Diff of the two buildlogs: -- --- b1/build.log 2023-04-18 11:24:25.532519545 +0000 +++ b2/build.log 2023-04-18 11:25:08.170627427 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon May 20 05:45:50 -12 2024 -I: pbuilder-time-stamp: 1716227150 +I: Current time: Wed Apr 19 01:24:26 +14 2023 +I: pbuilder-time-stamp: 1681817066 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz] I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Oct 14 00:22:50 2021 -12 +gpgv: Signature made Fri Oct 15 02:22:50 2021 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key @@ -33,135 +33,167 @@ dpkg-source: info: applying fix-arm64.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2152435/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1907717/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 19 01:24 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1907717/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1907717/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='3e1a7e2997ac40938422730208851310' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2152435' - PS1='# ' - PS2='> ' + INVOCATION_ID=ee506be32852483ba02a799c1c23d76e + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1907717 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wmZRMWa3/pbuilderrc_8nVc --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wmZRMWa3/b1 --logfile b1/build.log ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wmZRMWa3/pbuilderrc_RMLQ --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wmZRMWa3/b2 --logfile b2/build.log --extrapackages usrmerge ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 2023 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 2023 more - -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount - -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 2023 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/2152435/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Feb 13 10:05 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more + -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount + -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Feb 13 10:05 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 06:31 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Apr 19 01:24 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 14520 Nov 3 06:31 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/1907717/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -270,7 +302,7 @@ Get: 59 http://deb.debian.org/debian bookworm/main amd64 libssw0 amd64 1.1-13 [19.7 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libssw-dev amd64 1.1-13 [22.4 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libtclap-dev amd64 1.2.5-1+b1 [3360 kB] -Fetched 40.4 MB in 1s (48.3 MB/s) +Fetched 40.4 MB in 0s (84.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -528,8 +560,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/1907717/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/1907717/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes dpkg-buildpackage: info: source package ngmlr dpkg-buildpackage: info: source version 0.2.7+git20210816.a2a31fb+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -601,77 +644,67 @@ -- Build files have been written to: /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg -B/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/depend -make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ngmlr.dir/DependInfo.cmake --color= make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/depend make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/recompile_always.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ngmlr.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/build +make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/build make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && touch /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp -make[3]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' -make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/build make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' -[ 4%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o -[ 8%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -[ 8%] Built target recompile_always +[ 4%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrix.cpp -[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o +[ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o +[ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o +[ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o +[ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o +[ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o +[ 28%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o +[ 28%] Built target recompile_always +[ 32%] Building CXX object src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o +[ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o +[ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o +[ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o +[ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o +[ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrixFast.cpp -[ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o +[ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o -MF CMakeFiles/ngmlr.dir/ArgParser.cpp.o.d -o CMakeFiles/ngmlr.dir/ArgParser.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ArgParser.cpp -[ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o -[ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CS.cpp.o -MF CMakeFiles/ngmlr.dir/CS.cpp.o.d -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CS.cpp cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o -MF CMakeFiles/ngmlr.dir/CSstatic.cpp.o.d -o CMakeFiles/ngmlr.dir/CSstatic.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CSstatic.cpp cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlign.cpp -[ 28%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -[ 32%] Building CXX object src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlignFast.cpp cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -MF CMakeFiles/ngmlr.dir/LinearRegression.cpp.o.d -o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/LinearRegression.cpp -[ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/Logging.cpp.o -MF CMakeFiles/ngmlr.dir/Logging.cpp.o.d -o CMakeFiles/ngmlr.dir/Logging.