec +457: Not an error +319/578 Test #457: plm-resample-a-stats .................. Passed 0.42 sec test 510 Start 510: plm-warp-c-stats 510: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 510: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 510: Test timeout computed to be: 1500 -481: RETVAL: 0 -481: STDOUT: MIN 0.000000 AVE 8.203125 MAX 119.000000 NONZERO 32 NUMVOX 256 -481: -481: STDERR: -481: Not an error -507: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -507: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha -507: EXPECTED_ERRNO is -487: RETVAL: 0 -487: STDOUT: MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872 -487: -487: STDERR: -487: Not an error -321/578 Test #481: plm-thumbnail-c-stats ................. Passed 0.35 sec +466: RETVAL: 0 +466: STDOUT: MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872 +466: +466: STDERR: +466: Not an error +320/578 Test #466: plm-scale-a-stats ..................... Passed 0.34 sec test 513 Start 513: plm-warp-d-stats 513: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 513: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 513: Test timeout computed to be: 1500 -322/578 Test #487: plm-union-stats ....................... Passed 0.34 sec -test 516 - Start 516: plm-warp-f-stats-1 - -516: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-warp-f-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -516: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -516: Test timeout computed to be: 1500 +505: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +505: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha +505: EXPECTED_ERRNO is 510: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 510: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha 510: EXPECTED_ERRNO is +507: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +507: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha +507: EXPECTED_ERRNO is 513: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 513: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha 513: EXPECTED_ERRNO is @@ -15753,249 +16085,259 @@ 478: 478: STDERR: 478: Not an error -323/578 Test #478: plm-thumbnail-b-stats ................. Passed 0.42 sec +321/578 Test #478: plm-thumbnail-b-stats ................. Passed 0.33 sec +test 516 + Start 516: plm-warp-f-stats-1 + +516: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-warp-f-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +516: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +516: Test timeout computed to be: 1500 +484: RETVAL: 0 +484: STDOUT: MIN 0.000000 AVE 0.013285 MAX 1.000000 NONZERO 729 NUMVOX 54872 +484: +484: STDERR: +484: Not an error +322/578 Test #484: plm-intersect-stats ................... Passed 0.33 sec test 519 Start 519: plm-warp-g-stats-1 519: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-g-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 519: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 519: Test timeout computed to be: 1500 -490: RETVAL: 0 -490: STDOUT: MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872 -490: -490: STDERR: -490: Not an error -324/578 Test #490: plm-threshold-a-stats ................. Passed 0.35 sec +481: RETVAL: 0 +481: STDOUT: MIN 0.000000 AVE 8.203125 MAX 119.000000 NONZERO 32 NUMVOX 256 +481: +481: STDERR: +481: Not an error +516: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +516: PARMS is header;plm-warp-f-img.nrrd +516: EXPECTED_ERRNO is +323/578 Test #481: plm-thumbnail-c-stats ................. Passed 0.36 sec test 522 Start 522: plm-warp-h-stats-1 522: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-h-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;plm-warp-h-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 522: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 522: Test timeout computed to be: 1500 -516: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -516: PARMS is header;plm-warp-f-img.nrrd -516: EXPECTED_ERRNO is -519: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -519: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd -519: EXPECTED_ERRNO is -522: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -522: PARMS is stats;plm-warp-h-img.nrrd -522: EXPECTED_ERRNO is -475: RETVAL: 0 -475: STDOUT: MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256 -475: -475: STDERR: -475: Not an error -484: RETVAL: 0 -484: STDOUT: MIN 0.000000 AVE 0.013285 MAX 1.000000 NONZERO 729 NUMVOX 54872 -484: -484: STDERR: -484: Not an error -325/578 Test #475: plm-thumbnail-a-stats ................. Passed 0.57 sec +490: RETVAL: 0 +490: STDOUT: MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872 +490: +490: STDERR: +490: Not an error +324/578 Test #490: plm-threshold-a-stats ................. Passed 0.34 sec test 525 Start 525: plm-warp-i-stats-1 525: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-i-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;plm-warp-i-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 525: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 525: Test timeout computed to be: 1500 -326/578 Test #484: plm-intersect-stats ................... Passed 0.50 sec +460: RETVAL: 0 +460: STDOUT: MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000 +460: +460: STDERR: +487: RETVAL: 0 +487: STDOUT: MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872 +487: +487: STDERR: +487: Not an error +325/578 Test #487: plm-union-stats ....................... Passed 0.35 sec test 528 Start 528: plm-xf-convert-b 528: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 528: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 528: Test timeout computed to be: 1500 -469: RETVAL: 0 -469: STDOUT: Min: 4.000 0.000 0.000 -469: Mean: 4.000 0.000 0.000 -469: Max: 4.000 0.000 0.000 -469: Mean abs: 4.000 0.000 0.000 -469: Ave len: 4.000 -469: Jacobian: MINJAC 1 MAXJAC 1 -469: Energy: MINDIL 0 MAXDIL 0 -469: MAXSTRAIN 0 TOTSTRAIN 0 -469: Second derivatives: MINSECDER 0 MAXSECDER 0 -469: AVESECDER 0 INTSECDER 0 -469: Max second derivative at: (1 1 1) -469: -469: STDERR: -469: Not an error -327/578 Test #469: plm-scale-vf-a-stats .................. Passed 0.65 sec +460: Not an error +463: RETVAL: 0 +463: STDOUT: Min: 1.219 -2.075 -2.075 +463: Mean: 6.707 -0.405 -0.405 +463: Max: 13.751 1.148 1.148 +463: Mean abs: 6.707 0.706 0.706 +463: Ave len: 6.825 +463: Jacobian: MINJAC 0.718591 MAXJAC 1.16208 +463: Energy: MINDIL -0.304 MAXDIL 0.195159 +463: MAXSTRAIN 0.277 TOTSTRAIN -132.025 +463: Second derivatives: MINSECDER 0.000246 MAXSECDER 0.00708 +463: AVESECDER 0.00129 INTSECDER 161 +463: Max second derivative at: (16 16 16) +463: +463: STDERR: +326/578 Test #460: plm-resample-b-stats .................. Passed 0.47 sec test 532 Start 532: plm-xf-convert-d-warp-1-stats 532: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 532: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 532: Test timeout computed to be: 1500 -525: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -525: PARMS is stats;plm-warp-i-img.nrrd -525: EXPECTED_ERRNO is -528: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -528: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10 -528: EXPECTED_ERRNO is -532: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -532: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd -532: EXPECTED_ERRNO is -496: RETVAL: 0 -496: STDOUT: MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872 -496: -496: STDERR: -496: Not an error -328/578 Test #496: plm-threshold-c-stats ................. Passed 0.48 sec +493: RETVAL: 0 +493: STDOUT: MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872 +493: +493: STDERR: +493: Not an error +519: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +519: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd +519: EXPECTED_ERRNO is +463: Not an error +327/578 Test #493: plm-threshold-b-stats ................. Passed 0.33 sec test 535 Start 535: plm-xf-convert-d-warp-2-stats 535: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 535: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 535: Test timeout computed to be: 1500 -493: RETVAL: 0 -493: STDOUT: MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872 -493: -493: STDERR: -493: Not an error -329/578 Test #493: plm-threshold-b-stats ................. Passed 0.52 sec +522: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +522: PARMS is stats;plm-warp-h-img.nrrd +522: EXPECTED_ERRNO is +328/578 Test #463: plm-resample-c-stats .................. Passed 0.50 sec test 541 Start 541: plm-xf-convert-h-stats 541: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-h-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 541: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 541: Test timeout computed to be: 1500 -535: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -535: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd -535: EXPECTED_ERRNO is -541: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -541: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd -541: EXPECTED_ERRNO is -519: RETVAL: 0 -519: STDOUT: MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872 -519: -519: STDERR: -519: Not an error -505: RETVAL: 0 -505: STDOUT: Min: 0.875 -1.519 -1.519 -505: Mean: 5.773 0.002 0.002 -505: Max: 12.239 1.255 1.255 -505: Mean abs: 5.773 0.518 0.518 -505: Ave len: 5.853 -505: Jacobian: MINJAC 0.815198 MAXJAC 1.18104 -505: Energy: MINDIL -0.184 MAXDIL 0.216011 -505: MAXSTRAIN 0.267 TOTSTRAIN 1114.81 -505: Second derivatives: MINSECDER 0.00025 MAXSECDER 0.00723 -505: AVESECDER 0.00122 INTSECDER 152 -505: Max second derivative at: (15 15 15) -505: -505: STDERR: -505: Not an error -330/578 Test #519: plm-warp-g-stats-1 .................... Passed 0.31 sec +525: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +525: PARMS is stats;plm-warp-i-img.nrrd +525: EXPECTED_ERRNO is +528: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +528: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10 +528: EXPECTED_ERRNO is +475: RETVAL: 0 +475: STDOUT: MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256 +475: +475: STDERR: +475: Not an error +532: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +532: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd +532: EXPECTED_ERRNO is +329/578 Test #475: plm-thumbnail-a-stats ................. Passed 0.47 sec test 544 Start 544: plm-xf-convert-i-stats 544: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-i-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 544: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 544: Test timeout computed to be: 1500 -507: RETVAL: 0 -507: STDOUT: MIN -999.876892 AVE -775.668274 MAX 0.000000 NONZERO 49099 NUMVOX 54872 -507: -507: STDERR: -507: Not an error -331/578 Test #505: plm-warp-b-stats-1 .................... Passed 0.49 sec +535: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +535: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd +535: EXPECTED_ERRNO is +541: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +541: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd +541: EXPECTED_ERRNO is +496: RETVAL: 0 +496: STDOUT: MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872 +496: +496: STDERR: +496: Not an error +544: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +544: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd +544: EXPECTED_ERRNO is +330/578 Test #496: plm-threshold-c-stats ................. Passed 0.37 sec test 547 Start 547: xf-invert-vf-zero-1-stats 547: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 547: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 547: Test timeout computed to be: 1500 -332/578 Test #507: plm-warp-b-stats-2 .................... Passed 0.44 sec +547: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +547: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha +547: EXPECTED_ERRNO is +502: RETVAL: 0 +502: STDOUT: Min: 0.875 -1.519 -1.519 +502: Mean: 5.773 0.002 0.002 +502: Max: 12.239 1.255 1.255 +502: Mean abs: 5.773 0.518 0.518 +502: Ave len: 5.853 +502: Jacobian: MINJAC 0.815198 MAXJAC 1.18104 +502: Energy: MINDIL -0.184 MAXDIL 0.216011 +502: MAXSTRAIN 0.267 TOTSTRAIN 1114.81 +502: Second derivatives: MINSECDER 0.00025 MAXSECDER 0.00723 +502: AVESECDER 0.00122 INTSECDER 152 +502: Max second derivative at: (15 15 15) +502: +502: STDERR: +502: Not an error +510: RETVAL: 0 +510: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872 +510: +510: STDERR: +510: Not an error +331/578 Test #502: plm-warp-a-stats ...................... Passed 0.42 sec test 550 Start 550: xf-invert-vf-trans-1-stats 550: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 550: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 550: Test timeout computed to be: 1500 -544: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -544: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd -544: EXPECTED_ERRNO is -513: RETVAL: 0 -513: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872 -513: -513: STDERR: -513: Not an error -333/578 Test #513: plm-warp-d-stats ...................... Passed 0.42 sec +507: RETVAL: 0 +507: STDOUT: MIN -999.876892 AVE -775.668274 MAX 0.000000 NONZERO 49099 NUMVOX 54872 +507: +507: STDERR: +332/578 Test #510: plm-warp-c-stats ...................... Passed 0.37 sec test 552 Start 552: xf-invert-vrs-a 552: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vrs-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 552: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 552: Test timeout computed to be: 1500 -510: RETVAL: 0 -510: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872 -510: -510: STDERR: -510: Not an error -547: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -547: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha -547: EXPECTED_ERRNO is -334/578 Test #510: plm-warp-c-stats ...................... Passed 0.46 sec +507: Not an error +333/578 Test #507: plm-warp-b-stats-2 .................... Passed 0.39 sec test 554 Start 554: xf-invert-vrs-b 554: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vrs-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-b.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 554: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 554: Test timeout computed to be: 1500 -516: RETVAL: 0 -516: STDOUT: Type = float -516: Planes = 1 -516: Origin = -147.5140 -381.8964 -136.9799 -516: Size = 38 38 38 -516: Spacing = 13.1579 13.1579 13.1579 -516: Direction = 0.9254 0.0180 -0.3785 0.1632 0.8826 0.4410 0.3420 -0.4698 0.8138 -516: -516: STDERR: -516: Not an error +552: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +552: PARMS is xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm +552: EXPECTED_ERRNO is 550: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 550: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha 550: EXPECTED_ERRNO is -335/578 Test #516: plm-warp-f-stats-1 .................... Passed 0.45 sec +505: RETVAL: 0 +505: STDOUT: Min: 0.875 -1.519 -1.519 +505: Mean: 5.773 0.002 0.002 +505: Max: 12.239 1.255 1.255 +505: Mean abs: 5.773 0.518 0.518 +505: Ave len: 5.853 +505: Jacobian: MINJAC 0.815198 MAXJAC 1.18104 +505: Energy: MINDIL -0.184 MAXDIL 0.216011 +505: MAXSTRAIN 0.267 TOTSTRAIN 1114.81 +505: Second derivatives: MINSECDER 0.00025 MAXSECDER 0.00723 +505: AVESECDER 0.00122 INTSECDER 152 +505: Max second derivative at: (15 15 15) +505: +505: STDERR: +554: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +554: PARMS is xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-b.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm +554: EXPECTED_ERRNO is +505: Not an error +513: RETVAL: 0 +513: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872 +513: +513: STDERR: +334/578 Test #505: plm-warp-b-stats-1 .................... Passed 0.48 sec test 557 Start 557: proton-dose-1-stats 557: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 557: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 557: Test timeout computed to be: 1500 -552: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -552: PARMS is xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm -552: EXPECTED_ERRNO is -554: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -554: PARMS is xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-b.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm -554: EXPECTED_ERRNO is -502: RETVAL: 0 -502: STDOUT: Min: 0.875 -1.519 -1.519 -502: Mean: 5.773 0.002 0.002 -502: Max: 12.239 1.255 1.255 -502: Mean abs: 5.773 0.518 0.518 -502: Ave len: 5.853 -502: Jacobian: MINJAC 0.815198 MAXJAC 1.18104 -502: Energy: MINDIL -0.184 MAXDIL 0.216011 -502: MAXSTRAIN 0.267 TOTSTRAIN 1114.81 -502: Second derivatives: MINSECDER 0.00025 MAXSECDER 0.00723 -502: AVESECDER 0.00122 INTSECDER 152 -502: Max second derivative at: (15 15 15) -502: -502: STDERR: -502: Not an error -336/578 Test #502: plm-warp-a-stats ...................... Passed 0.67 sec +516: RETVAL: 0 +516: STDOUT: Type = float +516: Planes = 1 +516: Origin = -147.5140 -381.8964 -136.9799 +516: Size = 38 38 38 +516: Spacing = 13.1579 13.1579 13.1579 +516: Direction = 0.9254 0.0180 -0.3785 0.1632 0.8826 0.4410 0.3420 -0.4698 0.8138 +516: +516: STDERR: +513: Not an error +335/578 Test #513: plm-warp-d-stats ...................... Passed 0.47 sec test 560 Start 560: proton-dose-4a-stats 560: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 560: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 560: Test timeout computed to be: 1500 -557: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -557: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha -557: EXPECTED_ERRNO is -560: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -560: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha -560: EXPECTED_ERRNO is 528: RETVAL: 0 528: STDOUT: about to xform_convert 528: bspline_xform_initialize @@ -16008,349 +16350,371 @@ 528: did xform_convert 528: 528: STDERR: +516: Not an error +336/578 Test #516: plm-warp-f-stats-1 .................... Passed 0.45 sec +test 563 + Start 563: proton-dose-4d-stats + +563: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +563: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +563: Test timeout computed to be: 1500 +532: RETVAL: 0 +532: STDOUT: MIN -999.979248 AVE -745.231567 MAX 0.000000 NONZERO 5851 NUMVOX 6859 +532: +532: STDERR: 528: Not an error -337/578 Test #528: plm-xf-convert-b ...................... Passed 0.45 sec +337/578 Test #528: plm-xf-convert-b ...................... Passed 0.41 sec test 566 Start 566: proton-dose-5a-stats 566: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 566: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 566: Test timeout computed to be: 1500 -522: RETVAL: 0 -522: STDOUT: MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872 -522: -522: STDERR: -522: Not an error -541: RETVAL: 0 -541: STDOUT: Min: 20.000 0.000 0.000 -541: Mean: 20.000 0.000 0.000 -541: Max: 20.000 0.000 0.000 -541: Mean abs: 20.000 0.000 0.000 -541: Ave len: 20.000 -541: Jacobian: MINJAC 1 MAXJAC 1 -541: Energy: MINDIL 0 MAXDIL 0 -541: MAXSTRAIN 0 TOTSTRAIN 0 -541: Second derivatives: MINSECDER 0 MAXSECDER 0 -541: AVESECDER 0 INTSECDER 0 -541: Max second derivative at: (1 1 1) -541: -541: STDERR: -338/578 Test #522: plm-warp-h-stats-1 .................... Passed 0.60 sec +535: RETVAL: 0 +535: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +535: +535: STDERR: +535: Not an error +338/578 Test #535: plm-xf-convert-d-warp-2-stats ......... Passed 0.40 sec test 569 Start 569: proton-dose-5d-stats 569: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 569: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 569: Test timeout computed to be: 1500 -541: Not an error -339/578 Test #541: plm-xf-convert-h-stats ................ Passed 0.36 sec +532: Not an error +339/578 Test #532: plm-xf-convert-d-warp-1-stats ......... Passed 0.44 sec test 572 Start 572: proton-dose-6a-stats -572: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -572: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -572: Test timeout computed to be: 1500 +572: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +572: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +572: Test timeout computed to be: 1500 +519: RETVAL: 0 +519: STDOUT: MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872 +519: +519: STDERR: +519: Not an error +544: RETVAL: 0 +544: STDOUT: Min: 7.161 -0.245 -0.245 +544: Mean: 8.546 0.041 0.041 +544: Max: 9.698 0.313 0.313 +544: Mean abs: 8.546 0.144 0.144 +544: Ave len: 8.549 +544: Jacobian: MINJAC 0.996419 MAXJAC 1.00089 +544: Energy: MINDIL -0.00359 MAXDIL 0.00089729 +544: MAXSTRAIN 0.000899 TOTSTRAIN -0.0111365 +544: Second derivatives: MINSECDER 6.15e-05 MAXSECDER 8.87e-05 +544: AVESECDER 9.37e-06 INTSECDER 1.17e+03 +544: Max second derivative at: (1 1 1) +544: +544: STDERR: +544: Not an error +557: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +557: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha +557: EXPECTED_ERRNO is +340/578 Test #544: plm-xf-convert-i-stats ................ Passed 0.40 sec +test 574 + Start 574: proton-dose-8d + +574: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +574: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +574: Test timeout computed to be: 1500 566: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 566: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha 566: EXPECTED_ERRNO is 569: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 569: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha 569: EXPECTED_ERRNO is -532: RETVAL: 0 -532: STDOUT: MIN -999.979248 AVE -745.231567 MAX 0.000000 NONZERO 5851 NUMVOX 6859 -532: -532: STDERR: -532: Not an error -340/578 Test #532: plm-xf-convert-d-warp-1-stats ......... Passed 0.51 sec -test 574 - Start 574: proton-dose-8d - -574: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -574: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -574: Test timeout computed to be: 1500 -572: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -572: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha -572: EXPECTED_ERRNO is -574: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -574: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt -574: EXPECTED_ERRNO is -535: RETVAL: 0 -535: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -535: -535: STDERR: -535: Not an error -341/578 Test #535: plm-xf-convert-d-warp-2-stats ......... Passed 0.51 sec +563: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +563: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha +563: EXPECTED_ERRNO is +341/578 Test #519: plm-warp-g-stats-1 .................... Passed 0.52 sec test 576 Start 576: wed-a 576: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=wed-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=wed;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 576: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 576: Test timeout computed to be: 1500 +572: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +572: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha +572: EXPECTED_ERRNO is +560: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +560: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha +560: EXPECTED_ERRNO is +547: RETVAL: 0 +547: STDOUT: Min: 0.000 0.000 0.000 +547: Mean: 0.000 0.000 0.000 +547: Max: 0.000 0.000 0.000 +547: Mean abs: 0.000 0.000 0.000 +547: Ave len: 0.000 +547: Jacobian: MINJAC 1 MAXJAC 1 +547: Energy: MINDIL 0 MAXDIL 0 +547: MAXSTRAIN 0 TOTSTRAIN 0 +547: Second derivatives: MINSECDER 0 MAXSECDER 0 +547: AVESECDER 0 INTSECDER 0 +547: Max second derivative at: (1 1 1) +547: +547: STDERR: +525: RETVAL: 0 +525: STDOUT: MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872 +525: +525: STDERR: 576: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 576: PARMS is wed;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a.txt 576: EXPECTED_ERRNO is -554: RETVAL: 0 -554: STDOUT: -554: STDERR: -554: Not an error -342/578 Test #554: xf-invert-vrs-b ....................... Passed 0.43 sec +547: Not an error +525: Not an error +522: RETVAL: 0 +522: STDOUT: MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872 +522: +522: STDERR: +342/578 Test #547: xf-invert-vf-zero-1-stats ............. Passed 0.36 sec test 16 Start 16: gauss-7 16: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-7" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 16: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 16: Test timeout computed to be: 1500 -550: RETVAL: 0 -550: STDOUT: Min: -10.000 0.000 0.000 -550: Mean: -9.999 0.000 0.000 -550: Max: -9.963 0.000 0.000 -550: Mean abs: 9.999 0.000 0.000 -550: Ave len: 9.999 -550: Jacobian: MINJAC 0.998589 MAXJAC 1 -550: Energy: MINDIL -0.00141 MAXDIL 3.62396e-08 -550: MAXSTRAIN 3.62e-08 TOTSTRAIN -2.78625 -550: Second derivatives: MINSECDER 0 MAXSECDER 2.19e-06 -550: AVESECDER 5.23e-08 INTSECDER 6.54 -550: Max second derivative at: (2 1 1) -550: -550: STDERR: -550: Not an error -343/578 Test #550: xf-invert-vf-trans-1-stats ............ Passed 0.49 sec +574: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +574: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt +574: EXPECTED_ERRNO is +343/578 Test #525: plm-warp-i-stats-1 .................... Passed 0.54 sec test 23 Start 23: gw-lung-a 23: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 23: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 23: Test timeout computed to be: 1500 -16: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -16: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20 -16: EXPECTED_ERRNO is -525: RETVAL: 0 -525: STDOUT: MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872 -525: -525: STDERR: -525: Not an error -344/578 Test #525: plm-warp-i-stats-1 .................... Passed 0.76 sec +522: Not an error +541: RETVAL: 0 +541: STDOUT: Min: 20.000 0.000 0.000 +541: Mean: 20.000 0.000 0.000 +541: Max: 20.000 0.000 0.000 +541: Mean abs: 20.000 0.000 0.000 +541: Ave len: 20.000 +541: Jacobian: MINJAC 1 MAXJAC 1 +541: Energy: MINDIL 0 MAXDIL 0 +541: MAXSTRAIN 0 TOTSTRAIN 0 +541: Second derivatives: MINSECDER 0 MAXSECDER 0 +541: AVESECDER 0 INTSECDER 0 +541: Max second derivative at: (1 1 1) +541: +541: STDERR: +344/578 Test #522: plm-warp-h-stats-1 .................... Passed 0.57 sec test 24 Start 24: gw-lung-b 24: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 24: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 24: Test timeout computed to be: 1500 -547: RETVAL: 0 -547: STDOUT: Min: 0.000 0.000 0.000 -547: Mean: 0.000 0.000 0.000 -547: Max: 0.000 0.000 0.000 -547: Mean abs: 0.000 0.000 0.000 -547: Ave len: 0.000 -547: Jacobian: MINJAC 1 MAXJAC 1 -547: Energy: MINDIL 0 MAXDIL 0 -547: MAXSTRAIN 0 TOTSTRAIN 0 -547: Second derivatives: MINSECDER 0 MAXSECDER 0 -547: AVESECDER 0 INTSECDER 0 -547: Max second derivative at: (1 1 1) -547: -547: STDERR: -547: Not an error -23: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -23: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5 -23: EXPECTED_ERRNO is -552: RETVAL: 0 -552: STDOUT: -552: STDERR: -345/578 Test #547: xf-invert-vf-zero-1-stats ............. Passed 0.56 sec +16: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +16: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20 +16: EXPECTED_ERRNO is +541: Not an error +345/578 Test #541: plm-xf-convert-h-stats ................ Passed 0.52 sec test 25 Start 25: gw-lung-c 25: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 25: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 25: Test timeout computed to be: 1500 +23: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +23: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5 +23: EXPECTED_ERRNO is +24: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +24: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0 +24: EXPECTED_ERRNO is +25: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +25: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5 +25: EXPECTED_ERRNO is +554: RETVAL: 0 +554: STDOUT: +554: STDERR: +554: Not an error +552: RETVAL: 0 +552: STDOUT: +552: STDERR: 552: Not an error -346/578 Test #552: xf-invert-vrs-a ....................... Passed 0.53 sec +346/578 Test #554: xf-invert-vrs-b ....................... Passed 0.42 sec test 26 Start 26: pat-1 26: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=pat-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--pattern;rect;--dim;30 30 30;--background;-1000;--foreground;0;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;10 10 10;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/pat-1-dicom;--filenames-without-uids;--patient-id;PATIENT-ID;--patient-name;NAME^PATIENT;--series-description;Series Description Here" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 26: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 26: Test timeout computed to be: 1500 -24: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -24: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0 -24: EXPECTED_ERRNO is -26: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -26: PARMS is synth;--pattern;rect;--dim;30 30 30;--background;-1000;--foreground;0;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;10 10 10;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/pat-1-dicom;--filenames-without-uids;--patient-id;PATIENT-ID;--patient-name;NAME^PATIENT;--series-description;Series Description Here -26: EXPECTED_ERRNO is -25: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -25: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5 -25: EXPECTED_ERRNO is -557: RETVAL: 0 -557: STDOUT: MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000 -557: -557: STDERR: -557: Not an error -347/578 Test #557: proton-dose-1-stats ................... Passed 0.54 sec +550: RETVAL: 0 +550: STDOUT: Min: -10.000 0.000 0.000 +550: Mean: -9.999 0.000 0.000 +550: Max: -9.963 0.000 0.000 +550: Mean abs: 9.999 0.000 0.000 +550: Ave len: 9.999 +550: Jacobian: MINJAC 0.998589 MAXJAC 1 +550: Energy: MINDIL -0.00141 MAXDIL 3.62396e-08 +550: MAXSTRAIN 3.62e-08 TOTSTRAIN -2.78625 +550: Second derivatives: MINSECDER 0 MAXSECDER 2.19e-06 +550: AVESECDER 5.23e-08 INTSECDER 6.54 +550: Max second derivative at: (2 1 1) +550: +550: STDERR: +550: Not an error +347/578 Test #550: xf-invert-vf-trans-1-stats ............ Passed 0.45 sec test 35 Start 35: rect-6 35: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-6" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;0 -300 -200;--direction-cosines;rotated-2" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 35: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 35: Test timeout computed to be: 1500 -544: RETVAL: 0 -544: STDOUT: Min: 7.161 -0.245 -0.245 -544: Mean: 8.546 0.041 0.041 -544: Max: 9.698 0.313 0.313 -544: Mean abs: 8.546 0.144 0.144 -544: Ave len: 8.549 -544: Jacobian: MINJAC 0.996419 MAXJAC 1.00089 -544: Energy: MINDIL -0.00359 MAXDIL 0.00089729 -544: MAXSTRAIN 0.000899 TOTSTRAIN -0.0111365 -544: Second derivatives: MINSECDER 6.15e-05 MAXSECDER 8.87e-05 -544: AVESECDER 9.37e-06 INTSECDER 1.17e+03 -544: Max second derivative at: (1 1 1) -544: -544: STDERR: -544: Not an error -348/578 Test #544: plm-xf-convert-i-stats ................ Passed 0.68 sec +348/578 Test #552: xf-invert-vrs-a ....................... Passed 0.45 sec test 36 Start 36: rect-7 36: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-7" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;100 300 -100;--direction-cosines;rotated-3" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 36: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 36: Test timeout computed to be: 1500 -569: RETVAL: 0 -569: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000 -569: -569: STDERR: -569: Not an error -349/578 Test #569: proton-dose-5d-stats .................. Passed 0.42 sec -test 41 - Start 41: rect-10-roi-2 - -41: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10-roi-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -41: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -41: Test timeout computed to be: 1500 35: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 35: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;0 -300 -200;--direction-cosines;rotated-2 35: EXPECTED_ERRNO is +26: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +26: PARMS is synth;--pattern;rect;--dim;30 30 30;--background;-1000;--foreground;0;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;10 10 10;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/pat-1-dicom;--filenames-without-uids;--patient-id;PATIENT-ID;--patient-name;NAME^PATIENT;--series-description;Series Description Here +26: EXPECTED_ERRNO is 36: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 36: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;100 300 -100;--direction-cosines;rotated-3 36: EXPECTED_ERRNO is -41: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -41: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60 -41: EXPECTED_ERRNO is -566: RETVAL: 0 -566: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000 -566: -566: STDERR: -566: Not an error -350/578 Test #566: proton-dose-5a-stats .................. Passed 0.50 sec +16: RETVAL: 0 +16: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha +16: +16: STDERR: +16: Not an error +349/578 Test #16: gauss-7 ............................... Passed 0.27 sec +test 41 + Start 41: rect-10-roi-2 + +41: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10-roi-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +41: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +41: Test timeout computed to be: 1500 +557: RETVAL: 0 +557: STDOUT: MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000 +557: +557: STDERR: +557: Not an error +350/578 Test #557: proton-dose-1-stats ................... Passed 0.49 sec test 50 Start 50: rect-18 50: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-18" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 50: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 50: Test timeout computed to be: 1500 -50: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -50: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20 -50: EXPECTED_ERRNO is -572: RETVAL: 0 -572: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000 -572: -572: STDERR: -572: Not an error -351/578 Test #572: proton-dose-6a-stats .................. Passed 0.51 sec +566: RETVAL: 0 +566: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000 +566: +566: STDERR: +566: Not an error +41: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +41: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60 +41: EXPECTED_ERRNO is +351/578 Test #566: proton-dose-5a-stats .................. Passed 0.41 sec test 60 Start 60: rgc-1 60: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rgc-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 60: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 60: Test timeout computed to be: 1500 -560: RETVAL: 0 -560: STDOUT: MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000 -560: -560: STDERR: -560: Not an error -352/578 Test #560: proton-dose-4a-stats .................. Passed 0.64 sec +50: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +50: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20 +50: EXPECTED_ERRNO is +60: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +60: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1 +60: EXPECTED_ERRNO is +23: RETVAL: 0 +23: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha +23: +23: STDERR: +23: Not an error +569: RETVAL: 0 +569: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000 +569: +569: STDERR: +352/578 Test #23: gw-lung-a ............................. Passed 0.36 sec test 69 Start 69: xramp-1 69: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xramp-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 69: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 69: Test timeout computed to be: 1500 -60: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -60: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1 -60: EXPECTED_ERRNO is -69: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -69: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38 -69: EXPECTED_ERRNO is -25: RETVAL: 0 -25: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha -25: -25: STDERR: -25: Not an error -353/578 Test #25: gw-lung-c ............................. Passed 0.39 sec +569: Not an error +353/578 Test #569: proton-dose-5d-stats .................. Passed 0.46 sec test 70 Start 70: yramp-1 70: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=yramp-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha;--output-type;float;--pattern;yramp;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 70: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 70: Test timeout computed to be: 1500 -23: RETVAL: 0 -23: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha -23: -23: STDERR: -23: Not an error -24: RETVAL: 0 -24: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha -24: -24: STDERR: -24: Not an error -354/578 Test #23: gw-lung-a ............................. Passed 0.46 sec +563: RETVAL: 0 +563: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000 +563: +563: STDERR: +572: RETVAL: 0 +572: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000 +572: +572: STDERR: +572: Not an error +560: RETVAL: 0 +560: STDOUT: MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000 +560: +560: STDERR: +560: Not an error +563: Not an error +354/578 Test #572: proton-dose-6a-stats .................. Passed 0.47 sec test 71 Start 71: zramp-1 71: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=zramp-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha;--output-type;float;--pattern;zramp;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 71: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 71: Test timeout computed to be: 1500 -355/578 Test #24: gw-lung-b ............................. Passed 0.45 sec +69: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +69: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38 +69: EXPECTED_ERRNO is +355/578 Test #560: proton-dose-4a-stats .................. Passed 0.56 sec test 76 Start 76: vf-gaussian-1 76: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-gaussian-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha;--xf-gauss;--gauss-center;0 0 0;--gauss-mag;10 20 0;--gauss-std;100 100 100;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 76: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 76: Test timeout computed to be: 1500 +356/578 Test #563: proton-dose-4d-stats .................. Passed 0.54 sec +test 78 + Start 78: vf-zero-check + +78: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +78: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +78: Test timeout computed to be: 1500 70: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 70: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha;--output-type;float;--pattern;yramp;--dim;38 38 38 70: EXPECTED_ERRNO is 71: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 71: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha;--output-type;float;--pattern;zramp;--dim;38 38 38 71: EXPECTED_ERRNO is +24: RETVAL: 0 +24: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha +24: +24: STDERR: 76: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 76: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha;--xf-gauss;--gauss-center;0 0 0;--gauss-mag;10 20 0;--gauss-std;100 100 100;--dim;38 38 38 76: EXPECTED_ERRNO is -36: RETVAL: 0 -36: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha -36: -36: STDERR: -36: Not an error -356/578 Test #36: rect-7 ................................ Passed 0.40 sec -test 78 - Start 78: vf-zero-check - -78: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -78: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -78: Test timeout computed to be: 1500 -16: RETVAL: 0 -16: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha -16: -16: STDERR: -16: Not an error -357/578 Test #16: gauss-7 ............................... Passed 0.59 sec +24: Not an error +357/578 Test #24: gw-lung-b ............................. Passed 0.42 sec test 80 Start 80: vf-trans-1-check 80: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 80: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 80: Test timeout computed to be: 1500 +25: RETVAL: 0 +25: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha +25: +25: STDERR: +25: Not an error 78: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt 78: -- REGEX is Mean abs: *([-0-9.]*) 78: -- LOWER_THRESH is 0.000 @@ -16358,6 +16722,13 @@ 78: -- PARSED VALUE=|Mean abs: 0.000 0.000 0.000| 78: -- PARSED_VALUE=|0.000| 78: Not an error +358/578 Test #25: gw-lung-c ............................. Passed 0.42 sec +test 82 + Start 82: vf-trans-2-check + +82: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt" "-DREGEX=Mean: *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +82: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +82: Test timeout computed to be: 1500 80: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1-stats.stdout.txt 80: -- REGEX is Mean: *([-0-9.]*) 80: -- LOWER_THRESH is 10.000 @@ -16365,108 +16736,212 @@ 80: -- PARSED VALUE=|Mean: 10.000 0.000 0.000| 80: -- PARSED_VALUE=|10.000| 80: Not an error -358/578 Test #78: vf-zero-check ......................... Passed 0.07 sec -test 82 - Start 82: vf-trans-2-check - -82: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt" "-DREGEX=Mean: *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -82: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -82: Test timeout computed to be: 1500 -50: RETVAL: 0 -50: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha -50: -50: STDERR: -359/578 Test #80: vf-trans-1-check ...................... Passed 0.07 sec +359/578 Test #78: vf-zero-check ......................... Passed 0.07 sec test 84 Start 84: vf-radial-1-check 84: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=5.15" "-DUPPER_THRESH=5.16" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 84: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 84: Test timeout computed to be: 1500 -50: Not an error -41: RETVAL: 0 -41: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha -41: -41: STDERR: -41: Not an error -69: RETVAL: 0 -69: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha -69: -69: STDERR: -69: Not an error -360/578 Test #41: rect-10-roi-2 ......................... Passed 0.50 sec +360/578 Test #80: vf-trans-1-check ...................... Passed 0.04 sec test 86 Start 86: plm-compare-a-check 86: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=7.76" "-DUPPER_THRESH=7.78" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 86: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 86: Test timeout computed to be: 1500 -361/578 Test #50: rect-18 ............................... Passed 0.46 sec +82: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt +82: -- REGEX is Mean: *[-0-9.]* *([-0-9.]*) +82: -- LOWER_THRESH is 10.000 +82: -- UPPER_THRESH is 10.000 +82: -- PARSED VALUE=|Mean: 0.000 10.000 0.000| +82: -- PARSED_VALUE=|10.000| +82: Not an error +361/578 Test #82: vf-trans-2-check ...................... Passed 0.04 sec test 88 Start 88: plm-compare-b-check 88: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 88: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 88: Test timeout computed to be: 1500 -362/578 Test #69: xramp-1 ............................... Passed 0.42 sec +84: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt +84: -- REGEX is Mean abs: *([-0-9.]*) +84: -- LOWER_THRESH is 5.15 +84: -- UPPER_THRESH is 5.16 +84: -- PARSED VALUE=|Mean abs: 5.157 5.157 5.157| +84: -- PARSED_VALUE=|5.157| +84: Not an error +86: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt +86: -- REGEX is AVE *([-0-9.]*) +86: -- LOWER_THRESH is 7.76 +86: -- UPPER_THRESH is 7.78 +86: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786| +86: -- PARSED_VALUE=|7.769665| +86: Not an error +362/578 Test #84: vf-radial-1-check ..................... Passed 0.04 sec test 90 Start 90: plm-compare-c-check 90: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 90: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 90: Test timeout computed to be: 1500 -82: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt -82: -- REGEX is Mean: *[-0-9.]* *([-0-9.]*) -82: -- LOWER_THRESH is 10.000 -82: -- UPPER_THRESH is 10.000 -82: -- PARSED VALUE=|Mean: 0.000 10.000 0.000| -82: -- PARSED_VALUE=|10.000| -82: Not an error -363/578 Test #82: vf-trans-2-check ...................... Passed 0.10 sec +35: RETVAL: 0 +35: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha +35: +35: STDERR: +35: Not an error +363/578 Test #86: plm-compare-a-check ................... Passed 0.04 sec test 93 Start 93: plm-diff-a-check 93: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=7.76" "-DUPPER_THRESH=7.78" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 93: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 93: Test timeout computed to be: 1500 -60: RETVAL: 0 -60: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha -60: -60: STDERR: -60: Not an error -364/578 Test #60: rgc-1 ................................. Passed 0.46 sec +364/578 Test #35: rect-6 ................................ Passed 0.37 sec test 96 Start 96: plm-diff-b-check 96: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-stats.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 96: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 96: Test timeout computed to be: 1500 -84: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt -84: -- REGEX is Mean abs: *([-0-9.]*) -84: -- LOWER_THRESH is 5.15 -84: -- UPPER_THRESH is 5.16 -84: -- PARSED VALUE=|Mean abs: 5.157 5.157 5.157| -84: -- PARSED_VALUE=|5.157| -84: Not an error -365/578 Test #84: vf-radial-1-check ..................... Passed 0.11 sec +88: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt +88: -- REGEX is Ave len: *([-0-9.]*) +88: -- LOWER_THRESH is 14.141 +88: -- UPPER_THRESH is 14.143 +88: -- PARSED VALUE=|Ave len: 14.142| +88: -- PARSED_VALUE=|14.142| +88: Not an error +365/578 Test #88: plm-compare-b-check ................... Passed 0.05 sec test 98 Start 98: demons-a-check 98: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.stdout.txt" "-DREGEX=^Mean: *([0-9.]*)" "-DLOWER_THRESH=3.4" "-DUPPER_THRESH=3.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 98: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 98: Test timeout computed to be: 1500 -35: RETVAL: 0 -35: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha -35: -35: STDERR: -35: Not an error -366/578 Test #35: rect-6 ................................ Passed 0.65 sec +90: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt +90: -- REGEX is Ave len: *([-0-9.]*) +90: -- LOWER_THRESH is 14.141 +90: -- UPPER_THRESH is 14.143 +90: -- PARSED VALUE=|Ave len: 14.142| +90: -- PARSED_VALUE=|14.142| +90: Not an error +366/578 Test #90: plm-compare-c-check ................... Passed 0.05 sec test 101 Start 101: drr-a-check 101: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 101: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 101: Test timeout computed to be: 1500 +41: RETVAL: 0 +41: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha +41: +41: STDERR: +41: Not an error +367/578 Test #41: rect-10-roi-2 ......................... Passed 0.30 sec +test 104 + Start 104: drr-b-check + +104: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +104: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +104: Test timeout computed to be: 1500 +96: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-stats.stdout.txt +96: -- REGEX is Ave len: *([-0-9.]*) +96: -- LOWER_THRESH is 14.141 +96: -- UPPER_THRESH is 14.143 +96: -- PARSED VALUE=|Ave len: 14.142| +96: -- PARSED_VALUE=|14.142| +96: Not an error +93: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-stats.stdout.txt +93: -- REGEX is AVE *([-0-9.]*) +93: -- LOWER_THRESH is 7.76 +93: -- UPPER_THRESH is 7.78 +93: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872| +93: -- PARSED_VALUE=|7.769665| +93: Not an error +36: RETVAL: 0 +36: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha +36: +36: STDERR: +368/578 Test #93: plm-diff-a-check ...................... Passed 0.07 sec +test 107 + Start 107: drr-c-check + +107: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +107: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +107: Test timeout computed to be: 1500 +369/578 Test #96: plm-diff-b-check ...................... Passed 0.06 sec +test 110 + Start 110: fdk-cpu-a-check + +110: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +110: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +110: Test timeout computed to be: 1500 +36: Not an error +370/578 Test #36: rect-7 ................................ Passed 0.43 sec +test 113 + Start 113: fdk-cpu-d-check + +113: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +113: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +113: Test timeout computed to be: 1500 +98: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.stdout.txt +98: -- REGEX is ^Mean: *([0-9.]*) +98: -- LOWER_THRESH is 3.4 +98: -- UPPER_THRESH is 3.5 +98: -- PARSED VALUE=|Mean: 3.443 0.016 0.016| +98: -- PARSED_VALUE=|3.443| +98: Not an error +371/578 Test #98: demons-a-check ........................ Passed 0.06 sec +test 116 + Start 116: landmark-warp-a-check-1 + +116: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.0" "-DUPPER_THRESH=-991.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +116: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +116: Test timeout computed to be: 1500 +101: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a-stats.stdout.txt +101: -- REGEX is MAX *([-0-9.]*) +101: -- LOWER_THRESH is 0.045 +101: -- UPPER_THRESH is 0.055 +101: -- PARSED VALUE=|MIN 0.000000 AVE 0.000135 MAX 0.050109 NUM 16384| +101: -- PARSED_VALUE=|0.050109| +101: Not an error +372/578 Test #101: drr-a-check ........................... Passed 0.05 sec +test 118 + Start 118: landmark-warp-a-check-2 + +118: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-23.2" "-DUPPER_THRESH=-22.7" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +118: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +118: Test timeout computed to be: 1500 +69: RETVAL: 0 +69: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha +69: +69: STDERR: +69: Not an error +60: RETVAL: 0 +60: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha +60: +60: STDERR: +104: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b-stats.stdout.txt +104: -- REGEX is MAX *([-0-9.]*) +104: -- LOWER_THRESH is 0.045 +104: -- UPPER_THRESH is 0.055 +373/578 Test #69: xramp-1 ............................... Passed 0.26 sec +test 121 + Start 121: landmark-warp-b-check-1 + +121: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.2" "-DUPPER_THRESH=-991.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +121: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +121: Test timeout computed to be: 1500 +104: -- PARSED VALUE=|MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384| +104: -- PARSED_VALUE=|0.049634| +104: Not an error +26: RETVAL: 0 +26: STDOUT: Doing extraction +26: Keyholizing structure 0. +26: Write: DoseGridScaling = 0.000000 +26: +26: STDERR: +60: Not an error 574: RETVAL: 0 574: STDOUT: 574: [PLAN] @@ -16525,105 +17000,37 @@ 574: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 574: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha 574: Sigma: 0.000000 seconds -574: Calc: 0.192929 seconds -574: IO: 0.137075 seconds -574: Reformat: 0.038194 seconds -574: Misc: 0.013162 seconds +574: Calc: 0.131738 seconds +574: IO: 0.112686 seconds +574: Reformat: 0.030612 seconds +574: Misc: 0.005614 seconds 574: done. 574: -574: Total execution time : 0.381695 seconds. +574: Total execution time : 0.280938 seconds. 574: 574: STDERR: -574: Not an error -367/578 Test #574: proton-dose-8d ........................ Passed 0.97 sec -test 104 - Start 104: drr-b-check - -104: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -104: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -104: Test timeout computed to be: 1500 -86: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt -86: -- REGEX is AVE *([-0-9.]*) -86: -- LOWER_THRESH is 7.76 -86: -- UPPER_THRESH is 7.78 -86: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786| -86: -- PARSED_VALUE=|7.769665| -86: Not an error -368/578 Test #86: plm-compare-a-check ................... Passed 0.11 sec -test 107 - Start 107: drr-c-check +374/578 Test #60: rgc-1 ................................. Passed 0.33 sec +test 123 + Start 123: landmark-warp-b-check-2 -107: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -107: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -107: Test timeout computed to be: 1500 -88: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt -88: -- REGEX is Ave len: *([-0-9.]*) -88: -- LOWER_THRESH is 14.141 -88: -- UPPER_THRESH is 14.143 -88: -- PARSED VALUE=|Ave len: 14.142| -88: -- PARSED_VALUE=|14.142| -88: Not an error -369/578 Test #88: plm-compare-b-check ................... Passed 0.11 sec -test 110 - Start 110: fdk-cpu-a-check +123: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-1.55" "-DUPPER_THRESH=-1.4" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +123: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +123: Test timeout computed to be: 1500 +375/578 Test #104: drr-b-check ........................... Passed 0.06 sec +test 126 + Start 126: landmark-warp-c-check-1 -110: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -110: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -110: Test timeout computed to be: 1500 +126: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.0" "-DUPPER_THRESH=-991.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +126: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +126: Test timeout computed to be: 1500 +50: RETVAL: 0 +50: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha +50: +50: STDERR: 70: RETVAL: 0 70: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha 70: 70: STDERR: -70: Not an error -90: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt -90: -- REGEX is Ave len: *([-0-9.]*) -90: -- LOWER_THRESH is 14.141 -90: -- UPPER_THRESH is 14.143 -90: -- PARSED VALUE=|Ave len: 14.142| -90: -- PARSED_VALUE=|14.142| -90: Not an error -93: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-stats.stdout.txt -93: -- REGEX is AVE *([-0-9.]*) -93: -- LOWER_THRESH is 7.76 -93: -- UPPER_THRESH is 7.78 -93: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872| -93: -- PARSED_VALUE=|7.769665| -93: Not an error -98: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.stdout.txt -98: -- REGEX is ^Mean: *([0-9.]*) -98: -- LOWER_THRESH is 3.4 -98: -- UPPER_THRESH is 3.5 -98: -- PARSED VALUE=|Mean: 3.443 0.016 0.016| -98: -- PARSED_VALUE=|3.443| -98: Not an error -26: RETVAL: 0 -26: STDOUT: Doing extraction -26: Keyholizing structure 0. -26: Write: DoseGridScaling = 0.000000 -26: -26: STDERR: -26: Not an error -96: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-stats.stdout.txt -96: -- REGEX is Ave len: *([-0-9.]*) -96: -- LOWER_THRESH is 14.141 -96: -- UPPER_THRESH is 14.143 -96: -- PARSED VALUE=|Ave len: 14.142| -96: -- PARSED_VALUE=|14.142| -96: Not an error -101: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a-stats.stdout.txt -101: -- REGEX is MAX *([-0-9.]*) -101: -- LOWER_THRESH is 0.045 -101: -- UPPER_THRESH is 0.055 -101: -- PARSED VALUE=|MIN 0.000000 AVE 0.000135 MAX 0.050109 NUM 16384| -101: -- PARSED_VALUE=|0.050109| -101: Not an error -104: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b-stats.stdout.txt -104: -- REGEX is MAX *([-0-9.]*) -104: -- LOWER_THRESH is 0.045 -104: -- UPPER_THRESH is 0.055 -104: -- PARSED VALUE=|MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384| -104: -- PARSED_VALUE=|0.049634| -104: Not an error 107: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c-stats.stdout.txt 107: -- REGEX is MAX *([-0-9.]*) 107: -- LOWER_THRESH is 0.045 @@ -16631,155 +17038,131 @@ 107: -- PARSED VALUE=|MIN 0.000000 AVE 0.000125 MAX 0.050494 NUM 16384| 107: -- PARSED_VALUE=|0.050494| 107: Not an error -370/578 Test #26: pat-1 ................................. Passed 0.76 sec -test 113 - Start 113: fdk-cpu-d-check - -113: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -113: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -113: Test timeout computed to be: 1500 -371/578 Test #70: yramp-1 ............................... Passed 0.39 sec -test 116 - Start 116: landmark-warp-a-check-1 - -116: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.0" "-DUPPER_THRESH=-991.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -116: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -116: Test timeout computed to be: 1500 -372/578 Test #90: plm-compare-c-check ................... Passed 0.12 sec -test 118 - Start 118: landmark-warp-a-check-2 - -118: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-23.2" "-DUPPER_THRESH=-22.7" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -118: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -118: Test timeout computed to be: 1500 -373/578 Test #93: plm-diff-a-check ...................... Passed 0.12 sec -test 121 - Start 121: landmark-warp-b-check-1 - -121: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.2" "-DUPPER_THRESH=-991.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -121: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -121: Test timeout computed to be: 1500 -374/578 Test #96: plm-diff-b-check ...................... Passed 0.11 sec -test 123 - Start 123: landmark-warp-b-check-2 - -123: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-1.55" "-DUPPER_THRESH=-1.4" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -123: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -123: Test timeout computed to be: 1500 -375/578 Test #98: demons-a-check ........................ Passed 0.12 sec -test 126 - Start 126: landmark-warp-c-check-1 - -126: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.0" "-DUPPER_THRESH=-991.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -126: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -126: Test timeout computed to be: 1500 -376/578 Test #104: drr-b-check ........................... Passed 0.09 sec +376/578 Test #107: drr-c-check ........................... Passed 0.05 sec test 128 Start 128: landmark-warp-c-check-2 128: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-1.6" "-DUPPER_THRESH=-1.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 128: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 128: Test timeout computed to be: 1500 -377/578 Test #101: drr-a-check ........................... Passed 0.12 sec +26: Not an error +118: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-2.stdout.txt +118: -- REGEX is Mean: *([-0-9.]*) +118: -- LOWER_THRESH is -23.2 +118: -- UPPER_THRESH is -22.7 +118: -- PARSED VALUE=|Mean: -22.960 0.011 0.000| +118: -- PARSED_VALUE=|-22.960| +118: Not an error +377/578 Test #26: pat-1 ................................. Passed 0.50 sec test 129 Start 129: landmark-warp-d 129: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;tps;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha;-L;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 129: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 129: Test timeout computed to be: 1500 -378/578 Test #107: drr-c-check ........................... Passed 0.10 sec +70: Not an error +378/578 Test #118: landmark-warp-a-check-2 ............... Passed 0.04 sec test 132 Start 132: plm-add-a-check 132: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1000.1" "-DUPPER_THRESH=-999.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 132: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 132: Test timeout computed to be: 1500 -76: RETVAL: 0 -76: STDOUT: Setting header -76: Origin = -243.4211 -243.4211 -243.4211 -76: Size = 38 38 38 -76: Spacing = 13.1579 13.1579 13.1579 -76: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -76: Header was set -76: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha -76: -76: STDERR: -76: Not an error -379/578 Test #76: vf-gaussian-1 ......................... Passed 0.42 sec +379/578 Test #70: yramp-1 ............................... Passed 0.29 sec test 135 Start 135: plm-add-b-check 135: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-500.1" "-DUPPER_THRESH=-499.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 135: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 135: Test timeout computed to be: 1500 -110: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a-stats.stdout.txt -110: -- REGEX is MAX *([-0-9.]*) -110: -- LOWER_THRESH is -987.5 -110: -- UPPER_THRESH is -986.5 -110: -- PARSED VALUE=|MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600| -110: -- PARSED_VALUE=|-987.021973| -110: Not an error -380/578 Test #110: fdk-cpu-a-check ....................... Passed 0.12 sec +574: Not an error +71: RETVAL: 0 +71: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha +71: +71: STDERR: +71: Not an error +380/578 Test #574: proton-dose-8d ........................ Passed 0.72 sec test 138 Start 138: plm-add-vf-a-check 138: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=20.000" "-DUPPER_THRESH=20.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 138: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 138: Test timeout computed to be: 1500 -71: RETVAL: 0 -71: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha -71: -71: STDERR: -71: Not an error -381/578 Test #71: zramp-1 ............................... Passed 0.47 sec +50: Not an error +381/578 Test #71: zramp-1 ............................... Passed 0.28 sec test 141 Start 141: plm-add-vf-b-check 141: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.000" "-DUPPER_THRESH=5.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 141: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 141: Test timeout computed to be: 1500 -113: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt -113: -- REGEX is MAX *([-0-9.]*) -113: -- LOWER_THRESH is -987.5 -113: -- UPPER_THRESH is -986.5 -113: -- PARSED VALUE=|MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600| -113: -- PARSED_VALUE=|-987.021973| -113: Not an error -382/578 Test #113: fdk-cpu-d-check ....................... Passed 0.12 sec +382/578 Test #50: rect-18 ............................... Passed 0.39 sec test 144 Start 144: plm-adjust-a-check 144: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 144: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 144: Test timeout computed to be: 1500 -116: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-1.stdout.txt -116: -- REGEX is AVE *([-0-9.]*) -116: -- LOWER_THRESH is -992.0 -116: -- UPPER_THRESH is -991.5 -116: -- PARSED VALUE=|MIN -1000.000000 AVE -991.799744 MAX 0.000000 NONZERO 54494 NUMVOX 54872| -116: -- PARSED_VALUE=|-991.799744| -116: Not an error -383/578 Test #116: landmark-warp-a-check-1 ............... Passed 0.12 sec +110: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a-stats.stdout.txt +110: -- REGEX is MAX *([-0-9.]*) +110: -- LOWER_THRESH is -987.5 +110: -- UPPER_THRESH is -986.5 +110: -- PARSED VALUE=|MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600| +110: -- PARSED_VALUE=|-987.021973| +110: Not an error +383/578 Test #110: fdk-cpu-a-check ....................... Passed 0.09 sec test 147 Start 147: plm-adjust-b-check 147: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 147: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 147: Test timeout computed to be: 1500 -118: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-2.stdout.txt -118: -- REGEX is Mean: *([-0-9.]*) -118: -- LOWER_THRESH is -23.2 -118: -- UPPER_THRESH is -22.7 -118: -- PARSED VALUE=|Mean: -22.960 0.011 0.000| -118: -- PARSED_VALUE=|-22.960| -118: Not an error -384/578 Test #118: landmark-warp-a-check-2 ............... Passed 0.12 sec +123: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-2.stdout.txt +123: -- REGEX is Mean: *([-0-9.]*) +123: -- LOWER_THRESH is -1.55 +123: -- UPPER_THRESH is -1.4 +123: -- PARSED VALUE=|Mean: -1.500 0.018 0.000| +123: -- PARSED_VALUE=|-1.500| +123: Not an error +135: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b-stats.stdout.txt +135: -- REGEX is AVE *([-0-9.]*) +135: -- LOWER_THRESH is -500.1 +135: -- UPPER_THRESH is -499.9 +135: -- PARSED VALUE=|MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872| +135: -- PARSED_VALUE=|-500.000000| +135: Not an error +138: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt +138: -- REGEX is Mean: *([-0-9.]*) +138: -- LOWER_THRESH is 20.000 +138: -- UPPER_THRESH is 20.000 +138: -- PARSED VALUE=|Mean: 20.000 0.000 0.000| +138: -- PARSED_VALUE=|20.000| +138: Not an error +384/578 Test #123: landmark-warp-b-check-2 ............... Passed 0.06 sec test 150 Start 150: plm-adjust-c-check 150: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 150: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 150: Test timeout computed to be: 1500 +76: RETVAL: 0 +76: STDOUT: Setting header +76: Origin = -243.4211 -243.4211 -243.4211 +76: Size = 38 38 38 +76: Spacing = 13.1579 13.1579 13.1579 +76: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +76: Header was set +76: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha +76: +76: STDERR: +76: Not an error +132: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a-stats.stdout.txt +132: -- REGEX is AVE *([-0-9.]*) +132: -- LOWER_THRESH is -1000.1 +132: -- UPPER_THRESH is -999.9 +132: -- PARSED VALUE=|MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872| +132: -- PARSED_VALUE=|-1000.000000| +132: Not an error 121: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-1.stdout.txt 121: -- REGEX is AVE *([-0-9.]*) 121: -- LOWER_THRESH is -992.2 @@ -16787,13 +17170,30 @@ 121: -- PARSED VALUE=|MIN -1000.000122 AVE -992.005493 MAX 0.000000 NONZERO 54512 NUMVOX 54872| 121: -- PARSED_VALUE=|-992.005493| 121: Not an error -385/578 Test #121: landmark-warp-b-check-1 ............... Passed 0.11 sec -test 153 - Start 153: plm-adjust-d-check - -153: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-782.97" "-DUPPER_THRESH=-782.96" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -153: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -153: Test timeout computed to be: 1500 +141: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b-stats.stdout.txt +141: -- REGEX is Mean: *([-0-9.]*) +141: -- LOWER_THRESH is 5.000 +141: -- UPPER_THRESH is 5.000 +141: -- PARSED VALUE=|Mean: 5.000 5.000 0.000| +141: -- PARSED_VALUE=|5.000| +141: Not an error +129: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +129: PARMS is lm-warp;-a;tps;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha;-L;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv +129: EXPECTED_ERRNO is +116: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-1.stdout.txt +116: -- REGEX is AVE *([-0-9.]*) +116: -- LOWER_THRESH is -992.0 +116: -- UPPER_THRESH is -991.5 +116: -- PARSED VALUE=|MIN -1000.000000 AVE -991.799744 MAX 0.000000 NONZERO 54494 NUMVOX 54872| +116: -- PARSED_VALUE=|-991.799744| +116: Not an error +113: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt +113: -- REGEX is MAX *([-0-9.]*) +113: -- LOWER_THRESH is -987.5 +113: -- UPPER_THRESH is -986.5 +113: -- PARSED VALUE=|MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600| +113: -- PARSED_VALUE=|-987.021973| +113: Not an error 126: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-1.stdout.txt 126: -- REGEX is AVE *([-0-9.]*) 126: -- LOWER_THRESH is -992.0 @@ -16801,100 +17201,69 @@ 126: -- PARSED VALUE=|MIN -1000.000122 AVE -991.665894 MAX 0.000000 NONZERO 54484 NUMVOX 54872| 126: -- PARSED_VALUE=|-991.665894| 126: Not an error -386/578 Test #126: landmark-warp-c-check-1 ............... Passed 0.09 sec +385/578 Test #135: plm-add-b-check ....................... Passed 0.04 sec +test 153 + Start 153: plm-adjust-d-check + +153: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-782.97" "-DUPPER_THRESH=-782.96" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +153: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +153: Test timeout computed to be: 1500 +386/578 Test #138: plm-add-vf-a-check .................... Passed 0.04 sec test 156 Start 156: plm-adjust-e-check 156: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1298.87" "-DUPPER_THRESH=-1298.86" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 156: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 156: Test timeout computed to be: 1500 -123: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-2.stdout.txt -123: -- REGEX is Mean: *([-0-9.]*) -123: -- LOWER_THRESH is -1.55 -123: -- UPPER_THRESH is -1.4 -123: -- PARSED VALUE=|Mean: -1.500 0.018 0.000| -123: -- PARSED_VALUE=|-1.500| -123: Not an error -387/578 Test #123: landmark-warp-b-check-2 ............... Passed 0.12 sec +387/578 Test #132: plm-add-a-check ....................... Passed 0.05 sec test 159 Start 159: plm-adjust-f-check 159: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.0196" "-DUPPER_THRESH=-0.0195" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 159: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 159: Test timeout computed to be: 1500 -128: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-2.stdout.txt -128: -- REGEX is Mean: *([-0-9.]*) -128: -- LOWER_THRESH is -1.6 -128: -- UPPER_THRESH is -1.5 -128: -- PARSED VALUE=|Mean: -1.562 0.019 0.000| -128: -- PARSED_VALUE=|-1.562| -128: Not an error -388/578 Test #128: landmark-warp-c-check-2 ............... Passed 0.11 sec +388/578 Test #121: landmark-warp-b-check-1 ............... Passed 0.09 sec test 162 Start 162: plm-adjust-g-check 162: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.0001" "-DUPPER_THRESH=0.0001" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 162: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 162: Test timeout computed to be: 1500 -129: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -129: PARMS is lm-warp;-a;tps;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha;-L;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv -129: EXPECTED_ERRNO is -132: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a-stats.stdout.txt -132: -- REGEX is AVE *([-0-9.]*) -132: -- LOWER_THRESH is -1000.1 -132: -- UPPER_THRESH is -999.9 -132: -- PARSED VALUE=|MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872| -132: -- PARSED_VALUE=|-1000.000000| -132: Not an error -389/578 Test #132: plm-add-a-check ....................... Passed 0.09 sec +389/578 Test #141: plm-add-vf-b-check .................... Passed 0.04 sec test 165 Start 165: plm-adjust-h-check 165: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.2481" "-DUPPER_THRESH=-0.248" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 165: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 165: Test timeout computed to be: 1500 -135: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b-stats.stdout.txt -135: -- REGEX is AVE *([-0-9.]*) -135: -- LOWER_THRESH is -500.1 -135: -- UPPER_THRESH is -499.9 -135: -- PARSED VALUE=|MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872| -135: -- PARSED_VALUE=|-500.000000| -135: Not an error -390/578 Test #135: plm-add-b-check ....................... Passed 0.10 sec +390/578 Test #116: landmark-warp-a-check-1 ............... Passed 0.11 sec test 168 Start 168: plm-adjust-i-check 168: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-921.5941" "-DUPPER_THRESH=-921.5940" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 168: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 168: Test timeout computed to be: 1500 -138: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt -138: -- REGEX is Mean: *([-0-9.]*) -138: -- LOWER_THRESH is 20.000 -138: -- UPPER_THRESH is 20.000 -138: -- PARSED VALUE=|Mean: 20.000 0.000 0.000| -138: -- PARSED_VALUE=|20.000| -138: Not an error -391/578 Test #138: plm-add-vf-a-check .................... Passed 0.09 sec +391/578 Test #113: fdk-cpu-d-check ....................... Passed 0.12 sec test 171 Start 171: plm-adjust-j-check 171: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-921.6276" "-DUPPER_THRESH=-921.6274" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 171: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 171: Test timeout computed to be: 1500 -141: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b-stats.stdout.txt -141: -- REGEX is Mean: *([-0-9.]*) -141: -- LOWER_THRESH is 5.000 -141: -- UPPER_THRESH is 5.000 -141: -- PARSED VALUE=|Mean: 5.000 5.000 0.000| -141: -- PARSED_VALUE=|5.000| -141: Not an error -392/578 Test #141: plm-add-vf-b-check .................... Passed 0.08 sec +392/578 Test #126: landmark-warp-c-check-1 ............... Passed 0.09 sec test 174 Start 174: plm-boundary-a-check 174: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1056" "-DUPPER_THRESH=1056" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 174: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 174: Test timeout computed to be: 1500 +393/578 Test #76: vf-gaussian-1 ......................... Passed 0.34 sec +test 177 + Start 177: plm-boundary-b-check + +177: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1056" "-DUPPER_THRESH=1056" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +177: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +177: Test timeout computed to be: 1500 144: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a-stats.stdout.txt 144: -- REGEX is AVE *([-0-9.]*) 144: -- LOWER_THRESH is -819.55 @@ -16902,97 +17271,90 @@ 144: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| 144: -- PARSED_VALUE=|-819.546265| 144: Not an error -147: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt -147: -- REGEX is AVE *([-0-9.]*) -147: -- LOWER_THRESH is -819.55 -147: -- UPPER_THRESH is -819.54 -147: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| -147: -- PARSED_VALUE=|-819.546265| -147: Not an error -150: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c-stats.stdout.txt -150: -- REGEX is AVE *([-0-9.]*) -150: -- LOWER_THRESH is -819.55 -150: -- UPPER_THRESH is -819.54 -150: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| -150: -- PARSED_VALUE=|-819.546265| -150: Not an error -153: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt -153: -- REGEX is AVE *([-0-9.]