Diff of the two buildlogs: -- --- b1/build.log 2023-04-18 10:40:45.904717559 +0000 +++ b2/build.log 2023-04-18 10:42:48.119298473 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon May 20 05:02:19 -12 2024 -I: pbuilder-time-stamp: 1716224539 +I: Current time: Wed Apr 19 00:40:47 +14 2023 +I: pbuilder-time-stamp: 1681814447 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./libgo-perl_0.15.orig.tar.gz] I: copying [./libgo-perl_0.15-9.debian.tar.xz] I: Extracting source -gpgv: Signature made Sat Jan 9 03:39:52 2021 -12 +gpgv: Signature made Sun Jan 10 05:39:52 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -34,135 +34,167 @@ dpkg-source: info: applying spelling2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1721234/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1350761/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 19 00:40 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1350761/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1350761/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='d5b76e2488264855acba6db352428938' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1721234' - PS1='# ' - PS2='> ' + INVOCATION_ID=52f1dc29809b4c928383fb8e141d5a10 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1350761 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.J88gOgHI/pbuilderrc_bu79 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.J88gOgHI/b1 --logfile b1/build.log libgo-perl_0.15-9.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.J88gOgHI/pbuilderrc_HwH8 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.J88gOgHI/b2 --logfile b2/build.log --extrapackages usrmerge libgo-perl_0.15-9.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 2023 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 2023 more - -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount - -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 2023 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1721234/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Feb 13 10:05 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more + -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount + -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Feb 13 10:05 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 06:31 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Apr 19 00:40 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 14520 Nov 3 06:31 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/1350761/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -287,7 +319,7 @@ Get: 73 http://deb.debian.org/debian bookworm/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 rename all 2.01-1 [21.0 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 xsltproc amd64 1.1.35-1 [126 kB] -Fetched 26.4 MB in 1s (39.9 MB/s) +Fetched 26.4 MB in 1s (43.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -618,8 +650,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgo-perl_0.15-9_source.changes +I: user script /srv/workspace/pbuilder/1350761/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/1350761/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libgo-perl_0.15-9_source.changes dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-9 dpkg-buildpackage: info: source distribution unstable @@ -641,111 +684,111 @@ Writing Makefile for GO Writing MYMETA.yml and MYMETA.json dh_auto_build - make -j16 + make -j15 make[1]: Entering directory '/build/libgo-perl-0.15' -cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm -cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm -cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm +cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm +cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm +cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm -cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm +cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm +cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm +cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm +cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm -cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm +cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm +cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm -cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm +cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm +cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm -cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm -cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm -cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm -cp GO/Basic.pm blib/lib/GO/Basic.pm -cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm -cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm -cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm -cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm -cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm -cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm +cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm -cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm -cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm -cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm -cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm -cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm -cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm -cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm -cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm -cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm -cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm -cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm -cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm -cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm -cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm +cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm +cp GO/Basic.pm blib/lib/GO/Basic.pm +cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm +cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm +cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm +cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm -cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm -cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm +cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm +cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm +cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm -cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm -cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm -cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm +cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm +cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm +cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm +cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm +cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm +cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm +cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm +cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm +cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm +cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm +cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm +cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm +cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm +cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm +cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm +cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm +cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm +cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm -cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm +cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm +cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm +cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm +cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm +cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm +cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm -cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm -cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm -cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm -cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm -cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm -cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm +cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm +cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm +cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm +cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm -cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm -cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm +cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm -cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm -cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm -cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm +cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm +cp GO/Parser.pm blib/lib/GO/Parser.pm +cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm +cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm +cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm +cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm +cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm -cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm -cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm -cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm -cp GO/Parser.pm blib/lib/GO/Parser.pm -cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm -cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm -cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm -cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm -cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm -cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm -cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm -cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm -cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm -cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl -cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm -cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl +cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm +cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm +cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl +cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl -cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm -cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl -cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl -cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl -cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl -cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm -cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl +cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl +cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm +cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl -cp go-perl.pod blib/lib/go-perl.pod -cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm -cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl -cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm -cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl -cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl cp GO/Utils.pm blib/lib/GO/Utils.pm +cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl +cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm +cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl +cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl +cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl +cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm +cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm +cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl +cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl +cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl +cp go-perl.pod blib/lib/go-perl.pod +cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl cp scripts/go-apply-xslt blib/script/go-apply-xslt "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl @@ -761,14 +804,14 @@ cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl cp scripts/go2chadoxml blib/script/go2chadoxml -cp scripts/go2error_report blib/script/go2error_report "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml +cp scripts/go2error_report blib/script/go2error_report "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report cp scripts/go2fmt.pl blib/script/go2fmt.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl cp scripts/go2godb_prestore blib/script/go2godb_prestore -cp scripts/go2obo blib/script/go2obo "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2godb_prestore +cp scripts/go2obo blib/script/go2obo "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo cp scripts/go2obo_html blib/script/go2obo_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_html @@ -803,14 +846,14 @@ Manifying 33 pod documents make[1]: Leaving directory '/build/libgo-perl-0.15' dh_auto_test - make -j16 test TEST_VERBOSE=1 + make -j15 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libgo-perl-0.15' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/t010build.t ............ 1..6 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:26 2024 -# Current time GMT: Mon May 20 17:03:26 2024 +# Current time local: Wed Apr 19 00:42:20 2023 +# Current time GMT: Tue Apr 18 10:42:20 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -822,8 +865,8 @@ t/t020paths.t ............ 1..7 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:26 2024 -# Current time GMT: Mon May 20 17:03:26 2024 +# Current time local: Wed Apr 19 00:42:21 2023 +# Current time GMT: Tue Apr 18 10:42:21 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -836,8 +879,8 @@ t/t030detecterror.t ...... 1..4 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:26 2024 -# Current time GMT: Mon May 20 17:03:26 2024 +# Current time local: Wed Apr 19 00:42:21 2023 +# Current time GMT: Tue Apr 18 10:42:21 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -879,8 +922,8 @@ t/t050oboformat.t ........ 1..6 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:26 2024 -# Current time GMT: Mon May 20 17:03:26 2024 +# Current time local: Wed Apr 19 00:42:21 2023 +# Current time GMT: Tue Apr 18 10:42:21 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -889,224 +932,224 @@ ROOT: molecular_function ok 3 ok 4 -EDGE|GO:0003696|GO:0003677|is_a -EDGE|GO:0003834|GO:0003824|is_a -EDGE|GO:0003703|GO:0003702|is_a -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0003678|GO:0003677|is_a -EDGE|GO:0003678|GO:0004386|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a -EDGE|GO:0008159|GO:0003711|is_a +EDGE|GO:0005626|GO:0000267|is_a +EDGE|GO:0005624|GO:0000267|is_a +EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0008148|GO:0003711|is_a -EDGE|GO:0003711|GO:0003700|is_a -EDGE|GO:0004844|GO:0003686|is_a -EDGE|GO:0003907|GO:0003686|is_a -EDGE|GO:0008263|GO:0003686|is_a -EDGE|GO:0003686|GO:0003824|is_a -EDGE|GO:0003686|GO:0003685|is_a -EDGE|GO:0000299|GO:0005624|is_a -EDGE|GO:0003681|GO:0003677|is_a -EDGE|GO:0003716|GO:0003715|is_a -EDGE|GO:0003691|GO:0003690|is_a -EDGE|GO:0003691|GO:0003720|is_a -EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0008301|GO:0003677|is_a -EDGE|GO:0008416|GO:0003824|is_a -EDGE|GO:0003684|GO:0003677|is_a -EDGE|GO:0000133|GO:0005935|part_of -EDGE|GO:0000142|GO:0005935|part_of -EDGE|GO:0005935|GO:0000134|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0000299|GO:0005624|is_a +EDGE|GO:0005624|GO:0000267|is_a +EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0005935|GO:0005933|part_of +EDGE|GO:0005934|GO:0005933|part_of +EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0003716|GO:0003715|is_a -EDGE|GO:0003718|GO:0003715|is_a -EDGE|GO:0003717|GO:0003715|is_a +EDGE|GO:0003705|GO:0003702|is_a +EDGE|GO:0003710|GO:0003700|is_a +EDGE|GO:0003702|GO:0003700|is_a +EDGE|GO:0003709|GO:0003700|is_a +EDGE|GO:0003711|GO:0003700|is_a +EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0003715|GO:0003700|is_a -EDGE|GO:0000144|GO:0000142|part_of -EDGE|GO:0000144|GO:0030481|is_a +EDGE|GO:0003700|GO:0003677|is_a +EDGE|GO:0008464|GO:0003824|is_a +EDGE|GO:0003684|GO:0003677|is_a +EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0003694|GO:0003677|is_a +EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0003833|GO:0003824|is_a +EDGE|GO:0003826|GO:0003824|is_a +EDGE|GO:0008456|GO:0003824|is_a +EDGE|GO:0003906|GO:0003824|is_a +EDGE|GO:0003904|GO:0003824|is_a +EDGE|GO:0008336|GO:0003824|is_a +EDGE|GO:0003825|GO:0003824|is_a +EDGE|GO:0003908|GO:0003824|is_a +EDGE|GO:0003905|GO:0003824|is_a +EDGE|GO:0008461|GO:0003824|is_a +EDGE|GO:0003834|GO:0003824|is_a +EDGE|GO:0008578|GO:0003824|is_a +EDGE|GO:0008111|GO:0003824|is_a +EDGE|GO:0008464|GO:0003824|is_a +EDGE|GO:0003840|GO:0003824|is_a +EDGE|GO:0003839|GO:0003824|is_a +EDGE|GO:0003832|GO:0003824|is_a +EDGE|GO:0003686|GO:0003824|is_a +EDGE|GO:0008488|GO:0003824|is_a +EDGE|GO:0008416|GO:0003824|is_a +EDGE|GO:0003837|GO:0003824|is_a +EDGE|GO:0003824|GO:0003674|is_a +EDGE|GO:0000144|GO:0000142|part_of +EDGE|GO:0000142|GO:0005935|part_of +EDGE|GO:0000142|GO:0030480|is_a +EDGE|GO:0003688|GO:0003687|is_a +EDGE|GO:0003689|GO:0003687|is_a +EDGE|GO:0003687|GO:0003677|is_a +EDGE|GO:0004844|GO:0008578|is_a +EDGE|GO:0004844|GO:0003686|is_a +EDGE|GO:0003697|GO:0003677|is_a +EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0008111|GO:0003824|is_a +EDGE|GO:0003707|GO:0003706|is_a +EDGE|GO:0003707|GO:0004879|is_a +EDGE|GO:0003677|GO:0003676|is_a +EDGE|GO:0003676|GO:0003674|is_a +EDGE|GO:0003839|GO:0003824|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0000217|GO:0003677|is_a +EDGE|GO:0003704|GO:0003702|is_a +EDGE|GO:0003906|GO:0003824|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0001662|GO:0042596|is_a +EDGE|GO:0008263|GO:0008578|is_a +EDGE|GO:0008263|GO:0003686|is_a +EDGE|GO:0003708|GO:0004879|is_a +EDGE|GO:0003708|GO:0003706|is_a +EDGE|GO:0003840|GO:0003824|is_a +EDGE|GO:0003691|GO:0003690|is_a +EDGE|GO:0000150|GO:0003690|is_a +EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0003907|GO:0008578|is_a -EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0004844|GO:0008578|is_a +EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0008578|GO:0003824|is_a -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0003695|GO:0003677|is_a +EDGE|GO:0003832|GO:0003824|is_a +EDGE|GO:0008148|GO:0003711|is_a +EDGE|GO:0008159|GO:0003711|is_a +EDGE|GO:0003711|GO:0003700|is_a +EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0003908|GO:0008172|is_a -EDGE|GO:0003908|GO:0003824|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0003685|GO:0003677|is_a -EDGE|GO:0000133|GO:0005934|part_of -EDGE|GO:0005934|GO:0000134|is_a -EDGE|GO:0005934|GO:0005933|part_of +EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003720|GO:0003677|is_a -EDGE|GO:0003707|GO:0003706|is_a -EDGE|GO:0003707|GO:0004879|is_a +EDGE|GO:0008456|GO:0003824|is_a +EDGE|GO:0003825|GO:0003824|is_a +EDGE|GO:0003693|GO:0003677|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0000217|GO:0003677|is_a -EDGE|GO:0003695|GO:0003677|is_a -EDGE|GO:0003688|GO:0003687|is_a -EDGE|GO:0003689|GO:0003687|is_a -EDGE|GO:0003687|GO:0003677|is_a -EDGE|GO:0008336|GO:0003824|is_a +EDGE|GO:0008263|GO:0003686|is_a +EDGE|GO:0003907|GO:0003686|is_a +EDGE|GO:0004844|GO:0003686|is_a +EDGE|GO:0003686|GO:0003824|is_a +EDGE|GO:0003686|GO:0003685|is_a +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0003705|GO:0003702|is_a -EDGE|GO:0003697|GO:0003677|is_a -EDGE|GO:0005623|GO:0005575|is_a -EDGE|GO:0008159|GO:0003711|is_a -EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0003704|GO:0003702|is_a -EDGE|GO:0003717|GO:0003715|is_a -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0008488|GO:0003824|is_a -EDGE|GO:0003837|GO:0003824|is_a -EDGE|GO:0005934|GO:0005933|part_of -EDGE|GO:0005935|GO:0005933|part_of -EDGE|GO:0005933|GO:0005623|part_of -EDGE|GO:0000150|GO:0003690|is_a -EDGE|GO:0003701|GO:0003700|is_a -EDGE|GO:0003840|GO:0003824|is_a -EDGE|GO:0003708|GO:0003706|is_a -EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0003706|GO:0003702|is_a -EDGE|GO:0003693|GO:0003677|is_a +EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0003683|GO:0003682|is_a +EDGE|GO:0000150|GO:0003690|is_a +EDGE|GO:0003701|GO:0003700|is_a +EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0003826|GO:0003824|is_a -EDGE|GO:0008148|GO:0003711|is_a -EDGE|GO:0003721|GO:0003720|is_a -EDGE|GO:0003721|GO:0003964|is_a +EDGE|GO:0043025|GO:0005623|part_of +EDGE|GO:0008336|GO:0003824|is_a +EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0008534|GO:0008578|is_a -EDGE|GO:0000182|GO:0003677|is_a -EDGE|GO:0008111|GO:0003824|is_a -EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0043025|GO:0005623|part_of +EDGE|GO:0005933|GO:0005623|part_of +EDGE|GO:0000267|GO:0005623|part_of +EDGE|GO:0005623|GO:0005575|is_a +EDGE|GO:0003717|GO:0003715|is_a +EDGE|GO:0005626|GO:0000267|is_a +EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0005626|GO:0000267|is_a -EDGE|GO:0003705|GO:0003702|is_a -EDGE|GO:0003703|GO:0003702|is_a -EDGE|GO:0003704|GO:0003702|is_a +EDGE|GO:0000182|GO:0003677|is_a +EDGE|GO:0003837|GO:0003824|is_a +EDGE|GO:0003718|GO:0003715|is_a +EDGE|GO:0000133|GO:0005934|part_of +EDGE|GO:0005934|GO:0005933|part_of +EDGE|GO:0005934|GO:0000134|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0003834|GO:0003824|is_a +EDGE|GO:0003905|GO:0003824|is_a +EDGE|GO:0005623|GO:0005575|is_a +EDGE|GO:0008416|GO:0003824|is_a +EDGE|GO:0000133|GO:0005938|part_of +EDGE|GO:0000133|GO:0005935|part_of +EDGE|GO:0000133|GO:0005934|part_of +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0008159|GO:0003711|is_a +EDGE|GO:0003689|GO:0003687|is_a +EDGE|GO:0003721|GO:0003720|is_a +EDGE|GO:0003721|GO:0003964|is_a +EDGE|GO:0003907|GO:0008578|is_a +EDGE|GO:0003907|GO:0003686|is_a +EDGE|GO:0003676|GO:0003674|is_a +EDGE|GO:0003824|GO:0003674|is_a +EDGE|GO:0000144|GO:0000142|part_of +EDGE|GO:0000144|GO:0030481|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0003678|GO:0003677|is_a +EDGE|GO:0003678|GO:0004386|is_a +EDGE|GO:0003691|GO:0003690|is_a +EDGE|GO:0003691|GO:0003720|is_a +EDGE|GO:0003707|GO:0003706|is_a +EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0003706|GO:0003702|is_a -EDGE|GO:0003702|GO:0003700|is_a -EDGE|GO:0005624|GO:0000267|is_a -EDGE|GO:0005626|GO:0000267|is_a -EDGE|GO:0000267|GO:0005623|part_of -EDGE|GO:0003685|GO:0003677|is_a -EDGE|GO:0003681|GO:0003677|is_a -EDGE|GO:0003693|GO:0003677|is_a -EDGE|GO:0000217|GO:0003677|is_a -EDGE|GO:0008301|GO:0003677|is_a -EDGE|GO:0003720|GO:0003677|is_a -EDGE|GO:0003695|GO:0003677|is_a +EDGE|GO:0003904|GO:0003913|is_a +EDGE|GO:0003904|GO:0003824|is_a +EDGE|GO:0003692|GO:0003677|is_a +EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0003700|GO:0003677|is_a -EDGE|GO:0003687|GO:0003677|is_a +EDGE|GO:0003697|GO:0003677|is_a +EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0003692|GO:0003677|is_a +EDGE|GO:0003687|GO:0003677|is_a +EDGE|GO:0003720|GO:0003677|is_a +EDGE|GO:0000217|GO:0003677|is_a +EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0003696|GO:0003677|is_a -EDGE|GO:0003684|GO:0003677|is_a +EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0003678|GO:0003677|is_a +EDGE|GO:0000182|GO:0003677|is_a EDGE|GO:0003680|GO:0003677|is_a +EDGE|GO:0008301|GO:0003677|is_a +EDGE|GO:0003695|GO:0003677|is_a +EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0003690|GO:0003677|is_a -EDGE|GO:0003697|GO:0003677|is_a -EDGE|GO:0003682|GO:0003677|is_a -EDGE|GO:0000182|GO:0003677|is_a -EDGE|GO:0003694|GO:0003677|is_a +EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0003677|GO:0003676|is_a -EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0000133|GO:0005935|part_of -EDGE|GO:0000133|GO:0005938|part_of -EDGE|GO:0043025|GO:0005623|part_of -EDGE|GO:0008464|GO:0003824|is_a -EDGE|GO:0003708|GO:0004879|is_a -EDGE|GO:0003708|GO:0003706|is_a -EDGE|GO:0003680|GO:0003677|is_a -EDGE|GO:0008461|GO:0003824|is_a -EDGE|GO:0000150|GO:0003690|is_a -EDGE|GO:0003691|GO:0003690|is_a -EDGE|GO:0003690|GO:0003677|is_a -EDGE|GO:0003833|GO:0003824|is_a -EDGE|GO:0008456|GO:0003824|is_a -EDGE|GO:0003905|GO:0003824|is_a -EDGE|GO:0003825|GO:0003824|is_a -EDGE|GO:0008464|GO:0003824|is_a -EDGE|GO:0008416|GO:0003824|is_a +EDGE|GO:0000142|GO:0005935|part_of +EDGE|GO:0005935|GO:0000134|is_a +EDGE|GO:0005935|GO:0005933|part_of +EDGE|GO:0003908|GO:0008172|is_a EDGE|GO:0003908|GO:0003824|is_a -EDGE|GO:0008461|GO:0003824|is_a -EDGE|GO:0003839|GO:0003824|is_a -EDGE|GO:0008336|GO:0003824|is_a -EDGE|GO:0008578|GO:0003824|is_a -EDGE|GO:0003686|GO:0003824|is_a -EDGE|GO:0003840|GO:0003824|is_a -EDGE|GO:0003832|GO:0003824|is_a -EDGE|GO:0008111|GO:0003824|is_a -EDGE|GO:0003904|GO:0003824|is_a -EDGE|GO:0003834|GO:0003824|is_a -EDGE|GO:0003826|GO:0003824|is_a -EDGE|GO:0008488|GO:0003824|is_a -EDGE|GO:0003837|GO:0003824|is_a -EDGE|GO:0003906|GO:0003824|is_a -EDGE|GO:0003824|GO:0003674|is_a -EDGE|GO:0003907|GO:0008578|is_a -EDGE|GO:0003907|GO:0003686|is_a -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0003709|GO:0003700|is_a -EDGE|GO:0004844|GO:0008578|is_a -EDGE|GO:0004844|GO:0003686|is_a -EDGE|GO:0000299|GO:0005624|is_a -EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0003710|GO:0003700|is_a -EDGE|GO:0003825|GO:0003824|is_a -EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0003681|GO:0003677|is_a +EDGE|GO:0008461|GO:0003824|is_a +EDGE|GO:0003703|GO:0003702|is_a +EDGE|GO:0003716|GO:0003715|is_a +EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0003718|GO:0003715|is_a -EDGE|GO:0003689|GO:0003687|is_a -EDGE|GO:0003904|GO:0003824|is_a -EDGE|GO:0003904|GO:0003913|is_a -EDGE|GO:0003832|GO:0003824|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0001662|GO:0042596|is_a -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0003677|GO:0003676|is_a -EDGE|GO:0003676|GO:0003674|is_a -EDGE|GO:0003688|GO:0003687|is_a -EDGE|GO:0003905|GO:0003824|is_a -EDGE|GO:0003702|GO:0003700|is_a -EDGE|GO:0003701|GO:0003700|is_a -EDGE|GO:0003710|GO:0003700|is_a -EDGE|GO:0003711|GO:0003700|is_a -EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0003715|GO:0003700|is_a -EDGE|GO:0003700|GO:0003677|is_a -EDGE|GO:0005933|GO:0005623|part_of -EDGE|GO:0043025|GO:0005623|part_of -EDGE|GO:0000267|GO:0005623|part_of -EDGE|GO:0005623|GO:0005575|is_a -EDGE|GO:0000144|GO:0000142|part_of -EDGE|GO:0000142|GO:0005935|part_of -EDGE|GO:0000142|GO:0030480|is_a -EDGE|GO:0003692|GO:0003677|is_a -EDGE|GO:0003906|GO:0003824|is_a -EDGE|GO:0048148|GO:0042220|is_a -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0003682|GO:0003677|is_a -EDGE|GO:0048149|GO:0045471|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0008263|GO:0003686|is_a -EDGE|GO:0008263|GO:0008578|is_a -EDGE|GO:0003824|GO:0003674|is_a -EDGE|GO:0003676|GO:0003674|is_a total parent rels:118 total (both ways):218 ok 5 @@ -1115,118 +1158,118 @@ t/t060oboformat2.t ....... 1..36 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:26 2024 -# Current time GMT: Mon May 20 17:03:26 2024 +# Current time local: Wed Apr 19 00:42:21 2023 +# Current time GMT: Tue Apr 18 10:42:21 2023 # Using Test.pm version 1.31 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 -ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase -ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: Part of +ROOT: 1-phosphatidylinositol-4-phosphate kinase +ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: root TERMS: 29 -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0035094|is_a -EDGE|GO:0035095|GO:0030534|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0008343|GO:0030534|is_a DEFXREFS:GO:curators -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a -EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0009414|is_a EDGE|GO:0042630|GO:0007610|is_a -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a -DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0048150|GO:0045472|is_a -DEFXREFS:GO:jic -EDGE|GO:0042048|GO:0007635|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0008343|GO:0030534|is_a DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a -DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007636|GO:0007635|is_a -DEFXREFS:GO:ai -EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008344|GO:0007626|is_a -SYNS:FAKE:0001|fake synonym|class I PI3K -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of +SYNS:drinking|eating +DEFXREFS:GO:mah +EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0048266|GO:0048265|is_a +EDGE|GO:0007610|GO:0008150|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a +EDGE|GO:0048148|GO:0030534|is_a DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0042596|is_a -EDGE|GO:0001662|GO:0007610|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0048265|is_a +EDGE|GO:0048266|GO:0007610|is_a +DEFXREFS:GO:jic +EDGE|GO:0042048|GO:0007635|is_a +SYNS:class I PI3K|fake synonym|FAKE:0001 +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 +DEFXREFS:GO:curators +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0007635|GO:0007610|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042595|GO:0042594|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0048150|GO:0030534|is_a +DEFXREFS:GO:ai +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0008150|root|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0001662|GO:0042596|is_a +DEFXREFS:GO:jic +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007636|GO:0007630|is_a +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0035095|GO:0035094|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1250,112 +1293,112 @@ ok 13 Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 -ROOT: root ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase -ROOT: 1-phosphatidylinositol-4-phosphate kinase +ROOT: root ROOT: Part of +ROOT: 1-phosphatidylinositol-4-phosphate kinase TERMS: 29 -DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048148|GO:0042220|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0001662|GO:0042596|is_a -DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042595|GO:0042594|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0045471|is_a -EDGE|GO:0048149|GO:0030534|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007636|GO:0007630|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0001662|GO:0042596|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0008150|root|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab +DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0048150|GO:0045472|is_a +DEFXREFS:GO:ai +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0035094|is_a -EDGE|GO:0035095|GO:0030534|is_a -DEFXREFS:GO:curators -EDGE|GO:0042048|GO:0007635|is_a -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0008343|GO:0007631|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0009414|is_a EDGE|GO:0042630|GO:0007610|is_a -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a -DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a +SYNS:fake synonym|FAKE:0001|class I PI3K +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 +DEFXREFS:GO:curators EDGE|GO:0007636|GO:0007635|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a -DEFXREFS:GO:jic +EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:jic +EDGE|GO:0042048|GO:0007635|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0048265|is_a +EDGE|GO:0048266|GO:0007610|is_a +DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0048150|GO:0045472|is_a -SYNS:class I PI3K|fake synonym|FAKE:0001 -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:GO:ai -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a +DEFXREFS:GO:jic +EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0048148|GO:0030534|is_a +SYNS:drinking|eating +DEFXREFS:GO:mah +EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0048266|GO:0048265|is_a +EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1381,59 +1424,97 @@ ok 26 ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: Part of -ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: root +ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase TERMS: 29 -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of -DEFXREFS:GO:ai -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a -EDGE|GO:0008344|GO:0030534|is_a -SYNS:FAKE:0001|fake synonym|class I PI3K -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a +SYNS:drinking|eating +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0048265|is_a -EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:GO:jic +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0042630|GO:0009414|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0048266|GO:0048265|is_a +DEFXREFS:GO:mah|ISBN:0877797099 +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:curators +EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0035095|GO:0035094|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008343|GO:0007631|is_a +SYNS:class I PI3K|FAKE:0001|fake synonym +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0008343|GO:0030534|is_a +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0009414|is_a +EDGE|GO:0042630|GO:0007610|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a +DEFXREFS:GO:ai +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0008150|root|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0048149|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0042596|is_a +EDGE|GO:0001662|GO:0007610|is_a +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0035094|is_a +EDGE|GO:0035095|GO:0030534|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a @@ -1442,49 +1523,11 @@ COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048149|GO:0045471|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0042596|is_a -EDGE|GO:0001662|GO:0007610|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a -DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0042595|GO:0042594|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1508,8 +1551,8 @@ t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:27 2024 -# Current time GMT: Mon May 20 17:03:27 2024 +# Current time local: Wed Apr 19 00:42:22 2023 +# Current time GMT: Tue Apr 18 10:42:22 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1901,8 +1944,8 @@ t/t080gofmt2.t ........... 1..3 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:27 2024 -# Current time GMT: Mon May 20 17:03:27 2024 +# Current time local: Wed Apr 19 00:42:23 2023 +# Current time GMT: Tue Apr 18 10:42:23 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1956,8 +1999,8 @@ t/t100roundtrip.t ........ 1..2 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:27 2024 -# Current time GMT: Mon May 20 17:03:27 2024 +# Current time local: Wed Apr 19 00:42:23 2023 +# Current time GMT: Tue Apr 18 10:42:23 2023 # Using Test.pm version 1.31 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml @@ -1985,8 +2028,8 @@ t/t110basic.t ............ 1..4 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:28 2024 -# Current time GMT: Mon May 20 17:03:28 2024 +# Current time local: Wed Apr 19 00:42:24 2023 +# Current time GMT: Tue Apr 18 10:42:24 2023 # Using Test.pm version 1.31 GO:0016604 GO:0016604 @@ -2004,8 +2047,8 @@ t/t130relations.t ........ 1..7 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:28 2024 -# Current time GMT: Mon May 20 17:03:28 2024 +# Current time local: Wed Apr 19 00:42:25 2023 +# Current time GMT: Tue Apr 18 10:42:25 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2019,8 +2062,8 @@ t/t140subgraph.t ......... 1..1 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:29 2024 -# Current time GMT: Mon May 20 17:03:29 2024 +# Current time local: Wed Apr 19 00:42:25 2023 +# Current time GMT: Tue Apr 18 10:42:25 2023 # Using Test.pm version 1.31 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 @@ -2032,8 +2075,8 @@ t/t150xref.t ............. 