Diff of the two buildlogs: -- --- b1/build.log 2023-05-01 01:15:52.851139638 +0000 +++ b2/build.log 2023-05-01 01:26:57.421933320 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Apr 30 12:42:19 -12 2023 -I: pbuilder-time-stamp: 1682901739 +I: Current time: Sun Jun 2 21:38:57 +14 2024 +I: pbuilder-time-stamp: 1717313937 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./gemmi_0.5.7+ds.orig.tar.xz] I: copying [./gemmi_0.5.7+ds-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Oct 3 20:32:52 2022 -12 +gpgv: Signature made Tue Oct 4 22:32:52 2022 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key @@ -30,135 +30,167 @@ dpkg-source: info: applying tao-pegtl-3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1475406/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3786332/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 2 21:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3786332/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3786332/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='c004ea4298774842b79b31119818f4c4' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1475406' - PS1='# ' - PS2='> ' + INVOCATION_ID=a65ed9830fb84225b3bada129b8013b1 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3786332 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sZFbsGhD/pbuilderrc_7dGG --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sZFbsGhD/b1 --logfile b1/build.log gemmi_0.5.7+ds-2.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sZFbsGhD/pbuilderrc_iXWa --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sZFbsGhD/b2 --logfile b2/build.log --extrapackages usrmerge gemmi_0.5.7+ds-2.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos1-amd64 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more - -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount - -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1475406/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 2023 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 2023 more + -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount + -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Jun 2 21:39 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 2023 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/3786332/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -307,7 +339,7 @@ Get: 89 http://deb.debian.org/debian bookworm/main amd64 python3-pybind11 all 2.10.3-1 [199 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] -Fetched 58.2 MB in 2s (23.7 MB/s) +Fetched 58.2 MB in 1s (73.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -689,8 +721,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/gemmi-0.5.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gemmi_0.5.7+ds-2_source.changes +I: user script /srv/workspace/pbuilder/3786332/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/3786332/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/gemmi-0.5.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gemmi_0.5.7+ds-2_source.changes dpkg-buildpackage: info: source package gemmi dpkg-buildpackage: info: source version 0.5.7+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -750,22 +793,22 @@ -- Build files have been written to: /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/gemmi-0.5.7+ds' dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/gemmi-0.5.7+ds -B/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/input.dir/build.make CMakeFiles/input.dir/depend +make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/depend make[3]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/input.dir/DependInfo.cmake --color= -make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/depend make[3]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/options.dir/DependInfo.cmake --color= make -f CMakeFiles/output.dir/build.make CMakeFiles/output.dir/depend -make -f CMakeFiles/mapcoef.dir/build.make CMakeFiles/mapcoef.dir/depend make[3]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/output.dir/DependInfo.cmake --color= +make -f CMakeFiles/mapcoef.dir/build.make CMakeFiles/mapcoef.dir/depend make[3]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/mapcoef.dir/DependInfo.cmake --color= make -f CMakeFiles/py.dir/build.make CMakeFiles/py.dir/depend @@ -774,16 +817,16 @@ make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/build make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/input.dir/build.make CMakeFiles/input.dir/build make[3]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/output.dir/build.make CMakeFiles/output.dir/build -make[3]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/mapcoef.dir/build.make CMakeFiles/mapcoef.dir/build make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/py.dir/build.make CMakeFiles/py.dir/build make[3]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' [ 0%] Building CXX object CMakeFiles/options.dir/src/options.cpp.o @@ -792,27 +835,27 @@ [ 4%] Building CXX object CMakeFiles/output.dir/src/output.cpp.o /usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/input.dir/src/input.cpp.o -MF CMakeFiles/input.dir/src/input.cpp.o.d -o CMakeFiles/input.dir/src/input.cpp.o -c /build/gemmi-0.5.7+ds/src/input.cpp /usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/output.dir/src/output.cpp.o -MF CMakeFiles/output.dir/src/output.cpp.o.d -o CMakeFiles/output.dir/src/output.cpp.o -c /build/gemmi-0.5.7+ds/src/output.cpp +[ 4%] Building CXX object CMakeFiles/py.dir/python/mol.cpp.o [ 7%] Building CXX object CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o -/usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o -MF CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o.d -o CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o -c /build/gemmi-0.5.7+ds/src/mapcoef.cpp [ 9%] Building CXX object CMakeFiles/py.dir/python/gemmi.cpp.o -[ 9%] Building CXX object CMakeFiles/py.dir/python/mol.cpp.o +/usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o -MF CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o.d -o CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o -c /build/gemmi-0.5.7+ds/src/mapcoef.cpp /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/mol.cpp.o -MF CMakeFiles/py.dir/python/mol.cpp.o.d -o CMakeFiles/py.dir/python/mol.cpp.o -c /build/gemmi-0.5.7+ds/python/mol.cpp -[ 12%] Building CXX object CMakeFiles/py.dir/python/align.cpp.o -[ 12%] Building CXX object CMakeFiles/py.dir/python/chemcomp.cpp.o -[ 14%] Building CXX object CMakeFiles/py.dir/python/ccp4.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/gemmi.cpp.o -MF CMakeFiles/py.dir/python/gemmi.cpp.o.d -o CMakeFiles/py.dir/python/gemmi.cpp.o -c /build/gemmi-0.5.7+ds/python/gemmi.cpp -/usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/align.cpp.o -MF CMakeFiles/py.dir/python/align.cpp.o.d -o CMakeFiles/py.dir/python/align.cpp.o -c /build/gemmi-0.5.7+ds/python/align.cpp -/usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/chemcomp.cpp.o -MF CMakeFiles/py.dir/python/chemcomp.cpp.o.d -o CMakeFiles/py.dir/python/chemcomp.cpp.o -c /build/gemmi-0.5.7+ds/python/chemcomp.cpp -/usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/ccp4.cpp.o -MF CMakeFiles/py.dir/python/ccp4.cpp.o.d -o CMakeFiles/py.dir/python/ccp4.cpp.o -c /build/gemmi-0.5.7+ds/python/ccp4.cpp In file included from /build/gemmi-0.5.7+ds/src/output.cpp:6: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ -[ 14%] Building CXX object CMakeFiles/py.dir/python/elem.cpp.o -[ 17%] Building CXX object CMakeFiles/py.dir/python/custom.cpp.o -[ 19%] Building CXX object CMakeFiles/py.dir/python/cif.cpp.o +[ 12%] Building CXX object CMakeFiles/py.dir/python/align.cpp.o +/usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/align.cpp.o -MF CMakeFiles/py.dir/python/align.cpp.o.d -o CMakeFiles/py.dir/python/align.cpp.o -c /build/gemmi-0.5.7+ds/python/align.cpp +[ 14%] Building CXX object CMakeFiles/py.dir/python/ccp4.cpp.o +/usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/ccp4.cpp.o -MF CMakeFiles/py.dir/python/ccp4.cpp.o.d -o CMakeFiles/py.dir/python/ccp4.cpp.o -c /build/gemmi-0.5.7+ds/python/ccp4.cpp +[ 14%] Building CXX object CMakeFiles/py.dir/python/chemcomp.cpp.o +[ 17%] Building CXX object CMakeFiles/py.dir/python/cif.cpp.o +/usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/chemcomp.cpp.o -MF CMakeFiles/py.dir/python/chemcomp.cpp.o.d -o CMakeFiles/py.dir/python/chemcomp.cpp.o -c /build/gemmi-0.5.7+ds/python/chemcomp.cpp /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/cif.cpp.o -MF CMakeFiles/py.dir/python/cif.cpp.o.d -o CMakeFiles/py.dir/python/cif.cpp.o -c /build/gemmi-0.5.7+ds/python/cif.cpp +[ 19%] Building CXX object CMakeFiles/py.dir/python/custom.