*) -153: -- LOWER_THRESH is -782.97 -153: -- UPPER_THRESH is -782.96 -153: -- PARSED VALUE=|MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872| -153: -- PARSED_VALUE=|-782.961060| -153: Not an error -156: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e-stats.stdout.txt -156: -- REGEX is AVE *([-0-9.]*) -156: -- LOWER_THRESH is -1298.87 -156: -- UPPER_THRESH is -1298.86 -156: -- PARSED VALUE=|MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872| -156: -- PARSED_VALUE=|-1298.865601| -156: Not an error -159: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f-stats.stdout.txt -159: -- REGEX is AVE *([-0-9.]*) -159: -- LOWER_THRESH is -0.0196 -159: -- UPPER_THRESH is -0.0195 -159: -- PARSED VALUE=|MIN -0.107574 AVE -0.019504 MAX 0.207060 NONZERO 54872 NUMVOX 54872| -159: -- PARSED_VALUE=|-0.019504| -159: Not an error -162: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g-stats.stdout.txt -162: -- REGEX is AVE *([-0-9.]*) -162: -- LOWER_THRESH is -0.0001 -162: -- UPPER_THRESH is 0.0001 -162: -- PARSED VALUE=|MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872| -162: -- PARSED_VALUE=|-0.000000| -162: Not an error -393/578 Test #144: plm-adjust-a-check .................... Passed 0.08 sec -test 177 - Start 177: plm-boundary-b-check - -177: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1056" "-DUPPER_THRESH=1056" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -177: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -177: Test timeout computed to be: 1500 -394/578 Test #147: plm-adjust-b-check .................... Passed 0.07 sec +394/578 Test #144: plm-adjust-a-check .................... Passed 0.07 sec test 180 Start 180: plm-boundary-c-check 180: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=840" "-DUPPER_THRESH=840" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 180: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 180: Test timeout computed to be: 1500 -395/578 Test #150: plm-adjust-c-check .................... Passed 0.08 sec +128: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-2.stdout.txt +128: -- REGEX is Mean: *([-0-9.]*) +128: -- LOWER_THRESH is -1.6 +128: -- UPPER_THRESH is -1.5 +128: -- PARSED VALUE=|Mean: -1.562 0.019 0.000| +128: -- PARSED_VALUE=|-1.562| +128: Not an error +395/578 Test #128: landmark-warp-c-check-2 ............... Passed 0.10 sec test 183 Start 183: plm-boundary-d-check 183: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=2.614" "-DUPPER_THRESH=2.615" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 183: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 183: Test timeout computed to be: 1500 -396/578 Test #153: plm-adjust-d-check .................... Passed 0.08 sec +150: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c-stats.stdout.txt +150: -- REGEX is AVE *([-0-9.]*) +150: -- LOWER_THRESH is -819.55 +150: -- UPPER_THRESH is -819.54 +150: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| +150: -- PARSED_VALUE=|-819.546265| +150: Not an error +396/578 Test #150: plm-adjust-c-check .................... Passed 0.05 sec test 186 Start 186: plm-boundary-e-check 186: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=2.141" "-DUPPER_THRESH=2.143" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 186: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 186: Test timeout computed to be: 1500 -397/578 Test #156: plm-adjust-e-check .................... Passed 0.09 sec +147: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt +147: -- REGEX is AVE *([-0-9.]*) +147: -- LOWER_THRESH is -819.55 +147: -- UPPER_THRESH is -819.54 +147: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| +147: -- PARSED_VALUE=|-819.546265| +147: Not an error +397/578 Test #147: plm-adjust-b-check .................... Passed 0.07 sec test 189 Start 189: plm-convert-dicom-a-check 189: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-stats.stdout.txt" "-DREGEX= 0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1648003" "-DUPPER_THRESH=1648003" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 189: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 189: Test timeout computed to be: 1500 -398/578 Test #159: plm-adjust-f-check .................... Passed 0.08 sec +153: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt +153: -- REGEX is AVE *([-0-9.]*) +153: -- LOWER_THRESH is -782.97 +153: -- UPPER_THRESH is -782.96 +153: -- PARSED VALUE=|MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872| +153: -- PARSED_VALUE=|-782.961060| +153: Not an error +398/578 Test #153: plm-adjust-d-check .................... Passed 0.06 sec test 192 Start 192: plm-convert-dicom-b-check 192: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt" "-DREGEX=Patient Position . (.*[^ ]) *$" "-DMATCH_STRING=FFS" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" 192: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 192: Test timeout computed to be: 1500 -399/578 Test #162: plm-adjust-g-check .................... Passed 0.08 sec +156: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e-stats.stdout.txt +156: -- REGEX is AVE *([-0-9.]*) +156: -- LOWER_THRESH is -1298.87 +156: -- UPPER_THRESH is -1298.86 +156: -- PARSED VALUE=|MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872| +156: -- PARSED_VALUE=|-1298.865601| +156: Not an error +399/578 Test #156: plm-adjust-e-check .................... Passed 0.06 sec test 195 Start 195: plm-convert-dicom-c-check 195: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=280" "-DUPPER_THRESH=280" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 195: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 195: Test timeout computed to be: 1500 +159: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f-stats.stdout.txt +159: -- REGEX is AVE *([-0-9.]*) +159: -- LOWER_THRESH is -0.0196 +159: -- UPPER_THRESH is -0.0195 +159: -- PARSED VALUE=|MIN -0.107574 AVE -0.019504 MAX 0.207060 NONZERO 54872 NUMVOX 54872| +159: -- PARSED_VALUE=|-0.019504| +159: Not an error 165: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h-stats.stdout.txt 165: -- REGEX is AVE *([-0-9.]*) 165: -- LOWER_THRESH is -0.2481 @@ -17000,13 +17362,13 @@ 165: -- PARSED VALUE=|MIN -0.283680 AVE -0.248078 MAX 0.156631 NONZERO 54872 NUMVOX 54872| 165: -- PARSED_VALUE=|-0.248078| 165: Not an error -400/578 Test #165: plm-adjust-h-check .................... Passed 0.09 sec -test 196 - Start 196: plm-convert-dicom-d - -196: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-d.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -196: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -196: Test timeout computed to be: 1500 +162: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g-stats.stdout.txt +162: -- REGEX is AVE *([-0-9.]*) +162: -- LOWER_THRESH is -0.0001 +162: -- UPPER_THRESH is 0.0001 +162: -- PARSED VALUE=|MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872| +162: -- PARSED_VALUE=|-0.000000| +162: Not an error 168: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-stats.stdout.txt 168: -- REGEX is AVE *([-0-9.]*) 168: -- LOWER_THRESH is -921.5941 @@ -17014,13 +17376,6 @@ 168: -- PARSED VALUE=|MIN -1000.000000 AVE -921.594055 MAX -4.987521 NONZERO 54872 NUMVOX 54872| 168: -- PARSED_VALUE=|-921.594055| 168: Not an error -401/578 Test #168: plm-adjust-i-check .................... Passed 0.08 sec -test 197 - Start 197: plm-convert-dicom-e - -197: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/tmp/;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-e.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -197: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -197: Test timeout computed to be: 1500 171: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-stats.stdout.txt 171: -- REGEX is AVE *([-0-9.]*) 171: -- LOWER_THRESH is -921.6276 @@ -17028,13 +17383,6 @@ 171: -- PARSED VALUE=|MIN -1000.000000 AVE -921.627502 MAX -4.987521 NONZERO 54872 NUMVOX 54872| 171: -- PARSED_VALUE=|-921.627502| 171: Not an error -402/578 Test #171: plm-adjust-j-check .................... Passed 0.09 sec -test 198 - Start 198: plm-convert-dicom-f - -198: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-f-dicom;--referenced-ct;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -198: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -198: Test timeout computed to be: 1500 174: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a-stats.stdout.txt 174: -- REGEX is NONZERO *([-0-9.]*) 174: -- LOWER_THRESH is 1056 @@ -17042,13 +17390,6 @@ 174: -- PARSED VALUE=|MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000| 174: -- PARSED_VALUE=|1056| 174: Not an error -403/578 Test #174: plm-boundary-a-check .................. Passed 0.09 sec -test 201 - Start 201: plm-convert-dicom-donut-a-check - -201: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=2623" "-DUPPER_THRESH=2623" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -201: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -201: Test timeout computed to be: 1500 177: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b-stats.stdout.txt 177: -- REGEX is NONZERO *([-0-9.]*) 177: -- LOWER_THRESH is 1056 @@ -17056,49 +17397,63 @@ 177: -- PARSED VALUE=|MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000| 177: -- PARSED_VALUE=|1056| 177: Not an error -404/578 Test #177: plm-boundary-b-check .................. Passed 0.10 sec +400/578 Test #159: plm-adjust-f-check .................... Passed 0.06 sec +test 196 + Start 196: plm-convert-dicom-d + +196: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-d.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +196: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +196: Test timeout computed to be: 1500 +401/578 Test #162: plm-adjust-g-check .................... Passed 0.06 sec +test 197 + Start 197: plm-convert-dicom-e + +197: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/tmp/;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-e.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +197: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +197: Test timeout computed to be: 1500 +402/578 Test #165: plm-adjust-h-check .................... Passed 0.07 sec +test 198 + Start 198: plm-convert-dicom-f + +198: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-f-dicom;--referenced-ct;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +198: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +198: Test timeout computed to be: 1500 +403/578 Test #168: plm-adjust-i-check .................... Passed 0.07 sec +test 201 + Start 201: plm-convert-dicom-donut-a-check + +201: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=2623" "-DUPPER_THRESH=2623" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +201: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +201: Test timeout computed to be: 1500 +404/578 Test #171: plm-adjust-j-check .................... Passed 0.07 sec test 204 Start 204: plm-convert-dicom-donut-b-check 204: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1924" "-DUPPER_THRESH=1924" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 204: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 204: Test timeout computed to be: 1500 -180: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c-stats.stdout.txt -180: -- REGEX is NONZERO *([-0-9.]*) -180: -- LOWER_THRESH is 840 -180: -- UPPER_THRESH is 840 -180: -- PARSED VALUE=|MIN 0.000000 AVE 0.105000 MAX 1.000000 NONZERO 840 NUMVOX 8000| -180: -- PARSED_VALUE=|840| -180: Not an error -405/578 Test #180: plm-boundary-c-check .................. Passed 0.11 sec +405/578 Test #174: plm-boundary-a-check .................. Passed 0.06 sec test 205 Start 205: plm-convert-dicom-donut-c 205: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--filenames-without-uids;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-c" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 205: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 205: Test timeout computed to be: 1500 -186: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e-stats.stdout.txt -186: -- REGEX is AVE *([-0-9.]*) -186: -- LOWER_THRESH is 2.141 -186: -- UPPER_THRESH is 2.143 -186: -- PARSED VALUE=|MIN 0.000000 AVE 2.142000 MAX 56.000000 NONZERO 840 NUMVOX 8000| -186: -- PARSED_VALUE=|2.142000| -186: Not an error -406/578 Test #186: plm-boundary-e-check .................. Passed 0.11 sec +406/578 Test #177: plm-boundary-b-check .................. Passed 0.06 sec test 208 Start 208: plm-convert-cxt-check 208: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1648003" "-DUPPER_THRESH=1648003" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 208: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 208: Test timeout computed to be: 1500 -189: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-stats.stdout.txt -189: -- REGEX is 0 *NVOX *([-0-9.]*) -189: -- LOWER_THRESH is 1648003 -189: -- UPPER_THRESH is 1648003 -189: -- PARSED VALUE=|S 0 NVOX 1648003| -189: -- PARSED_VALUE=|1648003| -189: Not an error -407/578 Test #189: plm-convert-dicom-a-check ............. Passed 0.12 sec +180: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c-stats.stdout.txt +180: -- REGEX is NONZERO *([-0-9.]*) +180: -- LOWER_THRESH is 840 +180: -- UPPER_THRESH is 840 +180: -- PARSED VALUE=|MIN 0.000000 AVE 0.105000 MAX 1.000000 NONZERO 840 NUMVOX 8000| +180: -- PARSED_VALUE=|840| +180: Not an error +407/578 Test #180: plm-boundary-c-check .................. Passed 0.06 sec test 212 Start 212: plm-convert-dose-scale-check @@ -17112,28 +17467,41 @@ 183: -- PARSED VALUE=|MIN 0.000000 AVE 2.614500 MAX 56.000000 NONZERO 1056 NUMVOX 8000| 183: -- PARSED_VALUE=|2.614500| 183: Not an error -408/578 Test #183: plm-boundary-d-check .................. Passed 0.14 sec +408/578 Test #183: plm-boundary-d-check .................. Passed 0.06 sec test 215 Start 215: plm-crop-a-check-1 215: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=11 16 3" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" 215: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 215: Test timeout computed to be: 1500 -192: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt -192: -- REGEX is Patient Position . (.*[^ ]) *$ -192: -- MATCH_STRING is FFS -192: -- PARSED VALUE=|Patient Position = FFS | -192: -- PARSED_VALUE=|FFS| -192: -- LENGTH=3 -192: -- |FFS|FFS| -192: Not an error -409/578 Test #192: plm-convert-dicom-b-check ............. Passed 0.14 sec +186: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e-stats.stdout.txt +186: -- REGEX is AVE *([-0-9.]*) +186: -- LOWER_THRESH is 2.141 +186: -- UPPER_THRESH is 2.143 +186: -- PARSED VALUE=|MIN 0.000000 AVE 2.142000 MAX 56.000000 NONZERO 840 NUMVOX 8000| +186: -- PARSED_VALUE=|2.142000| +186: Not an error +409/578 Test #186: plm-boundary-e-check .................. Passed 0.07 sec test 218 Start 218: plm-crop-b-check-1 218: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=19 11 4" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" 218: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 218: Test timeout computed to be: 1500 +189: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-stats.stdout.txt +189: -- REGEX is 0 *NVOX *([-0-9.]*) +189: -- LOWER_THRESH is 1648003 +189: -- UPPER_THRESH is 1648003 +189: -- PARSED VALUE=|S 0 NVOX 1648003| +189: -- PARSED_VALUE=|1648003| +189: Not an error +410/578 Test #189: plm-convert-dicom-a-check ............. Passed 0.07 sec +test 221 + Start 221: plm-crop-c-check-1 + +221: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=15 15 15" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" +221: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +221: Test timeout computed to be: 1500 195: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-stats.stdout.txt 195: -- REGEX is NONZERO *([-0-9.]*) 195: -- LOWER_THRESH is 280 @@ -17141,13 +17509,28 @@ 195: -- PARSED VALUE=|MIN 0.000000 AVE 0.000280 MAX 1.000000 NONZERO 280 NUMVOX 1000000| 195: -- PARSED_VALUE=|280| 195: Not an error -410/578 Test #195: plm-convert-dicom-c-check ............. Passed 0.14 sec -test 221 - Start 221: plm-crop-c-check-1 +411/578 Test #195: plm-convert-dicom-c-check ............. Passed 0.08 sec +test 223 + Start 223: plm-dice-a-check-1 -221: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=15 15 15" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" -221: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -221: Test timeout computed to be: 1500 +223: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.799" "-DUPPER_THRESH=0.801" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +223: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +223: Test timeout computed to be: 1500 +192: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt +192: -- REGEX is Patient Position . (.*[^ ]) *$ +192: -- MATCH_STRING is FFS +192: -- PARSED VALUE=|Patient Position = FFS | +192: -- PARSED_VALUE=|FFS| +192: -- LENGTH=3 +192: -- |FFS|FFS| +192: Not an error +412/578 Test #192: plm-convert-dicom-b-check ............. Passed 0.08 sec +test 225 + Start 225: plm-dice-b-check-1 + +225: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +225: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +225: Test timeout computed to be: 1500 196: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 196: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-d.nrrd 196: EXPECTED_ERRNO is 1 @@ -17164,13 +17547,13 @@ 201: -- PARSED VALUE=|S 0 NVOX 2623| 201: -- PARSED_VALUE=|2623| 201: Not an error -411/578 Test #201: plm-convert-dicom-donut-a-check ....... Passed 0.12 sec -test 223 - Start 223: plm-dice-a-check-1 +413/578 Test #201: plm-convert-dicom-donut-a-check ....... Passed 0.06 sec +test 227 + Start 227: plm-dice-c-check-1 -223: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.799" "-DUPPER_THRESH=0.801" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -223: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -223: Test timeout computed to be: 1500 +227: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=26.31" "-DUPPER_THRESH=26.32" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +227: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +227: Test timeout computed to be: 1500 204: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-stats.stdout.txt 204: -- REGEX is S *0 *NVOX *([-0-9.]*) 204: -- LOWER_THRESH is 1924 @@ -17178,6 +17561,13 @@ 204: -- PARSED VALUE=|S 0 NVOX 1924| 204: -- PARSED_VALUE=|1924| 204: Not an error +414/578 Test #204: plm-convert-dicom-donut-b-check ....... Passed 0.07 sec +test 228 + Start 228: plm-dice-c-check-2 + +228: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Avg average Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=3.40" "-DUPPER_THRESH=3.41" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +228: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +228: Test timeout computed to be: 1500 205: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 205: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--filenames-without-uids;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-c 205: EXPECTED_ERRNO is @@ -17188,6 +17578,13 @@ 208: -- PARSED VALUE=|S 0 NVOX 1648003| 208: -- PARSED_VALUE=|1648003| 208: Not an error +415/578 Test #208: plm-convert-cxt-check ................. Passed 0.07 sec +test 229 + Start 229: plm-dice-c-check-3 + +229: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=7.11" "-DUPPER_THRESH=7.12" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +229: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +229: Test timeout computed to be: 1500 212: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale-stats.stdout.txt 212: -- REGEX is MAX *([-0-9.]*) 212: -- LOWER_THRESH is 77.699 @@ -17203,34 +17600,13 @@ 215: -- LENGTH=7 215: -- |11 16 3|11 16 3| 215: Not an error -412/578 Test #204: plm-convert-dicom-donut-b-check ....... Passed 0.12 sec -test 225 - Start 225: plm-dice-b-check-1 - -225: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -225: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -225: Test timeout computed to be: 1500 -413/578 Test #208: plm-convert-cxt-check ................. Passed 0.10 sec -test 227 - Start 227: plm-dice-c-check-1 - -227: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=26.31" "-DUPPER_THRESH=26.32" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -227: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -227: Test timeout computed to be: 1500 -414/578 Test #212: plm-convert-dose-scale-check .......... Passed 0.10 sec -test 228 - Start 228: plm-dice-c-check-2 - -228: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Avg average Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=3.40" "-DUPPER_THRESH=3.41" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -228: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -228: Test timeout computed to be: 1500 -415/578 Test #215: plm-crop-a-check-1 .................... Passed 0.10 sec -test 229 - Start 229: plm-dice-c-check-3 +416/578 Test #215: plm-crop-a-check-1 .................... Passed 0.06 sec +test 230 + Start 230: plm-dice-c-check-4 -229: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=7.11" "-DUPPER_THRESH=7.12" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -229: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -229: Test timeout computed to be: 1500 +230: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Max average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=8.53" "-DUPPER_THRESH=8.54" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +230: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +230: Test timeout computed to be: 1500 218: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b-stats.stdout.txt 218: -- REGEX is ^Size = (.*)$ 218: -- MATCH_STRING is 19 11 4 @@ -17239,13 +17615,14 @@ 218: -- LENGTH=7 218: -- |19 11 4|19 11 4| 218: Not an error -416/578 Test #218: plm-crop-b-check-1 .................... Passed 0.10 sec -test 230 - Start 230: plm-dice-c-check-4 - -230: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Max average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=8.53" "-DUPPER_THRESH=8.54" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -230: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -230: Test timeout computed to be: 1500 +221: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt +221: -- REGEX is ^Size = (.*)$ +221: -- MATCH_STRING is 15 15 15 +221: -- PARSED VALUE=|Size = 15 15 15| +221: -- PARSED_VALUE=|15 15 15| +221: -- LENGTH=8 +221: -- |15 15 15|15 15 15| +221: Not an error 223: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt 223: -- REGEX is ^DICE: *([-0-9.]*) 223: -- LOWER_THRESH is 0.799 @@ -17253,90 +17630,48 @@ 223: -- PARSED VALUE=|DICE: 0.800000| 223: -- PARSED_VALUE=|0.800000| 223: Not an error -417/578 Test #223: plm-dice-a-check-1 .................... Passed 0.09 sec +225: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt +225: -- REGEX is ^DICE: *([-0-9.]*) +225: -- LOWER_THRESH is 0.999 +225: -- UPPER_THRESH is 1.000 +225: -- PARSED VALUE=|DICE: 1.000000| +225: -- PARSED_VALUE=|1.000000| +225: Not an error +417/578 Test #212: plm-convert-dose-scale-check .......... Passed 0.07 sec test 231 Start 231: plm-dice-c-check-5 231: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Percent .* \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=26.31" "-DUPPER_THRESH=26.32" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 231: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 231: Test timeout computed to be: 1500 -221: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt -221: -- REGEX is ^Size = (.*)$ -221: -- MATCH_STRING is 15 15 15 -221: -- PARSED VALUE=|Size = 15 15 15| -221: -- PARSED_VALUE=|15 15 15| -221: -- LENGTH=8 -221: -- |15 15 15|15 15 15| -221: Not an error -418/578 Test #221: plm-crop-c-check-1 .................... Passed 0.12 sec +418/578 Test #218: plm-crop-b-check-1 .................... Passed 0.06 sec test 233 Start 233: plm-dice-d-check-1 233: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=45.575" "-DUPPER_THRESH=45.585" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 233: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 233: Test timeout computed to be: 1500 -129: RETVAL: 0 -129: STDOUT: Hello world -129: Gonna convert pointsets -129: Pointset: -129: rect-2-0 -26.271700 -52.162899 46.052799 -129: rect-2-1 65.870201 -52.543598 46.053001 -129: rect-2-2 65.870201 52.543900 46.053001 -129: rect-2-3 -25.510201 53.686199 46.053001 -129: rect-2-4 -25.891001 -52.162899 -46.052502 -129: rect-2-5 66.631699 -53.305099 -46.053001 -129: rect-2-6 65.870201 53.305401 -46.053001 -129: rect-2-7 -25.129499 53.686199 -46.053001 -129: Conversion complete. -129: -26.2717 -52.1629 46.0528 -129: 65.8702 -52.5436 46.053 -129: 65.8702 52.5439 46.053 -129: -25.5102 53.6862 46.053 -129: -25.891 -52.1629 -46.0525 -129: 66.6317 -53.3051 -46.053 -129: 65.8702 53.3054 -46.053 -129: -25.1295 53.6862 -46.053 -129: Setting landmarks to TPS -129: Computing matrix -129: Setting xform -129: Converting to VF -129: Warping... -129: landmark 0 err 0.796775 mm -129: landmark 1 err 0.857190 mm -129: landmark 2 err 0.875645 mm -129: landmark 3 err 0.888102 mm -129: landmark 4 err 0.831617 mm -129: landmark 5 err 0.807000 mm -129: landmark 6 err 1.057389 mm -129: landmark 7 err 1.167740 mm -129: landmark RMS err 0.918533 mm -129: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha -129: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha -129: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv -129: -129: STDERR: -129: Not an error -419/578 Test #129: landmark-warp-d ....................... Passed 0.46 sec +419/578 Test #221: plm-crop-c-check-1 .................... Passed 0.06 sec test 234 Start 234: plm-dice-d-check-2 234: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Avg average Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=7.07" "-DUPPER_THRESH=7.08" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 234: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 234: Test timeout computed to be: 1500 -225: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt -225: -- REGEX is ^DICE: *([-0-9.]*) -225: -- LOWER_THRESH is 0.999 -225: -- UPPER_THRESH is 1.000 -225: -- PARSED VALUE=|DICE: 1.000000| -225: -- PARSED_VALUE=|1.000000| -225: Not an error -420/578 Test #225: plm-dice-b-check-1 .................... Passed 0.12 sec +420/578 Test #223: plm-dice-a-check-1 .................... Passed 0.06 sec test 235 Start 235: plm-dice-d-check-3 235: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=14.89" "-DUPPER_THRESH=14.90" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 235: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 235: Test timeout computed to be: 1500 +421/578 Test #225: plm-dice-b-check-1 .................... Passed 0.06 sec +test 236 + Start 236: plm-dice-d-check-4 + +236: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Max average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=18.38" "-DUPPER_THRESH=18.39" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +236: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +236: Test timeout computed to be: 1500 227: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 227: -- REGEX is ^Hausdorff distance = *([-0-9.]*) 227: -- LOWER_THRESH is 26.31 @@ -17344,13 +17679,13 @@ 227: -- PARSED VALUE=|Hausdorff distance = 26.315790| 227: -- PARSED_VALUE=|26.315790| 227: Not an error -421/578 Test #227: plm-dice-c-check-1 .................... Passed 0.12 sec -test 236 - Start 236: plm-dice-d-check-4 +422/578 Test #227: plm-dice-c-check-1 .................... Passed 0.06 sec +test 237 + Start 237: plm-dice-d-check-5 -236: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Max average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=18.38" "-DUPPER_THRESH=18.39" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -236: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -236: Test timeout computed to be: 1500 +237: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Percent .* \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=32.89" "-DUPPER_THRESH=32.90" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +237: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +237: Test timeout computed to be: 1500 229: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 229: -- REGEX is ^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*) 229: -- LOWER_THRESH is 7.11 @@ -17358,13 +17693,13 @@ 229: -- PARSED VALUE=|Avg average Hausdorff distance (boundary) = 7.115030| 229: -- PARSED_VALUE=|7.115030| 229: Not an error -422/578 Test #229: plm-dice-c-check-3 .................... Passed 0.10 sec -test 237 - Start 237: plm-dice-d-check-5 +423/578 Test #229: plm-dice-c-check-3 .................... Passed 0.04 sec +test 239 + Start 239: plm-dice-e-check-1 -237: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Percent .* \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=32.89" "-DUPPER_THRESH=32.90" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -237: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -237: Test timeout computed to be: 1500 +239: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.96550" "-DUPPER_THRESH=0.96554" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +239: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +239: Test timeout computed to be: 1500 228: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 228: -- REGEX is ^Avg average Hausdorff distance = *([-0-9.]*) 228: -- LOWER_THRESH is 3.40 @@ -17372,127 +17707,13 @@ 228: -- PARSED VALUE=|Avg average Hausdorff distance = 3.406955| 228: -- PARSED_VALUE=|3.406955| 228: Not an error -423/578 Test #228: plm-dice-c-check-2 .................... Passed 0.13 sec -test 239 - Start 239: plm-dice-e-check-1 - -239: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.96550" "-DUPPER_THRESH=0.96554" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -239: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -239: Test timeout computed to be: 1500 -198: RETVAL: 0 -198: STDOUT: Loading RDD -198: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8627RTDOSE -198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8628RTSTRUCT -198: Found DCM_ReferencedFrameOfReferenceSequence! -198: Found DCM_RTReferencedStudySequence! -198: Trying to load rt dose. -198: Load: DoseGridScaling = 0.000000 -198: RTDOSE: dim = 38 38 38 -198: ipp = -243.421005 -243.421005 -243.421005 -198: spc = 13.157900 13.157900 13.157900 -198: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -198: Bits_alloc: 32 -198: Bits_stored: 32 -198: High_bit: 31 -198: Pixel_rep: 0 -198: rc = 1, length = 109744, npix = 54872 -198: Trying to load rt structure set. -198: Adding structure (1), Foreground -198: Structure 1 has color 255\0\0 -198: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8627RTDOSE -198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8628RTSTRUCT -198: Found DCM_ReferencedFrameOfReferenceSequence! -198: Found DCM_RTReferencedStudySequence! -198: Trying to load rt dose. -198: Load: DoseGridScaling = 0.000000 -198: RTDOSE: dim = 38 38 38 -198: ipp = -243.421005 -243.421005 -243.421005 -198: spc = 13.157900 13.157900 13.157900 -198: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -198: Bits_alloc: 32 -198: Bits_stored: 32 -198: High_bit: 31 -198: Pixel_rep: 0 -198: rc = 1, length = 109744, npix = 54872 -198: Trying to load rt structure set. -198: Adding structure (1), Foreground -198: Structure 1 has color 255\0\0 -198: Loading RDD complete -198: date_string: 20230502 -198: description_string: -198: referring_physician_name_string: -198: accession_number_string: -198: time_string: 231058 -198: study_id_string: -198: position_reference_indicator_string: -198: ct_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8626 -198: dose_instance_uid: -198: dose_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3553650.1683112281.532306 -198: plan_instance_uid: -198: rtstruct_instance_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8624 -198: rtstruct_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3553650.1683112281.532307 -198: study_metadata: -198: Metadata -198: 0008,0052 | 1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8607 -198: 0010,0010 | RECT^SYNTH -198: 0010,0020 | RECT-SYNTH -198: 0010,0040 | O -198: 0018,5100 | HFS -198: 0020,000d | 1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8606 -198: 0020,0010 | 10001 -198: image_metadata: -198: Metadata -198: 0008,0012 | 20230502 -198: 0008,0013 | 231058 -198: 0008,0060 | CT -198: 0008,103e | rect-2 -198: rtstruct_metadata: -198: Metadata -198: dose_metadata: -198: Metadata -198: rtplan_metadata: -198: Metadata -198: sro_metadata: -198: Metadata -198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542141.1683112258.256389RTSTRUCT -198: Found DCM_ReferencedFrameOfReferenceSequence! -198: Found DCM_RTReferencedStudySequence! -198: Trying to load rt structure set. -198: Adding structure (1), Foreground -198: Structure 1 has color 255\0\0 -198: Setting PIH from RDD -198: PIH is: -198: Origin = -243.4211 -243.4211 -243.4211 -198: Size = 38 38 38 -198: Spacing = 13.1579 13.1579 13.1579 -198: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -198: Rt_study_warp: Convert ss_img to cxt. -198: Rt_study_warp: Apply dicom_dir. -198: Rt_study_warp: Set geometry from PIH. -198: Rt_study_warp: Set rasterization geometry. -198: rast_dim = 512 512 7 -198: rast_offset = -55.2632 -55.2632 -46.0526 -198: rast_spacing = 0.215872 0.215872 13.1579 -198: Rt_study_warp: warp and save ss. -198: Warp_and_save_ss: save_ss_img -198: Rt_study_warp: Save dicom. -198: Keyholizing structure 0. -198: Finished! -198: -198: STDERR: -198: Not an error -424/578 Test #198: plm-convert-dicom-f ................... Passed 0.32 sec +424/578 Test #228: plm-dice-c-check-2 .................... Passed 0.05 sec test 240 Start 240: plm-dice-e-check-2 240: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=4" "-DUPPER_THRESH=4" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 240: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 240: Test timeout computed to be: 1500 -196: RETVAL: 1 -196: STDOUT: Could not open input file /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/ for read -196: -196: STDERR: -196: Not an error 230: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 230: -- REGEX is ^Max average Hausdorff distance \(boundary\) = *([-0-9.]*) 230: -- LOWER_THRESH is 8.53 @@ -17500,7 +17721,7 @@ 230: -- PARSED VALUE=|Max average Hausdorff distance (boundary) = 8.534851| 230: -- PARSED_VALUE=|8.534851| 230: Not an error -425/578 Test #230: plm-dice-c-check-4 .................... Passed 0.12 sec +425/578 Test #230: plm-dice-c-check-4 .................... Passed 0.05 sec test 242 Start 242: plm-dice-f-check-1 @@ -17514,7 +17735,7 @@ 231: -- PARSED VALUE=|Percent (0.95) Hausdorff distance (boundary) = 26.315790| 231: -- PARSED_VALUE=|26.315790| 231: Not an error -426/578 Test #231: plm-dice-c-check-5 .................... Passed 0.11 sec +426/578 Test #231: plm-dice-c-check-5 .................... Passed 0.05 sec test 243 Start 243: plm-dice-f-check-2 @@ -17528,20 +17749,13 @@ 233: -- PARSED VALUE=|Hausdorff distance = 45.580288| 233: -- PARSED_VALUE=|45.580288| 233: Not an error -427/578 Test #233: plm-dice-d-check-1 .................... Passed 0.11 sec +427/578 Test #233: plm-dice-d-check-1 .................... Passed 0.05 sec test 244 Start 244: plm-dmap-a 244: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;maurer;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 244: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 244: Test timeout computed to be: 1500 -234: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt -234: -- REGEX is ^Avg average Hausdorff distance = *([-0-9.]*) -234: -- LOWER_THRESH is 7.07 -234: -- UPPER_THRESH is 7.08 -234: -- PARSED VALUE=|Avg average Hausdorff distance = 7.072703| -234: -- PARSED_VALUE=|7.072703| -234: Not an error 235: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 235: -- REGEX is ^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*) 235: -- LOWER_THRESH is 14.89 @@ -17549,6 +17763,13 @@ 235: -- PARSED VALUE=|Avg average Hausdorff distance (boundary) = 14.894061| 235: -- PARSED_VALUE=|14.894061| 235: Not an error +234: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt +234: -- REGEX is ^Avg average Hausdorff distance = *([-0-9.]*) +234: -- LOWER_THRESH is 7.07 +234: -- UPPER_THRESH is 7.08 +234: -- PARSED VALUE=|Avg average Hausdorff distance = 7.072703| +234: -- PARSED_VALUE=|7.072703| +234: Not an error 236: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 236: -- REGEX is ^Max average Hausdorff distance \(boundary\) = *([-0-9.]*) 236: -- LOWER_THRESH is 18.38 @@ -17556,11 +17777,6 @@ 236: -- PARSED VALUE=|Max average Hausdorff distance (boundary) = 18.384613| 236: -- PARSED_VALUE=|18.384613| 236: Not an error -197: RETVAL: 1 -197: STDOUT: Sorry, could not load input as any known type. -197: -197: STDERR: -197: Not an error 237: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 237: -- REGEX is ^Percent .* \(boundary\) = *([-0-9.]*) 237: -- LOWER_THRESH is 32.89 @@ -17575,83 +17791,69 @@ 239: -- PARSED VALUE=|DICE: 0.965517| 239: -- PARSED_VALUE=|0.965517| 239: Not an error -240: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt -240: -- REGEX is ^Hausdorff distance = *([-0-9.]