Diff of the two buildlogs: -- --- b1/build.log 2023-05-11 03:45:58.542788075 +0000 +++ b2/build.log 2023-05-11 03:54:11.829157167 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 10 15:34:06 -12 2023 -I: pbuilder-time-stamp: 1683776046 +I: Current time: Thu Jun 13 00:09:04 +14 2024 +I: pbuilder-time-stamp: 1718186944 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./fenicsx-performance-tests_0.5.0~git20220731.821823b.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.5.0~git20220731.821823b-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Sep 22 00:05:12 2022 -12 +gpgv: Signature made Fri Sep 23 02:05:12 2022 +14 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc: no acceptable signature found @@ -27,135 +27,167 @@ dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1990128/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 13 00:09 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='0d1961d02ef44df3a594357cba3d874f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1990128' - PS1='# ' - PS2='> ' + INVOCATION_ID=3100bf87bafe4ae5bcf3c44c43c8f143 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4142753 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/pbuilderrc_kdFJ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/b1 --logfile b1/build.log fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/pbuilderrc_BaY9 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/b2 --logfile b2/build.log --extrapackages usrmerge fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos1-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more - -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount - -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1990128/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 2023 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 2023 more + -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount + -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Jun 13 00:09 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 2023 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -497,7 +529,7 @@ Get: 292 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get: 293 http://deb.debian.org/debian bookworm/main amd64 libdolfinx-dev amd64 1:0.5.2-2+b1 [155 kB] Get: 294 http://deb.debian.org/debian bookworm/main amd64 xtensor-dev all 0.24.3-1 [5372 B] -Fetched 203 MB in 44s (4654 kB/s) +Fetched 203 MB in 18s (11.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -1713,8 +1745,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_source.changes +I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.5.0~git20220731.821823b-1 dpkg-buildpackage: info: source distribution unstable @@ -1810,7 +1853,7 @@ -- Build files have been written to: /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src - cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -B"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/CMakeFiles" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu//CMakeFiles/progress.marks" @@ -1818,27 +1861,27 @@ make[2]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' -[ 10%] Generating Elasticity.c -[ 20%] Generating Poisson.c -ffcx /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/Elasticity.py +[ 10%] Generating Poisson.c +[ 20%] Generating Elasticity.c ffcx /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/Poisson.py +ffcx /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/Elasticity.py cd "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/mesh.cpp" +[ 30%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o +[ 40%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o [ 50%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o +[ 60%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/main.cpp" -/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK 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-Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/poisson_problem.cpp" [ 70%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/mesh.cpp" +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/elasticity_problem.cpp" [ 80%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK 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-I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/Poisson.c" [100%] Linking CXX executable dolfinx-scaling-test /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx-scaling-test.dir/link.txt --verbose=1 @@ -1852,61 +1895,61 @@ make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' debian/tests/run-dolfinx-scaling-test -p /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== -2023-05-10 15:42:54.614 ( 0.930s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks -2023-05-10 15:42:54.614 ( 0.930s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph -2023-05-10 15:42:54.614 ( 0.930s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph -2023-05-10 15:42:54.760 ( 1.076s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph -2023-05-10 15:42:54.760 ( 1.077s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:42:54.774 ( 1.091s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:42:54.774 ( 1.091s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 -2023-05-10 15:42:54.903 ( 1.220s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 66332, non-local: 962) -2023-05-10 15:42:54.903 ( 1.220s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH -2023-05-10 15:43:08.996 ( 15.313s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 -2023-05-10 15:43:09.030 ( 15.347s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -2023-05-10 15:43:09.120 ( 15.436s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph -2023-05-10 15:43:09.243 ( 15.559s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(122) 1400-17068 - -2023-05-10 15:43:09.247 ( 15.564s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology -2023-05-10 15:43:09.290 ( 15.607s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 -2023-05-10 15:43:09.314 ( 15.631s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -2023-05-10 15:43:09.572 ( 15.889s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:09.614 ( 15.931s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:09.667 ( 15.983s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:09.698 ( 16.015s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:09.789 ( 16.105s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:09.811 ( 16.127s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:09.882 ( 16.199s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 -2023-05-10 15:43:09.894 ( 16.211s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -2023-05-10 15:43:10.063 ( 16.379s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:10.094 ( 16.411s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:10.171 ( 16.488s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 -2023-05-10 15:43:10.194 ( 16.511s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -2023-05-10 15:43:10.195 ( 16.511s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 -2023-05-10 15:43:10.231 ( 16.547s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:10.254 ( 16.571s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:10.254 ( 16.571s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 -2023-05-10 15:43:10.475 ( 16.791s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 +2024-06-13 00:15:06.196 ( 0.636s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks +2024-06-13 00:15:06.196 ( 0.636s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph +2024-06-13 00:15:06.196 ( 0.636s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph +2024-06-13 00:15:06.247 ( 0.687s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph +2024-06-13 00:15:06.259 ( 0.699s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:06.260 ( 0.700s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:06.260 ( 0.700s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 +2024-06-13 00:15:06.324 ( 0.764s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 66332, non-local: 962) +2024-06-13 00:15:06.324 ( 0.764s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH +2024-06-13 00:15:19.021 ( 13.461s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 +2024-06-13 00:15:19.043 ( 13.483s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +2024-06-13 00:15:19.093 ( 13.533s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph +2024-06-13 00:15:19.178 ( 13.618s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(119) 16668-1182 + +2024-06-13 00:15:19.191 ( 13.631s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology +2024-06-13 00:15:19.211 ( 13.651s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 +2024-06-13 00:15:19.235 ( 13.675s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +2024-06-13 00:15:19.515 ( 13.955s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:19.539 ( 13.979s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:19.571 ( 14.011s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:19.603 ( 14.043s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:19.653 ( 14.093s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:19.683 ( 14.123s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:19.747 ( 14.187s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 +2024-06-13 00:15:19.763 ( 14.203s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +2024-06-13 00:15:19.851 ( 14.291s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:19.867 ( 14.307s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:19.923 ( 14.363s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 +2024-06-13 00:15:19.939 ( 14.379s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +2024-06-13 00:15:19.939 ( 14.379s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 +2024-06-13 00:15:19.971 ( 14.411s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:20.003 ( 14.443s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:20.003 ( 14.443s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (24x19x19) to be refined 0 times -2023-05-10 15:43:10.498 ( 16.815s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:10.562 ( 16.879s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:10.910 ( 17.227s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:10.934 ( 17.251s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:10.984 ( 17.301s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 -2023-05-10 15:43:10.985 ( 17.301s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. -2023-05-10 15:43:10.995 ( 17.311s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 -2023-05-10 15:43:10.997 ( 17.313s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:11.018 ( 17.335s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:11.079 ( 17.395s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:11.102 ( 17.419s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:11.174 ( 17.491s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 -2023-05-10 15:43:11.190 ( 17.507s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -2023-05-10 15:43:11.347 ( 17.663s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:11.370 ( 17.687s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:11.515 ( 17.831s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 -2023-05-10 15:43:11.515 ( 17.831s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 -2023-05-10 15:43:11.515 ( 17.831s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 -2023-05-10 15:43:11.515 ( 17.832s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 -2023-05-10 15:43:11.828 ( 18.144s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 220 to 542 +2024-06-13 00:15:20.087 ( 14.527s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 +2024-06-13 00:15:20.111 ( 14.551s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:20.127 ( 14.567s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:20.295 ( 14.735s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:20.323 ( 14.763s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:20.373 ( 14.813s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 +2024-06-13 00:15:20.373 ( 14.813s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. +2024-06-13 00:15:20.379 ( 14.819s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 +2024-06-13 00:15:20.381 ( 14.821s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:20.411 ( 14.851s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:20.471 ( 14.911s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:20.491 ( 14.931s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:20.551 ( 14.991s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 +2024-06-13 00:15:20.563 ( 15.003s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +2024-06-13 00:15:20.699 ( 15.139s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:20.727 ( 15.167s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:20.875 ( 15.315s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 +2024-06-13 00:15:20.876 ( 15.316s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 +2024-06-13 00:15:20.876 ( 15.316s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 +2024-06-13 00:15:20.876 ( 15.316s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 +2024-06-13 00:15:21.181 ( 15.621s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 212 to 562 ---------------------------------------------------------------- Test problem summary @@ -1921,7 +1964,7 @@ Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- -2023-05-10 15:43:13.831 ( 20.147s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. +2024-06-13 00:15:21.537 ( 15.978s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -1939,7 +1982,7 @@ AGG specific options Number of levels to square graph 1 Number smoothing steps 1 - Complexity: grid = 1.0688 operator = 1.27764 + Complexity: grid = 1.0704 operator = 1.29179 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly @@ -1964,33 +2007,33 @@ tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd - factor fill ratio given 5., needed 1.05547 + factor fill ratio given 5., needed 1.0394 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=228, cols=228, bs=6 + rows=240, cols=240, bs=6 package used to perform factorization: petsc - total: nonzeros=50688, allocated nonzeros=50688 - using I-node routines: found 50 nodes, limit used is 5 + total: nonzeros=55080, allocated nonzeros=55080 + using I-node routines: found 63 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=228, cols=228, bs=6 - total: nonzeros=48024, allocated nonzeros=48024 + rows=240, cols=240, bs=6 + total: nonzeros=52992, allocated nonzeros=52992 total number of mallocs used during MatSetValues calls=0 - using I-node routines: found 64 nodes, limit used is 5 + using I-node routines: found 71 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=228, cols=228, bs=6 - total: nonzeros=48024, allocated nonzeros=48024 + rows=240, cols=240, bs=6 + total: nonzeros=52992, allocated nonzeros=52992 total number of mallocs used during MatSetValues calls=0 - using I-node (on process 0) routines: found 64 nodes, limit used is 5 + using I-node (on process 0) routines: found 71 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev - eigenvalue targets used: min 0.202116, max 2.22328 - eigenvalues provided (min 1.03099e-06, max 2.02116) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.294556, max 3.24011 + eigenvalues provided (min 2.59195e-06, max 2.94556) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2001,17 +2044,17 @@ linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=1836, cols=1836, bs=6 - total: nonzeros=299448, allocated nonzeros=299448 + rows=1872, cols=1872, bs=6 + total: nonzeros=312192, allocated nonzeros=312192 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 192 nodes, limit used is 5 + using I-node (on process 0) routines: found 204 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev - eigenvalue targets used: min 0.258439, max 2.84283 - eigenvalues provided (min 0.0700878, max 2.58439) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.257453, max 2.83199 + eigenvalues provided (min 0.0699861, max 2.57453) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2026,7 +2069,7 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3411 nodes, limit used is 5 + using I-node (on process 0) routines: found 3344 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes @@ -2035,50 +2078,50 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3411 nodes, limit used is 5 + using I-node (on process 0) routines: found 3344 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- -Build BoxMesh | 1 15.879174 15.879174 -Build dofmap data | 2 0.396063 0.792125 -Build sparsity | 1 0.056259 0.056259 -Compute connectivity 2-3 | 1 0.000703 0.000703 -Compute dof reordering map | 2 0.000241 0.000482 -Compute entities of dim = 2 | 1 0.513584 0.513584 -Compute graph partition (SCOTCH) | 1 14.069075 14.069075 -Compute local part of mesh dual graph | 2 0.126624 0.253247 -Compute local-to-local map | 1 0.000557 0.000557 -Compute non-local part of mesh dual graph | 1 0.167024 0.167024 -Compute-local-to-global links for global/local adjacency list | 1 0.000586 0.000586 -Distribute AdjacencyList nodes to destination ranks | 1 0.151541 0.151541 -Distribute row-wise data (scalable) | 1 0.252201 0.252201 -Extract partition boundaries from SCOTCH graph | 1 0.000807 0.000807 -GPS: create_level_structure | 5 0.003258 0.019546 +Build BoxMesh | 1 13.906208 13.906208 +Build dofmap data | 2 0.324138 0.648275 +Build sparsity | 1 0.057683 0.057683 +Compute connectivity 2-3 | 1 0.000794 0.000794 +Compute dof reordering map | 2 0.000236 0.000471 +Compute entities of dim = 2 | 1 0.294292 0.294292 +Compute graph partition (SCOTCH) | 1 12.672614 12.672614 +Compute local part of mesh dual graph | 2 0.070428 0.140857 +Compute local-to-local map | 1 0.000536 0.000536 +Compute non-local part of mesh dual graph | 1 0.105127 0.105127 +Compute-local-to-global links for global/local adjacency list | 1 0.000560 0.000560 +Distribute AdjacencyList nodes to destination ranks | 1 0.096003 0.096003 +Distribute row-wise data (scalable) | 1 0.140250 0.140250 +Extract partition boundaries from SCOTCH graph | 1 0.000905 0.000905 +GPS: create_level_structure | 2 0.002577 0.020615 Get SCOTCH graph data | 1 0.000017 0.000017 -Gibbs-Poole-Stockmeyer ordering | 1 0.029146 0.029146 -Init MPI | 1 0.759492 0.759492 -Init PETSc | 1 0.175823 0.175823 -Init dofmap from element dofmap | 2 0.001838 0.003676 -Init logging | 1 0.000075 0.000075 -PETSc Krylov solver | 1 14.425106 14.425106 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.030899 0.030899 -SCOTCH: call SCOTCH_dgraphHalo | 1 0.055922 0.055922 -SCOTCH: call SCOTCH_dgraphPart | 1 13.999173 13.999173 -SparsityPattern::assemble | 1 0.086574 0.086574 -Topology: create | 1 0.565159 0.565159 -Topology: determine shared index ownership | 1 0.182722 0.182722 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.014201 0.014201 -ZZZ Assemble matrix | 1 0.707100 0.707100 -ZZZ Assemble vector | 1 0.023993 0.023993 -ZZZ Create Mesh | 1 15.879354 15.879354 -ZZZ Create RHS function | 1 0.135025 0.135025 -ZZZ Create boundary conditions | 1 0.155647 0.155647 -ZZZ Create facets and facet->cell connectivity | 1 0.514355 0.514355 -ZZZ Create forms | 1 0.000101 0.000101 -ZZZ Create near-nullspace | 1 0.860468 0.860468 -ZZZ FunctionSpace | 1 0.437263 0.437263 -ZZZ Solve | 1 14.702131 14.702131 -*** Number of Krylov iterations: 20 +Gibbs-Poole-Stockmeyer ordering | 1 0.023143 0.023143 +Init MPI | 1 0.607633 0.607633 +Init PETSc | 1 0.024491 0.024491 +Init dofmap from element dofmap | 2 0.002018 0.004037 +Init logging | 1 0.000077 0.000077 +PETSc Krylov solver | 1 1.181199 1.181199 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.015061 0.015061 +SCOTCH: call SCOTCH_dgraphHalo | 1 0.045372 0.045372 +SCOTCH: call SCOTCH_dgraphPart | 1 12.627245 12.627245 +SparsityPattern::assemble | 1 0.094215 0.094215 +Topology: create | 1 0.460588 0.460588 +Topology: determine shared index ownership | 1 0.162330 0.162330 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.009958 0.009958 +ZZZ Assemble matrix | 1 0.287693 0.287693 +ZZZ Assemble vector | 1 0.018948 0.018948 +ZZZ Create Mesh | 1 13.906369 13.906369 +ZZZ Create RHS function | 1 0.137992 0.137992 +ZZZ Create boundary conditions | 1 0.155745 0.155745 +ZZZ Create facets and facet->cell connectivity | 1 0.295177 0.295177 +ZZZ Create forms | 1 0.000118 0.000118 +ZZZ Create near-nullspace | 1 0.020962 0.020962 +ZZZ FunctionSpace | 1 0.393417 0.393417 +ZZZ Solve | 1 1.185164 1.185164 +*** Number of Krylov iterations: 21 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** @@ -2086,17 +2129,17 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos1-amd64 with 3 processors, by pbuilder1 Wed May 10 15:43:28 2023 +/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Thu Jun 13 00:15:22 2024 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total -Time (sec): 3.367e+01 1.000 3.366e+01 +Time (sec): 1.654e+01 1.000 1.654e+01 Objects: 4.630e+02 1.004 4.617e+02 -Flops: 2.161e+08 1.088 2.075e+08 6.226e+08 -Flops/sec: 6.419e+06 1.088 6.165e+06 1.849e+07 -MPI Msg Count: 7.930e+02 1.044 7.713e+02 2.314e+03 -MPI Msg Len (bytes): 6.818e+06 1.535 6.995e+03 1.619e+07 -MPI Reductions: 6.330e+02 1.000 +Flops: 2.266e+08 1.093 2.161e+08 6.482e+08 +Flops/sec: 1.370e+07 1.093 1.307e+07 3.920e+07 +MPI Msg Count: 8.190e+02 1.044 7.967e+02 2.390e+03 +MPI Msg Len (bytes): 6.535e+06 1.336 7.329e+03 1.752e+07 +MPI Reductions: 6.370e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops @@ -2104,7 +2147,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 3.3663e+01 100.0% 6.2256e+08 100.0% 2.314e+03 100.0% 6.995e+03 100.0% 6.150e+02 97.2% + 0: Main Stage: 1.6537e+01 100.0% 6.4823e+08 100.0% 2.390e+03 100.0% 7.329e+03 100.0% 6.190e+02 97.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -2128,79 +2171,79 @@ --- Event Stage 0: Main Stage -BuildTwoSided 103 1.0 1.6387e+00 1.0 0.00e+00 0.0 1.4e+02 4.0e+00 1.0e+02 5 0 6 0 16 5 0 6 0 17 0 -BuildTwoSidedF 86 1.0 1.3208e+00 1.1 0.00e+00 0.0 1.1e+02 3.7e+04 8.6e+01 4 0 5 26 14 4 0 5 26 14 0 -MatMult 208 1.0 2.8766e+00 1.1 1.17e+08 1.1 1.3e+03 5.2e+03 2.0e+00 8 54 55 41 0 8 54 55 41 0 118 -MatMultAdd 42 1.0 3.9652e-01 1.4 9.72e+06 1.0 1.7e+02 1.3e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 72 -MatMultTranspose 42 1.0 5.2831e-01 1.1 9.73e+06 1.0 1.8e+02 1.3e+03 2.0e+00 2 5 8 1 0 2 5 8 1 0 54 -MatSolve 21 0.0 4.1084e-03 0.0 2.12e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 517 -MatLUFactorSym 1 1.0 1.5167e-02 678.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatLUFactorNum 1 1.0 1.4174e-02 4610.9 7.16e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 505 -MatConvert 1 1.0 3.5419e-02 1.5 0.00e+00 0.0 1.2e+01 6.8e+02 1.0e+00 0 0 1 0 0 0 0 1 0 0 0 -MatScale 4 1.0 8.4818e-03 8.6 4.63e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 161 -MatResidual 42 1.0 5.6848e-01 1.1 2.27e+07 1.1 2.5e+02 5.0e+03 0.0e+00 2 10 11 8 0 2 10 11 8 0 115 -MatAssemblyBegin 59 1.0 7.0319e-01 1.2 0.00e+00 0.0 1.1e+02 3.7e+04 3.0e+01 2 0 5 26 5 2 0 5 26 5 0 -MatAssemblyEnd 59 1.0 1.5340e+00 1.1 1.08e+05 2.3 0.0e+00 0.0e+00 9.6e+01 4 0 0 0 15 4 0 0 0 16 0 -MatGetRowIJ 1 0.0 6.4816e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCreateSubMat 2 1.0 9.7855e-02 1.0 0.00e+00 0.0 1.0e+01 4.0e+04 2.8e+01 0 0 0 2 4 0 0 0 2 5 0 -MatGetOrdering 1 0.0 1.7701e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCoarsen 2 1.0 1.9959e+00 1.0 1.38e+05 1.0 2.3e+02 7.2e+02 9.6e+01 6 0 10 1 15 6 0 10 1 16 0 -MatZeroEntries 3 1.0 6.1907e-04 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 6 1.5 3.1980e-02 7.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 -MatAXPY 4 1.0 2.3947e-01 1.1 1.14e+05 1.0 0.0e+00 0.0e+00 1.2e+01 1 0 0 0 2 1 0 0 0 2 1 -MatTranspose 10 1.0 7.3568e-01 1.0 0.00e+00 0.0 9.0e+01 2.0e+03 3.2e+01 2 0 4 1 5 2 0 4 1 5 0 -MatMatMultSym 9 1.0 7.1904e-01 1.0 0.00e+00 0.0 5.1e+01 1.1e+04 2.8e+01 2 0 2 4 4 2 0 2 4 5 0 -MatMatMultNum 3 1.0 1.1806e-01 1.2 6.49e+06 1.1 1.5e+01 2.4e+04 3.0e+00 0 3 1 2 0 0 3 1 2 0 158 -MatPtAPSymbolic 3 1.0 1.5068e+00 1.0 0.00e+00 0.0 9.9e+01 3.4e+04 2.1e+01 4 0 4 21 3 4 0 4 21 3 0 -MatPtAPNumeric 3 1.0 1.0985e+00 1.0 6.04e+07 1.2 3.0e+01 9.0e+04 1.5e+01 3 26 1 17 2 3 26 1 17 2 146 -MatGetLocalMat 9 1.0 4.8540e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatGetBrAoCol 9 1.0 2.9813e-01 1.2 0.00e+00 0.0 1.2e+02 3.0e+04 1.0e+00 1 0 5 22 0 1 0 5 22 0 0 -VecMDot 20 1.0 3.3039e-01 1.1 1.19e+06 1.0 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 11 -VecTDot 40 1.0 4.3889e-01 1.2 8.19e+05 1.0 0.0e+00 0.0e+00 4.0e+01 1 0 0 0 6 1 0 0 0 7 5 -VecNorm 43 1.0 5.9381e-01 1.1 6.68e+05 1.0 0.0e+00 0.0e+00 4.3e+01 2 0 0 0 7 2 0 0 0 7 3 -VecScale 22 1.0 4.8049e-04 1.0 1.19e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 729 -VecCopy 130 1.0 1.3679e-02 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 194 1.0 6.8856e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 42 1.0 1.8306e-03 1.0 8.40e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1346 -VecAYPX 271 1.0 1.7922e-02 2.2 2.20e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 362 -VecAXPBYCZ 84 1.0 2.4159e-03 1.0 2.27e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2767 -VecMAXPY 22 1.0 2.1516e-03 1.2 1.41e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1924 -VecAssemblyBegin 57 1.0 8.1318e-01 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 2 0 0 0 9 2 0 0 0 9 0 -VecAssemblyEnd 57 1.0 5.3169e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecPointwiseMult 190 1.0 5.3824e-03 1.0 1.03e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 562 -VecScatterBegin 350 1.0 2.2343e-01 1.4 0.00e+00 0.0 1.8e+03 4.0e+03 8.0e+00 1 0 79 45 1 1 0 79 45 1 0 -VecScatterEnd 350 1.0 3.8585e+00 1.2 1.25e+04 2.6 0.0e+00 0.0e+00 0.0e+00 11 0 0 0 0 11 0 0 0 0 0 -VecNormalize 22 1.0 3.9059e-01 1.3 3.57e+05 1.0 0.0e+00 0.0e+00 2.2e+01 1 0 0 0 3 1 0 0 0 4 3 -SFSetGraph 35 1.0 3.0255e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 17 1.0 5.6851e-01 1.5 0.00e+00 0.0 1.6e+02 4.7e+02 1.7e+01 1 0 7 0 3 1 0 7 0 3 0 -SFBcastBegin 14 1.0 3.7962e-04 1.1 0.00e+00 0.0 8.4e+01 6.4e+02 0.0e+00 0 0 4 0 0 0 0 4 0 0 0 -SFBcastEnd 14 1.0 2.1790e-01 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 -SFReduceBegin 4 1.0 1.4159e-04 1.0 0.00e+00 0.0 1.8e+01 5.2e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 -SFReduceEnd 4 1.0 7.1803e-02 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFPack 368 1.0 1.4706e-02 6.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 368 1.0 1.1435e-03 1.2 1.25e+04 2.6 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 25 -KSPSetUp 7 1.0 5.1930e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 -KSPSolve 1 1.0 3.9418e+00 1.0 1.36e+08 1.1 1.5e+03 4.4e+03 6.7e+01 12 64 64 40 11 12 64 64 40 11 100 -KSPGMRESOrthog 20 1.0 3.3251e-01 1.1 2.38e+06 1.0 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 21 -PCSetUp_GAMG+ 1 1.0 1.0422e+01 1.0 8.11e+07 1.2 8.0e+02 1.1e+04 5.0e+02 31 35 34 53 79 31 35 34 53 81 21 - PCGAMGCreateG 2 1.0 7.8766e-01 1.0 4.96e+04 1.0 6.0e+01 2.8e+03 4.4e+01 2 0 3 1 7 2 0 3 1 7 0 - GAMG Coarsen 2 1.0 1.9972e+00 1.0 1.38e+05 1.0 2.3e+02 7.2e+02 9.6e+01 6 0 10 1 15 6 0 10 1 16 0 - GAMG MIS/Agg 2 1.0 1.9960e+00 1.0 1.38e+05 1.0 2.3e+02 7.2e+02 9.6e+01 6 0 10 1 15 6 0 10 1 16 0 - PCGAMGProl 2 1.0 3.4028e+00 1.0 0.00e+00 0.0 1.9e+02 1.6e+03 1.9e+02 10 0 8 2 30 10 0 8 2 31 0 - GAMG Prol-col 2 1.0 3.0796e+00 1.0 0.00e+00 0.0 1.8e+02 6.1e+02 1.7e+02 9 0 8 1 27 9 0 8 1 28 0 - GAMG Prol-lift 2 1.0 1.9993e-01 1.0 0.00e+00 0.0 1.2e+01 1.7e+04 1.0e+01 1 0 1 1 2 1 0 1 1 2 0 - PCGAMGOptProl 2 1.0 1.7852e+00 1.0 2.07e+07 1.1 1.9e+02 8.1e+03 8.2e+01 5 10 8 10 13 5 10 8 10 13 34 - GAMG smooth 2 1.0 5.7564e-01 1.0 7.01e+06 1.1 4.8e+01 1.9e+04 2.6e+01 2 3 2 6 4 2 3 2 6 4 35 - PCGAMGCreateL 2 1.0 2.4359e+00 1.0 6.02e+07 1.2 1.2e+02 5.3e+04 7.7e+01 7 26 5 39 12 7 26 5 39 13 66 - GAMG PtAP 2 1.0 2.3369e+00 1.0 6.02e+07 1.2 9.6e+01 6.2e+04 2.4e+01 7 26 4 37 4 7 26 4 37 4 69 - GAMG Reduce 1 1.0 9.9152e-02 1.0 0.00e+00 0.0 2.5e+01 1.7e+04 5.3e+01 0 0 1 3 8 0 0 1 3 9 0 -PCGAMG Gal l00 1 1.0 1.9170e+00 1.0 3.52e+07 1.0 4.8e+01 8.0e+04 1.2e+01 6 17 2 24 2 6 17 2 24 2 55 -PCGAMG Opt l00 1 1.0 3.8340e-01 1.0 5.07e+06 1.0 2.4e+01 3.1e+04 1.0e+01 1 2 1 5 2 1 2 1 5 2 39 -PCGAMG Gal l01 1 1.0 4.2004e-01 1.0 2.52e+07 1.7 4.8e+01 4.4e+04 1.2e+01 1 9 2 13 2 1 9 2 13 2 131 -PCGAMG Opt l01 1 1.0 7.6049e-02 1.4 1.50e+06 1.5 2.4e+01 7.2e+03 1.0e+01 0 1 1 1 2 0 1 1 1 2 47 -PCSetUp 2 1.0 1.0447e+01 1.0 8.11e+07 1.2 8.0e+02 1.1e+04 5.0e+02 31 37 34 53 79 31 37 34 53 81 22 -PCSetUpOnBlocks 21 1.0 2.9856e-02 84.9 7.16e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 240 -PCApply 21 1.0 3.0439e+00 1.0 1.17e+08 1.1 1.4e+03 4.0e+03 6.0e+00 9 54 59 34 1 9 54 59 34 1 111 +BuildTwoSided 103 1.0 1.2168e-01 2.5 0.00e+00 0.0 1.4e+02 4.0e+00 1.0e+02 1 0 6 0 16 1 0 6 0 17 0 +BuildTwoSidedF 86 1.0 1.2118e-01 2.5 0.00e+00 0.0 1.1e+02 4.0e+04 8.6e+01 1 0 5 26 14 1 0 5 26 14 0 +MatMult 217 1.0 2.9088e-01 1.0 1.23e+08 1.1 1.3e+03 5.5e+03 2.0e+00 2 55 55 42 0 2 55 55 42 0 1221 +MatMultAdd 44 1.0 5.0741e-02 1.4 1.05e+07 1.1 1.8e+02 1.4e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 596 +MatMultTranspose 44 1.0 4.2571e-02 1.1 1.05e+07 1.1 1.9e+02 1.4e+03 2.0e+00 0 5 8 1 0 0 5 8 1 0 711 +MatSolve 22 0.0 4.8429e-03 0.0 2.42e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 499 +MatLUFactorSym 1 1.0 2.8685e-03 137.