1..2 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:29 2024 -# Current time GMT: Mon May 20 17:03:29 2024 +# Current time local: Wed Apr 19 00:42:26 2023 +# Current time GMT: Tue Apr 18 10:42:26 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2041,8 +2084,8 @@ t/t160logicaldef.t ....... 1..5 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:29 2024 -# Current time GMT: Mon May 20 17:03:29 2024 +# Current time local: Wed Apr 19 00:42:26 2023 +# Current time GMT: Tue Apr 18 10:42:26 2023 # Using Test.pm version 1.31 ok 1 ns: biological_process @@ -2058,8 +2101,8 @@ t/t170chadoxml.t ......... 1..9 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:30 2024 -# Current time GMT: Mon May 20 17:03:30 2024 +# Current time local: Wed Apr 19 00:42:27 2023 +# Current time GMT: Tue Apr 18 10:42:27 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2074,8 +2117,8 @@ t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:30 2024 -# Current time GMT: Mon May 20 17:03:30 2024 +# Current time local: Wed Apr 19 00:42:27 2023 +# Current time GMT: Tue Apr 18 10:42:27 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2090,8 +2133,8 @@ t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:30 2024 -# Current time GMT: Mon May 20 17:03:30 2024 +# Current time local: Wed Apr 19 00:42:28 2023 +# Current time GMT: Tue Apr 18 10:42:28 2023 # Using Test.pm version 1.31 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 @@ -2103,8 +2146,8 @@ t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:31 2024 -# Current time GMT: Mon May 20 17:03:31 2024 +# Current time local: Wed Apr 19 00:42:29 2023 +# Current time GMT: Tue Apr 18 10:42:29 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2112,8 +2155,8 @@ t/t210cache.t ............ 1..6 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:31 2024 -# Current time GMT: Mon May 20 17:03:31 2024 +# Current time local: Wed Apr 19 00:42:29 2023 +# Current time GMT: Tue Apr 18 10:42:29 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2125,8 +2168,8 @@ t/t220xref_esc.t ......... 1..6 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:31 2024 -# Current time GMT: Mon May 20 17:03:31 2024 +# Current time local: Wed Apr 19 00:42:29 2023 +# Current time GMT: Tue Apr 18 10:42:29 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2140,8 +2183,8 @@ t/t230term_expression.t .. 1..1 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:31 2024 -# Current time GMT: Mon May 20 17:03:31 2024 +# Current time local: Wed Apr 19 00:42:30 2023 +# Current time GMT: Tue Apr 18 10:42:30 2023 # Using Test.pm version 1.31 @@ -2236,8 +2279,8 @@ t/t240ga2obj.t ........... 1..3 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:32 2024 -# Current time GMT: Mon May 20 17:03:32 2024 +# Current time local: Wed Apr 19 00:42:30 2023 +# Current time GMT: Tue Apr 18 10:42:30 2023 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2246,8 +2289,8 @@ t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:32 2024 -# Current time GMT: Mon May 20 17:03:32 2024 +# Current time local: Wed Apr 19 00:42:30 2023 +# Current time GMT: Tue Apr 18 10:42:30 2023 # Using Test.pm version 1.31 @@ -2299,8 +2342,8 @@ t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:32 2024 -# Current time GMT: Mon May 20 17:03:32 2024 +# Current time local: Wed Apr 19 00:42:31 2023 +# Current time GMT: Tue Apr 18 10:42:31 2023 # Using Test.pm version 1.31 '(owl:TransitiveProperty (@ @@ -2348,8 +2391,8 @@ t/t290disjoint.t ......... 1..2 # Running under perl version 5.036000 for linux -# Current time local: Mon May 20 05:03:33 2024 -# Current time GMT: Mon May 20 17:03:33 2024 +# Current time local: Wed Apr 19 00:42:31 2023 +# Current time GMT: Tue Apr 18 10:42:31 2023 # Using Test.pm version 1.31 ok 1 GO:0009987 @@ -2357,120 +2400,120 @@ ok 2 ok All tests successful. -Files=24, Tests=140, 7 wallclock secs ( 0.15 usr 0.09 sys + 5.93 cusr 0.64 csys = 6.81 CPU) +Files=24, Tests=140, 11 wallclock secs ( 0.20 usr 0.04 sys + 6.42 cusr 0.48 csys = 7.14 CPU) Result: PASS make[1]: Leaving directory '/build/libgo-perl-0.15' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libgo-perl/ - make -j16 install DESTDIR=/build/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr + make -j15 install DESTDIR=/build/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libgo-perl-0.15' Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/go-perl.pod Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Basic.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p @@ -2552,32 +2595,32 @@ Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl make[1]: Leaving directory '/build/libgo-perl-0.15' debian/rules override_dh_install make[1]: Entering directory '/build/libgo-perl-0.15' @@ -2606,12 +2649,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1350761/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1350761/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1721234 and its subdirectories -I: Current time: Mon May 20 05:03:45 -12 2024 -I: pbuilder-time-stamp: 1716224625 +I: removing directory /srv/workspace/pbuilder/1350761 and its subdirectories +I: Current time: Wed Apr 19 00:42:47 +14 2023 +I: pbuilder-time-stamp: 1681814567