*) -240: -- LOWER_THRESH is 4 -240: -- UPPER_THRESH is 4 -240: -- PARSED VALUE=|Hausdorff distance = 4.000000| -240: -- PARSED_VALUE=|4.000000| -240: Not an error -428/578 Test #196: plm-convert-dicom-d ................... Passed 0.37 sec +428/578 Test #234: plm-dice-d-check-2 .................... Passed 0.05 sec test 246 Start 246: plm-dmap-c 246: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;song_maurer;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 246: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 246: Test timeout computed to be: 1500 -429/578 Test #197: plm-convert-dicom-e ................... Passed 0.37 sec +429/578 Test #235: plm-dice-d-check-3 .................... Passed 0.06 sec test 248 Start 248: plm-dvh-a-check-1 248: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-DREGEX=^15,([-0-9.]*)," "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 248: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 248: Test timeout computed to be: 1500 -430/578 Test #234: plm-dice-d-check-2 .................... Passed 0.11 sec +430/578 Test #236: plm-dice-d-check-4 .................... Passed 0.05 sec test 249 Start 249: plm-dvh-a-check-2 249: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-DREGEX=^15.5,([-0-9.]*)," "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.001" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 249: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 249: Test timeout computed to be: 1500 -431/578 Test #235: plm-dice-d-check-3 .................... Passed 0.10 sec +431/578 Test #237: plm-dice-d-check-5 .................... Passed 0.06 sec test 251 Start 251: plm-dvh-b-check-1 251: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-DREGEX=^15,([-0-9.]*)" "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 251: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 251: Test timeout computed to be: 1500 -432/578 Test #236: plm-dice-d-check-4 .................... Passed 0.10 sec +432/578 Test #239: plm-dice-e-check-1 .................... Passed 0.06 sec test 252 Start 252: plm-dvh-b-check-2 252: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-DREGEX=^15.5,([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.001" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 252: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 252: Test timeout computed to be: 1500 -433/578 Test #237: plm-dice-d-check-5 .................... Passed 0.10 sec +242: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt +242: -- REGEX is ^DICE: *([-0-9.]*) +242: -- LOWER_THRESH is 1 +242: -- UPPER_THRESH is 1 +242: -- PARSED VALUE=|DICE: 1.000000| +242: -- PARSED_VALUE=|1.000000| +242: Not an error +433/578 Test #242: plm-dice-f-check-1 .................... Passed 0.05 sec test 254 Start 254: plm-dvh-c-check-1 254: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv" "-DREGEX=^15,([-0-9.]*)" "-DLOWER_THRESH=0.780" "-DUPPER_THRESH=0.783" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 254: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 254: Test timeout computed to be: 1500 -434/578 Test #239: plm-dice-e-check-1 .................... Passed 0.10 sec +240: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt +240: -- REGEX is ^Hausdorff distance = *([-0-9.]*) +240: -- LOWER_THRESH is 4 +240: -- UPPER_THRESH is 4 +240: -- PARSED VALUE=|Hausdorff distance = 4.000000| +240: -- PARSED_VALUE=|4.000000| +240: Not an error +434/578 Test #240: plm-dice-e-check-2 .................... Passed 0.06 sec test 255 Start 255: plm-dvh-c-check-2 255: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv" "-DREGEX=^15.5,([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.001" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 255: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 255: Test timeout computed to be: 1500 -435/578 Test #240: plm-dice-e-check-2 .................... Passed 0.10 sec -test 258 - Start 258: plm-fill-a-check - -258: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.1" "-DUPPER_THRESH=+0.1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -258: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -258: Test timeout computed to be: 1500 -242: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt -242: -- REGEX is ^DICE: *([-0-9.]*) -242: -- LOWER_THRESH is 1 -242: -- UPPER_THRESH is 1 -242: -- PARSED VALUE=|DICE: 1.000000| -242: -- PARSED_VALUE=|1.000000| -242: Not an error -436/578 Test #242: plm-dice-f-check-1 .................... Passed 0.11 sec -test 261 - Start 261: plm-mask-a-check - -261: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1000.1" "-DUPPER_THRESH=-999.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -261: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -261: Test timeout computed to be: 1500 243: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt 243: -- REGEX is ^Hausdorff distance = *([-0-9.]*) 243: -- LOWER_THRESH is 0 @@ -17659,33 +17861,19 @@ 243: -- PARSED VALUE=|Hausdorff distance = 0.000000| 243: -- PARSED_VALUE=|0.000000| 243: Not an error -437/578 Test #243: plm-dice-f-check-2 .................... Passed 0.11 sec -test 264 - Start 264: plm-gamma-a-check +435/578 Test #243: plm-dice-f-check-2 .................... Passed 0.06 sec +test 258 + Start 258: plm-fill-a-check -264: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.023" "-DUPPER_THRESH=0.024" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -264: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -264: Test timeout computed to be: 1500 +258: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.1" "-DUPPER_THRESH=+0.1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +258: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +258: Test timeout computed to be: 1500 244: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 244: PARMS is dmap;--algorithm;maurer;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha 244: EXPECTED_ERRNO is 246: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 246: PARMS is dmap;--algorithm;song_maurer;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha 246: EXPECTED_ERRNO is -248: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv -248: -- REGEX is ^15,([-0-9.]*), -248: -- LOWER_THRESH is 0.999 -248: -- UPPER_THRESH is 1.0 -248: -- PARSED VALUE=|15,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0| -248: -- PARSED_VALUE=|1| -248: Not an error -438/578 Test #248: plm-dvh-a-check-1 ..................... Passed 0.10 sec -test 267 - Start 267: plm-gamma-b-check - -267: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.245" "-DUPPER_THRESH=0.255" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -267: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -267: Test timeout computed to be: 1500 249: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv 249: -- REGEX is ^15.5,([-0-9.]*), 249: -- LOWER_THRESH is 0.0 @@ -17693,13 +17881,27 @@ 249: -- PARSED VALUE=|15.5,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0| 249: -- PARSED_VALUE=|0| 249: Not an error -439/578 Test #249: plm-dvh-a-check-2 ..................... Passed 0.10 sec -test 269 - Start 269: plm-gamma-c-check +436/578 Test #249: plm-dvh-a-check-2 ..................... Passed 0.03 sec +test 261 + Start 261: plm-mask-a-check -269: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.stdout.txt" "-DREGEX=Pass rate = *([-0-9.]*)" "-DLOWER_THRESH=90.6" "-DUPPER_THRESH=90.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -269: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -269: Test timeout computed to be: 1500 +261: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1000.1" "-DUPPER_THRESH=-999.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +261: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +261: Test timeout computed to be: 1500 +248: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv +248: -- REGEX is ^15,([-0-9.]*), +248: -- LOWER_THRESH is 0.999 +248: -- UPPER_THRESH is 1.0 +248: -- PARSED VALUE=|15,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0| +248: -- PARSED_VALUE=|1| +248: Not an error +437/578 Test #248: plm-dvh-a-check-1 ..................... Passed 0.05 sec +test 264 + Start 264: plm-gamma-a-check + +264: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.023" "-DUPPER_THRESH=0.024" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +264: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +264: Test timeout computed to be: 1500 251: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv 251: -- REGEX is ^15,([-0-9.]*) 251: -- LOWER_THRESH is 0.999 @@ -17707,13 +17909,6 @@ 251: -- PARSED VALUE=|15,1| 251: -- PARSED_VALUE=|1| 251: Not an error -440/578 Test #251: plm-dvh-b-check-1 ..................... Passed 0.09 sec -test 271 - Start 271: plm-gamma-d-check - -271: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.stdout.txt" "-DREGEX=Pass rate = *([-0-9.]*)" "-DLOWER_THRESH=89.9" "-DUPPER_THRESH=90.1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -271: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -271: Test timeout computed to be: 1500 252: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv 252: -- REGEX is ^15.5,([-0-9.]*) 252: -- LOWER_THRESH is 0.0 @@ -17721,13 +17916,6 @@ 252: -- PARSED VALUE=|15.5,0| 252: -- PARSED_VALUE=|0| 252: Not an error -441/578 Test #252: plm-dvh-b-check-2 ..................... Passed 0.11 sec -test 274 - Start 274: plm-maximum-a-check - -274: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -274: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -274: Test timeout computed to be: 1500 254: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv 254: -- REGEX is ^15,([-0-9.]*) 254: -- LOWER_THRESH is 0.780 @@ -17735,13 +17923,27 @@ 254: -- PARSED VALUE=|15,0.781709| 254: -- PARSED_VALUE=|0.781709| 254: Not an error -442/578 Test #254: plm-dvh-c-check-1 ..................... Passed 0.10 sec -test 277 - Start 277: plm-multiply-a-check +438/578 Test #251: plm-dvh-b-check-1 ..................... Passed 0.05 sec +test 267 + Start 267: plm-gamma-b-check -277: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -277: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -277: Test timeout computed to be: 1500 +267: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.245" "-DUPPER_THRESH=0.255" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +267: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +267: Test timeout computed to be: 1500 +439/578 Test #254: plm-dvh-c-check-1 ..................... Passed 0.05 sec +test 269 + Start 269: plm-gamma-c-check + +269: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.stdout.txt" "-DREGEX=Pass rate = *([-0-9.]*)" "-DLOWER_THRESH=90.6" "-DUPPER_THRESH=90.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +269: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +269: Test timeout computed to be: 1500 +440/578 Test #252: plm-dvh-b-check-2 ..................... Passed 0.06 sec +test 271 + Start 271: plm-gamma-d-check + +271: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.stdout.txt" "-DREGEX=Pass rate = *([-0-9.]*)" "-DLOWER_THRESH=89.9" "-DUPPER_THRESH=90.1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +271: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +271: Test timeout computed to be: 1500 255: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv 255: -- REGEX is ^15.5,([-0-9.]*) 255: -- LOWER_THRESH is 0.0 @@ -17749,13 +17951,13 @@ 255: -- PARSED VALUE=|15.5,0| 255: -- PARSED_VALUE=|0| 255: Not an error -443/578 Test #255: plm-dvh-c-check-2 ..................... Passed 0.10 sec -test 280 - Start 280: plm-multiply-vf-a-check +441/578 Test #255: plm-dvh-c-check-2 ..................... Passed 0.06 sec +test 274 + Start 274: plm-maximum-a-check -280: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=100.000" "-DUPPER_THRESH=100.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -280: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -280: Test timeout computed to be: 1500 +274: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +274: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +274: Test timeout computed to be: 1500 258: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a-stats.stdout.txt 258: -- REGEX is AVE *([-0-9.]*) 258: -- LOWER_THRESH is -0.1 @@ -17763,13 +17965,13 @@ 258: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872| 258: -- PARSED_VALUE=|0.000000| 258: Not an error -444/578 Test #258: plm-fill-a-check ...................... Passed 0.09 sec -test 281 - Start 281: plm-usage +442/578 Test #258: plm-fill-a-check ...................... Passed 0.06 sec +test 277 + Start 277: plm-multiply-a-check -281: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-usage" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -281: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -281: Test timeout computed to be: 1500 +277: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +277: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +277: Test timeout computed to be: 1500 261: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a-stats.stdout.txt 261: -- REGEX is AVE *([-0-9.]*) 261: -- LOWER_THRESH is -1000.1 @@ -17777,13 +17979,85 @@ 261: -- PARSED VALUE=|MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872| 261: -- PARSED_VALUE=|-1000.000000| 261: Not an error -445/578 Test #261: plm-mask-a-check ...................... Passed 0.09 sec +443/578 Test #261: plm-mask-a-check ...................... Passed 0.05 sec +test 280 + Start 280: plm-multiply-vf-a-check + +280: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=100.000" "-DUPPER_THRESH=100.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +280: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +280: Test timeout computed to be: 1500 +196: RETVAL: 1 +196: STDOUT: Could not open input file /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/ for read +196: +196: STDERR: +196: Not an error +444/578 Test #196: plm-convert-dicom-d ................... Passed 0.28 sec +test 281 + Start 281: plm-usage + +281: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-usage" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +281: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +281: Test timeout computed to be: 1500 +197: RETVAL: 1 +197: STDOUT: Sorry, could not load input as any known type. +197: +197: STDERR: +197: Not an error +445/578 Test #197: plm-convert-dicom-e ................... Passed 0.28 sec test 284 Start 284: plm-reg-align-center-check 284: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-stats.stdout.txt" "-DREGEX=MAE *([-0-9.]*)" "-DLOWER_THRESH=-0.005" "-DUPPER_THRESH=0.005" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 284: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 284: Test timeout computed to be: 1500 +129: RETVAL: 0 +129: STDOUT: Hello world +129: Gonna convert pointsets +129: Pointset: +129: rect-2-0 -26.271700 -52.162899 46.052799 +129: rect-2-1 65.870201 -52.543598 46.053001 +129: rect-2-2 65.870201 52.543900 46.053001 +129: rect-2-3 -25.510201 53.686199 46.053001 +129: rect-2-4 -25.891001 -52.162899 -46.052502 +129: rect-2-5 66.631699 -53.305099 -46.053001 +129: rect-2-6 65.870201 53.305401 -46.053001 +129: rect-2-7 -25.129499 53.686199 -46.053001 +129: Conversion complete. +129: -26.2717 -52.1629 46.0528 +129: 65.8702 -52.5436 46.053 +129: 65.8702 52.5439 46.053 +129: -25.5102 53.6862 46.053 +129: -25.891 -52.1629 -46.0525 +129: 66.6317 -53.3051 -46.053 +129: 65.8702 53.3054 -46.053 +129: -25.1295 53.6862 -46.053 +129: Setting landmarks to TPS +129: Computing matrix +129: Setting xform +129: Converting to VF +129: Warping... +129: landmark 0 err 0.796775 mm +129: landmark 1 err 0.857190 mm +129: landmark 2 err 0.875645 mm +129: landmark 3 err 0.888102 mm +129: landmark 4 err 0.831617 mm +129: landmark 5 err 0.807000 mm +129: landmark 6 err 1.057389 mm +129: landmark 7 err 1.167740 mm +129: landmark RMS err 0.918533 mm +129: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha +129: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha +129: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv +129: +129: STDERR: +129: Not an error +446/578 Test #129: landmark-warp-d ....................... Passed 0.40 sec +test 287 + Start 287: plm-reg-itk-translation-check + +287: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-677.6" "-DUPPER_THRESH=-677.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +287: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +287: Test timeout computed to be: 1500 264: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a-stats.stdout.txt 264: -- REGEX is AVE *([-0-9.]*) 264: -- LOWER_THRESH is 0.023 @@ -17791,21 +18065,7 @@ 264: -- PARSED VALUE=|MIN 0.000000 AVE 0.023500 MAX 0.666667 NONZERO 400 NUMVOX 8000| 264: -- PARSED_VALUE=|0.023500| 264: Not an error -446/578 Test #264: plm-gamma-a-check ..................... Passed 0.09 sec -test 287 - Start 287: plm-reg-itk-translation-check - -287: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-677.6" "-DUPPER_THRESH=-677.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -287: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -287: Test timeout computed to be: 1500 -267: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b-stats.stdout.txt -267: -- REGEX is AVE *([-0-9.]*) -267: -- LOWER_THRESH is 0.245 -267: -- UPPER_THRESH is 0.255 -267: -- PARSED VALUE=|MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000| -267: -- PARSED_VALUE=|0.250000| -267: Not an error -447/578 Test #267: plm-gamma-b-check ..................... Passed 0.09 sec +447/578 Test #264: plm-gamma-a-check ..................... Passed 0.06 sec test 290 Start 290: plm-reg-itk-rigid-a-check-1 @@ -17819,13 +18079,6 @@ 269: -- PARSED VALUE=|Pass rate = 90.719998 %| 269: -- PARSED_VALUE=|90.719998| 269: Not an error -448/578 Test #269: plm-gamma-c-check ..................... Passed 0.10 sec -test 292 - Start 292: plm-reg-itk-rigid-a-check-2 - -292: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-939.3" "-DUPPER_THRESH=-939.1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -292: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -292: Test timeout computed to be: 1500 271: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.stdout.txt 271: -- REGEX is Pass rate = *([-0-9.]*) 271: -- LOWER_THRESH is 89.9 @@ -17833,6 +18086,13 @@ 271: -- PARSED VALUE=|Pass rate = 89.999998 %| 271: -- PARSED_VALUE=|89.999998| 271: Not an error +267: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b-stats.stdout.txt +267: -- REGEX is AVE *([-0-9.]*) +267: -- LOWER_THRESH is 0.245 +267: -- UPPER_THRESH is 0.255 +267: -- PARSED VALUE=|MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000| +267: -- PARSED_VALUE=|0.250000| +267: Not an error 274: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a-stats.stdout.txt 274: -- REGEX is AVE *([-0-9.]*) 274: -- LOWER_THRESH is 0.0 @@ -17847,30 +18107,6 @@ 277: -- PARSED VALUE=|MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872| 277: -- PARSED_VALUE=|0.000000| 277: Not an error -205: RETVAL: 0 -205: STDOUT: Trying to load ss_list: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt -205: Setting PIH from M_IMG -205: PIH is: -205: Origin = -25.0000 -25.0000 -25.0000 -205: Size = 38 38 38 -205: Spacing = 1.3158 1.3158 1.3158 -205: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -205: Rt_study_warp: Convert ss_img to cxt. -205: Doing extraction -205: Rt_study_warp: Apply dicom_dir. -205: Rt_study_warp: Set geometry from PIH. -205: Rt_study_warp: Set rasterization geometry. -205: rast_dim = 512 512 14 -205: rast_offset = -10.3618 -10.3618 -9.21053 -205: rast_spacing = 0.0404759 0.0404759 1.31579 -205: Rt_study_warp: warp and save ss. -205: Warp_and_save_ss: save_ss_img -205: Rt_study_warp: Save dicom. -205: Keyholizing structure 0. -205: Finished! -205: -205: STDERR: -205: Not an error 280: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a-stats.stdout.txt 280: -- REGEX is Mean: *([-0-9.]*) 280: -- LOWER_THRESH is 100.000 @@ -17881,35 +18117,42 @@ 281: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 281: PARMS is 281: EXPECTED_ERRNO is -449/578 Test #205: plm-convert-dicom-donut-c ............. Passed 0.52 sec +448/578 Test #267: plm-gamma-b-check ..................... Passed 0.06 sec +test 292 + Start 292: plm-reg-itk-rigid-a-check-2 + +292: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-939.3" "-DUPPER_THRESH=-939.1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +292: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +292: Test timeout computed to be: 1500 +449/578 Test #269: plm-gamma-c-check ..................... Passed 0.06 sec test 295 Start 295: plm-reg-itk-similarity-check-1 295: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-981.3" "-DUPPER_THRESH=-981.1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 295: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 295: Test timeout computed to be: 1500 -450/578 Test #271: plm-gamma-d-check ..................... Passed 0.10 sec +450/578 Test #271: plm-gamma-d-check ..................... Passed 0.06 sec test 297 Start 297: plm-reg-itk-similarity-check-2 297: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-940.8" "-DUPPER_THRESH=-940.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 297: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 297: Test timeout computed to be: 1500 -451/578 Test #274: plm-maximum-a-check ................... Passed 0.10 sec +451/578 Test #274: plm-maximum-a-check ................... Passed 0.05 sec test 300 Start 300: plm-reg-itk-bspline-check-1 300: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-764.0" "-DUPPER_THRESH=-763.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 300: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 300: Test timeout computed to be: 1500 -452/578 Test #277: plm-multiply-a-check .................. Passed 0.10 sec +452/578 Test #277: plm-multiply-a-check .................. Passed 0.05 sec test 302 Start 302: plm-reg-itk-demons-check-1 302: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=31.85" "-DUPPER_THRESH=34.95" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 302: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 302: Test timeout computed to be: 1500 -453/578 Test #280: plm-multiply-vf-a-check ............... Passed 0.10 sec +453/578 Test #280: plm-multiply-vf-a-check ............... Passed 0.05 sec test 304 Start 304: plm-reg-itk-demons-check-2 @@ -17923,7 +18166,7 @@ 287: -- PARSED VALUE=|MIN -999.914246 AVE -677.557922 MAX 0.000000 NONZERO 43320 NUMVOX 54872| 287: -- PARSED_VALUE=|-677.557922| 287: Not an error -454/578 Test #287: plm-reg-itk-translation-check ......... Passed 0.08 sec +454/578 Test #287: plm-reg-itk-translation-check ......... Passed 0.04 sec test 306 Start 306: plm-reg-itk-demons-diff-check-1 @@ -17937,21 +18180,116 @@ 284: -- PARSED VALUE=|MAE 0.000002 MSE 0.000000| 284: -- PARSED_VALUE=|0.000002| 284: Not an error -455/578 Test #284: plm-reg-align-center-check ............ Passed 0.10 sec +455/578 Test #284: plm-reg-align-center-check ............ Passed 0.05 sec test 308 Start 308: plm-reg-itk-demons-logd-check-1 308: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=32.65" "-DUPPER_THRESH=32.75" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 308: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 308: Test timeout computed to be: 1500 -290: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-1.stdout.txt -290: -- REGEX is AVE *([-0-9.]*) -290: -- LOWER_THRESH is -939.3 -290: -- UPPER_THRESH is -939.1 -290: -- PARSED VALUE=|MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872| -290: -- PARSED_VALUE=|-939.203979| -290: Not an error -456/578 Test #290: plm-reg-itk-rigid-a-check-1 ........... Passed 0.09 sec +198: RETVAL: 0 +198: STDOUT: Loading RDD +198: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886496RTDOSE +198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886497RTSTRUCT +198: Found DCM_ReferencedFrameOfReferenceSequence! +198: Found DCM_RTReferencedStudySequence! +198: Trying to load rt dose. +198: Load: DoseGridScaling = 0.000000 +198: RTDOSE: dim = 38 38 38 +198: ipp = -243.421005 -243.421005 -243.421005 +198: spc = 13.157900 13.157900 13.157900 +198: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +198: Bits_alloc: 32 +198: Bits_stored: 32 +198: High_bit: 31 +198: Pixel_rep: 0 +198: rc = 1, length = 109744, npix = 54872 +198: Trying to load rt structure set. +198: Adding structure (1), Foreground +198: Structure 1 has color 255\0\0 +198: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886496RTDOSE +198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886497RTSTRUCT +198: Found DCM_ReferencedFrameOfReferenceSequence! +198: Found DCM_RTReferencedStudySequence! +198: Trying to load rt dose. +198: Load: DoseGridScaling = 0.000000 +198: RTDOSE: dim = 38 38 38 +198: ipp = -243.421005 -243.421005 -243.421005 +198: spc = 13.157900 13.157900 13.157900 +198: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +198: Bits_alloc: 32 +198: Bits_stored: 32 +198: High_bit: 31 +198: Pixel_rep: 0 +198: rc = 1, length = 109744, npix = 54872 +198: Trying to load rt structure set. +198: Adding structure (1), Foreground +198: Structure 1 has color 255\0\0 +198: Loading RDD complete +198: date_string: 20240605 +198: description_string: +198: referring_physician_name_string: +198: accession_number_string: +198: time_string: 075005 +198: study_id_string: +198: position_reference_indicator_string: +198: ct_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886495 +198: dose_instance_uid: +198: dose_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3389723.1717523422.634505 +198: plan_instance_uid: +198: rtstruct_instance_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886493 +198: rtstruct_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3389723.1717523422.634506 +198: study_metadata: +198: Metadata +198: 0008,0052 | 1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523405.886476 +198: 0010,0010 | RECT^SYNTH +198: 0010,0020 | RECT-SYNTH +198: 0010,0040 | O +198: 0018,5100 | HFS +198: 0020,000d | 1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523405.886475 +198: 0020,0010 | 10001 +198: image_metadata: +198: Metadata +198: 0008,0012 | 20240605 +198: 0008,0013 | 075005 +198: 0008,0060 | CT +198: 0008,103e | rect-2 +198: rtstruct_metadata: +198: Metadata +198: dose_metadata: +198: Metadata +198: rtplan_metadata: +198: Metadata +198: sro_metadata: +198: Metadata +198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379328.1717523405.358730RTSTRUCT +198: Found DCM_ReferencedFrameOfReferenceSequence! +198: Found DCM_RTReferencedStudySequence! +198: Trying to load rt structure set. +198: Adding structure (1), Foreground +198: Structure 1 has color 255\0\0 +198: Setting PIH from RDD +198: PIH is: +198: Origin = -243.4211 -243.4211 -243.4211 +198: Size = 38 38 38 +198: Spacing = 13.1579 13.1579 13.1579 +198: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +198: Rt_study_warp: Convert ss_img to cxt. +198: Rt_study_warp: Apply dicom_dir. +198: Rt_study_warp: Set geometry from PIH. +198: Rt_study_warp: Set rasterization geometry. +198: rast_dim = 512 512 7 +198: rast_offset = -55.2632 -55.2632 -46.0526 +198: rast_spacing = 0.215872 0.215872 13.1579 +198: Rt_study_warp: warp and save ss. +198: Warp_and_save_ss: save_ss_img +198: Rt_study_warp: Save dicom. +198: Keyholizing structure 0. +198: Finished! +198: +198: STDERR: +198: Not an error +456/578 Test #198: plm-convert-dicom-f ................... Passed 0.34 sec test 310 Start 310: plm-reg-itk-demons-sym-logd-check-1 @@ -17965,21 +18303,21 @@ 292: -- PARSED VALUE=|MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872| 292: -- PARSED_VALUE=|-939.203979| 292: Not an error -457/578 Test #292: plm-reg-itk-rigid-a-check-2 ........... Passed 0.09 sec +457/578 Test #292: plm-reg-itk-rigid-a-check-2 ........... Passed 0.05 sec test 313 Start 313: plm-bsp-mse-c-check 313: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 313: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 313: Test timeout computed to be: 1500 -295: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-1.stdout.txt -295: -- REGEX is AVE *([-0-9.]*) -295: -- LOWER_THRESH is -981.3 -295: -- UPPER_THRESH is -981.1 -295: -- PARSED VALUE=|MIN -1000.000000 AVE -981.187012 MAX 0.000000 NONZERO 54152 NUMVOX 54872| -295: -- PARSED_VALUE=|-981.187012| -295: Not an error -458/578 Test #295: plm-reg-itk-similarity-check-1 ........ Passed 0.09 sec +290: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-1.stdout.txt +290: -- REGEX is AVE *([-0-9.]*) +290: -- LOWER_THRESH is -939.3 +290: -- UPPER_THRESH is -939.1 +290: -- PARSED VALUE=|MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872| +290: -- PARSED_VALUE=|-939.203979| +290: Not an error +458/578 Test #290: plm-reg-itk-rigid-a-check-1 ........... Passed 0.07 sec test 316 Start 316: plm-bsp-mse-g-check @@ -17993,13 +18331,27 @@ 297: -- PARSED VALUE=|MIN -1000.000000 AVE -940.684265 MAX 0.000000 NONZERO 52716 NUMVOX 54872| 297: -- PARSED_VALUE=|-940.684265| 297: Not an error -459/578 Test #297: plm-reg-itk-similarity-check-2 ........ Passed 0.09 sec +459/578 Test #297: plm-reg-itk-similarity-check-2 ........ Passed 0.05 sec test 319 Start 319: plm-bsp-mse-h-check 319: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 319: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 319: Test timeout computed to be: 1500 +295: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-1.stdout.txt +295: -- REGEX is AVE *([-0-9.]*) +295: -- LOWER_THRESH is -981.3 +295: -- UPPER_THRESH is -981.1 +295: -- PARSED VALUE=|MIN -1000.000000 AVE -981.187012 MAX 0.000000 NONZERO 54152 NUMVOX 54872| +295: -- PARSED_VALUE=|-981.187012| +295: Not an error +460/578 Test #295: plm-reg-itk-similarity-check-1 ........ Passed 0.06 sec +test 322 + Start 322: plm-bsp-mse-i-check + +322: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +322: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +322: Test timeout computed to be: 1500 300: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-stats-1.stdout.txt 300: -- REGEX is AVE *([-0-9.]*) 300: -- LOWER_THRESH is -764.0 @@ -18007,13 +18359,20 @@ 300: -- PARSED VALUE=|MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872| 300: -- PARSED_VALUE=|-763.817810| 300: Not an error -460/578 Test #300: plm-reg-itk-bspline-check-1 ........... Passed 0.08 sec -test 322 - Start 322: plm-bsp-mse-i-check - -322: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -322: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -322: Test timeout computed to be: 1500 +304: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-stats-2.stdout.txt +304: -- REGEX is AVE *([-0-9.]*) +304: -- LOWER_THRESH is -755.3 +304: -- UPPER_THRESH is -754.6 +304: -- PARSED VALUE=|MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872| +304: -- PARSED_VALUE=|-754.915161| +304: Not an error +306: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.stdout.txt +306: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) +306: -- LOWER_THRESH is 31.2 +306: -- UPPER_THRESH is 31.3 +306: -- PARSED VALUE=|VF_MAX = 102.433 VF_AVG = 31.2783| +306: -- PARSED_VALUE=|31.2783| +306: Not an error 302: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.stdout.txt 302: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) 302: -- LOWER_THRESH is 31.85 @@ -18021,74 +18380,34 @@ 302: -- PARSED VALUE=|VF_MAX = 97.6986 VF_AVG = 31.9237| 302: -- PARSED_VALUE=|31.9237| 302: Not an error -461/578 Test #302: plm-reg-itk-demons-check-1 ............ Passed 0.08 sec +461/578 Test #300: plm-reg-itk-bspline-check-1 ........... Passed 0.05 sec test 325 Start 325: plm-bsp-mse-k-check 325: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 325: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 325: Test timeout computed to be: 1500 -304: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-stats-2.stdout.txt -304: -- REGEX is AVE *([-0-9.]*) -304: -- LOWER_THRESH is -755.3 -304: -- UPPER_THRESH is -754.6 -304: -- PARSED VALUE=|MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872| -304: -- PARSED_VALUE=|-754.915161| -304: Not an error -462/578 Test #304: plm-reg-itk-demons-check-2 ............ Passed 0.09 sec +462/578 Test #302: plm-reg-itk-demons-check-1 ............ Passed 0.06 sec test 328 Start 328: plm-bsp-mse-l-check 328: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 328: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 328: Test timeout computed to be: 1500 -244: RETVAL: 0 -244: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha -244: -244: STDERR: -244: Not an error -463/578 Test #244: plm-dmap-a ............................ Passed 0.36 sec +463/578 Test #304: plm-reg-itk-demons-check-2 ............ Passed 0.06 sec test 330 Start 330: plm-bsp-mse-o-stats 330: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-o-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 330: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 330: Test timeout computed to be: 1500 -306: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.stdout.txt -306: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) -306: -- LOWER_THRESH is 31.2 -306: -- UPPER_THRESH is 31.3 -306: -- PARSED VALUE=|VF_MAX = 102.433 VF_AVG = 31.2783| -306: -- PARSED_VALUE=|31.2783| -306: Not an error -464/578 Test #306: plm-reg-itk-demons-diff-check-1 ....... Passed 0.11 sec +464/578 Test #306: plm-reg-itk-demons-diff-check-1 ....... Passed 0.06 sec test 332 Start 332: plm-bsp-mse-p-stats 332: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-p-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 332: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 332: Test timeout computed to be: 1500 -308: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.stdout.txt -308: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) -308: -- LOWER_THRESH is 32.65 -308: -- UPPER_THRESH is 32.75 -308: -- PARSED VALUE=|VF_MAX = 112.668 VF_AVG = 32.7138| -308: -- PARSED_VALUE=|32.7138| -308: Not an error -313: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt -313: -- REGEX is AVE *([-0-9.]*) -313: -- LOWER_THRESH is -746.0 -313: -- UPPER_THRESH is -744.5 -313: -- PARSED VALUE=|MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| -313: -- PARSED_VALUE=|-745.347717| -313: Not an error -316: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-stats.stdout.txt -316: -- REGEX is AVE *([-0-9.]*) -316: -- LOWER_THRESH is -746.0 -316: -- UPPER_THRESH is -744.5 -316: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| -316: -- PARSED_VALUE=|-745.347717| -316: Not an error 310: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.stdout.txt 310: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) 310: -- LOWER_THRESH is 31.85 @@ -18096,84 +18415,105 @@ 310: -- PARSED VALUE=|VF_MAX = 109.365 VF_AVG = 31.9237| 310: -- PARSED_VALUE=|31.9237| 310: Not an error -319: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-stats.stdout.txt -319: -- REGEX is AVE *([-0-9.]*) -319: -- LOWER_THRESH is -746.0 -319: -- UPPER_THRESH is -744.5 -319: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| -319: -- PARSED_VALUE=|-745.347717| -319: Not an error -322: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-stats.stdout.txt -322: -- REGEX is AVE *([-0-9.]*) -322: -- LOWER_THRESH is -746.0 -322: -- UPPER_THRESH is -744.5 -322: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| -322: -- PARSED_VALUE=|-745.347717| -322: Not an error -325: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-stats.stdout.txt -325: -- REGEX is AVE *([-0-9.]*) -325: -- LOWER_THRESH is -746.0 -325: -- UPPER_THRESH is -744.5 -325: -- PARSED VALUE=|MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| -325: -- PARSED_VALUE=|-745.347717| -325: Not an error -328: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-stats.stdout.txt -328: -- REGEX is AVE *([-0-9.]*) -328: -- LOWER_THRESH is -746.0 -328: -- UPPER_THRESH is -744.5 -328: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| -328: -- PARSED_VALUE=|-745.347717| -328: Not an error -465/578 Test #308: plm-reg-itk-demons-logd-check-1 ....... Passed 0.12 sec +465/578 Test #310: plm-reg-itk-demons-sym-logd-check-1 ... Passed 0.04 sec test 334 Start 334: plm-bsp-mse-q-stats 334: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-q-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 334: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 334: Test timeout computed to be: 1500 -466/578 Test #310: plm-reg-itk-demons-sym-logd-check-1 ... Passed 0.12 sec +313: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt +313: -- REGEX is AVE *([-0-9.]*) +313: -- LOWER_THRESH is -746.0 +313: -- UPPER_THRESH is -744.5 +313: -- PARSED VALUE=|MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| +313: -- PARSED_VALUE=|-745.347717| +313: Not an error +466/578 Test #313: plm-bsp-mse-c-check ................... Passed 0.04 sec test 336 Start 336: plm-bsp-mse-r-stats 336: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-r-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 336: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 336: Test timeout computed to be: 1500 -467/578 Test #313: plm-bsp-mse-c-check ................... Passed 0.12 sec +308: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.stdout.txt +308: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) +308: -- LOWER_THRESH is 32.65 +308: -- UPPER_THRESH is 32.75 +308: -- PARSED VALUE=|VF_MAX = 112.668 VF_AVG = 32.7138| +308: -- PARSED_VALUE=|32.7138| +308: Not an error +467/578 Test #308: plm-reg-itk-demons-logd-check-1 ....... Passed 0.07 sec test 339 Start 339: plm-bsp-mi-c-check 339: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-114.0" "-DUPPER_THRESH=-113.