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatLUFactorNum 1 1.0 5.4546e-03 1969.2 7.25e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1329 +MatConvert 1 1.0 8.2403e-04 1.3 0.00e+00 0.0 1.2e+01 7.0e+02 1.0e+00 0 0 1 0 0 0 0 1 0 0 0 +MatScale 4 1.0 1.3712e-03 1.1 4.75e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1002 +MatResidual 44 1.0 4.9912e-02 1.0 2.40e+07 1.1 2.6e+02 5.3e+03 0.0e+00 0 11 11 8 0 0 11 11 8 0 1378 +MatAssemblyBegin 59 1.0 1.5385e-01 1.7 0.00e+00 0.0 1.1e+02 4.0e+04 3.0e+01 1 0 5 26 5 1 0 5 26 5 0 +MatAssemblyEnd 59 1.0 1.1440e-01 1.1 9.65e+04 1.7 0.0e+00 0.0e+00 9.6e+01 1 0 0 0 15 1 0 0 0 16 2 +MatGetRowIJ 1 0.0 7.2151e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatCreateSubMat 2 1.0 1.0671e-02 1.0 0.00e+00 0.0 1.0e+01 4.4e+04 2.8e+01 0 0 0 3 4 0 0 0 3 5 0 +MatGetOrdering 1 0.0 1.7578e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatCoarsen 2 1.0 1.5104e-02 1.0 1.39e+05 1.0 2.4e+02 7.3e+02 9.7e+01 0 0 10 1 15 0 0 10 1 16 27 +MatZeroEntries 3 1.0 9.0838e-04 3.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 6 1.5 4.9326e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 +MatAXPY 4 1.0 3.0618e-02 1.3 1.14e+05 1.0 0.0e+00 0.0e+00 1.2e+01 0 0 0 0 2 0 0 0 0 2 11 +MatTranspose 10 1.0 1.3384e-02 1.1 0.00e+00 0.0 9.0e+01 2.1e+03 3.2e+01 0 0 4 1 5 0 0 4 1 5 0 +MatMatMultSym 9 1.0 1.1925e-01 1.1 0.00e+00 0.0 5.1e+01 1.2e+04 2.8e+01 1 0 2 3 4 1 0 2 3 5 0 +MatMatMultNum 3 1.0 2.1484e-02 1.0 6.55e+06 1.1 1.5e+01 2.5e+04 3.0e+00 0 3 1 2 0 0 3 1 2 0 874 +MatPtAPSymbolic 3 1.0 2.6779e-01 1.0 0.00e+00 0.0 9.9e+01 3.6e+04 2.1e+01 2 0 4 20 3 2 0 4 20 3 0 +MatPtAPNumeric 3 1.0 2.7614e-01 1.0 6.30e+07 1.3 3.0e+01 9.7e+04 1.5e+01 2 25 1 17 2 2 25 1 17 2 594 +MatGetLocalMat 9 1.0 1.0092e-02 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatGetBrAoCol 9 1.0 3.1112e-02 1.3 0.00e+00 0.0 1.2e+02 3.1e+04 1.0e+00 0 0 5 22 0 0 0 5 22 0 0 +VecMDot 20 1.0 3.6431e-03 3.2 1.18e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 962 +VecTDot 42 1.0 2.1156e-03 1.7 8.56e+05 1.0 0.0e+00 0.0e+00 4.2e+01 0 0 0 0 7 0 0 0 0 7 1191 +VecNorm 44 1.0 3.0520e-03 1.1 6.84e+05 1.0 0.0e+00 0.0e+00 4.4e+01 0 0 0 0 7 0 0 0 0 7 662 +VecScale 22 1.0 1.1262e-04 1.1 1.18e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3113 +VecCopy 136 1.0 1.1004e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 203 1.0 6.6001e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 44 1.0 1.4902e-03 1.2 8.78e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1734 +VecAYPX 284 1.0 5.8803e-03 1.2 2.30e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1158 +VecAXPBYCZ 88 1.0 1.8556e-03 1.1 2.36e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 3779 +VecMAXPY 22 1.0 6.6942e-04 1.1 1.40e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 6189 +VecAssemblyBegin 57 1.0 7.9447e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 9 0 0 0 0 9 0 +VecAssemblyEnd 57 1.0 8.5542e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecPointwiseMult 198 1.0 5.9469e-03 1.2 1.06e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 531 +VecScatterBegin 363 1.0 6.0214e-03 1.1 0.00e+00 0.0 1.9e+03 4.2e+03 8.0e+00 0 0 79 46 1 0 0 79 46 1 0 +VecScatterEnd 363 1.0 4.6085e-02 1.4 1.47e+04 2.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1 +VecNormalize 22 1.0 2.1078e-03 3.0 3.54e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 3 0 0 0 0 4 499 +SFSetGraph 35 1.0 2.8431e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 17 1.0 1.4940e-03 1.2 0.00e+00 0.0 1.6e+02 5.0e+02 1.7e+01 0 0 7 0 3 0 0 7 0 3 0 +SFBcastBegin 15 1.0 1.3994e-04 1.2 0.00e+00 0.0 9.0e+01 6.4e+02 0.0e+00 0 0 4 0 0 0 0 4 0 0 0 +SFBcastEnd 15 1.0 1.0710e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFReduceBegin 4 1.0 8.4247e-05 1.1 0.00e+00 0.0 1.8e+01 5.5e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 +SFReduceEnd 4 1.0 4.5115e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFPack 382 1.0 2.2673e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 382 1.0 3.0911e-04 1.2 1.47e+04 2.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 102 +KSPSetUp 7 1.0 6.4826e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 +KSPSolve 1 1.0 3.7344e-01 1.0 1.43e+08 1.1 1.6e+03 4.6e+03 7.0e+01 2 64 65 41 11 2 64 65 41 11 1118 +KSPGMRESOrthog 20 1.0 4.2323e-03 2.5 2.36e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 1657 +PCSetUp_GAMG+ 1 1.0 8.0602e-01 1.0 8.40e+07 1.2 8.0e+02 1.1e+04 5.0e+02 5 35 34 52 79 5 35 34 52 81 279 + PCGAMGCreateG 2 1.0 4.5807e-02 1.0 4.97e+04 1.0 6.0e+01 2.9e+03 4.4e+01 0 0 3 1 7 0 0 3 1 7 3 + GAMG Coarsen 2 1.0 1.6185e-02 1.0 1.39e+05 1.0 2.4e+02 7.3e+02 9.7e+01 0 0 10 1 15 0 0 10 1 16 25 + GAMG MIS/Agg 2 1.0 1.5138e-02 1.0 1.39e+05 1.0 2.4e+02 7.3e+02 9.7e+01 0 0 10 1 15 0 0 10 1 16 27 + PCGAMGProl 2 1.0 1.9275e-02 1.0 0.00e+00 0.0 1.9e+02 1.8e+03 1.9e+02 0 0 8 2 30 0 0 8 2 30 0 + GAMG Prol-col 2 1.0 6.9502e-03 1.0 0.00e+00 0.0 1.8e+02 6.6e+02 1.7e+02 0 0 8 1 27 0 0 8 1 27 0 + GAMG Prol-lift 2 1.0 1.1299e-02 1.0 0.00e+00 0.0 1.2e+01 1.8e+04 1.0e+01 0 0 1 1 2 0 0 1 1 2 0 + PCGAMGOptProl 2 1.0 1.8228e-01 1.0 2.09e+07 1.1 1.9e+02 8.6e+03 8.2e+01 1 9 8 9 13 1 9 8 9 13 331 + GAMG smooth 2 1.0 1.2887e-01 1.1 7.09e+06 1.1 4.8e+01 2.0e+04 2.6e+01 1 3 2 6 4 1 3 2 6 4 158 + PCGAMGCreateL 2 1.0 5.4804e-01 1.0 6.29e+07 1.3 1.2e+02 5.6e+04 7.7e+01 3 25 5 39 12 3 25 5 39 12 299 + GAMG PtAP 2 1.0 5.3634e-01 1.0 6.29e+07 1.3 9.6e+01 6.6e+04 2.4e+01 3 25 4 36 4 3 25 4 36 4 305 + GAMG Reduce 1 1.0 1.1936e-02 1.0 0.00e+00 0.0 2.5e+01 1.9e+04 5.3e+01 0 0 1 3 8 0 0 1 3 9 0 +PCGAMG Gal l00 1 1.0 3.5708e-01 1.0 3.66e+07 1.0 4.8e+01 8.5e+04 1.2e+01 2 16 2 23 2 2 16 2 23 2 299 +PCGAMG Opt l00 1 1.0 9.0717e-02 1.0 5.11e+06 1.0 2.4e+01 3.3e+04 1.0e+01 1 2 1 4 2 1 2 1 4 2 166 +PCGAMG Gal l01 1 1.0 1.7934e-01 1.0 2.63e+07 1.8 4.8e+01 4.7e+04 1.2e+01 1 9 2 13 2 1 9 2 13 2 317 +PCGAMG Opt l01 1 1.0 8.4263e-03 1.0 1.61e+06 1.6 2.4e+01 8.3e+03 1.0e+01 0 1 1 1 2 0 1 1 1 2 445 +PCSetUp 2 1.0 8.1460e-01 1.0 8.40e+07 1.2 8.0e+02 1.1e+04 5.0e+02 5 36 34 52 79 5 36 34 52 81 285 +PCSetUpOnBlocks 22 1.0 8.7236e-03 36.7 7.25e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 831 +PCApply 22 1.0 3.2892e-01 1.0 1.23e+08 1.1 1.4e+03 4.3e+03 6.0e+00 2 55 60 35 1 2 55 60 35 1 1088 --- Event Stage 1: Unknown @@ -2229,9 +2272,9 @@ --- Event Stage 1: Unknown ======================================================================================================================== -Average time to get PetscTime(): 7.4e-08 -Average time for MPI_Barrier(): 3.7392e-06 -Average time for zero size MPI_Send(): 4.60267e-06 +Average time to get PetscTime(): 6.58e-08 +Average time for MPI_Barrier(): 2.7264e-06 +Average time for zero size MPI_Send(): 1.66333e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity @@ -2294,63 +2337,63 @@ Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: weak Option left: name:-mg_levels_esteig_ksp_type value: cg -2023-05-10 15:43:42.764 ( 49.081s) [RANK: 0 ] loguru.cpp:526 INFO| atexit +2024-06-13 00:15:22.788 ( 17.228s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== elasticity strong scaling (3 processes with ndofs=30000) ==== -2023-05-10 15:43:44.441 ( 0.852s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks -2023-05-10 15:43:44.441 ( 0.852s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph -2023-05-10 15:43:44.441 ( 0.852s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph -2023-05-10 15:43:44.552 ( 0.963s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph -2023-05-10 15:43:44.575 ( 0.986s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:44.594 ( 1.005s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:44.595 ( 1.006s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 -2023-05-10 15:43:44.729 ( 1.140s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 66332, non-local: 962) -2023-05-10 15:43:44.729 ( 1.140s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH -2023-05-10 15:43:58.712 ( 15.123s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 -2023-05-10 15:43:58.750 ( 15.161s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -2023-05-10 15:43:58.821 ( 15.232s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph -2023-05-10 15:43:58.945 ( 15.356s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(119) 1320-16923 - -2023-05-10 15:43:58.962 ( 15.373s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology -2023-05-10 15:43:58.990 ( 15.401s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 -2023-05-10 15:43:59.023 ( 15.434s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -2023-05-10 15:43:59.257 ( 15.668s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:59.266 ( 15.677s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:59.266 ( 15.677s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:59.266 ( 15.677s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:59.269 ( 15.680s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:59.269 ( 15.680s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:59.269 ( 15.680s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 -2023-05-10 15:43:59.269 ( 15.680s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -2023-05-10 15:43:59.270 ( 15.681s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:59.270 ( 15.681s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:59.286 ( 15.697s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 -2023-05-10 15:43:59.286 ( 15.697s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -2023-05-10 15:43:59.286 ( 15.697s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 -2023-05-10 15:43:59.286 ( 15.697s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:59.290 ( 15.701s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:59.291 ( 15.701s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 -2023-05-10 15:43:59.304 ( 15.715s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 +2024-06-13 00:15:23.460 ( 0.356s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks +2024-06-13 00:15:23.460 ( 0.356s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph +2024-06-13 00:15:23.460 ( 0.356s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph +2024-06-13 00:15:23.493 ( 0.389s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph +2024-06-13 00:15:23.512 ( 0.408s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:23.513 ( 0.409s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:23.513 ( 0.409s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 +2024-06-13 00:15:23.523 ( 0.419s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 66332, non-local: 962) +2024-06-13 00:15:23.523 ( 0.419s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH +2024-06-13 00:15:34.345 ( 11.241s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 +2024-06-13 00:15:34.367 ( 11.263s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +2024-06-13 00:15:34.418 ( 11.314s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph +2024-06-13 00:15:34.486 ( 11.382s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(120) 1409-16652 + +2024-06-13 00:15:34.500 ( 11.396s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology +2024-06-13 00:15:34.511 ( 11.407s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 +2024-06-13 00:15:34.543 ( 11.439s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +2024-06-13 00:15:34.820 ( 11.716s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:34.847 ( 11.743s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:34.879 ( 11.775s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:34.911 ( 11.807s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:34.958 ( 11.854s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:34.971 ( 11.867s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:35.003 ( 11.899s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 +2024-06-13 00:15:35.011 ( 11.907s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +2024-06-13 00:15:35.075 ( 11.971s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:35.091 ( 11.987s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:35.131 ( 12.027s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 +2024-06-13 00:15:35.143 ( 12.039s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +2024-06-13 00:15:35.143 ( 12.039s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 +2024-06-13 00:15:35.167 ( 12.063s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:35.183 ( 12.079s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:35.183 ( 12.079s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (24x19x19) to be refined 0 times -2023-05-10 15:43:59.319 ( 15.730s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:59.329 ( 15.740s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:59.483 ( 15.894s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:59.483 ( 15.894s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:59.485 ( 15.896s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 -2023-05-10 15:43:59.485 ( 15.896s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. -2023-05-10 15:43:59.487 ( 15.898s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 -2023-05-10 15:43:59.490 ( 15.901s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:59.490 ( 15.901s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:59.499 ( 15.910s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:59.499 ( 15.910s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:59.499 ( 15.910s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 -2023-05-10 15:43:59.499 ( 15.910s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -2023-05-10 15:43:59.500 ( 15.911s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:43:59.500 ( 15.911s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:43:59.501 ( 15.912s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 -2023-05-10 15:43:59.501 ( 15.912s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 -2023-05-10 15:43:59.501 ( 15.912s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 -2023-05-10 15:43:59.502 ( 15.913s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 -2023-05-10 15:43:59.565 ( 15.976s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 205 to 537 +2024-06-13 00:15:35.272 ( 12.167s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 +2024-06-13 00:15:35.313 ( 12.209s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:35.327 ( 12.223s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:35.487 ( 12.383s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:35.503 ( 12.399s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:35.538 ( 12.434s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 +2024-06-13 00:15:35.538 ( 12.434s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. +2024-06-13 00:15:35.550 ( 12.446s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 +2024-06-13 00:15:35.553 ( 12.449s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:35.579 ( 12.475s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:35.615 ( 12.511s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:35.643 ( 12.539s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:35.679 ( 12.575s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 +2024-06-13 00:15:35.691 ( 12.587s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +2024-06-13 00:15:35.791 ( 12.687s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:35.819 ( 12.715s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:35.880 ( 12.776s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 +2024-06-13 00:15:35.881 ( 12.777s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 +2024-06-13 00:15:35.881 ( 12.777s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 +2024-06-13 00:15:35.882 ( 12.778s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 +2024-06-13 00:15:35.960 ( 12.856s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 199 to 549 ---------------------------------------------------------------- Test problem summary @@ -2365,7 +2408,7 @@ Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- -2023-05-10 15:44:00.119 ( 16.530s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. +2024-06-13 00:15:36.322 ( 13.218s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -2383,7 +2426,7 @@ AGG specific options Number of levels to square graph 1 Number smoothing steps 1 - Complexity: grid = 1.0666 operator = 1.26323 + Complexity: grid = 1.0674 operator = 1.27192 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly @@ -2408,33 +2451,33 @@ tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd - factor fill ratio given 5., needed 1.05589 + factor fill ratio given 5., needed 1.05488 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 package used to perform factorization: petsc - total: nonzeros=50328, allocated nonzeros=50328 - using I-node routines: found 58 nodes, limit used is 5 + total: nonzeros=49824, allocated nonzeros=49824 + using I-node routines: found 52 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 - total: nonzeros=47664, allocated nonzeros=47664 + total: nonzeros=47232, allocated nonzeros=47232 total number of mallocs used during MatSetValues calls=0 - using I-node routines: found 71 nodes, limit used is 5 + using I-node routines: found 68 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=228, cols=228, bs=6 - total: nonzeros=47664, allocated nonzeros=47664 + total: nonzeros=47232, allocated nonzeros=47232 total number of mallocs used during MatSetValues calls=0 - using I-node (on process 0) routines: found 71 nodes, limit used is 5 + using I-node (on process 0) routines: found 68 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev - eigenvalue targets used: min 0.225083, max 2.47591 - eigenvalues provided (min 9.67182e-07, max 2.25083) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.248092, max 2.72901 + eigenvalues provided (min 1.84365e-06, max 2.48092) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2445,17 +2488,17 @@ linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=1770, cols=1770, bs=6 - total: nonzeros=281772, allocated nonzeros=281772 + rows=1794, cols=1794, bs=6 + total: nonzeros=293076, allocated nonzeros=293076 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 178 nodes, limit used is 5 + using I-node (on process 0) routines: found 182 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev - eigenvalue targets used: min 0.258314, max 2.84145 - eigenvalues provided (min 0.0694752, max 2.58314) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.257801, max 2.83581 + eigenvalues provided (min 0.0738042, max 2.57801) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2470,7 +2513,7 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3395 nodes, limit used is 5 + using I-node (on process 0) routines: found 3364 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes @@ -2479,49 +2522,49 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3395 nodes, limit used is 5 + using I-node (on process 0) routines: found 3364 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- -Build BoxMesh | 1 14.873213 14.873213 -Build dofmap data | 2 0.008078 0.016157 -Build sparsity | 1 0.025458 0.025458 -Compute connectivity 2-3 | 1 0.000873 0.000873 -Compute dof reordering map | 2 0.000259 0.000518 -Compute entities of dim = 2 | 1 0.181245 0.181245 -Compute graph partition (SCOTCH) | 1 13.951200 13.951200 -Compute local part of mesh dual graph | 2 0.112277 0.224553 -Compute local-to-local map | 1 0.000589 0.000589 -Compute non-local part of mesh dual graph | 1 0.201877 0.201877 -Compute-local-to-global links for global/local adjacency list | 1 0.000472 0.000472 -Distribute AdjacencyList nodes to destination ranks | 1 0.140453 0.140453 -Distribute row-wise data (scalable) | 1 0.017466 