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/custom.cpp.o -MF CMakeFiles/py.dir/python/custom.cpp.o.d -o CMakeFiles/py.dir/python/custom.cpp.o -c /build/gemmi-0.5.7+ds/python/custom.cpp +[ 19%] Building CXX object CMakeFiles/py.dir/python/elem.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/elem.cpp.o -MF CMakeFiles/py.dir/python/elem.cpp.o.d -o CMakeFiles/py.dir/python/elem.cpp.o -c /build/gemmi-0.5.7+ds/python/elem.cpp [ 21%] Building CXX object CMakeFiles/py.dir/python/grid.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/grid.cpp.o -MF CMakeFiles/py.dir/python/grid.cpp.o.d -o CMakeFiles/py.dir/python/grid.cpp.o -c /build/gemmi-0.5.7+ds/python/grid.cpp @@ -820,18 +863,18 @@ /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -Wno-psabi -MD -MT CMakeFiles/py.dir/python/hkl.cpp.o -MF CMakeFiles/py.dir/python/hkl.cpp.o.d -o CMakeFiles/py.dir/python/hkl.cpp.o -c /build/gemmi-0.5.7+ds/python/hkl.cpp [ 26%] Building CXX object CMakeFiles/py.dir/python/meta.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/meta.cpp.o -MF CMakeFiles/py.dir/python/meta.cpp.o.d -o CMakeFiles/py.dir/python/meta.cpp.o -c /build/gemmi-0.5.7+ds/python/meta.cpp -In file included from /build/gemmi-0.5.7+ds/include/gemmi/to_chemcomp.hpp:10, - from /build/gemmi-0.5.7+ds/python/chemcomp.cpp:4: +[ 26%] Building CXX object CMakeFiles/py.dir/python/monlib.cpp.o +/usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/monlib.cpp.o -MF CMakeFiles/py.dir/python/monlib.cpp.o.d -o CMakeFiles/py.dir/python/monlib.cpp.o -c /build/gemmi-0.5.7+ds/python/monlib.cpp +In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, + from /build/gemmi-0.5.7+ds/python/mol.cpp:8: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ -In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, - from /build/gemmi-0.5.7+ds/python/mol.cpp:8: +In file included from /build/gemmi-0.5.7+ds/include/gemmi/to_chemcomp.hpp:10, + from /build/gemmi-0.5.7+ds/python/chemcomp.cpp:4: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ -[ 26%] Building CXX object CMakeFiles/py.dir/python/monlib.cpp.o -/usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/monlib.cpp.o -MF CMakeFiles/py.dir/python/monlib.cpp.o.d -o CMakeFiles/py.dir/python/monlib.cpp.o -c /build/gemmi-0.5.7+ds/python/monlib.cpp make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' [ 26%] Built target options [ 29%] Building CXX object CMakeFiles/py.dir/python/mtz.cpp.o @@ -853,8 +896,6 @@ /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/sf.cpp.o -MF CMakeFiles/py.dir/python/sf.cpp.o.d -o CMakeFiles/py.dir/python/sf.cpp.o -c /build/gemmi-0.5.7+ds/python/sf.cpp [ 39%] Building CXX object CMakeFiles/py.dir/python/sym.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/sym.cpp.o -MF CMakeFiles/py.dir/python/sym.cpp.o.d -o CMakeFiles/py.dir/python/sym.cpp.o -c /build/gemmi-0.5.7+ds/python/sym.cpp -make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -[ 39%] Built target output [ 41%] Building CXX object CMakeFiles/py.dir/python/topo.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/topo.cpp.o -MF CMakeFiles/py.dir/python/topo.cpp.o.d -o CMakeFiles/py.dir/python/topo.cpp.o -c /build/gemmi-0.5.7+ds/python/topo.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/crd.hpp:13, @@ -871,78 +912,78 @@ 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' +[ 43%] Built target output +make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' [ 43%] Built target mapcoef -[ 46%] Linking CXX shared module gemmi.cpython-311-x86_64-linux-gnu.so -/usr/bin/cmake -E cmake_link_script CMakeFiles/py.