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 339: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 339: Test timeout computed to be: 1500 -468/578 Test #316: plm-bsp-mse-g-check ................... Passed 0.12 sec +319: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-stats.stdout.txt +319: -- REGEX is AVE *([-0-9.]*) +319: -- LOWER_THRESH is -746.0 +319: -- UPPER_THRESH is -744.5 +319: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| +319: -- PARSED_VALUE=|-745.347717| +319: Not an error +468/578 Test #319: plm-bsp-mse-h-check ................... Passed 0.05 sec test 342 Start 342: plm-bsp-mi-c-2-check 342: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-129.5" "-DUPPER_THRESH=-128.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 342: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 342: Test timeout computed to be: 1500 -469/578 Test #319: plm-bsp-mse-h-check ................... Passed 0.12 sec +316: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-stats.stdout.txt +316: -- REGEX is AVE *([-0-9.]*) +316: -- LOWER_THRESH is -746.0 +316: -- UPPER_THRESH is -744.5 +316: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| +316: -- PARSED_VALUE=|-745.347717| +316: Not an error +469/578 Test #316: plm-bsp-mse-g-check ................... Passed 0.06 sec test 345 Start 345: plm-bsp-mi-k-check 345: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-114.0" "-DUPPER_THRESH=-113.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 345: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 345: Test timeout computed to be: 1500 -470/578 Test #322: plm-bsp-mse-i-check ................... Passed 0.12 sec +322: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-stats.stdout.txt +322: -- REGEX is AVE *([-0-9.]*) +322: -- LOWER_THRESH is -746.0 +322: -- UPPER_THRESH is -744.5 +322: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| +322: -- PARSED_VALUE=|-745.347717| +322: Not an error +470/578 Test #322: plm-bsp-mse-i-check ................... Passed 0.06 sec test 348 Start 348: plm-bsp-gm-k-check 348: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-122.5" "-DUPPER_THRESH=-121.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 348: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 348: Test timeout computed to be: 1500 -471/578 Test #325: plm-bsp-mse-k-check ................... Passed 0.12 sec +325: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-stats.stdout.txt +325: -- REGEX is AVE *([-0-9.]*) +325: -- LOWER_THRESH is -746.0 +325: -- UPPER_THRESH is -744.5 +325: -- PARSED VALUE=|MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| +325: -- PARSED_VALUE=|-745.347717| +325: Not an error +471/578 Test #325: plm-bsp-mse-k-check ................... Passed 0.06 sec test 350 Start 350: plm-bsp-sm-multi-a-stats 350: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-sm-multi-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 350: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 350: Test timeout computed to be: 1500 -472/578 Test #328: plm-bsp-mse-l-check ................... Passed 0.12 sec +328: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-stats.stdout.txt +328: -- REGEX is AVE *([-0-9.]*) +328: -- LOWER_THRESH is -746.0 +328: -- UPPER_THRESH is -744.5 +328: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| +328: -- PARSED_VALUE=|-745.347717| +328: Not an error +472/578 Test #328: plm-bsp-mse-l-check ................... Passed 0.06 sec test 353 Start 353: plm-bsp-openmp-check @@ -18183,17 +18523,12 @@ 330: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 330: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha 330: EXPECTED_ERRNO is -332: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -332: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha -332: EXPECTED_ERRNO is -246: RETVAL: 0 -246: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha -246: -246: STDERR: -246: Not an error 334: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 334: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha 334: EXPECTED_ERRNO is +332: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +332: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha +332: EXPECTED_ERRNO is 336: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 336: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha 336: EXPECTED_ERRNO is @@ -18204,13 +18539,6 @@ 339: -- PARSED VALUE=|MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872| 339: -- PARSED_VALUE=|-113.473007| 339: Not an error -473/578 Test #339: plm-bsp-mi-c-check .................... Passed 0.06 sec -test 355 - Start 355: plm-bsp-resume-stats - -355: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -355: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -355: Test timeout computed to be: 1500 342: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-stats.stdout.txt 342: -- REGEX is AVE *([-0-9.]*) 342: -- LOWER_THRESH is -129.5 @@ -18218,7 +18546,14 @@ 342: -- PARSED VALUE=|MIN -991.894104 AVE -128.919357 MAX 0.000000 NONZERO 48385 NUMVOX 54872| 342: -- PARSED_VALUE=|-128.919357| 342: Not an error -474/578 Test #342: plm-bsp-mi-c-2-check .................. Passed 0.06 sec +473/578 Test #339: plm-bsp-mi-c-check .................... Passed 0.04 sec +test 355 + Start 355: plm-bsp-resume-stats + +355: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +355: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +355: Test timeout computed to be: 1500 +474/578 Test #342: plm-bsp-mi-c-2-check .................. Passed 0.04 sec test 357 Start 357: plm-bsp-logfile-check @@ -18232,63 +18567,30 @@ 345: -- PARSED VALUE=|MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872| 345: -- PARSED_VALUE=|-113.473007| 345: Not an error -475/578 Test #345: plm-bsp-mi-k-check .................... Passed 0.06 sec +475/578 Test #345: plm-bsp-mi-k-check .................... Passed 0.05 sec test 360 Start 360: plm-bsp-ushort-check 360: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=106.6" "-DUPPER_THRESH=107.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 360: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 360: Test timeout computed to be: 1500 -476/578 Test #246: plm-dmap-c ............................ Passed 0.50 sec +348: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-stats.stdout.txt +348: -- REGEX is AVE *([-0-9.]*) +348: -- LOWER_THRESH is -122.5 +348: -- UPPER_THRESH is -121.5 +348: -- PARSED VALUE=|MIN -997.631409 AVE -121.961853 MAX 0.000000 NONZERO 49452 NUMVOX 54872| +348: -- PARSED_VALUE=|-121.961853| +348: Not an error +476/578 Test #348: plm-bsp-gm-k-check .................... Passed 0.05 sec test 363 Start 363: plm-bsp-double-check 363: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=107.6" "-DUPPER_THRESH=108.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 363: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 363: Test timeout computed to be: 1500 -281: RETVAL: 0 -281: STDOUT: plastimatch version 1.9.4 -281: Usage: plastimatch command [options] -281: Commands: -281: add adjust average bbox boundary -281: crop compare compose convert dice -281: diff dmap dose drr dvh -281: fdk fill filter gamma header -281: intersect jacobian lm-warp mabs mask -281: maximum ml-convert multiply probe register -281: resample scale segment sift stats -281: synth synth-vf threshold thumbnail union -281: warp wed xf-convert xf-invert -281: -281: For detailed usage of a specific command, type: -281: plastimatch command -281: -281: STDERR: -281: Not an error -477/578 Test #281: plm-usage ............................. Passed 0.35 sec -test 364 - Start 364: plm-bsp-itk-output - -364: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-itk-output" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-itk-output.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -364: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -364: Test timeout computed to be: 1500 350: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 350: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha 350: EXPECTED_ERRNO is -348: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-stats.stdout.txt -348: -- REGEX is AVE *([-0-9.]*) -348: -- LOWER_THRESH is -122.5 -348: -- UPPER_THRESH is -121.5 -348: -- PARSED VALUE=|MIN -997.631409 AVE -121.961853 MAX 0.000000 NONZERO 49452 NUMVOX 54872| -348: -- PARSED_VALUE=|-121.961853| -348: Not an error -478/578 Test #348: plm-bsp-gm-k-check .................... Passed 0.09 sec -test 367 - Start 367: plm-bsp-char-output-check - -367: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output-stats.stdout.txt" "-DREGEX=MIN *([-0-9.]*)" "-DLOWER_THRESH=-128.1" "-DUPPER_THRESH=-127.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -367: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -367: Test timeout computed to be: 1500 353: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-stats.stdout.txt 353: -- REGEX is AVE *([-0-9.]*) 353: -- LOWER_THRESH is -746.0 @@ -18296,30 +18598,49 @@ 353: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 353: -- PARSED_VALUE=|-745.347717| 353: Not an error -479/578 Test #353: plm-bsp-openmp-check .................. Passed 0.08 sec -test 371 - Start 371: plm-bsp-regularize-none-check - -371: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.31" "-DUPPER_THRESH=0.32" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -371: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -371: Test timeout computed to be: 1500 355: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 355: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha 355: EXPECTED_ERRNO is +477/578 Test #353: plm-bsp-openmp-check .................. Passed 0.05 sec +test 364 + Start 364: plm-bsp-itk-output + +364: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-itk-output" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-itk-output.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +364: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +364: Test timeout computed to be: 1500 357: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-logfile.txt 357: -- REGEX is \[.*, 5] MSE *([-0-9.]*) 357: -- LOWER_THRESH is 281.5 357: -- UPPER_THRESH is 282.5 -357: -- PARSED VALUE=|[ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.023 s ]| +357: -- PARSED VALUE=|[ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.024 s ]| 357: -- PARSED_VALUE=|282.038| -357: Not an error 360: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-stats.stdout.txt 360: -- REGEX is AVE *([-0-9.]*) 360: -- LOWER_THRESH is 106.6 360: -- UPPER_THRESH is 107.6 +357: Not an error 360: -- PARSED VALUE=|MIN 0.000000 AVE 107.313034 MAX 997.000000 NONZERO 44294 NUMVOX 54872| 360: -- PARSED_VALUE=|107.313034| 360: Not an error +244: RETVAL: 0 +244: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha +244: +244: STDERR: +244: Not an error +478/578 Test #357: plm-bsp-logfile-check ................. Passed 0.05 sec +test 367 + Start 367: plm-bsp-char-output-check + +367: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output-stats.stdout.txt" "-DREGEX=MIN *([-0-9.]*)" "-DLOWER_THRESH=-128.1" "-DUPPER_THRESH=-127.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +367: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +367: Test timeout computed to be: 1500 +479/578 Test #360: plm-bsp-ushort-check .................. Passed 0.05 sec +test 371 + Start 371: plm-bsp-regularize-none-check + +371: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.31" "-DUPPER_THRESH=0.32" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +371: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +371: Test timeout computed to be: 1500 363: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-stats.stdout.txt 363: -- REGEX is AVE *([-0-9.]*) 363: -- LOWER_THRESH is 107.6 @@ -18327,21 +18648,43 @@ 363: -- PARSED VALUE=|MIN 0.000000 AVE 108.147682 MAX 998.045227 NONZERO 46833 NUMVOX 54872| 363: -- PARSED_VALUE=|108.147682| 363: Not an error -480/578 Test #357: plm-bsp-logfile-check ................. Passed 0.08 sec +281: RETVAL: 0 +281: STDOUT: plastimatch version 1.9.4 +281: Usage: plastimatch command [options] +281: Commands: +281: add adjust average bbox boundary +281: crop compare compose convert dice +281: diff dmap dose drr dvh +281: fdk fill filter gamma header +281: intersect jacobian lm-warp mabs mask +281: maximum ml-convert multiply probe register +281: resample scale segment sift stats +281: synth synth-vf threshold thumbnail union +281: warp wed xf-convert xf-invert +281: +281: For detailed usage of a specific command, type: +281: plastimatch command +281: +281: STDERR: +281: Not an error +364: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +364: PARMS is /build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-itk-output.txt +364: EXPECTED_ERRNO is +480/578 Test #244: plm-dmap-a ............................ Passed 0.37 sec test 374 Start 374: plm-bsp-regularize-analytic-check 374: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.415" "-DUPPER_THRESH=0.425" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 374: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 374: Test timeout computed to be: 1500 -481/578 Test #360: plm-bsp-ushort-check .................. Passed 0.07 sec +481/578 Test #281: plm-usage ............................. Passed 0.27 sec test 377 Start 377: plm-bsp-regularize-numeric-check 377: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.440" "-DUPPER_THRESH=0.445" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 377: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 377: Test timeout computed to be: 1500 -482/578 Test #363: plm-bsp-double-check .................. Passed 0.07 sec +482/578 Test #363: plm-bsp-double-check .................. Passed 0.09 sec test 378 Start 378: plm-bsp-landmark-a @@ -18362,23 +18705,6 @@ 381: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 381: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 381: Test timeout computed to be: 1500 -364: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -364: PARMS is /build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-itk-output.txt -364: EXPECTED_ERRNO is -374: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-stats.stdout.txt -374: -- REGEX is MINJAC *([-0-9.]*) -374: -- LOWER_THRESH is 0.415 -374: -- UPPER_THRESH is 0.425 -374: -- PARSED VALUE=|Jacobian: MINJAC 0.419027 MAXJAC 1.04996| -374: -- PARSED_VALUE=|0.419027| -374: Not an error -484/578 Test #374: plm-bsp-regularize-analytic-check ..... Passed 0.04 sec -test 384 - Start 384: plm-bsp-landmark-c-check - -384: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -384: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -384: Test timeout computed to be: 1500 371: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-stats.stdout.txt 371: -- REGEX is MINJAC *([-0-9.]*) 371: -- LOWER_THRESH is 0.31 @@ -18386,13 +18712,13 @@ 371: -- PARSED VALUE=|Jacobian: MINJAC 0.315393 MAXJAC 1.06557| 371: -- PARSED_VALUE=|0.315393| 371: Not an error -485/578 Test #371: plm-bsp-regularize-none-check ......... Passed 0.08 sec -test 387 - Start 387: plm-bsp-landmark-d-check +484/578 Test #371: plm-bsp-regularize-none-check ......... Passed 0.06 sec +test 384 + Start 384: plm-bsp-landmark-c-check -387: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -387: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -387: Test timeout computed to be: 1500 +384: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +384: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +384: Test timeout computed to be: 1500 377: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-stats.stdout.txt 377: -- REGEX is MINJAC *([-0-9.]*) 377: -- LOWER_THRESH is 0.440 @@ -18400,9 +18726,23 @@ 377: -- PARSED VALUE=|Jacobian: MINJAC 0.443734 MAXJAC 1.03502| 377: -- PARSED_VALUE=|0.443734| 377: Not an error +485/578 Test #377: plm-bsp-regularize-numeric-check ...... Passed 0.06 sec +test 387 + Start 387: plm-bsp-landmark-d-check + +387: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +387: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +387: Test timeout computed to be: 1500 378: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 378: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a.txt 378: EXPECTED_ERRNO is +374: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-stats.stdout.txt +374: -- REGEX is MINJAC *([-0-9.]*) +374: -- LOWER_THRESH is 0.415 +374: -- UPPER_THRESH is 0.425 +374: -- PARSED VALUE=|Jacobian: MINJAC 0.419027 MAXJAC 1.04996| +374: -- PARSED_VALUE=|0.419027| +374: Not an error 381: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-stats.stdout.txt 381: -- REGEX is AVE *([-0-9.]*) 381: -- LOWER_THRESH is -991.5 @@ -18410,34 +18750,46 @@ 381: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| 381: -- PARSED_VALUE=|-991.355164| 381: Not an error -486/578 Test #377: plm-bsp-regularize-numeric-check ...... Passed 0.08 sec +384: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt +384: -- REGEX is AVE *([-0-9.]*) +384: -- LOWER_THRESH is -991.5 +384: -- UPPER_THRESH is -991.0 +384: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| +384: -- PARSED_VALUE=|-991.355164| +384: Not an error +486/578 Test #374: plm-bsp-regularize-analytic-check ..... Passed 0.08 sec test 390 Start 390: plm-bsp-landmark-e-check 390: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 390: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 390: Test timeout computed to be: 1500 -487/578 Test #381: plm-bsp-landmark-b-check .............. Passed 0.06 sec +487/578 Test #381: plm-bsp-landmark-b-check .............. Passed 0.04 sec test 393 Start 393: plm-bsp-dcos-a-check 393: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 393: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 393: Test timeout computed to be: 1500 -384: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt -384: -- REGEX is AVE *([-0-9.]*) -384: -- LOWER_THRESH is -991.5 -384: -- UPPER_THRESH is -991.0 -384: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| -384: -- PARSED_VALUE=|-991.355164| -384: Not an error -488/578 Test #384: plm-bsp-landmark-c-check .............. Passed 0.07 sec +488/578 Test #384: plm-bsp-landmark-c-check .............. Passed 0.04 sec test 396 Start 396: plm-bsp-dcos-b-check 396: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 396: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 396: Test timeout computed to be: 1500 +246: RETVAL: 0 +246: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha +246: +246: STDERR: +246: Not an error +489/578 Test #246: plm-dmap-c ............................ Passed 0.46 sec +test 399 + Start 399: plm-bsp-dcos-c-check + +399: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +399: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +399: Test timeout computed to be: 1500 387: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt 387: -- REGEX is AVE *([-0-9.]*) 387: -- LOWER_THRESH is -991.5 @@ -18445,13 +18797,13 @@ 387: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| 387: -- PARSED_VALUE=|-991.355164| 387: Not an error -489/578 Test #387: plm-bsp-landmark-d-check .............. Passed 0.08 sec -test 399 - Start 399: plm-bsp-dcos-c-check +490/578 Test #387: plm-bsp-landmark-d-check .............. Passed 0.04 sec +test 402 + Start 402: plm-bsp-dcos-d-check -399: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -399: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -399: Test timeout computed to be: 1500 +402: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +402: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +402: Test timeout computed to be: 1500 390: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-stats.stdout.txt 390: -- REGEX is AVE *([-0-9.]*) 390: -- LOWER_THRESH is -991.5 @@ -18459,20 +18811,6 @@ 390: -- PARSED VALUE=|MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872| 390: -- PARSED_VALUE=|-991.396057| 390: Not an error -490/578 Test #390: plm-bsp-landmark-e-check .............. Passed 0.06 sec -test 402 - Start 402: plm-bsp-dcos-d-check - -402: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -402: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -402: Test timeout computed to be: 1500 -396: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt -396: -- REGEX is AVE *([-0-9.]*) -396: -- LOWER_THRESH is -796.8 -396: -- UPPER_THRESH is -795.8 -396: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| -396: -- PARSED_VALUE=|-796.376221| -396: Not an error 393: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-stats.stdout.txt 393: -- REGEX is AVE *([-0-9.]*) 393: -- LOWER_THRESH is -816 @@ -18480,20 +18818,34 @@ 393: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| 393: -- PARSED_VALUE=|-815.591492| 393: Not an error -491/578 Test #396: plm-bsp-dcos-b-check .................. Passed 0.04 sec +396: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt +396: -- REGEX is AVE *([-0-9.]*) +396: -- LOWER_THRESH is -796.8 +396: -- UPPER_THRESH is -795.8 +396: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| +396: -- PARSED_VALUE=|-796.376221| +396: Not an error +491/578 Test #390: plm-bsp-landmark-e-check .............. Passed 0.05 sec test 405 Start 405: plm-bsp-dcos-e-check 405: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 405: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 405: Test timeout computed to be: 1500 -492/578 Test #393: plm-bsp-dcos-a-check .................. Passed 0.06 sec +492/578 Test #393: plm-bsp-dcos-a-check .................. Passed 0.05 sec test 408 Start 408: plm-bsp-dcos-f-check 408: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 408: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 408: Test timeout computed to be: 1500 +493/578 Test #396: plm-bsp-dcos-b-check .................. Passed 0.05 sec +test 411 + Start 411: plm-reg-multi-a-check + +411: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-22" "-DUPPER_THRESH=-18" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +411: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +411: Test timeout computed to be: 1500 399: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt 399: -- REGEX is AVE *([-0-9.]*) 399: -- LOWER_THRESH is -816 @@ -18501,39 +18853,13 @@ 399: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| 399: -- PARSED_VALUE=|-815.591492| 399: Not an error -330: RETVAL: 0 -330: STDOUT: MIN -999.989990 AVE -743.121460 MAX 0.000000 NONZERO 46674 NUMVOX 54872 -330: -330: STDERR: -330: Not an error -402: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-stats.stdout.txt -402: -- REGEX is AVE *([-0-9.]*) -402: -- LOWER_THRESH is -796.8 -402: -- UPPER_THRESH is -795.8 -402: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| -402: -- PARSED_VALUE=|-796.376221| -402: Not an error -493/578 Test #330: plm-bsp-mse-o-stats ................... Passed 0.38 sec -test 411 - Start 411: plm-reg-multi-a-check - -411: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-22" "-DUPPER_THRESH=-18" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -411: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -411: Test timeout computed to be: 1500 -494/578 Test #399: plm-bsp-dcos-c-check .................. Passed 0.06 sec +494/578 Test #399: plm-bsp-dcos-c-check .................. Passed 0.05 sec test 414 Start 414: plm-reg-multi-b-check 414: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-987" "-DUPPER_THRESH=-984" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 414: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 414: Test timeout computed to be: 1500 -495/578 Test #402: plm-bsp-dcos-d-check .................. Passed 0.06 sec -test 417 - Start 417: plm-reg-dv-itk-translation-check - -417: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-467.1" "-DUPPER_THRESH=-366.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -417: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -417: Test timeout computed to be: 1500 405: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-stats.stdout.txt 405: -- REGEX is AVE *([-0-9.]*) 405: -- LOWER_THRESH is -816 @@ -18541,25 +18867,27 @@ 405: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| 405: -- PARSED_VALUE=|-815.591492| 405: Not an error -496/578 Test #405: plm-bsp-dcos-e-check .................. Passed 0.06 sec +402: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-stats.stdout.txt +402: -- REGEX is AVE *([-0-9.]*) +402: -- LOWER_THRESH is -796.8 +402: -- UPPER_THRESH is -795.8 +402: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| +402: -- PARSED_VALUE=|-796.376221| +402: Not an error +495/578 Test #405: plm-bsp-dcos-e-check .................. Passed 0.04 sec +test 417 + Start 417: plm-reg-dv-itk-translation-check + +417: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-467.1" "-DUPPER_THRESH=-366.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +417: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +417: Test timeout computed to be: 1500 +496/578 Test #402: plm-bsp-dcos-d-check .................. Passed 0.06 sec test 418 Start 418: plm-reg-roi-a 418: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 418: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 418: Test timeout computed to be: 1500 -334: RETVAL: 0 -334: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 -334: -334: STDERR: -334: Not an error -497/578 Test #334: plm-bsp-mse-q-stats ................... Passed 0.39 sec -test 419 - Start 419: plm-reg-roi-b - -419: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -419: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -419: Test timeout computed to be: 1500 408: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-stats.stdout.txt 408: -- REGEX is AVE *([-0-9.]*) 408: -- LOWER_THRESH is -796.8 @@ -18567,7 +18895,21 @@ 408: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| 408: -- PARSED_VALUE=|-796.376221| 408: Not an error -498/578 Test #408: plm-bsp-dcos-f-check .................. Passed 0.08 sec +414: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-stats.stdout.txt +414: -- REGEX is AVE *([-0-9.]*) +414: -- LOWER_THRESH is -987 +414: -- UPPER_THRESH is -984 +414: -- PARSED VALUE=|MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872| +414: -- PARSED_VALUE=|-985.762146| +414: Not an error +497/578 Test #408: plm-bsp-dcos-f-check .................. Passed 0.05 sec +test 419 + Start 419: plm-reg-roi-b + +419: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +419: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +419: Test timeout computed to be: 1500 +498/578 Test #414: plm-reg-multi-b-check ................. Passed 0.04 sec test 420 Start 420: plm-reg-roi-c @@ -18581,7 +18923,33 @@ 411: -- PARSED VALUE=|Mean: -20.000 -0.000 -0.000| 411: -- PARSED_VALUE=|-20.000| 411: Not an error -499/578 Test #411: plm-reg-multi-a-check ................. Passed 0.08 sec +205: RETVAL: 0 +205: STDOUT: Trying to load ss_list: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt +205: Setting PIH from M_IMG +205: PIH is: +205: Origin = -25.0000 -25.0000 -25.0000 +205: Size = 38 38 38 +205: Spacing = 1.3158 1.3158 1.3158 +205: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +205: Rt_study_warp: Convert ss_img to cxt. +205: Doing extraction +205: Rt_study_warp: Apply dicom_dir. +205: Rt_study_warp: Set geometry from PIH. +205: Rt_study_warp: Set rasterization geometry. +205: rast_dim = 512 512 14 +205: rast_offset = -10.3618 -10.3618 -9.21053 +205: rast_spacing = 0.0404759 0.0404759 1.31579 +205: Rt_study_warp: warp and save ss. +205: Warp_and_save_ss: save_ss_img +205: Rt_study_warp: Save dicom. +205: Keyholizing structure 0. +205: Finished! +205: +205: STDERR: +418: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +418: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a.txt +418: EXPECTED_ERRNO is +499/578 Test #411: plm-reg-multi-a-check ................. Passed 0.06 sec test 421 Start 421: plm-reg-roi-d @@ -18595,71 +18963,60 @@ 417: -- PARSED VALUE=|MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872| 417: -- PARSED_VALUE=|-467.031616| 417: Not an error -414: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-stats.stdout.txt -414: -- REGEX is AVE *([-0-9.]*) -414: -- LOWER_THRESH is -987 -414: -- UPPER_THRESH is -984 -414: -- PARSED VALUE=|MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872| -414: -- PARSED_VALUE=|-985.762146| -414: Not an error -418: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -418: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a.txt -418: EXPECTED_ERRNO is -419: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -419: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b.txt -419: EXPECTED_ERRNO is -500/578 Test #414: plm-reg-multi-b-check ................. Passed 0.08 sec +332: RETVAL: 0 +332: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 +332: +332: STDERR: +332: Not an error +334: RETVAL: 0 +334: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 +334: +334: STDERR: +334: Not an error +500/578 Test #417: plm-reg-dv-itk-translation-check ...... Passed 0.03 sec test 422 Start 422: plm-reg-roi-e 422: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 422: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 422: Test timeout computed to be: 1500 -501/578 Test #417: plm-reg-dv-itk-translation-check ...... Passed 0.09 sec +501/578 Test #332: plm-bsp-mse-p-stats ................... Passed 0.35 sec test 423 Start 423: plm-reg-stiffness-a 423: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-stiffness-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=register;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 423: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 423: Test timeout computed to be: 1500 -421: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -421: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d.txt -421: EXPECTED_ERRNO is -350: RETVAL: 0 -350: STDOUT: MIN -999.995789 AVE -886.449097 MAX -1.453729 NONZERO 54872 NUMVOX 54872 -350: -350: STDERR: -350: Not an error -502/578 Test #350: plm-bsp-sm-multi-a-stats .............. Passed 0.41 sec +502/578 Test #334: plm-bsp-mse-q-stats ................... Passed 0.35 sec test 426 Start 426: plm-reg-process-a-check 426: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-491.0" "-DUPPER_THRESH=-490.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 426: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 426: Test timeout computed to be: 1500 -420: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -420: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c.txt -420: EXPECTED_ERRNO is -332: RETVAL: 0 -332: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 -332: -332: STDERR: -332: Not an error -503/578 Test #332: plm-bsp-mse-p-stats ................... Passed 0.50 sec +205: Not an error +503/578 Test #205: plm-convert-dicom-donut-c ............. Passed 0.73 sec test 429 Start 429: plm-reg-trans-a-check 429: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-661.75" "-DUPPER_THRESH=-661.65" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 429: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 429: Test timeout computed to be: 1500 -426: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a-stats.stdout.txt -426: -- REGEX is AVE *([-0-9.]*) -426: -- LOWER_THRESH is -491.0 -426: -- UPPER_THRESH is -490.0 -426: -- PARSED VALUE=|MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872| -426: -- PARSED_VALUE=|-490.647552| -426: Not an error -504/578 Test #426: plm-reg-process-a-check ............... Passed 0.03 sec +419: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +419: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b.txt +419: EXPECTED_ERRNO is +421: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +421: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d.txt +421: EXPECTED_ERRNO is +330: RETVAL: 0 +330: STDOUT: MIN -999.989990 AVE -743.121460 MAX 0.000000 NONZERO 46674 NUMVOX 54872 +330: +330: STDERR: +330: Not an error +420: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +420: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c.txt +420: EXPECTED_ERRNO is +504/578 Test #330: plm-bsp-mse-o-stats ................... Passed 0.40 sec test 432 Start 432: plm-reg-trans-b-check @@ -18669,6 +19026,13 @@ 422: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 422: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e.txt 422: EXPECTED_ERRNO is +426: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a-stats.stdout.txt +426: -- REGEX is AVE *([-0-9.]*) +426: -- LOWER_THRESH is -491.0 +426: -- UPPER_THRESH is -490.0 +426: -- PARSED VALUE=|MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872| +426: -- PARSED_VALUE=|-490.647552| +426: Not an error 423: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 423: PARMS is register;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a.txt 423: EXPECTED_ERRNO is @@ -18679,27 +19043,36 @@ 429: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872| 429: -- PARSED_VALUE=|-661.690491| 429: Not an error -432: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b-stats.stdout.txt -432: -- REGEX is AVE *([-0-9.]*) -432: -- LOWER_THRESH is -661.75 -432: -- UPPER_THRESH is -661.65 -432: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872| -432: -- PARSED_VALUE=|-661.690491| -432: Not an error -505/578 Test #429: plm-reg-trans-a-check ................. Passed 0.06 sec +505/578 Test #429: plm-reg-trans-a-check ................. Passed 0.03 sec test 435 Start 435: plm-reg-trans-mi-a-check 435: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-612.75" "-DUPPER_THRESH=-612.60" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 435: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 435: Test timeout computed to be: 1500 -506/578 Test #432: plm-reg-trans-b-check ................. Passed 0.06 sec +350: RETVAL: 0 +350: STDOUT: MIN -999.995789 AVE -886.449097 MAX -1.453729 NONZERO 54872 NUMVOX 54872 +350: +350: STDERR: +506/578 Test #426: plm-reg-process-a-check ............... Passed 0.05 sec test 438 Start 438: plm-reg-autores-a-check 438: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-597.6" "-DUPPER_THRESH=-597.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 438: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 438: Test timeout computed to be: 1500 +350: Not an error +336: RETVAL: 0 +336: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 +336: +336: STDERR: +507/578 Test #350: plm-bsp-sm-multi-a-stats .............. Passed 0.37 sec +test 441 + Start 441: plm-reg-autores-b-check + +441: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-597.5" "-DUPPER_THRESH=-597.4" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +441: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +441: Test timeout computed to be: 1500 435: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a-stats.stdout.txt 435: -- REGEX is AVE *([-0-9.]*) 435: -- LOWER_THRESH is -612.75 @@ -18707,130 +19080,58 @@ 435: -- PARSED VALUE=|MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872| 435: -- PARSED_VALUE=|-612.681030| 435: Not an error -438: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a-stats.stdout.txt -438: -- REGEX is AVE *([-0-9.]*) -438: -- LOWER_THRESH is -597.6 -438: -- UPPER_THRESH is -597.5 -438: -- PARSED VALUE=|MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872| -438: -- PARSED_VALUE=|-597.535889| -438: Not an error -507/578 Test #438: plm-reg-autores-a-check ............... Passed 0.03 sec -test 441 - Start 441: plm-reg-autores-b-check - -441: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-597.5" "-DUPPER_THRESH=-597.4" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -441: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -441: Test timeout computed to be: 1500 -508/578 Test #435: plm-reg-trans-mi-a-check .............. Passed 0.05 sec +336: Not an error +508/578 Test #435: plm-reg-trans-mi-a-check .............. Passed 0.03 sec test 442 Start 442: plm-reg-point-dmap-a 442: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-point-dmap-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 442: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 442: Test timeout computed to be: 1500 -336: RETVAL: 0 -336: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 -336: -336: STDERR: -336: Not an error -355: RETVAL: 0 -355: STDOUT: MIN -999.977539 AVE -731.734009 MAX 0.000000 NONZERO 46415 NUMVOX 54872 -355: -355: STDERR: -355: Not an error -509/578 Test #336: plm-bsp-mse-r-stats ................... Passed 0.60 sec +432: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b-stats.stdout.txt +432: -- REGEX is AVE *([-0-9.]