0.017466 -Extract partition boundaries from SCOTCH graph | 1 0.000907 0.000907 -GPS: create_level_structure | 5 0.006667 0.015160 -Get SCOTCH graph data | 1 0.000027 0.000027 -Gibbs-Poole-Stockmeyer ordering | 1 0.030115 0.030115 -Init MPI | 1 0.710174 0.710174 -Init PETSc | 1 0.171797 0.171797 -Init dofmap from element dofmap | 2 0.002018 0.004036 -Init logging | 1 0.000073 0.000073 -PETSc Krylov solver | 1 6.663605 6.663605 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.030469 0.030469 -SCOTCH: call SCOTCH_dgraphHalo | 1 0.063858 0.063858 -SCOTCH: call SCOTCH_dgraphPart | 1 13.887147 13.887147 -SparsityPattern::assemble | 1 0.023145 0.023145 -Topology: create | 1 0.311169 0.311169 -Topology: determine shared index ownership | 1 0.219857 0.219857 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.014258 0.014258 -ZZZ Assemble matrix | 1 0.439757 0.439757 -ZZZ Assemble vector | 1 0.016085 0.016085 -ZZZ Create Mesh | 1 14.873344 14.873344 -ZZZ Create RHS function | 1 0.040769 0.040769 -ZZZ Create boundary conditions | 1 0.004176 0.004176 -ZZZ Create facets and facet->cell connectivity | 1 0.182230 0.182230 -ZZZ Create forms | 1 0.000135 0.000135 -ZZZ Create near-nullspace | 1 0.047938 0.047938 -ZZZ FunctionSpace | 1 0.014198 0.014198 -ZZZ Solve | 1 6.679505 6.679505 +Build BoxMesh | 1 11.817823 11.817823 +Build dofmap data | 2 0.241458 0.482917 +Build sparsity | 1 0.029326 0.029326 +Compute connectivity 2-3 | 1 0.010059 0.010059 +Compute dof reordering map | 2 0.000247 0.000494 +Compute entities of dim = 2 | 1 0.273769 0.273769 +Compute graph partition (SCOTCH) | 1 10.806566 10.806566 +Compute local part of mesh dual graph | 2 0.057950 0.115900 +Compute local-to-local map | 1 0.000520 0.000520 +Compute non-local part of mesh dual graph | 1 0.030174 0.030174 +Compute-local-to-global links for global/local adjacency list | 1 0.001193 0.001193 +Distribute AdjacencyList nodes to destination ranks | 1 0.100632 0.100632 +Distribute row-wise data (scalable) | 1 0.116506 0.116506 +Extract partition boundaries from SCOTCH graph | 1 0.001423 0.001423 +GPS: create_level_structure | 2 0.000615 0.002461 +Get SCOTCH graph data | 1 0.000031 0.000031 +Gibbs-Poole-Stockmeyer ordering | 1 0.011821 0.011821 +Init MPI | 1 0.352187 0.352187 +Init PETSc | 1 0.008623 0.008623 +Init dofmap from element dofmap | 2 0.002322 0.004643 +Init logging | 1 0.000058 0.000058 +PETSc Krylov solver | 1 3.382852 3.382852 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.000595 0.000595 +SCOTCH: call SCOTCH_dgraphHalo | 1 0.035872 0.035872 +SCOTCH: call SCOTCH_dgraphPart | 1 10.770569 10.770569 +SparsityPattern::assemble | 1 0.028106 0.028106 +Topology: create | 1 0.486911 0.486911 +Topology: determine shared index ownership | 1 0.183157 0.183157 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.003335 0.003335 +ZZZ Assemble matrix | 1 0.301475 0.301475 +ZZZ Assemble vector | 1 0.028038 0.028038 +ZZZ Create Mesh | 1 11.818007 11.818007 +ZZZ Create RHS function | 1 0.045105 0.045105 +ZZZ Create boundary conditions | 1 0.014905 0.014905 +ZZZ Create facets and facet->cell connectivity | 1 0.277098 0.277098 +ZZZ Create forms | 1 0.000165 0.000165 +ZZZ Create near-nullspace | 1 0.025428 0.025428 +ZZZ FunctionSpace | 1 0.324710 0.324710 +ZZZ Solve | 1 3.391250 3.391250 *** Number of Krylov iterations: 21 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** @@ -2530,17 +2573,17 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos1-amd64 with 3 processors, by pbuilder1 Wed May 10 15:44:06 2023 +/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Thu Jun 13 00:15:39 2024 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total -Time (sec): 2.241e+01 1.000 2.240e+01 +Time (sec): 1.629e+01 1.001 1.629e+01 Objects: 4.630e+02 1.004 4.617e+02 -Flops: 2.205e+08 1.095 2.098e+08 6.294e+08 -Flops/sec: 9.840e+06 1.094 9.364e+06 2.809e+07 -MPI Msg Count: 8.190e+02 1.044 7.967e+02 2.390e+03 -MPI Msg Len (bytes): 6.739e+06 1.486 6.798e+03 1.625e+07 -MPI Reductions: 6.370e+02 1.000 +Flops: 2.295e+08 1.141 2.121e+08 6.363e+08 +Flops/sec: 1.409e+07 1.141 1.302e+07 3.907e+07 +MPI Msg Count: 8.170e+02 1.044 7.947e+02 2.384e+03 +MPI Msg Len (bytes): 6.540e+06 1.484 6.692e+03 1.595e+07 +MPI Reductions: 6.360e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops @@ -2548,7 +2591,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 2.2404e+01 100.0% 6.2936e+08 100.0% 2.390e+03 100.0% 6.798e+03 100.0% 6.190e+02 97.2% + 0: Main Stage: 1.6285e+01 100.0% 6.3630e+08 100.0% 2.384e+03 100.0% 6.692e+03 100.0% 6.180e+02 97.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -2572,79 +2615,79 @@ --- Event Stage 0: Main Stage -BuildTwoSided 103 1.0 6.4609e-01 3.3 0.00e+00 0.0 1.4e+02 4.0e+00 1.0e+02 2 0 6 0 16 2 0 6 0 17 0 -BuildTwoSidedF 86 1.0 5.8549e-01 4.2 0.00e+00 0.0 1.1e+02 3.6e+04 8.6e+01 2 0 5 25 14 2 0 5 25 14 0 -MatMult 217 1.0 2.4146e+00 1.1 1.23e+08 1.1 1.3e+03 5.2e+03 2.0e+00 10 56 55 42 0 10 56 55 42 0 145 -MatMultAdd 44 1.0 3.8821e-01 1.3 1.02e+07 1.1 1.8e+02 1.3e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 76 -MatMultTranspose 44 1.0 4.9741e-01 1.1 1.02e+07 1.1 1.9e+02 1.2e+03 2.0e+00 2 5 8 1 0 2 5 8 1 0 59 -MatSolve 22 0.0 5.5023e-03 0.0 2.21e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 402 -MatLUFactorSym 1 1.0 2.9223e-03 125.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatLUFactorNum 1 1.0 2.6415e-02 6369.7 7.00e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 265 -MatConvert 1 1.0 7.9600e-04 1.1 0.00e+00 0.0 1.2e+01 6.7e+02 1.0e+00 0 0 1 0 0 0 0 1 0 0 0 -MatScale 4 1.0 1.1090e-03 1.1 4.62e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1209 -MatResidual 44 1.0 5.3474e-01 1.0 2.38e+07 1.1 2.6e+02 5.0e+03 0.0e+00 2 11 11 8 0 2 11 11 8 0 126 -MatAssemblyBegin 59 1.0 5.3951e-01 4.4 0.00e+00 0.0 1.1e+02 3.6e+04 3.0e+01 1 0 5 25 5 1 0 5 25 5 0 -MatAssemblyEnd 59 1.0 4.6677e-01 1.1 9.85e+04 2.2 0.0e+00 0.0e+00 9.6e+01 2 0 0 0 15 2 0 0 0 16 0 -MatGetRowIJ 1 0.0 6.8187e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCreateSubMat 2 1.0 1.3099e-01 1.1 0.00e+00 0.0 1.0e+01 4.2e+04 2.8e+01 1 0 0 3 4 1 0 0 3 5 0 -MatGetOrdering 1 0.0 1.7909e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCoarsen 2 1.0 1.2839e-01 1.0 1.38e+05 1.0 2.4e+02 7.0e+02 9.7e+01 1 0 10 1 15 1 0 10 1 16 3 -MatZeroEntries 3 1.0 4.5925e-03 23.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 6 1.5 6.7376e-02 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 -MatAXPY 4 1.0 7.3251e-02 1.2 1.14e+05 1.0 0.0e+00 0.0e+00 1.2e+01 0 0 0 0 2 0 0 0 0 2 5 -MatTranspose 10 1.0 2.6871e-02 1.1 0.00e+00 0.0 9.0e+01 2.0e+03 3.2e+01 0 0 4 1 5 0 0 4 1 5 0 -MatMatMultSym 9 1.0 3.5860e-01 1.1 0.00e+00 0.0 5.1e+01 1.1e+04 2.8e+01 2 0 2 4 4 2 0 2 4 5 0 -MatMatMultNum 3 1.0 3.8626e-02 1.3 6.50e+06 1.1 1.5e+01 2.4e+04 3.0e+00 0 3 1 2 0 0 3 1 2 0 477 -MatPtAPSymbolic 3 1.0 6.8637e-01 1.0 0.00e+00 0.0 9.9e+01 3.3e+04 2.1e+01 3 0 4 20 3 3 0 4 20 3 0 -MatPtAPNumeric 3 1.0 8.3037e-01 1.0 5.78e+07 1.3 3.0e+01 8.5e+04 1.5e+01 4 24 1 16 2 4 24 1 16 2 185 -MatGetLocalMat 9 1.0 4.9133e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatGetBrAoCol 9 1.0 5.6185e-02 1.1 0.00e+00 0.0 1.2e+02 2.9e+04 1.0e+00 0 0 5 22 0 0 0 5 22 0 0 -VecMDot 20 1.0 7.9265e-02 1.8 1.18e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 44 -VecTDot 42 1.0 4.3026e-01 1.1 8.55e+05 1.0 0.0e+00 0.0e+00 4.2e+01 2 0 0 0 7 2 0 0 0 7 6 -VecNorm 44 1.0 3.6558e-01 1.5 6.84e+05 1.0 0.0e+00 0.0e+00 4.4e+01 1 0 0 0 7 1 0 0 0 7 6 -VecScale 22 1.0 2.4157e-04 1.1 1.18e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1447 -VecCopy 136 1.0 1.4196e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 203 1.0 6.9200e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 44 1.0 2.2436e-03 1.2 8.77e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1152 -VecAYPX 284 1.0 1.4749e-02 2.1 2.29e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 460 -VecAXPBYCZ 88 1.0 2.7884e-03 1.1 2.36e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2507 -VecMAXPY 22 1.0 1.2096e-03 1.2 1.39e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 3414 -VecAssemblyBegin 57 1.0 8.4147e-02 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 9 0 0 0 0 9 0 -VecAssemblyEnd 57 1.0 1.6534e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecPointwiseMult 198 1.0 1.8041e-02 3.2 1.06e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 174 -VecScatterBegin 363 1.0 1.0655e-01 1.2 0.00e+00 0.0 1.9e+03 4.0e+03 8.0e+00 0 0 79 46 1 0 0 79 46 1 0 -VecScatterEnd 363 1.0 2.7515e+00 1.0 1.36e+04 2.6 0.0e+00 0.0e+00 0.0e+00 12 0 0 0 0 12 0 0 0 0 0 -VecNormalize 22 1.0 5.2392e-02 1.2 3.54e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 3 0 0 0 0 4 20 -SFSetGraph 35 1.0 2.8575e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 17 1.0 1.0939e-01 1.2 0.00e+00 0.0 1.6e+02 4.7e+02 1.7e+01 0 0 7 0 3 0 0 7 0 3 0 -SFBcastBegin 15 1.0 1.3984e-04 1.1 0.00e+00 0.0 9.0e+01 6.0e+02 0.0e+00 0 0 4 0 0 0 0 4 0 0 0 -SFBcastEnd 15 1.0 9.7606e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFReduceBegin 4 1.0 8.5457e-05 1.2 0.00e+00 0.0 1.8e+01 5.2e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 -SFReduceEnd 4 1.0 3.3471e-03 50.