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -flto -Wl,-z,relro -shared -o gemmi.cpython-311-x86_64-linux-gnu.so CMakeFiles/py.dir/python/mol.cpp.o CMakeFiles/py.dir/python/gemmi.cpp.o CMakeFiles/py.dir/python/align.cpp.o CMakeFiles/py.dir/python/ccp4.cpp.o CMakeFiles/py.dir/python/chemcomp.cpp.o CMakeFiles/py.dir/python/cif.cpp.o CMakeFiles/py.dir/python/custom.cpp.o CMakeFiles/py.dir/python/elem.cpp.o CMakeFiles/py.dir/python/grid.cpp.o CMakeFiles/py.dir/python/hkl.cpp.o CMakeFiles/py.dir/python/meta.cpp.o CMakeFiles/py.dir/python/monlib.cpp.o CMakeFiles/py.dir/python/mtz.cpp.o CMakeFiles/py.dir/python/read.cpp.o CMakeFiles/py.dir/python/recgrid.cpp.o CMakeFiles/py.dir/python/scaling.cpp.o CMakeFiles/py.dir/python/search.cpp.o CMakeFiles/py.dir/python/sf.cpp.o CMakeFiles/py.dir/python/sym.cpp.o CMakeFiles/py.dir/python/topo.cpp.o CMakeFiles/py.dir/python/unitcell.cpp.o CMakeFiles/py.dir/python/write.cpp.o /usr/lib/x86_64-linux-gnu/libz.so make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -[ 46%] Built target input +[ 43%] Built target input make -f CMakeFiles/program.dir/build.make CMakeFiles/program.dir/depend make[3]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu 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CMakeFiles/program.dir/src/grep.cpp.o -MF CMakeFiles/program.dir/src/grep.cpp.o.d -o CMakeFiles/program.dir/src/grep.cpp.o -c /build/gemmi-0.5.7+ds/src/grep.cpp /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/h.cpp.o -MF CMakeFiles/program.dir/src/h.cpp.o.d -o CMakeFiles/program.dir/src/h.cpp.o -c /build/gemmi-0.5.7+ds/src/h.cpp +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/json2cif.cpp.o -MF CMakeFiles/program.dir/src/json2cif.cpp.o.d -o CMakeFiles/program.dir/src/json2cif.cpp.o -c 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CMakeFiles/program.dir/src/map.cpp.o -c /build/gemmi-0.5.7+ds/src/map.cpp -[ 70%] Building CXX object CMakeFiles/program.dir/src/map2sf.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/map2sf.cpp.o -MF CMakeFiles/program.dir/src/map2sf.cpp.o.d -o CMakeFiles/program.dir/src/map2sf.cpp.o -c /build/gemmi-0.5.7+ds/src/map2sf.cpp -[ 70%] Building CXX object CMakeFiles/program.dir/src/mask.cpp.o -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mask.cpp.o -MF CMakeFiles/program.dir/src/mask.cpp.o.d -o CMakeFiles/program.dir/src/mask.cpp.o -c /build/gemmi-0.5.7+ds/src/mask.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, from /build/gemmi-0.5.7+ds/src/contents.cpp:13: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ +[ 68%] Building CXX object CMakeFiles/program.dir/src/mask.cpp.o +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mask.cpp.o -MF CMakeFiles/program.dir/src/mask.cpp.o.d -o CMakeFiles/program.dir/src/mask.cpp.o -c /build/gemmi-0.5.7+ds/src/mask.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, from /build/gemmi-0.5.7+ds/src/convert.cpp:16: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ -[ 73%] Building CXX object CMakeFiles/program.dir/src/merge.cpp.o +[ 70%] Building CXX object CMakeFiles/program.dir/src/merge.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/merge.cpp.o -MF CMakeFiles/program.dir/src/merge.cpp.o.d -o CMakeFiles/program.dir/src/merge.cpp.o -c /build/gemmi-0.5.7+ds/src/merge.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/mtz2cif.hpp:24, from /build/gemmi-0.5.7+ds/src/merge.cpp:14: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ -[ 75%] Building CXX object CMakeFiles/program.dir/src/mondiff.cpp.o +[ 73%] Building CXX object CMakeFiles/program.dir/src/mondiff.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mondiff.cpp.o -MF CMakeFiles/program.dir/src/mondiff.cpp.o.d -o CMakeFiles/program.dir/src/mondiff.cpp.o -c /build/gemmi-0.5.7+ds/src/mondiff.cpp -[ 78%] Building CXX object CMakeFiles/program.dir/src/mtz.cpp.o +[ 75%] Building CXX object CMakeFiles/program.dir/src/mtz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -Wno-psabi -MD -MT CMakeFiles/program.dir/src/mtz.cpp.o -MF CMakeFiles/program.dir/src/mtz.cpp.o.d -o CMakeFiles/program.dir/src/mtz.cpp.o -c /build/gemmi-0.5.7+ds/src/mtz.cpp -lto-wrapper: warning: using serial compilation of 112 LTRANS jobs -lto-wrapper: note: see the '-flto' option documentation for more information -[ 78%] Building CXX object CMakeFiles/program.dir/src/mtz2cif.cpp.o +[ 75%] Building CXX object CMakeFiles/program.dir/src/mtz2cif.