*) +432: -- LOWER_THRESH is -661.75 +432: -- UPPER_THRESH is -661.65 +432: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872| +432: -- PARSED_VALUE=|-661.690491| +432: Not an error +509/578 Test #336: plm-bsp-mse-r-stats ................... Passed 0.43 sec test 445 Start 445: plm-compose-a-warp 445: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a-warp" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 445: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 445: Test timeout computed to be: 1500 -510/578 Test #355: plm-bsp-resume-stats .................. Passed 0.55 sec +510/578 Test #432: plm-reg-trans-b-check ................. Passed 0.04 sec test 447 Start 447: plm-compose-a-check 447: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=13.75" "-DUPPER_THRESH=13.85" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 447: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 447: Test timeout computed to be: 1500 -441: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b-stats.stdout.txt -441: -- REGEX is AVE *([-0-9.]*) -441: -- LOWER_THRESH is -597.5 -441: -- UPPER_THRESH is -597.4 -441: -- PARSED VALUE=|MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872| -441: -- PARSED_VALUE=|-597.450806| -441: Not an error -511/578 Test #441: plm-reg-autores-b-check ............... Passed 0.05 sec +355: RETVAL: 0 +355: STDOUT: MIN -999.977539 AVE -731.734009 MAX 0.000000 NONZERO 46415 NUMVOX 54872 +355: +355: STDERR: +355: Not an error +438: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a-stats.stdout.txt +438: -- REGEX is AVE *([-0-9.]*) +438: -- LOWER_THRESH is -597.6 +438: -- UPPER_THRESH is -597.5 +438: -- PARSED VALUE=|MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872| +438: -- PARSED_VALUE=|-597.535889| +438: Not an error +445: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +445: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha +445: EXPECTED_ERRNO is +511/578 Test #355: plm-bsp-resume-stats .................. Passed 0.40 sec test 449 Start 449: plm-compose-b-warp 449: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b-warp" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 449: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 449: Test timeout computed to be: 1500 -364: RETVAL: 0 -364: STDOUT: Loading fixed image [0]: gauss-1.mha -364: Loading moving image [0]: gauss-2.mha -364: Launching registration worker thread -364: Inside registration worker thread -364: Doing registration stage -364: [1] xf_in->m_type = 0, xf_out->m_type = 0 -364: RESAMPLE 1 1: (2 2 2), (2 2 2) -364: RESAMPLE 1 1: (2 2 2), (2 2 2) -364: volume_calc_grad complete. -364: bspline_xform_initialize -364: rdims = (2,2,2) -364: vox_per_rgn = (11,11,11) -364: cdims = (5 5 5) -364: Algorithm flavor = h -364: Threading = 0 -364: >> Checking JH allocation -364: BSPLINE PARMS -364: max_its = 5 -364: max_feval = 5 -364: BSPLINE XFORM HEADER -364: vox_per_rgn = 11 11 11 -364: roi_offset = 0 0 0 -364: roi_dim = 19 19 19 -364: img_dc = 1 0 0 0 1 0 0 0 1 -364: BST METRICS -364: MET 110100 MSE 1.000000 -364: Setting nmax, mmax = 375 21 -364: >>> START -364: This problem is unconstrained. -364: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.016 s ] -364: CMIN 0.00 CAVG 0.00 CMAX 0.00 -364: LSD 0.00 -364: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.020 s ] -364: CMIN -0.07 CAVG 0.01 CMAX 0.68 -364: LSD 1.00 -364: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.004 s ] -364: CMIN -0.35 CAVG 0.05 CMAX 3.40 -364: LSD 5.00 -364: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.004 s ] -364: CMIN -1.48 CAVG 0.20 CMAX 14.26 -364: LSD 21.00 -364: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.004 s ] -364: CMIN -1.74 CAVG 0.44 CMAX 32.50 -364: LSD 27.95 -364: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.004 s ] -364: CMIN -1.73 CAVG 0.34 CMAX 23.99 -364: LSD 13.11 -364: [2] xf_out->m_type = 9, xf_in->m_type = 0 -364: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -364: bspline_xform_initialize -364: rdims = (2,2,2) -364: vox_per_rgn = (22,22,22) -364: cdims = (5 5 5) -364: ** Registration worker thread finished. -364: Writing transformation ... -364: Load: 0.043828 -364: Run: 0.11714 -364: Save: 0.0050869 -364: Total: 0.166055 -364: Finished! -364: -364: STDERR: -364: Not an error -512/578 Test #364: plm-bsp-itk-output .................... Passed 0.54 sec +512/578 Test #438: plm-reg-autores-a-check ............... Passed 0.07 sec test 451 Start 451: plm-compose-b-check @@ -18840,12 +19141,13 @@ 442: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 442: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a.txt 442: EXPECTED_ERRNO is -445: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -445: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha -445: EXPECTED_ERRNO is -449: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -449: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha -449: EXPECTED_ERRNO is +441: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b-stats.stdout.txt +441: -- REGEX is AVE *([-0-9.]*) +441: -- LOWER_THRESH is -597.5 +441: -- UPPER_THRESH is -597.4 +441: -- PARSED VALUE=|MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872| +441: -- PARSED_VALUE=|-597.450806| +441: Not an error 447: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-stats.stdout.txt 447: -- REGEX is Mean: *([-0-9.]*) 447: -- LOWER_THRESH is 13.75 @@ -18853,13 +19155,23 @@ 447: -- PARSED VALUE=|Mean: 13.794 -0.035 -0.034| 447: -- PARSED_VALUE=|13.794| 447: Not an error -513/578 Test #447: plm-compose-a-check ................... Passed 0.06 sec +513/578 Test #441: plm-reg-autores-b-check ............... Passed 0.06 sec test 453 Start 453: plm-compose-c-warp 453: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c-warp" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 453: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 453: Test timeout computed to be: 1500 +449: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +449: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha +449: EXPECTED_ERRNO is +514/578 Test #447: plm-compose-a-check ................... Passed 0.05 sec +test 455 + Start 455: plm-compose-c-check + +455: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=12.5" "-DUPPER_THRESH=12.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +455: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +455: Test timeout computed to be: 1500 451: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-stats.stdout.txt 451: -- REGEX is Mean: *([-0-9.]*) 451: -- LOWER_THRESH is 13.75 @@ -18867,13 +19179,13 @@ 451: -- PARSED VALUE=|Mean: 13.794 -0.035 -0.034| 451: -- PARSED_VALUE=|13.794| 451: Not an error -514/578 Test #451: plm-compose-b-check ................... Passed 0.06 sec -test 455 - Start 455: plm-compose-c-check +515/578 Test #451: plm-compose-b-check ................... Passed 0.04 sec +test 458 + Start 458: plm-resample-a-check -455: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=12.5" "-DUPPER_THRESH=12.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -455: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -455: Test timeout computed to be: 1500 +458: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-879.0" "-DUPPER_THRESH=-878.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +458: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +458: Test timeout computed to be: 1500 453: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 453: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha 453: EXPECTED_ERRNO is @@ -18884,13 +19196,13 @@ 455: -- PARSED VALUE=|Mean: 12.523 -0.008 -0.008| 455: -- PARSED_VALUE=|12.523| 455: Not an error -515/578 Test #455: plm-compose-c-check ................... Passed 0.05 sec -test 458 - Start 458: plm-resample-a-check +516/578 Test #455: plm-compose-c-check ................... Passed 0.08 sec +test 461 + Start 461: plm-resample-b-check -458: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-879.0" "-DUPPER_THRESH=-878.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -458: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -458: Test timeout computed to be: 1500 +461: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-879.0" "-DUPPER_THRESH=-878.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +461: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +461: Test timeout computed to be: 1500 458: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a-stats.stdout.txt 458: -- REGEX is AVE *([-0-9.]*) 458: -- LOWER_THRESH is -879.0 @@ -18898,13 +19210,6 @@ 458: -- PARSED VALUE=|MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859| 458: -- PARSED_VALUE=|-878.686035| 458: Not an error -516/578 Test #458: plm-resample-a-check .................. Passed 0.04 sec -test 461 - Start 461: plm-resample-b-check - -461: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-879.0" "-DUPPER_THRESH=-878.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -461: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -461: Test timeout computed to be: 1500 461: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b-stats.stdout.txt 461: -- REGEX is AVE *([-0-9.]*) 461: -- LOWER_THRESH is -879.0 @@ -18912,136 +19217,84 @@ 461: -- PARSED VALUE=|MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000| 461: -- PARSED_VALUE=|-878.621277| 461: Not an error -517/578 Test #461: plm-resample-b-check .................. Passed 0.10 sec +517/578 Test #458: plm-resample-a-check .................. Passed 0.09 sec test 464 Start 464: plm-resample-c-check 464: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=6.67" "-DUPPER_THRESH=6.74" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 464: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 464: Test timeout computed to be: 1500 -464: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-stats.stdout.txt -464: -- REGEX is Mean: *([-0-9.]*) -464: -- LOWER_THRESH is 6.67 -464: -- UPPER_THRESH is 6.74 -464: -- PARSED VALUE=|Mean: 6.707 -0.405 -0.405| -464: -- PARSED_VALUE=|6.707| -464: Not an error -518/578 Test #464: plm-resample-c-check .................. Passed 0.10 sec +518/578 Test #461: plm-resample-b-check .................. Passed 0.04 sec test 467 Start 467: plm-scale-a-check 467: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-3.735" "-DUPPER_THRESH=-3.730" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 467: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 467: Test timeout computed to be: 1500 -467: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a-stats.stdout.txt -467: -- REGEX is AVE *([-0-9.]*) -467: -- LOWER_THRESH is -3.735 -467: -- UPPER_THRESH is -3.730 -467: -- PARSED VALUE=|MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872| -467: -- PARSED_VALUE=|-3.732322| -467: Not an error -519/578 Test #467: plm-scale-a-check ..................... Passed 0.07 sec -test 470 - Start 470: plm-scale-vf-a-check - -470: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=4.000" "-DUPPER_THRESH=4.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -470: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -470: Test timeout computed to be: 1500 -420: RETVAL: 0 -420: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha -420: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha -420: Loading fixed roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha -420: Launching registration worker thread -420: Inside registration worker thread -420: Doing registration stage -420: [1] xf_in->m_type = 0, xf_out->m_type = 0 -420: RESAMPLE 1 1: (2 2 2), (2 2 2) -420: RESAMPLE 1 1: (2 2 2), (2 2 2) -420: volume_calc_grad complete. -420: bspline_xform_initialize -420: rdims = (3,5,3) -420: vox_per_rgn = (5,5,5) -420: cdims = (6 8 6) -420: Algorithm flavor = g -420: Threading = 0 -420: Regularization: flavor = c lambda = 0.100000 -420: Regularizer initialized -420: >> Checking JH allocation -420: BSPLINE PARMS -420: max_its = 10 -420: max_feval = 10 -420: BSPLINE XFORM HEADER -420: vox_per_rgn = 5 5 5 -420: roi_offset = 0 0 0 -420: roi_dim = 15 25 15 -420: img_dc = 1 0 0 0 1 0 0 0 1 -420: BST METRICS -420: MET 110110 MSE 1.000000 -420: Setting nmax, mmax = 864 31 -420: >>> START -420: This problem is unconstrained. -420: [ 0, 0] SCORE 0.0000000 NV 1690 GM 0.000 GN 0 [ 0.071 s ] -420: MSE 0.0000000 RM 0.000 [ 0.041 | 0.030 ] -420: CMIN 0.00 CAVG 0.00 CMAX 0.00 -420: LSD 0.00 -420: * * * -420: -420: Tit = total number of iterations -420: Tnf = total number of function evaluations -420: Tnint = total number of segments explored during Cauchy searches -420: Skip = number of BFGS updates skipped -420: Nact = number of active bounds at final generalized Cauchy point -420: Projg = norm of the final projected gradient -420: F = final function value -420: -420: * * * -420: N Tit Tnf Tnint Skip Nact Projg F -420: 864 0 1 0 0 0 0 0 -420: CONVERGENCE: NORM_OF_PROJECTED_GRADIENT_<=_PGTOL -420: Total User time 0 seconds. -420: [2] xf_out->m_type = 9, xf_in->m_type = 0 -420: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -420: bspline_xform_initialize -420: rdims = (3,5,3) -420: vox_per_rgn = (10,10,10) -420: cdims = (6 8 6) -420: ** Registration worker thread finished. -420: Writing transformation ... -420: Warping... -420: Running: plm_warp_native -420: Converting input image... -420: Converting xform... -420: bspline_xform_initialize -420: rdims = (3,5,3) -420: vox_per_rgn = (10,10,10) -420: cdims = (6 8 6) -420: Creating output vf... -420: Creating output volume... -420: Running native warper... -420: bspline_warp complete. -420: Back convert to original type... -420: > Convert vf to itk -420: > Conversion complete. -420: plm_warp_native is complete. -420: Saving image... -420: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c-img.mha -420: Saving vf... -420: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c-vf.mha -420: Load: 0.083334 -420: Run: 0.119857 -420: Save: 0.0594199 -420: Total: 0.262611 -420: Finished! -420: -420: STDERR: -420: Not an error -520/578 Test #420: plm-reg-roi-c ......................... Passed 0.68 sec -test 476 - Start 476: plm-thumbnail-a-check - -476: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=76.85" "-DUPPER_THRESH=76.95" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -476: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -476: Test timeout computed to be: 1500 +364: RETVAL: 0 +364: STDOUT: Loading fixed image [0]: gauss-1.mha +364: Loading moving image [0]: gauss-2.mha +364: Launching registration worker thread +364: Inside registration worker thread +364: Doing registration stage +364: [1] xf_in->m_type = 0, xf_out->m_type = 0 +364: RESAMPLE 1 1: (2 2 2), (2 2 2) +364: RESAMPLE 1 1: (2 2 2), (2 2 2) +364: volume_calc_grad complete. +364: bspline_xform_initialize +364: rdims = (2,2,2) +364: vox_per_rgn = (11,11,11) +364: cdims = (5 5 5) +364: Algorithm flavor = h +364: Threading = 0 +364: >> Checking JH allocation +364: BSPLINE PARMS +364: max_its = 5 +364: max_feval = 5 +364: BSPLINE XFORM HEADER +364: vox_per_rgn = 11 11 11 +364: roi_offset = 0 0 0 +364: roi_dim = 19 19 19 +364: img_dc = 1 0 0 0 1 0 0 0 1 +364: BST METRICS +364: MET 110100 MSE 1.000000 +364: Setting nmax, mmax = 375 21 +364: >>> START +364: This problem is unconstrained. +364: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.011 s ] +364: CMIN 0.00 CAVG 0.00 CMAX 0.00 +364: LSD 0.00 +364: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.003 s ] +364: CMIN -0.07 CAVG 0.01 CMAX 0.68 +364: LSD 1.00 +364: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.005 s ] +364: CMIN -0.35 CAVG 0.05 CMAX 3.40 +364: LSD 5.00 +364: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.003 s ] +364: CMIN -1.48 CAVG 0.20 CMAX 14.26 +364: LSD 21.00 +364: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.006 s ] +364: CMIN -1.74 CAVG 0.44 CMAX 32.50 +364: LSD 27.95 +364: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.003 s ] +364: CMIN -1.73 CAVG 0.34 CMAX 23.99 +364: LSD 13.11 +364: [2] xf_out->m_type = 9, xf_in->m_type = 0 +364: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +364: bspline_xform_initialize +364: rdims = (2,2,2) +364: vox_per_rgn = (22,22,22) +364: cdims = (5 5 5) +364: ** Registration worker thread finished. +364: Writing transformation ... +364: Load: 0.0657718 +364: Run: 0.0555079 +364: Save: 0.00769114 +364: Total: 0.128971 +364: Finished! +364: +364: STDERR: +364: Not an error 378: RETVAL: 0 378: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 378: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha @@ -19090,27 +19343,27 @@ 378: Setting nmax, mmax = 1536 41 378: >>> START 378: This problem is unconstrained. -378: [ 0, 0] SCORE 3407.677 NV 6859 GM 84.848 GN 25 [ 0.021 s ] +378: [ 0, 0] SCORE 3407.677 NV 6859 GM 84.848 GN 25 [ 0.004 s ] 378: MSE 2961.435 LM 446.242 378: CMIN 0.00 CAVG 0.00 CMAX 0.00 378: LSD 0.00 -378: [ 0, 1] SCORE 3361.326 NV 6859 GM 83.763 GN 24.7 [ 0.008 s ] +378: [ 0, 1] SCORE 3361.326 NV 6859 GM 83.763 GN 24.7 [ 0.003 s ] 378: MSE 2923.708 LM 437.617 378: CMIN -0.50 CAVG -0.00 CMAX 0.07 378: LSD 1.00 -378: [ 0, 2] SCORE 3181.879 NV 6859 GM 79.422 GN 23.5 [ 0.016 s ] +378: [ 0, 2] SCORE 3181.879 NV 6859 GM 79.422 GN 23.5 [ 0.004 s ] 378: MSE 2777.757 LM 404.122 378: CMIN -2.48 CAVG -0.01 CMAX 0.34 378: LSD 5.00 -378: [ 0, 3] SCORE 2557.441 NV 6859 GM 62.038 GN 18.9 [ 0.016 s ] +378: [ 0, 3] SCORE 2557.441 NV 6859 GM 62.038 GN 18.9 [ 0.003 s ] 378: MSE 2271.265 LM 286.176 378: CMIN -10.41 CAVG -0.05 CMAX 1.44 378: LSD 21.00 -378: [ 1, 4] SCORE 1117.771 NV 6859 GM -1.799 GN 6.83 [ 0.016 s ] +378: [ 1, 4] SCORE 1117.771 NV 6859 GM -1.799 GN 6.83 [ 0.003 s ] 378: MSE 1009.222 LM 108.548 378: CMIN -45.97 CAVG -0.19 CMAX 12.05 378: LSD 76.81 -378: [ 2, 5] SCORE 848.407 NV 6859 GM -12.697 GN 4.53 [ 0.017 s ] +378: [ 2, 5] SCORE 848.407 NV 6859 GM -12.697 GN 4.53 [ 0.003 s ] 378: MSE 667.771 LM 180.635 378: CMIN -54.81 CAVG -0.22 CMAX 17.65 378: LSD 34.30 @@ -19144,21 +19397,49 @@ 378: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-warped.fcsv 378: Saving vf... 378: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-vf.mha -378: Load: 0.174903 -378: Run: 0.144262 -378: Save: 0.154322 -378: Total: 0.473487 +378: Load: 0.0576918 +378: Run: 0.0321069 +378: Save: 0.062531 +378: Total: 0.15233 378: Finished! 378: 378: STDERR: 378: Not an error -521/578 Test #378: plm-bsp-landmark-a .................... Passed 0.96 sec +519/578 Test #364: plm-bsp-itk-output .................... Passed 0.53 sec +test 470 + Start 470: plm-scale-vf-a-check + +470: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=4.000" "-DUPPER_THRESH=4.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +470: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +470: Test timeout computed to be: 1500 +520/578 Test #378: plm-bsp-landmark-a .................... Passed 0.46 sec +test 476 + Start 476: plm-thumbnail-a-check + +476: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=76.85" "-DUPPER_THRESH=76.95" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +476: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +476: Test timeout computed to be: 1500 +467: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a-stats.stdout.txt +467: -- REGEX is AVE *([-0-9.]*) +467: -- LOWER_THRESH is -3.735 +467: -- UPPER_THRESH is -3.730 +467: -- PARSED VALUE=|MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872| +467: -- PARSED_VALUE=|-3.732322| +467: Not an error +521/578 Test #467: plm-scale-a-check ..................... Passed 0.04 sec test 479 Start 479: plm-thumbnail-b-check 479: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 479: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 479: Test timeout computed to be: 1500 +464: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-stats.stdout.txt +464: -- REGEX is Mean: *([-0-9.]*) +464: -- LOWER_THRESH is 6.67 +464: -- UPPER_THRESH is 6.74 +464: -- PARSED VALUE=|Mean: 6.707 -0.405 -0.405| +464: -- PARSED_VALUE=|6.707| +464: Not an error 470: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a-stats.stdout.txt 470: -- REGEX is Mean: *([-0-9.]*) 470: -- LOWER_THRESH is 4.000 @@ -19166,7 +19447,7 @@ 470: -- PARSED VALUE=|Mean: 4.000 0.000 0.000| 470: -- PARSED_VALUE=|4.000| 470: Not an error -522/578 Test #470: plm-scale-vf-a-check .................. Passed 0.10 sec +522/578 Test #464: plm-resample-c-check .................. Passed 0.08 sec test 482 Start 482: plm-thumbnail-c-check @@ -19180,13 +19461,20 @@ 476: -- PARSED VALUE=|MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256| 476: -- PARSED_VALUE=|76.906250| 476: Not an error -523/578 Test #476: plm-thumbnail-a-check ................. Passed 0.13 sec +523/578 Test #470: plm-scale-vf-a-check .................. Passed 0.06 sec test 485 Start 485: plm-intersect-check 485: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=729" "-DUPPER_THRESH=729" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 485: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 485: Test timeout computed to be: 1500 +524/578 Test #476: plm-thumbnail-a-check ................. Passed 0.06 sec +test 488 + Start 488: plm-union-check + +488: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1271" "-DUPPER_THRESH=1271" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +488: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +488: Test timeout computed to be: 1500 479: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b-stats.stdout.txt 479: -- REGEX is AVE *([-0-9.]*) 479: -- LOWER_THRESH is 0.0 @@ -19194,6 +19482,13 @@ 479: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 256| 479: -- PARSED_VALUE=|0.000000| 479: Not an error +525/578 Test #479: plm-thumbnail-b-check ................. Passed 0.05 sec +test 491 + Start 491: plm-threshold-a-check + +491: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.306" "-DUPPER_THRESH=0.308" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +491: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +491: Test timeout computed to be: 1500 482: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c-stats.stdout.txt 482: -- REGEX is AVE *([-0-9.]*) 482: -- LOWER_THRESH is 8.1 @@ -19201,20 +19496,13 @@ 482: -- PARSED VALUE=|MIN 0.000000 AVE 8.203125 MAX 119.000000 NONZERO 32 NUMVOX 256| 482: -- PARSED_VALUE=|8.203125| 482: Not an error -524/578 Test #479: plm-thumbnail-b-check ................. Passed 0.09 sec -test 488 - Start 488: plm-union-check - -488: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1271" "-DUPPER_THRESH=1271" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -488: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -488: Test timeout computed to be: 1500 -525/578 Test #482: plm-thumbnail-c-check ................. Passed 0.08 sec -test 491 - Start 491: plm-threshold-a-check +526/578 Test #482: plm-thumbnail-c-check ................. Passed 0.04 sec +test 494 + Start 494: plm-threshold-b-check -491: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.306" "-DUPPER_THRESH=0.308" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -491: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -491: Test timeout computed to be: 1500 +494: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.670" "-DUPPER_THRESH=0.672" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +494: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +494: Test timeout computed to be: 1500 485: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect-stats.stdout.txt 485: -- REGEX is NONZERO *([-0-9.]*) 485: -- LOWER_THRESH is 729 @@ -19222,13 +19510,13 @@ 485: -- PARSED VALUE=|MIN 0.000000 AVE 0.013285 MAX 1.000000 NONZERO 729 NUMVOX 54872| 485: -- PARSED_VALUE=|729| 485: Not an error -526/578 Test #485: plm-intersect-check ................... Passed 0.11 sec -test 494 - Start 494: plm-threshold-b-check +527/578 Test #485: plm-intersect-check ................... Passed 0.04 sec +test 497 + Start 497: plm-threshold-c-check -494: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.670" "-DUPPER_THRESH=0.672" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -494: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -494: Test timeout computed to be: 1500 +497: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1206" "-DUPPER_THRESH=1206" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +497: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +497: Test timeout computed to be: 1500 488: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt 488: -- REGEX is NONZERO *([-0-9.]*) 488: -- LOWER_THRESH is 1271 @@ -19236,13 +19524,6 @@ 488: -- PARSED VALUE=|MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872| 488: -- PARSED_VALUE=|1271| 488: Not an error -527/578 Test #488: plm-union-check ....................... Passed 0.11 sec -test 497 - Start 497: plm-threshold-c-check - -497: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1206" "-DUPPER_THRESH=1206" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -497: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -497: Test timeout computed to be: 1500 491: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt 491: -- REGEX is AVE *([-0-9.]*) 491: -- LOWER_THRESH is 0.306 @@ -19250,13 +19531,20 @@ 491: -- PARSED VALUE=|MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872| 491: -- PARSED_VALUE=|0.306732| 491: Not an error -528/578 Test #491: plm-threshold-a-check ................. Passed 0.10 sec +528/578 Test #488: plm-union-check ....................... Passed 0.07 sec test 498 Start 498: plm-warp-pointset-a 498: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 498: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 498: Test timeout computed to be: 1500 +529/578 Test #491: plm-threshold-a-check ................. Passed 0.07 sec +test 499 + Start 499: plm-warp-pointset-b + +499: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +499: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +499: Test timeout computed to be: 1500 494: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt 494: -- REGEX is AVE *([-0-9.]*) 494: -- LOWER_THRESH is 0.670 @@ -19264,32 +19552,6 @@ 494: -- PARSED VALUE=|MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872| 494: -- PARSED_VALUE=|0.671290| 494: Not an error -529/578 Test #494: plm-threshold-b-check ................. Passed 0.11 sec -test 499 - Start 499: plm-warp-pointset-b - -499: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -499: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -499: Test timeout computed to be: 1500 -445: RETVAL: 0 -445: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha) -445: Setting PIH from VF -445: PIH is: -445: Origin = -25.0000 -25.0000 -25.0000 -445: Size = 38 38 38 -445: Spacing = 1.3158 1.3158 1.3158 -445: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -445: Rt_study_warp: Warping m_img -445: plm_warp_itk: xform_to_itk_vf -445: plm_warp_itk: convert_to_itk -445: plm_warp_itk: warping... -445: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha) -445: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha -445: Rt_study_warp: warp and save ss. -445: Finished! -445: -445: STDERR: -445: Not an error 497: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt 497: -- REGEX is NONZERO *([-0-9.]*) 497: -- LOWER_THRESH is 1206 @@ -19297,16 +19559,57 @@ 497: -- PARSED VALUE=|MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872| 497: -- PARSED_VALUE=|1206| 497: Not an error -498: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -498: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv -498: EXPECTED_ERRNO is -530/578 Test #445: plm-compose-a-warp .................... Passed 0.84 sec +530/578 Test #494: plm-threshold-b-check ................. Passed 0.12 sec test 500 Start 500: plm-warp-pointset-c 500: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 500: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 500: Test timeout computed to be: 1500 +531/578 Test #497: plm-threshold-c-check ................. Passed 0.14 sec +test 503 + Start 503: plm-warp-a-check + +503: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.77" "-DUPPER_THRESH=5.78" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +503: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +503: Test timeout computed to be: 1500 +498: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +498: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv +498: EXPECTED_ERRNO is +499: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +499: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt +499: EXPECTED_ERRNO is +500: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +500: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv +500: EXPECTED_ERRNO is +503: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt +503: -- REGEX is Mean: *([-0-9.]*) +503: -- LOWER_THRESH is 5.77 +503: -- UPPER_THRESH is 5.78 +503: -- PARSED VALUE=|Mean: 5.773 0.002 0.002| +503: -- PARSED_VALUE=|5.773| +503: Not an error +532/578 Test #503: plm-warp-a-check ...................... Passed 0.10 sec +test 506 + Start 506: plm-warp-b-check-1 + +506: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-1.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.77" "-DUPPER_THRESH=5.78" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +506: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +506: Test timeout computed to be: 1500 +506: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-1.stdout.txt +506: -- REGEX is Mean: *([-0-9.]*) +506: -- LOWER_THRESH is 5.77 +506: -- UPPER_THRESH is 5.78 +506: -- PARSED VALUE=|Mean: 5.773 0.002 0.002| +506: -- PARSED_VALUE=|5.773| +506: Not an error +533/578 Test #506: plm-warp-b-check-1 .................... Passed 0.05 sec +test 508 + Start 508: plm-warp-b-check-2 + +508: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-775.7" "-DUPPER_THRESH=-775.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +508: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +508: Test timeout computed to be: 1500 419: RETVAL: 0 419: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 419: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha @@ -19352,155 +19655,142 @@ 419: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b-img.mha 419: Saving vf... 419: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b-vf.mha -419: Load: 0.277391 -419: Run: 0.131946 -419: Save: 0.0394979 -419: Total: 0.448835 +419: Load: 0.118832 +419: Run: 0.140666 +419: Save: 0.0307178 +419: Total: 0.290216 419: Finished! 419: 419: STDERR: 419: Not an error -531/578 Test #419: plm-reg-roi-b ......................... Passed 1.08 sec -test 503 - Start 503: plm-warp-a-check - -503: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.77" "-DUPPER_THRESH=5.78" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -503: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -503: Test timeout computed to be: 1500 -532/578 Test #497: plm-threshold-c-check ................. Passed 0.14 sec -test 506 - Start 506: plm-warp-b-check-1 - -506: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-1.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.77" "-DUPPER_THRESH=5.78" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -506: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -506: Test timeout computed to be: 1500 -418: RETVAL: 0 -418: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha -418: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha -418: Loading fixed roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha -418: Loading moving roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha -418: Launching registration worker thread -418: Inside registration worker thread -418: Doing registration stage -418: [1] xf_in->m_type = 0, xf_out->m_type = 0 -418: RESAMPLE 1 1: (1 1 1), (1 1 1) -418: RESAMPLE 1 1: (1 1 1), (1 1 1) -418: volume_calc_grad complete. -418: bspline_xform_initialize -418: Warning: vox_per_rgn was less than 4. -418: Warning: vox_per_rgn was less than 4. -418: Warning: vox_per_rgn was less than 4. -418: rdims = (10,10,10) -418: vox_per_rgn = (4,4,4) -418: cdims = (13 13 13) -418: Algorithm flavor = h -418: Threading = 0 -418: >> Checking JH allocation -418: >> Performing JH allocation -418: BSPLINE PARMS -418: max_its = 5 -418: max_feval = 5 -418: BSPLINE XFORM HEADER -418: vox_per_rgn = 4 4 4 -418: roi_offset = 0 0 0 -418: roi_dim = 38 38 38 -418: img_dc = 1 0 0 0 1 0 0 0 1 -418: BST METRICS -418: MET 110111 MI 1.000000 -418: >> Performing JH initialization -418: Setting nmax, mmax = 6591 83 -418: >>> START -418: This problem is unconstrained. -418: [ 0, 0] MI -0.0060547 NV 729 GM 0.008 GN 0.0011 [ 0.097 s ] -418: CMIN 0.01 CAVG 0.01 CMAX 0.01 -418: LSD 0.00 -418: [ 0, 1] MI -0.0496013 NV 569 GM -0.020 GN 0.00349 [ 0.103 s ] -418: CMIN -0.30 CAVG 0.01 CMAX 0.04 -418: LSD 1.00 -418: [ 1, 2] MI -0.0061482 NV 729 GM 0.000 GN 0.00024 [ 0.090 s ] -418: CMIN -0.30 CAVG 0.01 CMAX 0.05 -418: LSD 0.25 -418: [ 1, 3] MI -0.0496042 NV 569 GM -0.020 GN 0.00349 [ 0.080 s ] -418: CMIN -0.30 CAVG 0.01 CMAX 0.04 -418: LSD 0.00 -418: [ 1, 4] MI -0.0496071 NV 569 GM -0.020 GN 0.00349 [ 0.076 s ] -418: CMIN -0.30 CAVG 0.01 CMAX 0.04 -418: LSD 0.00 -418: [ 1, 5] MI -0.0020808 NV 629 GM -0.002 GN 0.000318 [ 0.064 s ] -418: CMIN -0.30 CAVG 0.01 CMAX 0.05 -418: LSD 0.12 -418: [2] xf_out->m_type = 9, xf_in->m_type = 0 -418: ** Registration worker thread finished. -418: Writing transformation ... -418: Warping... -418: Running: plm_warp_native -418: Converting input image... -418: Converting xform... -418: bspline_xform_initialize -418: rdims = (10,10,10) -418: vox_per_rgn = (4,4,4) -418: cdims = (13 13 13) -418: Creating output vf... -418: Creating output volume... -418: Running native warper... -418: bspline_warp complete. -418: Back convert to original type... -418: > Convert vf to itk -418: > Conversion complete. -418: plm_warp_native is complete. -418: Saving image... -418: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a-img.mha -418: Saving vf... -418: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a-vf.mha -418: Load: 0.0845881 -418: Run: 0.535554 -418: Save: 0.116325 -418: Total: 0.736467 -418: Finished! -418: -418: STDERR: -418: Not an error -533/578 Test #418: plm-reg-roi-a ......................... Passed 1.12 sec -test 508 - Start 508: plm-warp-b-check-2 - -508: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-775.7" "-DUPPER_THRESH=-775.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -508: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -508: Test timeout computed to be: 1500 -499: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -499: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt -499: EXPECTED_ERRNO is -500: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -500: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv -500: EXPECTED_ERRNO is -506: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-1.stdout.txt -506: -- REGEX is Mean: *([-0-9.]*) -506: -- LOWER_THRESH is 5.77 -506: -- UPPER_THRESH is 5.78 -506: -- PARSED VALUE=|Mean: 5.773 0.002 0.002| -506: -- PARSED_VALUE=|5.773| -506: Not an error -534/578 Test #506: plm-warp-b-check-1 .................... Passed 0.08 sec +449: RETVAL: 0 +449: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha) +449: Setting PIH from VF +449: PIH is: +449: Origin = -25.0000 -25.0000 -25.0000 +449: Size = 38 38 38 +449: Spacing = 1.3158 1.3158 1.3158 +449: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +449: Rt_study_warp: Warping m_img +449: plm_warp_itk: xform_to_itk_vf +449: plm_warp_itk: convert_to_itk +449: plm_warp_itk: warping... +449: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha) +449: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha +449: Rt_study_warp: warp and save ss. +449: Finished! +449: +449: STDERR: +449: Not an error +534/578 Test #419: plm-reg-roi-b ......................... Passed 0.75 sec test 511 Start 511: plm-warp-c-check 511: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=9.2" "-DUPPER_THRESH=9.3" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 511: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 511: Test timeout computed to be: 1500 -503: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt -503: -- REGEX is Mean: *([-0-9.]