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp -[ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -MF CMakeFiles/ngmlr.dir/MappedRead.cpp.o.d -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/MappedRead.cpp -[ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/main.cpp.o -MF CMakeFiles/ngmlr.dir/main.cpp.o.d -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp -[ 48%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -[ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGM.cpp.o -MF CMakeFiles/ngmlr.dir/NGM.cpp.o.d -o CMakeFiles/ngmlr.dir/NGM.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGM.cpp cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -MF CMakeFiles/ngmlr.dir/NGMTask.cpp.o.d -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGMTask.cpp -[ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentBuffer.cpp -[ 60%] Building CXX object src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -[ 64%] Building CXX object src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o +[ 60%] Building CXX object src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -MF CMakeFiles/ngmlr.dir/PrefixTable.cpp.o.d -o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/PrefixTable.cpp -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -MF CMakeFiles/ngmlr.dir/ReadProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ReadProvider.cpp /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:153: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^ /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:108: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^~~~~~~~ +[ 64%] Building CXX object src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -MF CMakeFiles/ngmlr.dir/ReadProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ReadProvider.cpp [ 68%] Building CXX object src/CMakeFiles/ngmlr.dir/SamParser.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SamParser.cpp.o -MF CMakeFiles/ngmlr.dir/SamParser.cpp.o.d -o CMakeFiles/ngmlr.dir/SamParser.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SamParser.cpp -[ 72%] Building CXX object src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -MF CMakeFiles/ngmlr.dir/SAMWriter.cpp.o.d -o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SAMWriter.cpp -[ 76%] Building CXX object src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -MF CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp -[ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -[ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ScoreBuffer.cpp -[ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -MF CMakeFiles/ngmlr.dir/StrippedSW.cpp.o.d -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/StrippedSW.cpp /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’: /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:41: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, @@ -690,15 +723,25 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +[ 72%] Building CXX object src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -MF CMakeFiles/ngmlr.dir/SAMWriter.cpp.o.d -o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SAMWriter.cpp +[ 76%] Building CXX object src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -MF CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp +[ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp +[ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ScoreBuffer.cpp +[ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -MF CMakeFiles/ngmlr.dir/StrippedSW.cpp.o.d -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/StrippedSW.cpp [ 92%] Building CXX object src/CMakeFiles/ngmlr.dir/unix.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix.cpp.o -MF CMakeFiles/ngmlr.dir/unix.cpp.o.d -o CMakeFiles/ngmlr.dir/unix.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp -[ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o -MF CMakeFiles/ngmlr.dir/unix_threads.cpp.o.d -o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix_threads.cpp /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 17 | throw "Elements left in buffer!"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: note: in C++11 destructors default to ‘noexcept’ +[ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o -MF CMakeFiles/ngmlr.dir/unix_threads.cpp.o.d -o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix_threads.cpp [100%] Linking CXX executable /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngmlr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o CMakeFiles/ngmlr.dir/ArgParser.cpp.o CMakeFiles/ngmlr.dir/CS.cpp.o CMakeFiles/ngmlr.dir/CSstatic.cpp.o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o CMakeFiles/ngmlr.dir/Logging.cpp.o CMakeFiles/ngmlr.dir/MappedRead.cpp.o CMakeFiles/ngmlr.dir/main.cpp.o CMakeFiles/ngmlr.dir/NGM.cpp.o CMakeFiles/ngmlr.dir/NGMTask.cpp.o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o CMakeFiles/ngmlr.dir/SamParser.cpp.o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o CMakeFiles/ngmlr.dir/unix.cpp.o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -o /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr -lz -lssw @@ -712,7 +755,7 @@ dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/ngmlr/ -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/ngmlr-0.2.7\+git20210816.a2a31fb\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/ngmlr-0.2.7\+git20210816.a2a31fb\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg -B/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -743,8 +786,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_amd64.deb'. dpkg-deb: building package 'ngmlr-dbgsym' in '../ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_amd64.deb'. +dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -752,12 +795,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1907717/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1907717/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2152435 and its subdirectories -I: Current time: Mon May 20 05:47:25 -12 2024 -I: pbuilder-time-stamp: 1716227245 +I: removing directory /srv/workspace/pbuilder/1907717 and its subdirectories +I: Current time: Wed Apr 19 01:25:07 +14 2023 +I: pbuilder-time-stamp: 1681817107