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFPack 382 1.0 2.9203e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 382 1.0 4.2392e-03 4.7 1.36e+04 2.6 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 7 -KSPSetUp 7 1.0 6.0945e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 -KSPSolve 1 1.0 3.8067e+00 1.0 1.40e+08 1.1 1.6e+03 4.4e+03 7.0e+01 17 65 65 42 11 17 65 65 42 11 108 -KSPGMRESOrthog 20 1.0 8.0514e-02 1.8 2.36e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 87 -PCSetUp_GAMG+ 1 1.0 2.6927e+00 1.0 7.87e+07 1.2 8.0e+02 1.0e+04 5.0e+02 12 34 34 52 79 12 34 34 52 81 79 - PCGAMGCreateG 2 1.0 1.1598e-01 1.0 5.02e+04 1.0 6.0e+01 2.8e+03 4.4e+01 1 0 3 1 7 1 0 3 1 7 1 - GAMG Coarsen 2 1.0 1.2942e-01 1.0 1.38e+05 1.0 2.4e+02 7.0e+02 9.7e+01 1 0 10 1 15 1 0 10 1 16 3 - GAMG MIS/Agg 2 1.0 1.2843e-01 1.0 1.38e+05 1.0 2.4e+02 7.0e+02 9.7e+01 1 0 10 1 15 1 0 10 1 16 3 - PCGAMGProl 2 1.0 3.1020e-01 1.0 0.00e+00 0.0 1.9e+02 1.8e+03 1.9e+02 1 0 8 2 30 1 0 8 2 30 0 - GAMG Prol-col 2 1.0 2.3545e-01 1.0 0.00e+00 0.0 1.8e+02 6.6e+02 1.7e+02 1 0 8 1 27 1 0 8 1 27 0 - GAMG Prol-lift 2 1.0 7.4295e-02 1.1 0.00e+00 0.0 1.2e+01 1.8e+04 1.0e+01 0 0 1 1 2 0 0 1 1 2 0 - PCGAMGOptProl 2 1.0 5.6146e-01 1.0 2.08e+07 1.1 1.9e+02 8.1e+03 8.2e+01 2 9 8 10 13 2 9 8 10 13 106 - GAMG smooth 2 1.0 3.2833e-01 1.0 7.02e+06 1.1 4.8e+01 1.9e+04 2.6e+01 1 3 2 6 4 1 3 2 6 4 61 - PCGAMGCreateL 2 1.0 1.5771e+00 1.0 5.77e+07 1.3 1.2e+02 5.1e+04 7.7e+01 7 24 5 38 12 7 24 5 38 12 97 - GAMG PtAP 2 1.0 1.4216e+00 1.0 5.77e+07 1.3 9.6e+01 5.9e+04 2.4e+01 6 24 4 35 4 6 24 4 35 4 108 - GAMG Reduce 1 1.0 1.5553e-01 1.0 0.00e+00 0.0 2.5e+01 1.8e+04 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55 56 44 0 8 55 56 44 0 260 +MatMultAdd 44 1.0 1.4519e-01 1.3 1.07e+07 1.1 1.8e+02 1.2e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 206 +MatMultTranspose 44 1.0 1.8294e-01 1.1 1.07e+07 1.1 1.9e+02 1.2e+03 2.0e+00 1 5 8 1 0 1 5 8 1 0 164 +MatSolve 22 0.0 5.2341e-03 0.0 2.19e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 418 +MatLUFactorSym 1 1.0 3.2775e-03 157.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatLUFactorNum 1 1.0 1.3725e-02 4520.8 7.06e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 515 +MatConvert 1 1.0 1.8385e-03 1.2 0.00e+00 0.0 1.2e+01 6.9e+02 1.0e+00 0 0 1 0 0 0 0 1 0 0 0 +MatScale 4 1.0 1.7302e-03 1.3 4.86e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 786 +MatResidual 44 1.0 2.2161e-01 1.1 2.43e+07 1.1 2.6e+02 5.0e+03 0.0e+00 1 11 11 8 0 1 11 11 8 0 307 +MatAssemblyBegin 59 1.0 3.0144e-01 1.4 0.00e+00 0.0 1.1e+02 3.4e+04 3.0e+01 2 0 5 24 5 2 0 5 24 5 0 +MatAssemblyEnd 59 1.0 1.4435e-01 1.1 8.85e+04 2.3 0.0e+00 0.0e+00 9.6e+01 1 0 0 0 15 1 0 0 0 16 1 +MatGetRowIJ 1 0.0 7.4520e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatCreateSubMat 2 1.0 2.6892e-02 1.0 0.00e+00 0.0 1.0e+01 4.3e+04 2.8e+01 0 0 0 3 4 0 0 0 3 5 0 +MatGetOrdering 1 0.0 1.7613e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatCoarsen 2 1.0 3.2909e-02 1.0 1.39e+05 1.0 2.3e+02 7.3e+02 9.6e+01 0 0 10 1 15 0 0 10 1 16 12 +MatZeroEntries 3 1.0 8.7764e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 6 1.5 8.1781e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 +MatAXPY 4 1.0 3.5324e-02 1.3 1.15e+05 1.0 0.0e+00 0.0e+00 1.2e+01 0 0 0 0 2 0 0 0 0 2 10 +MatTranspose 10 1.0 3.5691e-02 1.2 0.00e+00 0.0 9.0e+01 2.0e+03 3.2e+01 0 0 4 1 5 0 0 4 1 5 0 +MatMatMultSym 9 1.0 1.4481e-01 1.1 0.00e+00 0.0 5.1e+01 1.1e+04 2.8e+01 1 0 2 4 4 1 0 2 4 5 0 +MatMatMultNum 3 1.0 3.0902e-02 1.0 6.65e+06 1.1 1.5e+01 2.4e+04 3.0e+00 0 3 1 2 0 0 3 1 2 0 600 +MatPtAPSymbolic 3 1.0 4.4129e-01 1.0 0.00e+00 0.0 9.9e+01 3.1e+04 2.1e+01 3 0 4 19 3 3 0 4 19 3 0 +MatPtAPNumeric 3 1.0 5.5912e-01 1.0 6.31e+07 1.4 3.0e+01 7.7e+04 1.5e+01 3 25 1 15 2 3 25 1 15 2 281 +MatGetLocalMat 9 1.0 1.3915e-02 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatGetBrAoCol 9 1.0 2.4406e-02 2.2 0.00e+00 0.0 1.2e+02 2.9e+04 1.0e+00 0 0 5 21 0 0 0 5 21 0 0 +VecMDot 20 1.0 7.4416e-02 1.6 1.18e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 47 +VecTDot 42 1.0 1.0693e-01 1.3 8.48e+05 1.0 0.0e+00 0.0e+00 4.2e+01 1 0 0 0 7 1 0 0 0 7 24 +VecNorm 44 1.0 1.2912e-01 1.9 6.78e+05 1.0 0.0e+00 0.0e+00 4.4e+01 1 0 0 0 7 1 0 0 0 7 16 +VecScale 22 1.0 2.8591e-04 1.6 1.18e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1223 +VecCopy 136 1.0 9.3692e-03 5.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 203 1.0 1.0576e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 44 1.0 1.1854e-02 2.5 8.69e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 218 +VecAYPX 284 1.0 2.6806e-02 2.3 2.29e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 254 +VecAXPBYCZ 88 1.0 4.9343e-03 1.1 2.36e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1418 +VecMAXPY 22 1.0 2.1735e-03 1.2 1.40e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1902 +VecAssemblyBegin 57 1.0 8.8461e-03 14.9 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 9 0 0 0 0 9 0 +VecAssemblyEnd 57 1.0 1.0022e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecPointwiseMult 198 1.0 2.0947e-02 2.1 1.06e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 150 +VecScatterBegin 363 1.0 2.4740e-02 2.3 0.00e+00 0.0 1.9e+03 4.0e+03 8.0e+00 0 0 80 47 1 0 0 80 47 1 0 +VecScatterEnd 363 1.0 9.7286e-01 1.2 1.23e+04 2.1 0.0e+00 0.0e+00 0.0e+00 6 0 0 0 0 6 0 0 0 0 0 +VecNormalize 22 1.0 6.3950e-02 4.6 3.54e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 3 0 0 0 0 4 16 +SFSetGraph 35 1.0 2.6400e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 17 1.0 1.4615e-02 7.8 0.00e+00 0.0 1.6e+02 4.7e+02 1.7e+01 0 0 7 0 3 0 0 7 0 3 0 +SFBcastBegin 14 1.0 1.1929e-04 1.1 0.00e+00 0.0 8.4e+01 6.3e+02 0.0e+00 0 0 4 0 0 0 0 4 0 0 0 +SFBcastEnd 14 1.0 1.1839e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFReduceBegin 4 1.0 1.0016e-04 1.2 0.00e+00 0.0 1.8e+01 5.2e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 +SFReduceEnd 4 1.0 4.8200e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFPack 381 1.0 3.8368e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 381 1.0 4.7536e-03 8.7 1.23e+04 2.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 6 +KSPSetUp 7 1.0 1.3027e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 +KSPSolve 1 1.0 1.7302e+00 1.0 1.43e+08 1.1 1.6e+03 4.4e+03 7.0e+01 11 65 65 42 11 11 65 65 42 11 239 +KSPGMRESOrthog 20 1.0 7.6694e-02 1.5 2.36e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 91 +PCSetUp_GAMG+ 1 1.0 1.6426e+00 1.0 8.43e+07 1.3 8.0e+02 1.0e+04 5.0e+02 10 34 33 50 79 10 34 33 50 81 132 + PCGAMGCreateG 2 1.0 8.3258e-02 1.1 5.06e+04 1.1 6.0e+01 2.8e+03 4.4e+01 0 0 3 1 7 0 0 3 1 7 2 + GAMG Coarsen 2 1.0 3.3963e-02 1.0 1.39e+05 1.0 2.3e+02 7.3e+02 9.6e+01 0 0 10 1 15 0 0 10 1 16 12 + GAMG MIS/Agg 2 1.0 3.2953e-02 1.0 1.39e+05 1.0 2.3e+02 7.3e+02 9.6e+01 0 0 10 1 15 0 0 10 1 16 12 + PCGAMGProl 2 1.0 8.3626e-02 1.0 0.00e+00 0.0 1.9e+02 1.8e+03 1.9e+02 1 0 8 2 30 1 0 8 2 30 0 + GAMG Prol-col 2 1.0 4.1118e-02 1.0 0.00e+00 0.0 1.8e+02 6.8e+02 1.7e+02 0 0 8 1 27 0 0 8 1 28 0 + GAMG Prol-lift 2 1.0 2.1499e-02 1.0 0.00e+00 0.0 1.2e+01 1.9e+04 1.0e+01 0 0 1 1 2 0 0 1 1 2 0 + PCGAMGOptProl 2 1.0 4.1667e-01 1.0 2.12e+07 1.1 1.9e+02 8.1e+03 8.2e+01 3 9 8 10 13 3 9 8 10 13 143 + GAMG smooth 2 1.0 1.4094e-01 1.0 7.19e+06 1.1 4.8e+01 1.9e+04 2.6e+01 1 3 2 6 4 1 3 2 6 4 143 + PCGAMGCreateL 2 1.0 1.0156e+00 1.0 6.29e+07 1.4 1.2e+02 4.8e+04 7.7e+01 6 25 5 36 12 6 25 5 36 12 154 + GAMG PtAP 2 1.0 9.8763e-01 1.0 6.29e+07 1.4 9.6e+01 5.6e+04 2.4e+01 6 25 4 33 4 6 25 4 33 4 159 + GAMG Reduce 1 1.0 2.8030e-02 1.0 0.00e+00 0.0 2.5e+01 1.8e+04 5.3e+01 0 0 1 3 8 0 0 1 3 9 0 +PCGAMG Gal l00 1 1.0 6.4992e-01 1.0 3.78e+07 1.1 4.8e+01 7.1e+04 1.2e+01 4 17 2 22 2 4 17 2 22 2 163 +PCGAMG Opt l00 1 1.0 1.0181e-01 1.0 5.08e+06 1.0 2.4e+01 3.2e+04 1.0e+01 1 2 1 5 2 1 2 1 5 2 148 +PCGAMG Gal l01 1 1.0 3.3783e-01 1.0 2.51e+07 2.2 4.8e+01 4.0e+04 1.2e+01 2 8 2 12 2 2 8 2 12 2 151 +PCGAMG Opt l01 1 1.0 1.4864e-02 1.0 1.56e+06 1.7 2.4e+01 6.8e+03 1.0e+01 0 1 1 1 2 0 1 1 1 2 237 +PCSetUp 2 1.0 1.6600e+00 1.0 8.43e+07 1.2 8.0e+02 1.0e+04 5.0e+02 10 35 33 50 79 10 35 33 50 81 135 +PCSetUpOnBlocks 22 1.0 1.7454e-02 61.7 7.06e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 405 +PCApply 22 1.0 1.4054e+00 1.0 1.23e+08 1.1 1.4e+03 4.0e+03 6.0e+00 8 56 60 36 1 8 56 60 36 1 252 --- Event Stage 1: Unknown @@ -2673,9 +2716,9 @@ --- Event Stage 1: Unknown ======================================================================================================================== -Average time to get PetscTime(): 7.66e-08 -Average time for MPI_Barrier(): 3.158e-06 -Average time for zero size MPI_Send(): 1.54533e-06 +Average time to get PetscTime(): 7.53e-08 +Average time for MPI_Barrier(): 0.00150687 +Average time for zero size MPI_Send(): 1.8429e-05 #PETSc Option Table entries: --ndofs 30000 --problem_type elasticity @@ -2738,67 +2781,67 @@ Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: strong Option left: name:-mg_levels_esteig_ksp_type value: cg -2023-05-10 15:44:08.428 ( 24.839s) [RANK: 0 ] loguru.cpp:526 INFO| atexit +2024-06-13 00:15:39.977 ( 16.873s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson weak scaling (3 processes with ndofs=10000) ==== -2023-05-10 15:44:09.862 ( 0.786s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks -2023-05-10 15:44:09.862 ( 0.786s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph -2023-05-10 15:44:09.862 ( 0.786s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph -2023-05-10 15:44:10.159 ( 1.083s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph -2023-05-10 15:44:10.171 ( 1.095s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:10.194 ( 1.118s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:10.194 ( 1.118s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 -2023-05-10 15:44:10.292 ( 1.216s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 210000, non-local: 1800) -2023-05-10 15:44:10.292 ( 1.216s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH -2023-05-10 15:44:29.120 ( 20.044s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 -2023-05-10 15:44:29.142 ( 20.066s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -2023-05-10 15:44:29.238 ( 20.161s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph -2023-05-10 15:44:29.532 ( 20.455s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(162) 1626-51330 - -2023-05-10 15:44:29.583 ( 20.507s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology -2023-05-10 