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mtz2cif.cpp.o -MF CMakeFiles/program.dir/src/mtz2cif.cpp.o.d -o CMakeFiles/program.dir/src/mtz2cif.cpp.o -c /build/gemmi-0.5.7+ds/src/mtz2cif.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/mtz2cif.hpp:24, from /build/gemmi-0.5.7+ds/src/mtz2cif.cpp:8: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ +[ 78%] Linking CXX shared module gemmi.cpython-311-x86_64-linux-gnu.so +/usr/bin/cmake -E cmake_link_script CMakeFiles/py.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -flto -Wl,-z,relro -shared -o gemmi.cpython-311-x86_64-linux-gnu.so CMakeFiles/py.dir/python/mol.cpp.o CMakeFiles/py.dir/python/gemmi.cpp.o CMakeFiles/py.dir/python/align.cpp.o CMakeFiles/py.dir/python/ccp4.cpp.o CMakeFiles/py.dir/python/chemcomp.cpp.o CMakeFiles/py.dir/python/cif.cpp.o CMakeFiles/py.dir/python/custom.cpp.o CMakeFiles/py.dir/python/elem.cpp.o CMakeFiles/py.dir/python/grid.cpp.o CMakeFiles/py.dir/python/hkl.cpp.o CMakeFiles/py.dir/python/meta.cpp.o CMakeFiles/py.dir/python/monlib.cpp.o CMakeFiles/py.dir/python/mtz.cpp.o CMakeFiles/py.dir/python/read.cpp.o CMakeFiles/py.dir/python/recgrid.cpp.o CMakeFiles/py.dir/python/scaling.cpp.o CMakeFiles/py.dir/python/search.cpp.o CMakeFiles/py.dir/python/sf.cpp.o CMakeFiles/py.dir/python/sym.cpp.o CMakeFiles/py.dir/python/topo.cpp.o CMakeFiles/py.dir/python/unitcell.cpp.o CMakeFiles/py.dir/python/write.cpp.o /usr/lib/x86_64-linux-gnu/libz.so [ 80%] Building CXX object CMakeFiles/program.dir/src/prep.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/prep.cpp.o -MF CMakeFiles/program.dir/src/prep.cpp.o.d -o CMakeFiles/program.dir/src/prep.cpp.o -c /build/gemmi-0.5.7+ds/src/prep.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/crd.hpp:13, @@ -963,13 +1004,13 @@ /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/rmsz.cpp.o -MF CMakeFiles/program.dir/src/rmsz.cpp.o.d -o CMakeFiles/program.dir/src/rmsz.cpp.o -c /build/gemmi-0.5.7+ds/src/rmsz.cpp [ 87%] Building CXX object CMakeFiles/program.dir/src/sf2map.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/sf2map.cpp.o -MF CMakeFiles/program.dir/src/sf2map.cpp.o.d -o CMakeFiles/program.dir/src/sf2map.cpp.o -c /build/gemmi-0.5.7+ds/src/sf2map.cpp -[ 90%] Building CXX object CMakeFiles/program.dir/src/sfcalc.cpp.o -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/sfcalc.cpp.o -MF CMakeFiles/program.dir/src/sfcalc.cpp.o.d -o CMakeFiles/program.dir/src/sfcalc.cpp.o -c /build/gemmi-0.5.7+ds/src/sfcalc.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, from /build/gemmi-0.5.7+ds/src/sf2map.cpp:8: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ +[ 90%] Building CXX object CMakeFiles/program.dir/src/sfcalc.cpp.o +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/sfcalc.cpp.o -MF CMakeFiles/program.dir/src/sfcalc.cpp.o.d -o CMakeFiles/program.dir/src/sfcalc.cpp.o -c /build/gemmi-0.5.7+ds/src/sfcalc.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/smcif.hpp:12, from /build/gemmi-0.5.7+ds/src/sfcalc.cpp:20: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] @@ -985,6 +1026,8 @@ /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/validate_mon.cpp.o -MF CMakeFiles/program.dir/src/validate_mon.cpp.o.d -o CMakeFiles/program.dir/src/validate_mon.cpp.o -c /build/gemmi-0.5.7+ds/src/validate_mon.cpp [ 97%] Building CXX object CMakeFiles/program.dir/src/wcn.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/wcn.cpp.o -MF CMakeFiles/program.dir/src/wcn.cpp.o.d -o CMakeFiles/program.dir/src/wcn.cpp.o -c /build/gemmi-0.5.7+ds/src/wcn.cpp +lto-wrapper: warning: using serial 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--strip-program=true" check VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" check VERBOSE=1 make[2]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/gemmi-0.5.7+ds -B/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check @@ -1012,125 +1055,127 @@ /usr/bin/cmake -E cmake_progress_start /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles 41 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[4]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -make -f