*) -503: -- LOWER_THRESH is 5.77 -503: -- UPPER_THRESH is 5.78 -503: -- PARSED VALUE=|Mean: 5.773 0.002 0.002| -503: -- PARSED_VALUE=|5.773| -503: Not an error -535/578 Test #503: plm-warp-a-check ...................... Passed 0.12 sec +420: RETVAL: 0 +420: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha +420: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha +420: Loading fixed roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha +420: Launching registration worker thread +420: Inside registration worker thread +420: Doing registration stage +420: [1] xf_in->m_type = 0, xf_out->m_type = 0 +420: RESAMPLE 1 1: (2 2 2), (2 2 2) +420: RESAMPLE 1 1: (2 2 2), (2 2 2) +420: volume_calc_grad complete. +420: bspline_xform_initialize +420: rdims = (3,5,3) +420: vox_per_rgn = (5,5,5) +420: cdims = (6 8 6) +420: Algorithm flavor = g +420: Threading = 0 +420: Regularization: flavor = c lambda = 0.100000 +420: Regularizer initialized +420: >> Checking JH allocation +420: BSPLINE PARMS +420: max_its = 10 +420: max_feval = 10 +420: BSPLINE XFORM HEADER +420: vox_per_rgn = 5 5 5 +420: roi_offset = 0 0 0 +420: roi_dim = 15 25 15 +420: img_dc = 1 0 0 0 1 0 0 0 1 +420: BST METRICS +420: MET 110110 MSE 1.000000 +420: Setting nmax, mmax = 864 31 +420: >>> START +420: This problem is unconstrained. +420: [ 0, 0] SCORE 0.0000000 NV 1690 GM 0.000 GN 0 [ 0.091 s ] +420: MSE 0.0000000 RM 0.000 [ 0.059 | 0.032 ] +420: CMIN 0.00 CAVG 0.00 CMAX 0.00 +420: LSD 0.00 +420: * * * +420: +420: Tit = total number of iterations +420: Tnf = total number of function evaluations +420: Tnint = total number of segments explored during Cauchy searches +420: Skip = number of BFGS updates skipped +420: Nact = number of active bounds at final generalized Cauchy point +420: Projg = norm of the final projected gradient +420: F = final function value +420: +420: * * * +420: N Tit Tnf Tnint Skip Nact Projg F +420: 864 0 1 0 0 0 0 0 +420: CONVERGENCE: NORM_OF_PROJECTED_GRADIENT_<=_PGTOL +420: Total User time 0 seconds. +420: [2] xf_out->m_type = 9, xf_in->m_type = 0 +420: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +420: bspline_xform_initialize +420: rdims = (3,5,3) +420: vox_per_rgn = (10,10,10) +420: cdims = (6 8 6) +420: ** Registration worker thread finished. +420: Writing transformation ... +420: Warping... +420: Running: plm_warp_native +420: Converting input image... +420: Converting xform... +420: bspline_xform_initialize +420: rdims = (3,5,3) +420: vox_per_rgn = (10,10,10) +420: cdims = (6 8 6) +420: Creating output vf... +420: Creating output volume... +420: Running native warper... +420: bspline_warp complete. +420: Back convert to original type... +420: > Convert vf to itk +420: > Conversion complete. +420: plm_warp_native is complete. +420: Saving image... +420: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c-img.mha +420: Saving vf... +420: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c-vf.mha +420: Load: 0.120999 +420: Run: 0.132323 +420: Save: 0.106544 +420: Total: 0.359866 +420: Finished! +420: +420: STDERR: +420: Not an error +535/578 Test #420: plm-reg-roi-c ......................... Passed 0.76 sec test 514 Start 514: plm-warp-d-check 514: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=9.2" "-DUPPER_THRESH=9.3" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 514: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 514: Test timeout computed to be: 1500 +536/578 Test #449: plm-compose-b-warp .................... Passed 0.67 sec +test 517 + Start 517: plm-warp-f-check-1 + +517: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-stats-1.stdout.txt" "-DREGEX=Direction = *[-0-9.]* *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=-0.379" "-DUPPER_THRESH=-0.378" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +517: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +517: Test timeout computed to be: 1500 508: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-2.stdout.txt 508: -- REGEX is AVE *([-0-9.]*) 508: -- LOWER_THRESH is -775.7 @@ -19508,133 +19798,13 @@ 508: -- PARSED VALUE=|MIN -999.876892 AVE -775.668274 MAX 0.000000 NONZERO 49099 NUMVOX 54872| 508: -- PARSED_VALUE=|-775.668274| 508: Not an error -536/578 Test #508: plm-warp-b-check-2 .................... Passed 0.11 sec -test 517 - Start 517: plm-warp-f-check-1 +537/578 Test #508: plm-warp-b-check-2 .................... Passed 0.13 sec +test 520 + Start 520: plm-warp-g-check-1 -517: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-stats-1.stdout.txt" "-DREGEX=Direction = *[-0-9.]* *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=-0.379" "-DUPPER_THRESH=-0.378" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -517: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -517: Test timeout computed to be: 1500 -514: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-stats.stdout.txt -514: -- REGEX is AVE *([-0-9.]*) -514: -- LOWER_THRESH is 9.2 -514: -- UPPER_THRESH is 9.3 -514: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872| -514: -- PARSED_VALUE=|9.220003| -514: Not an error -421: RETVAL: 0 -421: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha -421: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha -421: Loading fixed roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha -421: Launching registration worker thread -421: Inside registration worker thread -421: Doing registration stage -421: [1] xf_in->m_type = 0, xf_out->m_type = 0 -421: RESAMPLE 1 1: (2 2 2), (2 2 2) -421: RESAMPLE 1 1: (2 2 2), (2 2 2) -421: volume_calc_grad complete. -421: bspline_xform_initialize -421: rdims = (3,5,3) -421: vox_per_rgn = (5,5,5) -421: cdims = (6 8 6) -421: Algorithm flavor = g -421: Threading = 0 -421: Regularization: flavor = c lambda = 0.100000 -421: Regularizer initialized -421: >> Checking JH allocation -421: BSPLINE PARMS -421: max_its = 10 -421: max_feval = 10 -421: BSPLINE XFORM HEADER -421: vox_per_rgn = 5 5 5 -421: roi_offset = 0 0 0 -421: roi_dim = 15 25 15 -421: img_dc = 1 0 0 0 1 0 0 0 1 -421: BST METRICS -421: MET 110110 MSE 1.000000 -421: Setting nmax, mmax = 864 31 -421: >>> START -421: This problem is unconstrained. -421: [ 0, 0] SCORE 66568.047 NV 1690 GM 14792.900 GN 3.94e+03 [ 0.067 s ] -421: MSE 66568.047 RM 0.000 [ 0.035 | 0.032 ] -421: CMIN 0.00 CAVG 0.00 CMAX 0.00 -421: LSD 0.00 -421: [ 0, 1] SCORE 60779.625 NV 1690 GM 13427.228 GN 3.59e+03 [ 0.080 s ] -421: MSE 60779.609 RM 0.015 [ 0.040 | 0.040 ] -421: CMIN -0.46 CAVG -0.00 CMAX 0.10 -421: LSD 1.00 -421: [ 0, 2] SCORE 43202.340 NV 1690 GM 16992.866 GN 4.39e+03 [ 0.068 s ] -421: MSE 43201.965 RM 0.376 [ 0.044 | 0.024 ] -421: CMIN -2.30 CAVG -0.02 CMAX 0.50 -421: LSD 5.00 -421: [ 0, 3] SCORE 11325.080 NV 1619 GM -932.100 GN 1.45e+03 [ 0.072 s ] -421: MSE 11318.452 RM 6.628 [ 0.044 | 0.028 ] -421: CMIN -9.66 CAVG -0.09 CMAX 2.11 -421: LSD 21.00 -421: [ 1, 4] SCORE 5165.491 NV 1647 GM 1195.560 GN 605 [ 0.072 s ] -421: MSE 5160.030 RM 5.461 [ 0.032 | 0.040 ] -421: CMIN -7.99 CAVG -0.09 CMAX 1.46 -421: LSD 4.95 -421: [ 2, 5] SCORE 5370.420 NV 1649 GM -3582.381 GN 910 [ 0.047 s ] -421: MSE 5363.509 RM 6.911 [ 0.032 | 0.016 ] -421: CMIN -8.90 CAVG -0.10 CMAX 1.42 -421: LSD 5.04 -421: [ 2, 6] SCORE 4305.869 NV 1649 GM -1305.969 GN 395 [ 0.054 s ] -421: MSE 4299.880 RM 5.989 [ 0.028 | 0.026 ] -421: CMIN -7.75 CAVG -0.10 CMAX 1.44 -421: LSD 2.37 -421: [ 3, 7] SCORE 4280.987 NV 1653 GM 1734.354 GN 474 [ 0.064 s ] -421: MSE 4275.453 RM 5.534 [ 0.031 | 0.033 ] -421: CMIN -7.64 CAVG -0.09 CMAX 1.40 -421: LSD 1.62 -421: [ 4, 8] SCORE 4194.305 NV 1651 GM 205.505 GN 129 [ 0.062 s ] -421: MSE 4188.512 RM 5.794 [ 0.026 | 0.035 ] -421: CMIN -7.74 CAVG -0.10 CMAX 1.43 -421: LSD 0.60 -421: [ 5, 9] SCORE 4196.242 NV 1645 GM 115.154 GN 112 [ 0.058 s ] -421: MSE 4190.442 RM 5.800 [ 0.020 | 0.038 ] -421: CMIN -7.66 CAVG -0.10 CMAX 1.43 -421: LSD 0.26 -421: [ 5, 10] SCORE 4195.648 NV 1649 GM 201.989 GN 124 [ 0.059 s ] -421: MSE 4189.854 RM 5.795 [ 0.017 | 0.041 ] -421: CMIN -7.72 CAVG -0.10 CMAX 1.43 -421: LSD 0.06 -421: [2] xf_out->m_type = 9, xf_in->m_type = 0 -421: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -421: bspline_xform_initialize -421: rdims = (3,5,3) -421: vox_per_rgn = (10,10,10) -421: cdims = (6 8 6) -421: ** Registration worker thread finished. -421: Writing transformation ... -421: Warping... -421: Running: plm_warp_native -421: Converting input image... -421: Converting xform... -421: bspline_xform_initialize -421: rdims = (3,5,3) -421: vox_per_rgn = (10,10,10) -421: cdims = (6 8 6) -421: Creating output vf... -421: Creating output volume... -421: Running native warper... -421: bspline_warp complete. -421: Back convert to original type... -421: > Convert vf to itk -421: > Conversion complete. -421: plm_warp_native is complete. -421: Saving image... -421: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d-img.mha -421: Saving vf... -421: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d-vf.mha -421: Load: 0.0739372 -421: Run: 0.743018 -421: Save: 0.096545 -421: Total: 0.9135 -421: Finished! -421: -421: STDERR: -421: Not an error +520: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-764.0" "-DUPPER_THRESH=-763.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +520: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +520: Test timeout computed to be: 1500 511: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-stats.stdout.txt 511: -- REGEX is AVE *([-0-9.]*) 511: -- LOWER_THRESH is 9.2 @@ -19642,13 +19812,20 @@ 511: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872| 511: -- PARSED_VALUE=|9.220003| 511: Not an error -537/578 Test #514: plm-warp-d-check ...................... Passed 0.06 sec -test 520 - Start 520: plm-warp-g-check-1 +538/578 Test #511: plm-warp-c-check ...................... Passed 0.10 sec +test 523 + Start 523: plm-warp-h-check-1 -520: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-764.0" "-DUPPER_THRESH=-763.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -520: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -520: Test timeout computed to be: 1500 +523: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=113.5" "-DUPPER_THRESH=114.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +523: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +523: Test timeout computed to be: 1500 +514: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-stats.stdout.txt +514: -- REGEX is AVE *([-0-9.]*) +514: -- LOWER_THRESH is 9.2 +514: -- UPPER_THRESH is 9.3 +514: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872| +514: -- PARSED_VALUE=|9.220003| +514: Not an error 517: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-stats-1.stdout.txt 517: -- REGEX is Direction = *[-0-9.]* *[-0-9.]* *([-0-9.]*) 517: -- LOWER_THRESH is -0.379 @@ -19656,27 +19833,39 @@ 517: -- PARSED VALUE=|Direction = 0.9254 0.0180 -0.3785 0.1632 0.8826 0.4410 0.3420 -0.4698 0.8138| 517: -- PARSED_VALUE=|-0.3785| 517: Not an error -538/578 Test #421: plm-reg-roi-d ......................... Passed 1.24 sec -test 523 - Start 523: plm-warp-h-check-1 - -523: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=113.5" "-DUPPER_THRESH=114.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -523: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -523: Test timeout computed to be: 1500 -539/578 Test #511: plm-warp-c-check ...................... Passed 0.12 sec +523: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-stats-1.stdout.txt +523: -- REGEX is AVE *([-0-9.]*) +523: -- LOWER_THRESH is 113.5 +523: -- UPPER_THRESH is 114.0 +523: -- PARSED VALUE=|MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872| +523: -- PARSED_VALUE=|113.750511| +523: Not an error +539/578 Test #517: plm-warp-f-check-1 .................... Passed 0.14 sec test 526 Start 526: plm-warp-i-check-1 526: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=114.4" "-DUPPER_THRESH=114.7" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 526: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 526: Test timeout computed to be: 1500 -540/578 Test #517: plm-warp-f-check-1 .................... Passed 0.08 sec -test 529 - Start 529: plm-xf-convert-c - -529: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -529: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -529: Test timeout computed to be: 1500 +445: RETVAL: 0 +445: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha) +445: Setting PIH from VF +445: PIH is: +445: Origin = -25.0000 -25.0000 -25.0000 +445: Size = 38 38 38 +445: Spacing = 1.3158 1.3158 1.3158 +445: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +445: Rt_study_warp: Warping m_img +445: plm_warp_itk: xform_to_itk_vf +445: plm_warp_itk: convert_to_itk +445: plm_warp_itk: warping... +445: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha) +445: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha +445: Rt_study_warp: warp and save ss. +445: Finished! +445: +445: STDERR: +445: Not an error 453: RETVAL: 0 453: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha) 453: Setting PIH from VF @@ -19696,84 +19885,158 @@ 453: 453: STDERR: 453: Not an error -541/578 Test #453: plm-compose-c-warp .................... Passed 1.01 sec +520: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt +520: -- REGEX is AVE *([-0-9.]*) +520: -- LOWER_THRESH is -764.0 +520: -- UPPER_THRESH is -763.6 +520: -- PARSED VALUE=|MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872| +520: -- PARSED_VALUE=|-763.820862| +520: Not an error +540/578 Test #445: plm-compose-a-warp .................... Passed 0.86 sec +test 529 + Start 529: plm-xf-convert-c + +529: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +529: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +529: Test timeout computed to be: 1500 +541/578 Test #453: plm-compose-c-warp .................... Passed 0.83 sec test 533 Start 533: plm-xf-convert-d-warp-1-check 533: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-745.8" "-DUPPER_THRESH=-744.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 533: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 533: Test timeout computed to be: 1500 -523: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-stats-1.stdout.txt -523: -- REGEX is AVE *([-0-9.]*) -523: -- LOWER_THRESH is 113.5 -523: -- UPPER_THRESH is 114.0 -523: -- PARSED VALUE=|MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872| -523: -- PARSED_VALUE=|113.750511| -523: Not an error -542/578 Test #523: plm-warp-h-check-1 .................... Passed 0.08 sec +542/578 Test #514: plm-warp-d-check ...................... Passed 0.23 sec test 536 Start 536: plm-xf-convert-d-warp-2-check 536: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-751.0" "-DUPPER_THRESH=-744.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 536: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 536: Test timeout computed to be: 1500 -526: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-stats-1.stdout.txt -526: -- REGEX is AVE *([-0-9.]*) -526: -- LOWER_THRESH is 114.4 -526: -- UPPER_THRESH is 114.7 -526: -- PARSED VALUE=|MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872| -526: -- PARSED_VALUE=|114.545189| -520: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt -520: -- REGEX is AVE *([-0-9.]*) -520: -- LOWER_THRESH is -764.0 -520: -- UPPER_THRESH is -763.6 -520: -- PARSED VALUE=|MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872| -520: -- PARSED_VALUE=|-763.820862| -520: Not an error -529: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -529: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125 -529: EXPECTED_ERRNO is -543/578 Test #520: plm-warp-g-check-1 .................... Passed 0.12 sec +543/578 Test #520: plm-warp-g-check-1 .................... Passed 0.20 sec test 537 Start 537: plm-xf-convert-e 537: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e;--fixed-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--moving-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 537: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 537: Test timeout computed to be: 1500 -526: Not an error -449: RETVAL: 0 -449: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha) -449: Setting PIH from VF -449: PIH is: -449: Origin = -25.0000 -25.0000 -25.0000 -449: Size = 38 38 38 -449: Spacing = 1.3158 1.3158 1.3158 -449: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -449: Rt_study_warp: Warping m_img -449: plm_warp_itk: xform_to_itk_vf -449: plm_warp_itk: convert_to_itk -449: plm_warp_itk: warping... -449: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha) -449: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha -449: Rt_study_warp: warp and save ss. -449: Finished! -449: -449: STDERR: -544/578 Test #526: plm-warp-i-check-1 .................... Passed 0.10 sec +544/578 Test #523: plm-warp-h-check-1 .................... Passed 0.19 sec test 538 Start 538: plm-xf-convert-f 538: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 538: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 538: Test timeout computed to be: 1500 -449: Not an error -545/578 Test #449: plm-compose-b-warp .................... Passed 1.16 sec +418: RETVAL: 0 +418: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha +418: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha +418: Loading fixed roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha +418: Loading moving roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha +418: Launching registration worker thread +418: Inside registration worker thread +418: Doing registration stage +418: [1] xf_in->m_type = 0, xf_out->m_type = 0 +418: RESAMPLE 1 1: (1 1 1), (1 1 1) +418: RESAMPLE 1 1: (1 1 1), (1 1 1) +418: volume_calc_grad complete. +418: bspline_xform_initialize +418: Warning: vox_per_rgn was less than 4. +418: Warning: vox_per_rgn was less than 4. +418: Warning: vox_per_rgn was less than 4. +418: rdims = (10,10,10) +418: vox_per_rgn = (4,4,4) +418: cdims = (13 13 13) +418: Algorithm flavor = h +418: Threading = 0 +418: >> Checking JH allocation +418: >> Performing JH allocation +418: BSPLINE PARMS +418: max_its = 5 +418: max_feval = 5 +418: BSPLINE XFORM HEADER +418: vox_per_rgn = 4 4 4 +418: roi_offset = 0 0 0 +418: roi_dim = 38 38 38 +418: img_dc = 1 0 0 0 1 0 0 0 1 +418: BST METRICS +418: MET 110111 MI 1.000000 +418: >> Performing JH initialization +418: Setting nmax, mmax = 6591 83 +418: >>> START +418: This problem is unconstrained. +418: [ 0, 0] MI -0.0060547 NV 729 GM 0.008 GN 0.0011 [ 0.117 s ] +418: CMIN 0.01 CAVG 0.01 CMAX 0.01 +418: LSD 0.00 +418: [ 0, 1] MI -0.0496013 NV 569 GM -0.020 GN 0.00349 [ 0.047 s ] +418: CMIN -0.30 CAVG 0.01 CMAX 0.04 +418: LSD 1.00 +418: [ 1, 2] MI -0.0061482 NV 729 GM 0.000 GN 0.00024 [ 0.066 s ] +418: CMIN -0.30 CAVG 0.01 CMAX 0.05 +418: LSD 0.25 +418: [ 1, 3] MI -0.0496042 NV 569 GM -0.020 GN 0.00349 [ 0.084 s ] +418: CMIN -0.30 CAVG 0.01 CMAX 0.04 +418: LSD 0.00 +418: [ 1, 4] MI -0.0496071 NV 569 GM -0.020 GN 0.00349 [ 0.096 s ] +418: CMIN -0.30 CAVG 0.01 CMAX 0.04 +418: LSD 0.00 +418: [ 1, 5] MI -0.0020808 NV 629 GM -0.002 GN 0.000318 [ 0.096 s ] +418: CMIN -0.30 CAVG 0.01 CMAX 0.05 +418: LSD 0.12 +418: [2] xf_out->m_type = 9, xf_in->m_type = 0 +418: ** Registration worker thread finished. +418: Writing transformation ... +418: Warping... +418: Running: plm_warp_native +418: Converting input image... +418: Converting xform... +418: bspline_xform_initialize +418: rdims = (10,10,10) +418: vox_per_rgn = (4,4,4) +418: cdims = (13 13 13) +418: Creating output vf... +418: Creating output volume... +418: Running native warper... +418: bspline_warp complete. +418: Back convert to original type... +418: > Convert vf to itk +418: > Conversion complete. +418: plm_warp_native is complete. +418: Saving image... +418: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a-img.mha +418: Saving vf... +418: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a-vf.mha +418: Load: 0.068783 +418: Run: 0.521104 +418: Save: 0.115615 +418: Total: 0.705502 +418: Finished! +418: +418: STDERR: +418: Not an error +545/578 Test #418: plm-reg-roi-a ......................... Passed 1.07 sec test 539 Start 539: plm-xf-convert-g 539: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-g" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g;--fixed-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--moving-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 539: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 539: Test timeout computed to be: 1500 +526: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-stats-1.stdout.txt +526: -- REGEX is AVE *([-0-9.]*) +526: -- LOWER_THRESH is 114.4 +526: -- UPPER_THRESH is 114.7 +526: -- PARSED VALUE=|MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872| +526: -- PARSED_VALUE=|114.545189| +526: Not an error +529: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +529: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125 +529: EXPECTED_ERRNO is +546/578 Test #526: plm-warp-i-check-1 .................... Passed 0.13 sec +test 542 + Start 542: plm-xf-convert-h-check + +542: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt" "-DREGEX=Min: *([-0-9.]*)" "-DLOWER_THRESH=20" "-DUPPER_THRESH=20" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +542: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +542: Test timeout computed to be: 1500 533: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1-stats.stdout.txt 533: -- REGEX is AVE *([-0-9.]*) 533: -- LOWER_THRESH is -745.8 @@ -19781,13 +20044,13 @@ 533: -- PARSED VALUE=|MIN -999.979248 AVE -745.231567 MAX 0.000000 NONZERO 5851 NUMVOX 6859| 533: -- PARSED_VALUE=|-745.231567| 533: Not an error -546/578 Test #533: plm-xf-convert-d-warp-1-check ......... Passed 0.11 sec -test 542 - Start 542: plm-xf-convert-h-check +547/578 Test #533: plm-xf-convert-d-warp-1-check ......... Passed 0.12 sec +test 545 + Start 545: plm-xf-convert-i-check -542: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt" "-DREGEX=Min: *([-0-9.]*)" "-DLOWER_THRESH=20" "-DUPPER_THRESH=20" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -542: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -542: Test timeout computed to be: 1500 +545: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-stats.stdout.txt" "-DREGEX=Min: *([-0-9.]*)" "-DLOWER_THRESH=7.155" "-DUPPER_THRESH=7.165" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +545: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +545: Test timeout computed to be: 1500 536: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2-stats.stdout.txt 536: -- REGEX is AVE *([-0-9.]*) 536: -- LOWER_THRESH is -751.0 @@ -19795,29 +20058,22 @@ 536: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 536: -- PARSED_VALUE=|-745.347717| 536: Not an error -547/578 Test #536: plm-xf-convert-d-warp-2-check ......... Passed 0.09 sec -test 545 - Start 545: plm-xf-convert-i-check - -545: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-stats.stdout.txt" "-DREGEX=Min: *([-0-9.]*)" "-DLOWER_THRESH=7.155" "-DUPPER_THRESH=7.165" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -545: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -545: Test timeout computed to be: 1500 537: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 537: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e;--fixed-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--moving-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom 537: EXPECTED_ERRNO is -538: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -538: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -538: EXPECTED_ERRNO is +548/578 Test #536: plm-xf-convert-d-warp-2-check ......... Passed 0.13 sec +test 548 + Start 548: xf-invert-vf-zero-1-check + +548: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +548: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +548: Test timeout computed to be: 1500 539: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 539: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g;--fixed-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--moving-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom 539: EXPECTED_ERRNO is -545: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-stats.stdout.txt -545: -- REGEX is Min: *([-0-9.]*) -545: -- LOWER_THRESH is 7.155 -545: -- UPPER_THRESH is 7.165 -545: -- PARSED VALUE=|Min: 7.161 -0.245 -0.245| -545: -- PARSED_VALUE=|7.161| -545: Not an error +538: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +538: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +538: EXPECTED_ERRNO is 542: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt 542: -- REGEX is Min: *([-0-9.]*) 542: -- LOWER_THRESH is 20 @@ -19825,30 +20081,28 @@ 542: -- PARSED VALUE=|Min: 20.000 0.000 0.000| 542: -- PARSED_VALUE=|20.000| 542: Not an error -548/578 Test #545: plm-xf-convert-i-check ................ Passed 0.10 sec -test 548 - Start 548: xf-invert-vf-zero-1-check - -548: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -548: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -548: Test timeout computed to be: 1500 -549/578 Test #542: plm-xf-convert-h-check ................ Passed 0.14 sec +549/578 Test #542: plm-xf-convert-h-check ................ Passed 0.12 sec test 551 Start 551: xf-invert-vf-trans-1-check 551: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-10.0" "-DUPPER_THRESH=-9.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 551: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 551: Test timeout computed to be: 1500 -498: RETVAL: 0 -498: STDOUT: bspline_xform_initialize -498: rdims = (5,5,5) -498: vox_per_rgn = (8,8,8) -498: cdims = (8 8 8) -498: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv -498: -498: STDERR: -498: Not an error -550/578 Test #498: plm-warp-pointset-a ................... Passed 0.63 sec +545: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-stats.stdout.txt +545: -- REGEX is Min: *([-0-9.]*) +545: -- LOWER_THRESH is 7.155 +545: -- UPPER_THRESH is 7.165 +545: -- PARSED VALUE=|Min: 7.161 -0.245 -0.245| +545: -- PARSED_VALUE=|7.161| +545: Not an error +551: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt +551: -- REGEX is Mean: *([-0-9.]*) +551: -- LOWER_THRESH is -10.0 +551: -- UPPER_THRESH is -9.9 +551: -- PARSED VALUE=|Mean: -9.999 0.000 0.000| +551: -- PARSED_VALUE=|-9.999| +551: Not an error +550/578 Test #551: xf-invert-vf-trans-1-check ............ Passed 0.05 sec test 553 Start 553: xf-invert-vrs-a-check @@ -19862,63 +20116,36 @@ 548: -- PARSED VALUE=|Mean abs: 0.000 0.000 0.000| 548: -- PARSED_VALUE=|0.000| 548: Not an error -551/578 Test #548: xf-invert-vf-zero-1-check ............. Passed 0.10 sec +551/578 Test #545: plm-xf-convert-i-check ................ Passed 0.16 sec test 555 Start 555: xf-invert-vrs-b-check 555: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm" "-DREGEX=^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$" "-DLOWER_THRESH=-0.52361" "-DUPPER_THRESH=-0.52359" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 555: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 555: Test timeout computed to be: 1500 -553: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm -553: -- REGEX is ^Parameters: *(.*)$ -553: -- MATCH_STRING is 0 0 0 -20 0 0 -553: -- PARSED VALUE=|Parameters: 0 0 0 -20 0 0| -553: -- PARSED_VALUE=|0 0 0 -20 0 0| -553: -- LENGTH=13 -553: -- |0 0 0 -20 0 0|0 0 0 -20 0 0| -553: Not an error -551: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt -551: -- REGEX is Mean: *([-0-9.]*) -551: -- LOWER_THRESH is -10.0 -551: -- UPPER_THRESH is -9.9 -551: -- PARSED VALUE=|Mean: -9.999 0.000 0.000| -551: -- PARSED_VALUE=|-9.999| -551: Not an error -552/578 Test #551: xf-invert-vf-trans-1-check ............ Passed 0.10 sec +552/578 Test #548: xf-invert-vf-zero-1-check ............. Passed 0.16 sec test 558 Start 558: proton-dose-1-check 558: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.140" "-DUPPER_THRESH=0.145" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 558: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 558: Test timeout computed to be: 1500 -553/578 Test #553: xf-invert-vrs-a-check ................. Passed 0.08 sec +498: RETVAL: 0 +498: STDOUT: bspline_xform_initialize +498: rdims = (5,5,5) +498: vox_per_rgn = (8,8,8) +498: cdims = (8 8 8) +498: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv +498: +498: STDERR: +498: Not an error +553/578 Test #498: plm-warp-pointset-a ................... Passed 0.87 sec test 561 Start 561: proton-dose-4a-check 561: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 561: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 561: Test timeout computed to be: 1500 -555: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm -555: -- REGEX is ^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$ -555: -- LOWER_THRESH is -0.52361 -555: -- UPPER_THRESH is -0.52359 -555: -- PARSED VALUE=|Parameters: -0.5236 0 0 0 0 0| -555: -- PARSED_VALUE=|-0.5236| -555: Not an error -554/578 Test #555: xf-invert-vrs-b-check ................. Passed 0.10 sec -test 567 - Start 567: proton-dose-5a-check - -567: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -567: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -567: Test timeout computed to be: 1500 -558: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt -558: -- REGEX is AVE *([-0-9.]*) -558: -- LOWER_THRESH is 0.140 -558: -- UPPER_THRESH is 0.145 -558: -- PARSED VALUE=|MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000| -558: -- PARSED_VALUE=|0.143515| -558: Not an error 442: RETVAL: 0 442: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha 442: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha @@ -19957,22 +20184,22 @@ 442: Setting nmax, mmax = 6591 83 442: >>> START 442: This problem is unconstrained. -442: [ 0, 0] SCORE 5752.552 NV 54872 GM 5.543 GN 45.1 [ 0.062 s ] +442: [ 0, 0] SCORE 5752.552 NV 54872 GM 5.543 GN 45.1 [ 0.101 s ] 442: MSE 5540.166 PDM 7.0795197 CMIN 0.00 CAVG 0.00 CMAX 0.00 442: LSD 0.00 -442: [ 0, 1] SCORE 5663.708 NV 54872 GM 0.170 GN 43.8 [ 0.035 s ] +442: [ 0, 1] SCORE 5663.708 NV 54872 GM 0.170 GN 43.8 [ 0.039 s ] 442: MSE 5452.803 PDM 7.0301509 CMIN -0.20 CAVG -0.00 CMAX 0.16 442: LSD 1.00 -442: [ 0, 2] SCORE 5319.446 NV 54872 GM -0.447 GN 42 [ 0.033 s ] +442: [ 0, 2] SCORE 5319.446 NV 54872 GM -0.447 GN 42 [ 0.040 s ] 442: MSE 5114.376 PDM 6.8356566 CMIN -1.00 CAVG -0.00 CMAX 0.78 442: LSD 5.00 -442: [ 0, 3] SCORE 4111.230 NV 54872 GM -2.786 GN 35.2 [ 0.034 s ] +442: [ 0, 3] SCORE 4111.230 NV 54872 GM -2.786 GN 35.2 [ 0.022 s ] 442: MSE 3928.063 PDM 6.1055741 CMIN -4.21 CAVG -0.00 CMAX 3.26 442: LSD 21.00 -442: [ 1, 4] SCORE 1404.270 NV 54872 GM 1.576 GN 10.3 [ 0.017 s ] +442: [ 1, 4] SCORE 1404.270 NV 54872 GM 1.576 GN 10.3 [ 0.021 s ] 442: MSE 1228.705 PDM 5.8521819 CMIN -19.53 CAVG 0.01 CMAX 16.23 442: LSD 76.08 -442: [ 2, 5] SCORE 1282.464 NV 54872 GM 13.580 GN 4.68 [ 0.017 s ] +442: [ 2, 5] SCORE 1282.464 NV 54872 GM 13.580 GN 4.68 [ 0.045 s ] 442: MSE 1058.280 PDM 7.4727950 CMIN -25.04 CAVG 0.01 CMAX 19.49 442: LSD 32.00 442: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -19997,28 +20224,80 @@ 442: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a-img.nrrd 442: Saving vf... 442: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a-vf.nrrd -442: Load: 0.250333 -442: Run: 0.250762 -442: Save: 0.197144 -442: Total: 0.698239 +442: Load: 0.265146 +442: Run: 0.307149 +442: Save: 0.236338 +442: Total: 0.808633 442: Finished! 442: 442: STDERR: -555/578 Test #558: proton-dose-1-check ................... Passed 0.09 sec +553: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm +553: -- REGEX is ^Parameters: *(.*)$ +553: -- MATCH_STRING is 0 0 0 -20 0 0 +553: -- PARSED VALUE=|Parameters: 0 0 0 -20 0 0| +553: -- PARSED_VALUE=|0 0 0 -20 0 0| +553: -- LENGTH=13 +553: -- |0 0 0 -20 0 0|0 0 0 -20 0 0| +553: Not an error +442: Not an error +554/578 Test #553: xf-invert-vrs-a-check ................. Passed 0.09 sec +test 564 + Start 564: proton-dose-4d-check + +564: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +564: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +564: Test timeout computed to be: 1500 +555/578 Test #442: plm-reg-point-dmap-a .................. Passed 1.24 sec +test 567 + Start 567: proton-dose-5a-check + +567: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +567: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +567: Test timeout computed to be: 1500 +555: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm +555: -- REGEX is ^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$ +555: -- LOWER_THRESH is -0.52361 +555: -- UPPER_THRESH is -0.52359 +555: -- PARSED VALUE=|Parameters: -0.5236 0 0 0 0 0| +555: -- PARSED_VALUE=|-0.5236| +555: Not an error +556/578 Test #555: xf-invert-vrs-b-check ................. Passed 0.11 sec test 570 Start 570: proton-dose-5d-check 570: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 570: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 570: Test timeout computed to be: 1500 -442: Not an error -556/578 Test #442: plm-reg-point-dmap-a .................. Passed 1.57 sec +558: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt +558: -- REGEX is AVE *([-0-9.]*) +558: -- LOWER_THRESH is 0.140 +558: -- UPPER_THRESH is 0.145 +558: -- PARSED VALUE=|MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000| +558: -- PARSED_VALUE=|0.143515| +558: Not an error +499: RETVAL: 0 +499: STDOUT: bspline_xform_initialize +499: rdims = (5,5,5) +499: vox_per_rgn = (8,8,8) +499: cdims = (8 8 8) +499: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt +499: +499: STDERR: +499: Not an error +557/578 Test #499: plm-warp-pointset-b ................... Passed 0.95 sec test 573 Start 573: proton-dose-6a-check 573: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 573: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 573: Test timeout computed to be: 1500 +558/578 Test #558: proton-dose-1-check ................... Passed 0.13 sec +test 575 + Start 575: proton-dose-8d-stats + +575: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +575: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +575: Test timeout computed to be: 1500 561: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a-stats.stdout.txt 561: -- REGEX is AVE *([-0-9.]*) 561: -- LOWER_THRESH is 0.26 @@ -20026,13 +20305,15 @@ 561: -- PARSED VALUE=|MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000| 561: -- PARSED_VALUE=|0.266114| 561: Not an error -557/578 Test #561: proton-dose-4a-check .................. Passed 0.11 sec -test 575 - Start 575: proton-dose-8d-stats - -575: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -575: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -575: Test timeout computed to be: 1500 +559/578 Test #561: proton-dose-4a-check .................. Passed 0.13 sec +564: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt +564: -- REGEX is AVE *([-0-9.]*) +564: -- LOWER_THRESH is 0.38 +564: -- UPPER_THRESH is 0.39 +564: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000| +564: -- PARSED_VALUE=|0.386816| +564: Not an error +560/578 Test #564: proton-dose-4d-check .................. Passed 0.10 sec 567: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt 567: -- REGEX is AVE *([-0-9.]*) 567: -- LOWER_THRESH is 0.26 @@ -20040,6 +20321,159 @@ 567: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000| 567: -- PARSED_VALUE=|0.266122| 567: Not an error +570: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt +570: -- REGEX is AVE *([-0-9.]*) +570: -- LOWER_THRESH is 0.38 +570: -- UPPER_THRESH is 0.39 +570: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000| +570: -- PARSED_VALUE=|0.386816| +570: Not an error +561/578 Test #567: proton-dose-5a-check .................. Passed 0.12 sec +562/578 Test #570: proton-dose-5d-check .................. Passed 0.08 sec +575: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +575: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha +575: EXPECTED_ERRNO is +573: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt +573: -- REGEX is AVE *([-0-9.]