CMakeFiles/test_disulf.dir/build.make CMakeFiles/test_disulf.dir/depend -make -f CMakeFiles/cpptest.dir/build.make CMakeFiles/cpptest.dir/depend -make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/test_disulf.dir/DependInfo.cmake --color= -make -f CMakeFiles/hello.dir/build.make CMakeFiles/hello.dir/depend -make -f CMakeFiles/doc_example.dir/build.make CMakeFiles/doc_example.dir/depend -make -f CMakeFiles/doc_example2.dir/build.make CMakeFiles/doc_example2.dir/depend -make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/hello.dir/DependInfo.cmake --color= -make -f CMakeFiles/check_conn.dir/build.make CMakeFiles/check_conn.dir/depend -make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/cpptest.dir/DependInfo.cmake --color= -make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/doc_example.dir/DependInfo.cmake --color= +make -f CMakeFiles/doc_maybegz.dir/build.make CMakeFiles/doc_maybegz.dir/depend +make -f CMakeFiles/mapcoef.dir/build.make CMakeFiles/mapcoef.dir/depend make -f CMakeFiles/input.dir/build.make CMakeFiles/input.dir/depend -make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/doc_example2.dir/DependInfo.cmake --color= make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/depend +make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' +cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/doc_maybegz.dir/DependInfo.cmake --color= make -f CMakeFiles/output.dir/build.make CMakeFiles/output.dir/depend +make -f CMakeFiles/cpptest.dir/build.make CMakeFiles/cpptest.dir/depend make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/options.dir/DependInfo.cmake --color= +cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/mapcoef.dir/DependInfo.cmake --color= +make -f CMakeFiles/doc_newmtz.dir/build.make CMakeFiles/doc_newmtz.dir/depend make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds 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'/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' +cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/test_disulf.dir/DependInfo.cmake --color= +make -f CMakeFiles/check_conn.dir/build.make CMakeFiles/check_conn.dir/depend make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -make -f CMakeFiles/doc_example.dir/build.make CMakeFiles/doc_example.dir/build -make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -Dependencies file "CMakeFiles/output.dir/src/output.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/output.dir/compiler_depend.internal". +cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds 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generated dependencies of target options -Consolidate compiler generated dependencies of target input -make -f CMakeFiles/doc_maybegz.dir/build.make CMakeFiles/doc_maybegz.dir/build +cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/doc_example2.dir/DependInfo.cmake --color= +make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/build make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -[ 2%] Building CXX object CMakeFiles/hello.dir/examples/hello.cpp.o -[ 4%] Building CXX object CMakeFiles/test_disulf.dir/tests/disulf.cpp.o +Consolidate compiler generated dependencies of target mapcoef make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' 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+make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' +/usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o -MF CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o.d -o CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o -c /build/gemmi-0.5.7+ds/docs/code/mutate.cpp +make -f CMakeFiles/doc_example2.dir/build.make CMakeFiles/doc_example2.dir/build +[ 7%] Building CXX object CMakeFiles/cpptest.dir/tests/cif.cpp.o +make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' +[ 7%] Building CXX object CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o +/usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat 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CMakeFiles/doc_example.dir/docs/code/sym.cpp.o +/usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -MF CMakeFiles/test_disulf.dir/tests/disulf.cpp.o.d -o CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -c /build/gemmi-0.5.7+ds/tests/disulf.cpp +/usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UNDEBUG -std=c++17 -MD -MT CMakeFiles/doc_example.dir/docs/code/sym.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/sym.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/sym.cpp.o -c /build/gemmi-0.5.7+ds/docs/code/sym.cpp +[ 19%] Building CXX object CMakeFiles/doc_example.dir/docs/code/elem.cpp.o +[ 21%] Building CXX object CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o +/usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UNDEBUG -std=c++17 -MD -MT CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o -c /build/gemmi-0.5.7+ds/docs/code/resinfo.cpp +[ 24%] Building CXX object CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o +[ 26%] Building CXX object CMakeFiles/hello.dir/examples/hello.cpp.o +/usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o -MF 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CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o -MF CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o.d -o CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o -c /build/gemmi-0.5.7+ds/docs/code/mutate.cpp +/usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UNDEBUG -std=c++17 -MD -MT CMakeFiles/doc_example.dir/docs/code/cell.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/cell.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/cell.cpp.o -c /build/gemmi-0.5.7+ds/docs/code/cell.cpp make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' cd /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu 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Dependencies file "CMakeFiles/program.dir/src/blobs.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". Dependencies file "CMakeFiles/program.dir/src/cif2json.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". @@ -1140,7 +1185,6 @@ Dependencies file "CMakeFiles/program.dir/src/convert.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". Dependencies file "CMakeFiles/program.dir/src/fprime.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". Dependencies file "CMakeFiles/program.dir/src/grep.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". -[ 34%] Building CXX object CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o Dependencies file "CMakeFiles/program.dir/src/h.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". Dependencies file "CMakeFiles/program.dir/src/json2cif.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". Dependencies file "CMakeFiles/program.dir/src/main.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". @@ -1149,7 +1193,6 @@ Dependencies file "CMakeFiles/program.dir/src/mask.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". Dependencies file "CMakeFiles/program.dir/src/merge.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". 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Dependencies file "CMakeFiles/program.dir/src/prep.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". @@ -1163,6 +1206,11 @@ Dependencies file "CMakeFiles/program.dir/src/validate.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". Dependencies file "CMakeFiles/program.dir/src/validate_mon.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". Dependencies file "CMakeFiles/program.dir/src/wcn.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". +In file included from /build/gemmi-0.5.7+ds/include/gemmi/mtz.hpp:1176, + from /build/gemmi-0.5.7+ds/docs/code/newmtz.cpp:2: +/build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] + 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." + | ^~~~~~~ Consolidate compiler generated dependencies of target program make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/program.dir/build.make CMakeFiles/program.dir/build @@ -1176,11 +1224,6 @@ make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/print-version.dir/build.make CMakeFiles/print-version.dir/build make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -In file included from /build/gemmi-0.5.7+ds/include/gemmi/mtz.hpp:1176, - from /build/gemmi-0.5.7+ds/docs/code/newmtz.cpp:2: -/build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] - 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." - | ^~~~~~~ [ 90%] gemmi --version cd /build/gemmi-0.5.7+ds && /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu/gemmi --version gemmi 0.5.7 @@ -1197,19 +1240,19 @@ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/doc_example.dir/docs/code/sym.cpp.o CMakeFiles/doc_example.dir/docs/code/elem.cpp.o CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o CMakeFiles/doc_example.dir/docs/code/cell.cpp.o -o doc_example make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' [ 92%] Built target doc_example -[ 92%] Linking CXX executable hello -/usr/bin/cmake -E cmake_link_script CMakeFiles/hello.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/hello.dir/examples/hello.cpp.o -o hello -make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' -[ 92%] Built target hello [ 95%] Linking CXX executable doc_newmtz /usr/bin/cmake -E cmake_link_script CMakeFiles/doc_newmtz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o -o doc_newmtz +make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' +[ 95%] Built target doc_newmtz +[ 95%] Linking CXX executable hello +/usr/bin/cmake -E cmake_link_script CMakeFiles/hello.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/hello.dir/examples/hello.cpp.o -o hello [ 95%] Linking CXX executable doc_example2 /usr/bin/cmake -E cmake_link_script CMakeFiles/doc_example2.dir/link.txt --verbose=1 -make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o -o doc_example2 -[ 95%] Built target doc_newmtz +make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' +[ 95%] Built target hello make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' [ 95%] Built target doc_example2 [ 95%] Linking CXX executable cpptest @@ -1241,11 +1284,11 @@ /usr/bin/ctest -C None Test project /build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu Start 1: cpptest -1/1 Test #1: cpptest .......................... Passed 0.03 sec +1/1 Test #1: cpptest .......................... Passed 0.00 sec 100% tests passed, 0 tests failed out of 1 -Total Test time (real) = 0.39 sec +Total Test time (real) = 0.01 sec make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' [100%] Built target check make[4]: Leaving directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' @@ -1276,13 +1319,13 @@ tests/test_twin.py .... [ 91%] tests/test_unitcell.py .............. [100%] -================= 162 passed, 9 skipped, 2 deselected in 8.54s ================= +================= 162 passed, 9 skipped, 2 deselected in 1.81s ================= make[1]: Leaving directory '/build/gemmi-0.5.7+ds' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/gemmi-0.5.7\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/gemmi-0.5.7\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/gemmi-0.5.7+ds -B/build/gemmi-0.5.7+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1452,10 +1495,10 @@ dpkg-gencontrol: warning: Provides field of package python3-gemmi: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'gemmi' in '../gemmi_0.5.7+ds-2_amd64.deb'. -dpkg-deb: building package 'gemmi-dev' in '../gemmi-dev_0.5.7+ds-2_amd64.deb'. dpkg-deb: building package 'gemmi-dbgsym' in '../gemmi-dbgsym_0.5.7+ds-2_amd64.deb'. +dpkg-deb: building package 'gemmi' in '../gemmi_0.5.7+ds-2_amd64.deb'. dpkg-deb: building package 'python3-gemmi' in '../python3-gemmi_0.5.7+ds-2_amd64.deb'. +dpkg-deb: building package 'gemmi-dev' in '../gemmi-dev_0.5.7+ds-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../gemmi_0.5.7+ds-2_amd64.buildinfo dpkg-genchanges --build=binary -O../gemmi_0.5.7+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1463,12 +1506,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3786332/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3786332/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1475406 and its subdirectories -I: Current time: Sun Apr 30 13:15:51 -12 2023 -I: pbuilder-time-stamp: 1682903751 +I: removing directory /srv/workspace/pbuilder/3786332 and its subdirectories +I: Current time: Sun Jun 2 21:49:58 +14 2024 +I: pbuilder-time-stamp: 1717314598