*) +573: -- LOWER_THRESH is 0.26 +573: -- UPPER_THRESH is 0.27 +573: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000| +573: -- PARSED_VALUE=|0.266122| +573: Not an error +421: RETVAL: 0 +421: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha +421: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha +421: Loading fixed roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha +421: Launching registration worker thread +421: Inside registration worker thread +421: Doing registration stage +421: [1] xf_in->m_type = 0, xf_out->m_type = 0 +421: RESAMPLE 1 1: (2 2 2), (2 2 2) +421: RESAMPLE 1 1: (2 2 2), (2 2 2) +421: volume_calc_grad complete. +421: bspline_xform_initialize +421: rdims = (3,5,3) +421: vox_per_rgn = (5,5,5) +421: cdims = (6 8 6) +421: Algorithm flavor = g +421: Threading = 0 +421: Regularization: flavor = c lambda = 0.100000 +421: Regularizer initialized +421: >> Checking JH allocation +421: BSPLINE PARMS +421: max_its = 10 +421: max_feval = 10 +421: BSPLINE XFORM HEADER +421: vox_per_rgn = 5 5 5 +421: roi_offset = 0 0 0 +421: roi_dim = 15 25 15 +421: img_dc = 1 0 0 0 1 0 0 0 1 +421: BST METRICS +421: MET 110110 MSE 1.000000 +421: Setting nmax, mmax = 864 31 +421: >>> START +421: This problem is unconstrained. +421: [ 0, 0] SCORE 66568.047 NV 1690 GM 14792.900 GN 3.94e+03 [ 0.111 s ] +421: MSE 66568.047 RM 0.000 [ 0.075 | 0.036 ] +421: CMIN 0.00 CAVG 0.00 CMAX 0.00 +421: LSD 0.00 +421: [ 0, 1] SCORE 60779.625 NV 1690 GM 13427.228 GN 3.59e+03 [ 0.055 s ] +421: MSE 60779.609 RM 0.015 [ 0.023 | 0.032 ] +421: CMIN -0.46 CAVG -0.00 CMAX 0.10 +421: LSD 1.00 +421: [ 0, 2] SCORE 43202.340 NV 1690 GM 16992.866 GN 4.39e+03 [ 0.072 s ] +421: MSE 43201.965 RM 0.376 [ 0.048 | 0.024 ] +421: CMIN -2.30 CAVG -0.02 CMAX 0.50 +421: LSD 5.00 +421: [ 0, 3] SCORE 11325.080 NV 1619 GM -932.100 GN 1.45e+03 [ 0.084 s ] +421: MSE 11318.452 RM 6.628 [ 0.044 | 0.040 ] +421: CMIN -9.66 CAVG -0.09 CMAX 2.11 +421: LSD 21.00 +421: [ 1, 4] SCORE 5165.491 NV 1647 GM 1195.560 GN 605 [ 0.077 s ] +421: MSE 5160.030 RM 5.461 [ 0.047 | 0.029 ] +421: CMIN -7.99 CAVG -0.09 CMAX 1.46 +421: LSD 4.95 +421: [ 2, 5] SCORE 5370.420 NV 1649 GM -3582.381 GN 910 [ 0.086 s ] +421: MSE 5363.509 RM 6.911 [ 0.046 | 0.040 ] +421: CMIN -8.90 CAVG -0.10 CMAX 1.42 +421: LSD 5.04 +421: [ 2, 6] SCORE 4305.869 NV 1649 GM -1305.969 GN 395 [ 0.088 s ] +421: MSE 4299.880 RM 5.989 [ 0.040 | 0.048 ] +421: CMIN -7.75 CAVG -0.10 CMAX 1.44 +421: LSD 2.37 +421: [ 3, 7] SCORE 4280.987 NV 1653 GM 1734.354 GN 474 [ 0.072 s ] +421: MSE 4275.453 RM 5.534 [ 0.048 | 0.024 ] +421: CMIN -7.64 CAVG -0.09 CMAX 1.40 +421: LSD 1.62 +421: [ 4, 8] SCORE 4194.305 NV 1651 GM 205.505 GN 129 [ 0.068 s ] +421: MSE 4188.512 RM 5.794 [ 0.024 | 0.044 ] +421: CMIN -7.74 CAVG -0.10 CMAX 1.43 +421: LSD 0.60 +421: [ 5, 9] SCORE 4196.242 NV 1645 GM 115.154 GN 112 [ 0.068 s ] +421: MSE 4190.442 RM 5.800 [ 0.024 | 0.044 ] +421: CMIN -7.66 CAVG -0.10 CMAX 1.43 +421: LSD 0.26 +421: [ 5, 10] SCORE 4195.648 NV 1649 GM 201.989 GN 124 [ 0.037 s ] +421: MSE 4189.854 RM 5.795 [ 0.020 | 0.018 ] +421: CMIN -7.72 CAVG -0.10 CMAX 1.43 +421: LSD 0.06 +421: [2] xf_out->m_type = 9, xf_in->m_type = 0 +421: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +421: bspline_xform_initialize +421: rdims = (3,5,3) +421: vox_per_rgn = (10,10,10) +421: cdims = (6 8 6) +421: ** Registration worker thread finished. +421: Writing transformation ... +421: Warping... +421: Running: plm_warp_native +421: Converting input image... +421: Converting xform... +421: bspline_xform_initialize +421: rdims = (3,5,3) +421: vox_per_rgn = (10,10,10) +421: cdims = (6 8 6) +421: Creating output vf... +421: Creating output volume... +421: Running native warper... +421: bspline_warp complete. +421: Back convert to original type... +421: > Convert vf to itk +421: > Conversion complete. +421: plm_warp_native is complete. +421: Saving image... +421: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d-img.mha +421: Saving vf... +421: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d-vf.mha +421: Load: 0.063216 +421: Run: 0.895159 +421: Save: 0.0717082 +421: Total: 1.03008 +421: Finished! +421: +421: STDERR: +421: Not an error +563/578 Test #421: plm-reg-roi-d ......................... Passed 1.48 sec +564/578 Test #573: proton-dose-6a-check .................. Passed 0.10 sec +500: RETVAL: 0 +500: STDOUT: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv +500: +500: STDERR: +500: Not an error +565/578 Test #500: plm-warp-pointset-c ................... Passed 1.00 sec +529: RETVAL: 0 +529: STDOUT: bspline_xform_initialize +529: rdims = (1,1,1) +529: vox_per_rgn = (4,4,4) +529: cdims = (4 4 4) +529: about to xform_convert +529: Converting to (itk) vector field +529: did xform_convert +529: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha +529: +529: STDERR: +529: Not an error +566/578 Test #529: plm-xf-convert-c ...................... Passed 0.65 sec 423: RETVAL: 0 423: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha 423: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha @@ -20076,28 +20510,28 @@ 423: Setting nmax, mmax = 1536 41 423: >>> START 423: This problem is unconstrained. -423: [ 0, 0] SCORE 74227.273 NV 6859 GM 0.000 GN 188 [ 0.179 s ] -423: MSE 74227.273 RM 0.000 [ 0.059 | 0.120 ] +423: [ 0, 0] SCORE 74227.273 NV 6859 GM 0.000 GN 188 [ 0.206 s ] +423: MSE 74227.273 RM 0.000 [ 0.076 | 0.130 ] 423: CMIN 0.00 CAVG 0.00 CMAX 0.00 423: LSD 0.00 -423: [ 0, 1] SCORE 73948.398 NV 6859 GM 0.045 GN 187 [ 0.168 s ] -423: MSE 73948.391 RM 0.010 [ 0.014 | 0.154 ] +423: [ 0, 1] SCORE 73948.398 NV 6859 GM 0.045 GN 187 [ 0.197 s ] +423: MSE 73948.391 RM 0.010 [ 0.034 | 0.163 ] 423: CMIN -0.14 CAVG -0.00 CMAX 0.15 423: LSD 1.00 -423: [ 0, 2] SCORE 72846.922 NV 6859 GM 0.264 GN 183 [ 0.154 s ] -423: MSE 72846.680 RM 0.242 [ 0.029 | 0.125 ] +423: [ 0, 2] SCORE 72846.922 NV 6859 GM 0.264 GN 183 [ 0.161 s ] +423: MSE 72846.680 RM 0.242 [ 0.022 | 0.139 ] 423: CMIN -0.69 CAVG -0.00 CMAX 0.76 423: LSD 5.00 -423: [ 0, 3] SCORE 68660.922 NV 6859 GM 1.168 GN 166 [ 0.157 s ] -423: MSE 68656.656 RM 4.268 [ 0.025 | 0.132 ] +423: [ 0, 3] SCORE 68660.922 NV 6859 GM 1.168 GN 166 [ 0.134 s ] +423: MSE 68656.656 RM 4.268 [ 0.042 | 0.093 ] 423: CMIN -2.91 CAVG -0.00 CMAX 3.18 423: LSD 21.00 -423: [ 1, 4] SCORE 42095.320 NV 6859 GM -11.876 GN 58.8 [ 0.167 s ] -423: MSE 41780.070 RM 315.248 [ 0.018 | 0.148 ] +423: [ 1, 4] SCORE 42095.320 NV 6859 GM -11.876 GN 58.8 [ 0.119 s ] +423: MSE 41780.070 RM 315.248 [ 0.014 | 0.105 ] 423: CMIN -25.44 CAVG -0.01 CMAX 25.37 423: LSD 160.09 -423: [ 2, 5] SCORE 33075.488 NV 6859 GM 41.190 GN 77.9 [ 0.139 s ] -423: MSE 32300.393 RM 775.097 [ 0.014 | 0.126 ] +423: [ 2, 5] SCORE 33075.488 NV 6859 GM 41.190 GN 77.9 [ 0.106 s ] +423: MSE 32300.393 RM 775.097 [ 0.015 | 0.092 ] 423: CMIN -39.12 CAVG 0.00 CMAX 38.06 423: LSD 114.34 423: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -20128,64 +20562,101 @@ 423: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a-img.mha 423: Saving vf... 423: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a-vf.mha -423: Load: 0.206939 -423: Run: 1.00294 -423: Save: 0.055866 -423: Total: 1.26574 +423: Load: 0.145585 +423: Run: 1.0111 +423: Save: 0.0599329 +423: Total: 1.21662 423: Finished! 423: 423: STDERR: -558/578 Test #567: proton-dose-5a-check .................. Passed 0.06 sec 423: Not an error -559/578 Test #423: plm-reg-stiffness-a ................... Passed 1.75 sec -570: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt -570: -- REGEX is AVE *([-0-9.]*) -570: -- LOWER_THRESH is 0.38 -570: -- UPPER_THRESH is 0.39 -570: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000| -570: -- PARSED_VALUE=|0.386816| -570: Not an error -573: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt -573: -- REGEX is AVE *([-0-9.]*) -573: -- LOWER_THRESH is 0.26 -573: -- UPPER_THRESH is 0.27 -573: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000| -573: -- PARSED_VALUE=|0.266122| -573: Not an error -560/578 Test #570: proton-dose-5d-check .................. Passed 0.07 sec -575: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -575: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha -575: EXPECTED_ERRNO is -561/578 Test #573: proton-dose-6a-check .................. Passed 0.06 sec -499: RETVAL: 0 -499: STDOUT: bspline_xform_initialize -499: rdims = (5,5,5) -499: vox_per_rgn = (8,8,8) -499: cdims = (8 8 8) -499: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt -499: -499: STDERR: -499: Not an error -562/578 Test #499: plm-warp-pointset-b ................... Passed 0.85 sec -500: RETVAL: 0 -500: STDOUT: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv -500: -500: STDERR: -500: Not an error -563/578 Test #500: plm-warp-pointset-c ................... Passed 0.86 sec -529: RETVAL: 0 -529: STDOUT: bspline_xform_initialize -529: rdims = (1,1,1) -529: vox_per_rgn = (4,4,4) -529: cdims = (4 4 4) -529: about to xform_convert -529: Converting to (itk) vector field -529: did xform_convert -529: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha -529: -529: STDERR: -529: Not an error -564/578 Test #529: plm-xf-convert-c ...................... Passed 0.76 sec +567/578 Test #423: plm-reg-stiffness-a ................... Passed 1.62 sec +537: RETVAL: 0 +537: STDOUT: Loading fixed... +537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379718.1717523406.804667RTDOSE +537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379718.1717523406.804668RTSTRUCT +537: Found DCM_ReferencedFrameOfReferenceSequence! +537: Found DCM_RTReferencedStudySequence! +537: Trying to load rt dose. +537: Load: DoseGridScaling = 0.000000 +537: RTDOSE: dim = 38 38 38 +537: ipp = -243.421005 -243.421005 -243.421005 +537: spc = 13.157900 13.157900 13.157900 +537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +537: Bits_alloc: 32 +537: Bits_stored: 32 +537: High_bit: 31 +537: Pixel_rep: 0 +537: rc = 1, length = 109744, npix = 54872 +537: Trying to load rt structure set. +537: Adding structure (1), Foreground +537: Structure 1 has color 255\0\0 +537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379718.1717523406.804667RTDOSE +537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379718.1717523406.804668RTSTRUCT +537: Found DCM_ReferencedFrameOfReferenceSequence! +537: Found DCM_RTReferencedStudySequence! +537: Trying to load rt dose. +537: Load: DoseGridScaling = 0.000000 +537: RTDOSE: dim = 38 38 38 +537: ipp = -243.421005 -243.421005 -243.421005 +537: spc = 13.157900 13.157900 13.157900 +537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +537: Bits_alloc: 32 +537: Bits_stored: 32 +537: High_bit: 31 +537: Pixel_rep: 0 +537: rc = 1, length = 109744, npix = 54872 +537: Trying to load rt structure set. +537: Adding structure (1), Foreground +537: Structure 1 has color 255\0\0 +537: Loading moving... +537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886496RTDOSE +537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886497RTSTRUCT +537: Found DCM_ReferencedFrameOfReferenceSequence! +537: Found DCM_RTReferencedStudySequence! +537: Trying to load rt dose. +537: Load: DoseGridScaling = 0.000000 +537: RTDOSE: dim = 38 38 38 +537: ipp = -243.421005 -243.421005 -243.421005 +537: spc = 13.157900 13.157900 13.157900 +537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +537: Bits_alloc: 32 +537: Bits_stored: 32 +537: High_bit: 31 +537: Pixel_rep: 0 +537: rc = 1, length = 109744, npix = 54872 +537: Trying to load rt structure set. +537: Adding structure (1), Foreground +537: Structure 1 has color 255\0\0 +537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886496RTDOSE +537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886497RTSTRUCT +537: Found DCM_ReferencedFrameOfReferenceSequence! +537: Found DCM_RTReferencedStudySequence! +537: Trying to load rt dose. +537: Load: DoseGridScaling = 0.000000 +537: RTDOSE: dim = 38 38 38 +537: ipp = -243.421005 -243.421005 -243.421005 +537: spc = 13.157900 13.157900 13.157900 +537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +537: Bits_alloc: 32 +537: Bits_stored: 32 +537: High_bit: 31 +537: Pixel_rep: 0 +537: rc = 1, length = 109744, npix = 54872 +537: Trying to load rt structure set. +537: Adding structure (1), Foreground +537: Structure 1 has color 255\0\0 +537: Saving sro +537: ITK_AFF_OFF +537: 20.000000 0.000000 0.000000 +537: SRO +537: 1.000000\0.000000\0.000000\-20.000000\0.000000\1.000000\0.000000\-0.000000\0.000000\0.000000\1.000000\-0.000000\0.0\0.0\0.0\1.0 +537: Trying to save SRO: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e/sro.dcm +537: Done saving sro +537: +537: STDERR: +537: Not an error +568/578 Test #537: plm-xf-convert-e ...................... Passed 0.65 sec 538: RETVAL: 0 538: STDOUT: Loading fixed... 538: Loading moving... @@ -20228,18 +20699,18 @@ 422: MSE [ 0, 0, 1.00] 20000.000 [-0.9999999727511648, 0.00023344735891123153, 0] 422: :: [0, 0, 0] 422: * -422: MSE [ 1, 1, 1.00] 16666.407 [-1.9999999583532024, 0.00006375373999518562, 4.073670920162629e-17] -3333.59 +422: MSE [ 1, 1, 1.00] 16666.407 [-1.9999999583532027, 0.00006375373999509384, 1.1202595030447236e-16] -3333.59 422: :: [-0.9999999727511648, 0.00023344735891123153, 0] 422: * -422: MSE [ 2, 2, 1.00] 21428.450 [-2.999999953945063, 0.00015764878267371388, 1.9681769757797306e-16] 4762.04 -422: MSE [ 3, 3, 0.50] 17856.955 [-2.499999978937018, -4.396560046960132e-7, 2.026088710093286e-16] -3571.49 -422: MSE [ 4, 4, 0.50] 18749.999 [-1.999999979024236, -0.000009778710908822031, 2.026088710093286e-16] 893.04 -422: MSE [ 5, 5, 0.25] 21428.553 [-2.249999944663833, 0.00012129455271900958, 2.026088710093286e-16] 2678.55 -422: MSE [ 6, 6, 0.12] 19865.879 [-2.1250000509246822, -0.00004169379354033668, 3.072255580543447e-16] -1562.67 -422: MSE [ 7, 7, 0.06] 20591.445 [-2.187499942399231, 0.00007477796101122572, 2.968535562691025e-16] 725.57 -422: MSE [ 8, 8, 0.03] 20214.720 [-2.1562503690872257, -0.00008852487918382205, 1.875149349236142e-16] -376.73 -422: MSE [ 9, 9, 0.02] 20399.540 [-2.1718751050913467, 0.0000023035388789350946, 2.1043273395374416e-16] 184.82 -422: EndEvent: [-2.1718751050913467, 0.0000023035388789350946, 2.1043273395374416e-16] +422: MSE [ 2, 2, 1.00] 21428.450 [-2.9999999539450632, 0.00015764878267367493, 2.0307319352400874e-16] 4762.04 +422: MSE [ 3, 3, 0.50] 17856.955 [-2.4999999789370184, -4.396560047260185e-7, 2.1465554038671977e-16] -3571.49 +422: MSE [ 4, 4, 0.50] 18749.999 [-1.9999999790242364, -0.000009778710908865035, 2.388665339710065e-16] 893.04 +422: MSE [ 5, 5, 0.25] 21428.553 [-2.2499999446638332, 0.00012129455271895143, 2.2260809930520186e-16] 2678.55 +422: MSE [ 6, 6, 0.12] 19865.879 [-2.1250000509246827, -0.00004169379354040909, 2.53121299693331e-16] -1562.67 +422: MSE [ 7, 7, 0.06] 20591.445 [-2.1874999423992314, 0.00007477796101170825, 2.0904029210605143e-16] 725.57 +422: MSE [ 8, 8, 0.03] 20214.720 [-2.156250369087226, -0.00008852487918328234, 9.970167076056483e-17] -376.73 +422: MSE [ 9, 9, 0.02] 20399.540 [-2.171875105091347, 0.0000023035388794752305, 1.0471493929840602e-16] 184.82 +422: EndEvent: [-2.171875105091347, 0.0000023035388794752305, 1.0471493929840602e-16] 422: RegularStepGradientDescentOptimizer: Maximum number of iterations (10) exceeded. 422: ITK registration complete 422: [2] xf_out->m_type = 1, xf_in->m_type = 0 @@ -20270,28 +20741,28 @@ 422: Setting nmax, mmax = 864 31 422: >>> START 422: This problem is unconstrained. -422: [ 0, 0] SCORE 17856.865 NV 5250 GM 596.305 GN 997 [ 0.066 s ] -422: MSE 17856.865 RM 0.000 [ 0.038 | 0.028 ] +422: [ 0, 0] SCORE 17856.865 NV 5250 GM 596.305 GN 997 [ 0.120 s ] +422: MSE 17856.865 RM 0.000 [ 0.071 | 0.048 ] 422: CMIN -1.00 CAVG -0.33 CMAX 0.00 422: LSD 0.00 -422: [ 0, 1] SCORE 15761.621 NV 5415 GM 4002.270 GN 1.58e+03 [ 0.076 s ] -422: MSE 15761.603 RM 0.019 [ 0.023 | 0.053 ] +422: [ 0, 1] SCORE 15761.621 NV 5415 GM 4002.270 GN 1.58e+03 [ 0.080 s ] +422: MSE 15761.603 RM 0.019 [ 0.036 | 0.044 ] 422: CMIN -1.35 CAVG -0.33 CMAX 0.11 422: LSD 1.00 -422: [ 0, 2] SCORE 11419.833 NV 5415 GM 3904.956 GN 1.2e+03 [ 0.068 s ] -422: MSE 11419.360 RM 0.473 [ 0.044 | 0.024 ] +422: [ 0, 2] SCORE 11419.833 NV 5415 GM 3904.956 GN 1.2e+03 [ 0.073 s ] +422: MSE 11419.360 RM 0.473 [ 0.048 | 0.026 ] 422: CMIN -2.76 CAVG -0.34 CMAX 0.57 422: LSD 5.00 -422: [ 0, 3] SCORE 11865.492 NV 5349 GM 4432.436 GN 1.31e+03 [ 0.054 s ] -422: MSE 11857.157 RM 8.335 [ 0.016 | 0.038 ] +422: [ 0, 3] SCORE 11865.492 NV 5349 GM 4432.436 GN 1.31e+03 [ 0.082 s ] +422: MSE 11857.157 RM 8.335 [ 0.035 | 0.048 ] 422: CMIN -8.39 CAVG -0.35 CMAX 4.37 422: LSD 21.00 -422: [ 1, 4] SCORE 2624.840 NV 5330 GM 1520.288 GN 405 [ 0.070 s ] -422: MSE 2620.351 RM 4.489 [ 0.038 | 0.032 ] +422: [ 1, 4] SCORE 2624.840 NV 5330 GM 1520.288 GN 405 [ 0.057 s ] +422: MSE 2620.351 RM 4.489 [ 0.036 | 0.022 ] 422: CMIN -7.51 CAVG -0.37 CMAX 1.81 422: LSD 7.90 -422: [ 2, 5] SCORE 2070.753 NV 5316 GM -1231.525 GN 432 [ 0.064 s ] -422: MSE 2064.967 RM 5.786 [ 0.032 | 0.032 ] +422: [ 2, 5] SCORE 2070.753 NV 5316 GM -1231.525 GN 432 [ 0.078 s ] +422: MSE 2064.967 RM 5.786 [ 0.038 | 0.040 ] 422: CMIN -8.62 CAVG -0.39 CMAX 1.40 422: LSD 4.35 422: [2] xf_out->m_type = 9, xf_in->m_type = 1 @@ -20322,28 +20793,28 @@ 422: Setting nmax, mmax = 864 31 422: >>> START 422: This problem is unconstrained. -422: [ 0, 0] SCORE 2070.753 NV 5316 GM -1231.525 GN 432 [ 0.070 s ] -422: MSE 2064.967 RM 5.786 [ 0.030 | 0.040 ] +422: [ 0, 0] SCORE 2070.753 NV 5316 GM -1231.525 GN 432 [ 0.054 s ] +422: MSE 2064.967 RM 5.786 [ 0.038 | 0.016 ] 422: CMIN -8.62 CAVG -0.39 CMAX 1.40 422: LSD 0.00 -422: [ 0, 1] SCORE 1741.366 NV 5318 GM -709.336 GN 291 [ 0.045 s ] -422: MSE 1736.001 RM 5.365 [ 0.016 | 0.029 ] +422: [ 0, 1] SCORE 1741.366 NV 5318 GM -709.336 GN 291 [ 0.052 s ] +422: MSE 1736.001 RM 5.365 [ 0.032 | 0.020 ] 422: CMIN -8.13 CAVG -0.39 CMAX 1.38 422: LSD 1.00 -422: [ 1, 2] SCORE 1448.726 NV 5351 GM 553.138 GN 184 [ 0.043 s ] -422: MSE 1444.063 RM 4.664 [ 0.019 | 0.024 ] +422: [ 1, 2] SCORE 1448.726 NV 5351 GM 553.138 GN 184 [ 0.048 s ] +422: MSE 1444.063 RM 4.664 [ 0.016 | 0.032 ] 422: CMIN -7.05 CAVG -0.38 CMAX 1.33 422: LSD 2.47 422: [ 2, 3] SCORE 1411.069 NV 5344 GM 258.307 GN 92.3 [ 0.044 s ] -422: MSE 1406.122 RM 4.946 [ 0.012 | 0.032 ] +422: MSE 1406.122 RM 4.946 [ 0.016 | 0.028 ] 422: CMIN -7.20 CAVG -0.39 CMAX 1.33 422: LSD 0.62 -422: [ 3, 4] SCORE 1391.029 NV 5340 GM -132.885 GN 63.2 [ 0.048 s ] -422: MSE 1385.782 RM 5.247 [ 0.016 | 0.032 ] +422: [ 3, 4] SCORE 1391.029 NV 5340 GM -132.885 GN 63.2 [ 0.030 s ] +422: MSE 1385.782 RM 5.247 [ 0.019 | 0.010 ] 422: CMIN -7.41 CAVG -0.39 CMAX 1.30 422: LSD 0.81 -422: [ 4, 5] SCORE 1380.556 NV 5338 GM 21.541 GN 39.1 [ 0.040 s ] -422: MSE 1375.316 RM 5.240 [ 0.016 | 0.024 ] +422: [ 4, 5] SCORE 1380.556 NV 5338 GM 21.541 GN 39.1 [ 0.023 s ] +422: MSE 1375.316 RM 5.240 [ 0.014 | 0.009 ] 422: CMIN -7.42 CAVG -0.39 CMAX 1.30 422: LSD 0.36 422: [2] xf_out->m_type = 9, xf_in->m_type = 9 @@ -20374,28 +20845,28 @@ 422: Setting nmax, mmax = 864 31 422: >>> START 422: This problem is unconstrained. -422: [ 0, 0] SCORE 1380.556 NV 5338 GM 21.541 GN 39.1 [ 0.038 s ] -422: MSE 1375.316 RM 5.240 [ 0.014 | 0.024 ] +422: [ 0, 0] SCORE 1380.556 NV 5338 GM 21.541 GN 39.1 [ 0.045 s ] +422: MSE 1375.316 RM 5.240 [ 0.021 | 0.024 ] 422: CMIN -7.42 CAVG -0.39 CMAX 1.30 422: LSD 0.00 -422: [ 0, 1] SCORE 1360.810 NV 5336 GM 259.462 GN 115 [ 0.036 s ] -422: MSE 1355.755 RM 5.056 [ 0.012 | 0.024 ] +422: [ 0, 1] SCORE 1360.810 NV 5336 GM 259.462 GN 115 [ 0.032 s ] +422: MSE 1355.755 RM 5.056 [ 0.021 | 0.011 ] 422: CMIN -7.23 CAVG -0.39 CMAX 1.32 422: LSD 1.00 -422: [ 0, 2] SCORE 1363.081 NV 5336 GM 215.275 GN 64.4 [ 0.026 s ] -422: MSE 1357.933 RM 5.148 [ 0.012 | 0.014 ] +422: [ 0, 2] SCORE 1363.081 NV 5336 GM 215.275 GN 64.4 [ 0.032 s ] +422: MSE 1357.933 RM 5.148 [ 0.016 | 0.016 ] 422: CMIN -7.33 CAVG -0.39 CMAX 1.31 422: LSD 0.47 -422: [ 1, 3] SCORE 1355.968 NV 5336 GM 93.286 GN 47.5 [ 0.034 s ] -422: MSE 1350.760 RM 5.209 [ 0.022 | 0.012 ] +422: [ 1, 3] SCORE 1355.968 NV 5336 GM 93.286 GN 47.5 [ 0.018 s ] +422: MSE 1350.760 RM 5.209 [ 0.008 | 0.010 ] 422: CMIN -7.36 CAVG -0.39 CMAX 1.31 422: LSD 0.24 -422: [ 2, 4] SCORE 1327.456 NV 5313 GM -133.711 GN 39.2 [ 0.036 s ] -422: MSE 1321.881 RM 5.575 [ 0.012 | 0.024 ] +422: [ 2, 4] SCORE 1327.456 NV 5313 GM -133.711 GN 39.2 [ 0.015 s ] +422: MSE 1321.881 RM 5.575 [ 0.006 | 0.009 ] 422: CMIN -7.53 CAVG -0.39 CMAX 1.33 422: LSD 1.49 -422: [ 3, 5] SCORE 1315.612 NV 5295 GM -129.321 GN 46.1 [ 0.025 s ] -422: MSE 1309.647 RM 5.965 [ 0.012 | 0.014 ] +422: [ 3, 5] SCORE 1315.612 NV 5295 GM -129.321 GN 46.1 [ 0.027 s ] +422: MSE 1309.647 RM 5.965 [ 0.011 | 0.016 ] 422: CMIN -7.65 CAVG -0.40 CMAX 1.39 422: LSD 1.60 422: [2] xf_out->m_type = 9, xf_in->m_type = 9 @@ -20426,112 +20897,26 @@ 422: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e-img.mha 422: Saving vf... 422: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e-vf.mha -422: Load: 0.23659 -422: Run: 1.10786 -422: Save: 0.0597301 -422: Total: 1.40418 +422: Load: 0.146279 +422: Run: 1.18762 +422: Save: 0.0391271 +422: Total: 1.37302 422: Finished! 422: 422: STDERR: 422: Not an error -565/578 Test #422: plm-reg-roi-e ......................... Passed 2.10 sec -566/578 Test #538: plm-xf-convert-f ...................... Passed 0.76 sec +569/578 Test #538: plm-xf-convert-f ...................... Passed 0.75 sec +570/578 Test #422: plm-reg-roi-e ......................... Passed 1.77 sec 575: RETVAL: 0 575: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 216000 575: 575: STDERR: 575: Not an error -567/578 Test #575: proton-dose-8d-stats .................. Passed 0.39 sec -537: RETVAL: 0 -537: STDOUT: Loading fixed... -537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67599RTDOSE -537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67600RTSTRUCT -537: Found DCM_ReferencedFrameOfReferenceSequence! -537: Found DCM_RTReferencedStudySequence! -537: Trying to load rt dose. -537: Load: DoseGridScaling = 0.000000 -537: RTDOSE: dim = 38 38 38 -537: ipp = -243.421005 -243.421005 -243.421005 -537: spc = 13.157900 13.157900 13.157900 -537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -537: Bits_alloc: 32 -537: Bits_stored: 32 -537: High_bit: 31 -537: Pixel_rep: 0 -537: rc = 1, length = 109744, npix = 54872 -537: Trying to load rt structure set. -537: Adding structure (1), Foreground -537: Structure 1 has color 255\0\0 -537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67599RTDOSE -537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67600RTSTRUCT -537: Found DCM_ReferencedFrameOfReferenceSequence! -537: Found DCM_RTReferencedStudySequence! -537: Trying to load rt dose. -537: Load: DoseGridScaling = 0.000000 -537: RTDOSE: dim = 38 38 38 -537: ipp = -243.421005 -243.421005 -243.421005 -537: spc = 13.157900 13.157900 13.157900 -537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -537: Bits_alloc: 32 -537: Bits_stored: 32 -537: High_bit: 31 -537: Pixel_rep: 0 -537: rc = 1, length = 109744, npix = 54872 -537: Trying to load rt structure set. -537: Adding structure (1), Foreground -537: Structure 1 has color 255\0\0 -537: Loading moving... -537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8627RTDOSE -537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8628RTSTRUCT -537: Found DCM_ReferencedFrameOfReferenceSequence! -537: Found DCM_RTReferencedStudySequence! -537: Trying to load rt dose. -537: Load: DoseGridScaling = 0.000000 -537: RTDOSE: dim = 38 38 38 -537: ipp = -243.421005 -243.421005 -243.421005 -537: spc = 13.157900 13.157900 13.157900 -537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -537: Bits_alloc: 32 -537: Bits_stored: 32 -537: High_bit: 31 -537: Pixel_rep: 0 -537: rc = 1, length = 109744, npix = 54872 -537: Trying to load rt structure set. -537: Adding structure (1), Foreground -537: Structure 1 has color 255\0\0 -537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8627RTDOSE -537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8628RTSTRUCT -537: Found DCM_ReferencedFrameOfReferenceSequence! -537: Found DCM_RTReferencedStudySequence! -537: Trying to load rt dose. -537: Load: DoseGridScaling = 0.000000 -537: RTDOSE: dim = 38 38 38 -537: ipp = -243.421005 -243.421005 -243.421005 -537: spc = 13.157900 13.157900 13.157900 -537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -537: Bits_alloc: 32 -537: Bits_stored: 32 -537: High_bit: 31 -537: Pixel_rep: 0 -537: rc = 1, length = 109744, npix = 54872 -537: Trying to load rt structure set. -537: Adding structure (1), Foreground -537: Structure 1 has color 255\0\0 -537: Saving sro -537: ITK_AFF_OFF -537: 20.000000 0.000000 0.000000 -537: SRO -537: 1.000000\0.000000\0.000000\-20.000000\0.000000\1.000000\0.000000\-0.000000\0.000000\0.000000\1.000000\-0.000000\0.0\0.0\0.0\1.0 -537: Trying to save SRO: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e/sro.dcm -537: Done saving sro -537: -537: STDERR: -537: Not an error -568/578 Test #537: plm-xf-convert-e ...................... Passed 0.82 sec +571/578 Test #575: proton-dose-8d-stats .................. Passed 0.40 sec 539: RETVAL: 0 539: STDOUT: Loading fixed... -539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8627RTDOSE -539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8628RTSTRUCT +539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886496RTDOSE +539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886497RTSTRUCT 539: Found DCM_ReferencedFrameOfReferenceSequence! 539: Found DCM_RTReferencedStudySequence! 539: Trying to load rt dose. @@ -20548,8 +20933,8 @@ 539: Trying to load rt structure set. 539: Adding structure (1), Foreground 539: Structure 1 has color 255\0\0 -539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8627RTDOSE -539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8628RTSTRUCT +539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886496RTDOSE +539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379705.1717523406.886497RTSTRUCT 539: Found DCM_ReferencedFrameOfReferenceSequence! 539: Found DCM_RTReferencedStudySequence! 539: Trying to load rt dose. @@ -20567,8 +20952,8 @@ 539: Adding structure (1), Foreground 539: Structure 1 has color 255\0\0 539: Loading moving... -539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67599RTDOSE -539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67600RTSTRUCT +539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379718.1717523406.804667RTDOSE +539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379718.1717523406.804668RTSTRUCT 539: Found DCM_ReferencedFrameOfReferenceSequence! 539: Found DCM_RTReferencedStudySequence! 539: Trying to load rt dose. @@ -20585,8 +20970,8 @@ 539: Trying to load rt structure set. 539: Adding structure (1), Foreground 539: Structure 1 has color 255\0\0 -539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67599RTDOSE -539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67600RTSTRUCT +539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379718.1717523406.804667RTDOSE +539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3379718.1717523406.804668RTSTRUCT 539: Found DCM_ReferencedFrameOfReferenceSequence! 539: Found DCM_RTReferencedStudySequence! 539: Trying to load rt dose. @@ -20609,7 +20994,7 @@ 539: 539: STDERR: 539: Not an error -569/578 Test #539: plm-xf-convert-g ...................... Passed 0.80 sec +572/578 Test #539: plm-xf-convert-g ...................... Passed 0.77 sec 576: RETVAL: 0 576: STDOUT: Skin file defined. Modifying input ct... 576: FPD = 320.500029, BPD = 821.195355 @@ -20623,7 +21008,7 @@ 576: 576: STDERR: 576: Not an error -570/578 Test #576: wed-a ................................. Passed 4.90 sec +573/578 Test #576: wed-a ................................. Passed 3.79 sec test 577 Start 577: wed-b @@ -20655,7 +21040,7 @@ 578: 578: STDERR: 578: Not an error -571/578 Test #578: wed-c ................................. Passed 1.17 sec +574/578 Test #578: wed-c ................................. Passed 1.02 sec 577: RETVAL: 0 577: STDOUT: Loading rpl 577: -> /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.rpl @@ -20674,7 +21059,7 @@ 577: 577: STDERR: 577: Not an error -572/578 Test #577: wed-b ................................. Passed 2.90 sec +575/578 Test #577: wed-b ................................. Passed 2.10 sec 471: RETVAL: 0 471: STDOUT: Contrast threshold = 0.030000 471: Curvature threshold = 172.302505 @@ -20891,7 +21276,7 @@ 471: 471: STDERR: 471: Not an error -573/578 Test #471: plm-sift-a ............................ Passed 15.39 sec +576/578 Test #471: plm-sift-a ............................ Passed 9.15 sec test 472 Start 472: plm-sift-a-check-1 @@ -20912,7 +21297,6 @@ 472: -- LENGTH=20 472: -- |-7.500,7.500,-17.500|-7.500,7.500,-17.500| 472: Not an error -574/578 Test #472: plm-sift-a-check-1 .................... Passed 0.06 sec 473: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv 473: -- REGEX is ^p1-1,(.*) 473: -- MATCH_STRING is -7.500,7.500,-22.500 @@ -20921,353 +21305,12 @@ 473: -- LENGTH=20 473: -- |-7.500,7.500,-22.500|-7.500,7.500,-22.500| 473: Not an error -575/578 Test #473: plm-sift-a-check-2 .................... Passed 0.06 sec -562: RETVAL: 0 -562: STDOUT: -562: [PLAN] -562: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha -562: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha -562: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha -562: debug : 0 -562: dose norm : 100 -562: -562: [SETTINGS] -562: flavor: d ** -562: homo_approx: n ** -562: ray_step: 1 ** -562: aperture_out: ** -562: proj_dose_out: ** -562: proj_img_out: ** -562: range_comp_out: ** -562: sigma_out: ** -562: wed_out: ** -562: beam_weight: 1 ** -562: -562: [GEOMETRY & APERTURE] -562: source: 0 -2000 0 ** -562: isocenter: 0 0 0 ** -562: vup: 0 0 1 ** -562: offset: 1500 ** -562: ap_center in pixels: 20 20 ** -562: i_res: 41 41 ** -562: spacing: 3.75 3.75 ** -562: source_size: 0 ** -562: ap_file_in: ** -562: rc_file_in: ** -562: smearing: 5 ** -562: -562: [PEAK] -562: E0: P0 -562: spread: P0 -562: weight: P0 -562: -562: Start dose calculation Beam 1 -562: Plan_calc::compute_beam_dose(beam) entry -- -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: Priority 5. Target detected. -562: Computing beam modifiers for passive target -562: Compute target wepl_min_max... -562: Apply lateral smearing to the target... -562: Smearing = 5.000000, Smearing_ap = 3.750000 -562: Strel size = (1,1), (3,3) -562: 0 1 0 -562: 1 1 1 -562: 0 1 0 -562: Apply proximal and distal ... -562: Compute max wed... -562: Compute the aperture... -562: Compute range compensator... -562: Max wed in the target is 117.554 mm. -562: Min wed in the target is 88.5526 mm. -562: ires = 41 41 -562: proj_vol dim = 41 41 302 -562: prescription min/max: 88.5526 mm, 117.554 mm. -562: -562: 22 Mono-energetic BP used: -562: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 -562: Adding peak to sobp (130.000000, 1.000000, 0.895612) [0.010000, 140.000000] -562: Adding peak to sobp (129.000000, 1.000000, 0.143334) [0.010000, 140.000000] -562: Adding peak to sobp (128.000000, 1.000000, 0.216499) [0.010000, 140.000000] -562: Adding peak to sobp (127.000000, 1.000000, 0.160917) [0.010000, 140.000000] -562: Adding peak to sobp (126.000000, 1.000000, 0.140926) [0.010000, 140.000000] -562: Adding peak to sobp (125.000000, 1.000000, 0.124814) [0.010000, 140.000000] -562: Adding peak to sobp (124.000000, 1.000000, 0.113261) [0.010000, 140.000000] -562: Adding peak to sobp (123.000000, 1.000000, 0.102876) [0.010000, 140.000000] -562: Adding peak to sobp (122.000000, 1.000000, 0.096644) [0.010000, 140.000000] -562: Adding peak to sobp (121.000000, 1.000000, 0.089393) [0.010000, 140.000000] -562: Adding peak to sobp (120.000000, 1.000000, 0.083935) [0.010000, 140.000000] -562: Adding peak to sobp (119.000000, 1.000000, 0.078956) [0.010000, 140.000000] -562: Adding peak to sobp (118.000000, 1.000000, 0.074957) [0.010000, 140.000000] -562: Adding peak to sobp (117.000000, 1.000000, 0.071067) [0.010000, 140.000000] -562: Adding peak to sobp (116.000000, 1.000000, 0.067803) [0.010000, 140.000000] -562: Adding peak to sobp (115.000000, 1.000000, 0.064859) [0.010000, 140.000000] -562: Adding peak to sobp (114.000000, 1.000000, 0.062045) [0.010000, 140.000000] -562: Adding peak to sobp (113.000000, 1.000000, 0.059730) [0.010000, 140.000000] -562: Adding peak to sobp (112.000000, 1.000000, 0.057228) [0.010000, 140.000000] -562: Adding peak to sobp (111.000000, 1.000000, 0.056709) [0.010000, 140.000000] -562: Adding peak to sobp (110.000000, 1.000000, 0.045556) [0.010000, 140.000000] -562: Adding peak to sobp (109.000000, 1.000000, 0.079095) [0.010000, 140.000000] -562: **** (1) -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.87445 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000474397 mm. -562: Global sigma computed - Global sigma_max = 2.87445 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.86823 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000479245 mm. -562: Global sigma computed - Global sigma_max = 2.86823 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.81247 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000485151 mm. -562: Global sigma computed - Global sigma_max = 2.81247 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.80639 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000490292 mm. -562: Global sigma computed - Global sigma_max = 2.80639 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.74919 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000495583 mm. -562: Global sigma computed - Global sigma_max = 2.74919 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.69289 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000501994 mm. -562: Global sigma computed - Global sigma_max = 2.69289 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.68596 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000506613 mm. -562: Global sigma computed - Global sigma_max = 2.68596 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.62886 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000512341 mm. -562: Global sigma computed - Global sigma_max = 2.62886 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.57127 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000517222 mm. -562: Global sigma computed - Global sigma_max = 2.57127 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.56307 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000523251 mm. -562: Global sigma computed - Global sigma_max = 2.56307 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.50537 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000528418 mm. -562: Global sigma computed - Global sigma_max = 2.50537 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.49685 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000534772 mm. -562: Global sigma computed - Global sigma_max = 2.49685 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.4384 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000540249 mm. -562: Global sigma computed - Global sigma_max = 2.4384 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.42949 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000546957 mm. -562: Global sigma computed - Global sigma_max = 2.42949 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.37035 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000552773 mm. -562: Global sigma computed - Global sigma_max = 2.37035 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.36098 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000559867 mm. -562: Global sigma computed - Global sigma_max = 2.36098 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.30119 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000566053 mm. -562: Global sigma computed - Global sigma_max = 2.30119 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.29132 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000573569 mm. -562: Global sigma computed - Global sigma_max = 2.29132 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.23096 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000580162 mm. -562: Global sigma computed - Global sigma_max = 2.23096 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.22053 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000588138 mm. -562: Global sigma computed - Global sigma_max = 2.22053 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.15969 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000595178 mm. -562: Global sigma computed - Global sigma_max = 2.15969 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: sigma_img: 41 41 302 -562: dim: 41 41 302 -562: Sigma patient computed - sigma_pt_max = 2.14863 mm. -562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) -562: Sigma range compensator computed - sigma_rc_max = 0.000603663 mm. -562: Global sigma computed - Global sigma_max = 2.14863 mm. -562: Setting RVRTS = 1 -562: FPD = 347.500001, BPD = 649.116731 -562: 41 41 302 -562: Raw dose at the maximum (0, 5, 0) : 10.689 A.U. -562: Dose normalized at the maximum to 1 x 100%. -562: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm -562: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha -562: Sigma: 0.321816 seconds -562: Calc: 35.195237 seconds -562: IO: 0.168084 seconds -562: Reformat: 0.025187 seconds -562: Misc: 0.039748 seconds -562: done. -562: -562: Total execution time : 35.756905 seconds. -562: -562: STDERR: -562: Not an error -576/578 Test #562: proton-dose-4d ........................ Passed 36.26 sec -test 563 - Start 563: proton-dose-4d-stats - -563: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -563: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -563: Test timeout computed to be: 1500 -563: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -563: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha -563: EXPECTED_ERRNO is -563: RETVAL: 0 -563: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000 -563: -563: STDERR: -563: Not an error -577/578 Test #563: proton-dose-4d-stats .................. Passed 0.30 sec -test 564 - Start 564: proton-dose-4d-check - -564: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -564: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -564: Test timeout computed to be: 1500 -564: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt -564: -- REGEX is AVE *([-0-9.]*) -564: -- LOWER_THRESH is 0.38 -564: -- UPPER_THRESH is 0.39 -564: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000| -564: -- PARSED_VALUE=|0.386816| -564: Not an error -578/578 Test #564: proton-dose-4d-check .................. Passed 0.05 sec +577/578 Test #472: plm-sift-a-check-1 .................... Passed 0.03 sec +578/578 Test #473: plm-sift-a-check-2 .................... Passed 0.02 sec 100% tests passed, 0 tests failed out of 578 -Total Test time (real) = 51.24 sec +Total Test time (real) = 25.11 sec make[2]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1' create-stamp debian/debhelper-build-stamp @@ -21275,7 +21318,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/plastimatch-1.9.4+dfsg.1' dh_auto_install - cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/plastimatch-1.9.4\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/plastimatch-1.9.4\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/plastimatch-1.9.4+dfsg.1 -B/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -21727,12 +21770,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3239613/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3239613/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3373719 and its subdirectories -I: Current time: Tue May 2 23:14:15 -12 2023 -I: pbuilder-time-stamp: 1683112455 +I: removing directory /srv/workspace/pbuilder/3239613 and its subdirectories +I: Current time: Wed Jun 5 07:51:50 +14 2024 +I: pbuilder-time-stamp: 1717523510