15:44:29.659 ( 20.582s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 -2023-05-10 15:44:29.686 ( 20.610s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -2023-05-10 15:44:30.038 ( 20.962s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:30.126 ( 21.050s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:30.171 ( 21.094s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:30.198 ( 21.122s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:30.299 ( 21.223s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:30.330 ( 21.254s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:30.442 ( 21.366s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 -2023-05-10 15:44:30.462 ( 21.386s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -2023-05-10 15:44:30.619 ( 21.542s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:30.658 ( 21.582s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:30.775 ( 21.698s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 -2023-05-10 15:44:30.806 ( 21.730s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -2023-05-10 15:44:30.807 ( 21.730s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 -2023-05-10 15:44:30.855 ( 21.779s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:30.886 ( 21.810s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:30.886 ( 21.810s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 -2023-05-10 15:44:31.111 ( 22.035s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 +2024-06-13 00:15:41.246 ( 0.661s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks +2024-06-13 00:15:41.247 ( 0.661s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph +2024-06-13 00:15:41.247 ( 0.661s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph +2024-06-13 00:15:41.454 ( 0.869s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph +2024-06-13 00:15:41.485 ( 0.899s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:15:41.485 ( 0.900s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:15:41.485 ( 0.900s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 +2024-06-13 00:15:41.529 ( 0.944s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 210000, non-local: 1800) +2024-06-13 00:15:41.529 ( 0.944s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH +2024-06-13 00:16:01.921 ( 21.335s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 +2024-06-13 00:16:01.943 ( 21.358s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +2024-06-13 00:16:02.016 ( 21.431s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph +2024-06-13 00:16:02.250 ( 21.664s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(165) 51956-792 + +2024-06-13 00:16:02.286 ( 21.701s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology +2024-06-13 00:16:02.327 ( 21.742s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 +2024-06-13 00:16:02.359 ( 21.774s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +2024-06-13 00:16:02.582 ( 21.997s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:02.595 ( 22.010s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:02.614 ( 22.028s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:02.643 ( 22.058s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:02.662 ( 22.076s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:02.665 ( 22.080s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:02.666 ( 22.080s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 +2024-06-13 00:16:02.666 ( 22.080s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +2024-06-13 00:16:02.666 ( 22.081s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:02.666 ( 22.081s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:02.685 ( 22.100s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 +2024-06-13 00:16:02.685 ( 22.100s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +2024-06-13 00:16:02.685 ( 22.100s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 +2024-06-13 00:16:02.686 ( 22.101s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:02.686 ( 22.101s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:02.686 ( 22.101s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (30x30x30) to be refined 0 times -2023-05-10 15:44:31.255 ( 22.179s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:31.282 ( 22.206s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:32.003 ( 22.926s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:32.035 ( 22.958s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:32.154 ( 23.078s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 -2023-05-10 15:44:32.154 ( 23.078s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. -2023-05-10 15:44:32.158 ( 23.081s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 -2023-05-10 15:44:32.207 ( 23.131s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:32.258 ( 23.182s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:32.387 ( 23.310s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:32.414 ( 23.338s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:32.499 ( 23.422s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 -2023-05-10 15:44:32.518 ( 23.442s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -2023-05-10 15:44:32.799 ( 23.722s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:32.830 ( 23.754s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:33.070 ( 23.994s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 -2023-05-10 15:44:33.072 ( 23.995s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 -2023-05-10 15:44:33.072 ( 23.995s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 -2023-05-10 15:44:33.073 ( 23.996s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 -2023-05-10 15:44:33.667 ( 24.591s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 -2023-05-10 15:44:33.667 ( 24.591s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 2 -2023-05-10 15:44:33.667 ( 24.591s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:33.718 ( 24.642s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:34.172 ( 25.095s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 465 to 1296 +2024-06-13 00:16:02.696 ( 22.111s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 +2024-06-13 00:16:02.748 ( 22.163s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:02.748 ( 22.163s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:02.894 ( 22.309s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:02.894 ( 22.309s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:02.923 ( 22.337s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 +2024-06-13 00:16:02.923 ( 22.338s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. +2024-06-13 00:16:02.932 ( 22.346s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 +2024-06-13 00:16:02.947 ( 22.362s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:02.949 ( 22.363s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:02.949 ( 22.364s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:02.949 ( 22.364s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:02.949 ( 22.364s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 +2024-06-13 00:16:02.949 ( 22.364s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +2024-06-13 00:16:02.950 ( 22.365s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:02.950 ( 22.365s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:02.966 ( 22.380s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 +2024-06-13 00:16:02.970 ( 22.384s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 +2024-06-13 00:16:02.970 ( 22.384s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 +2024-06-13 00:16:02.971 ( 22.385s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 +2024-06-13 00:16:03.046 ( 22.460s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 +2024-06-13 00:16:03.046 ( 22.460s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 2 +2024-06-13 00:16:03.046 ( 22.461s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:03.067 ( 22.482s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:03.132 ( 22.547s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 447 to 1259 ---------------------------------------------------------------- Test problem summary @@ -2813,7 +2856,7 @@ Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- -2023-05-10 15:44:35.479 ( 26.402s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. +2024-06-13 00:16:03.399 ( 22.813s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -2857,44 +2900,44 @@ [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- -Build BoxMesh | 1 21.283498 21.283498 -Build dofmap data | 2 0.605650 1.211300 -Build sparsity | 1 0.120214 0.120214 -Compute connectivity 2-3 | 1 0.011561 0.011561 -Compute dof reordering map | 2 0.000806 0.001613 -Compute entities of dim = 2 | 1 1.059322 1.059322 -Compute graph partition (SCOTCH) | 1 18.791633 18.791633 -Compute local part of mesh dual graph | 2 0.289185 0.578371 -Compute local-to-local map | 1 0.013855 0.013855 -Compute non-local part of mesh dual graph | 1 0.154788 0.154788 -Compute-local-to-global links for global/local adjacency list | 1 0.001526 0.001526 -Distribute AdjacencyList nodes to destination ranks | 1 0.153009 0.153009 -Distribute row-wise data (scalable) | 1 0.276614 0.276614 -Extract partition boundaries from SCOTCH graph | 1 0.002126 0.002126 -GPS: create_level_structure | 2 0.006375 0.038250 -Get SCOTCH graph data | 1 0.000020 0.000020 -Gibbs-Poole-Stockmeyer ordering | 1 0.079163 0.079163 -Init MPI | 1 0.622770 0.622770 -Init PETSc | 1 0.152659 0.152659 -Init dofmap from element dofmap | 2 0.030576 0.061152 -Init logging | 1 0.000064 0.000064 -PETSc Krylov solver | 1 14.419807 14.419807 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.027126 0.027126 -SCOTCH: call SCOTCH_dgraphHalo | 1 0.107892 0.107892 -SCOTCH: call SCOTCH_dgraphPart | 1 18.726697 18.726697 -SparsityPattern::assemble | 1 0.276586 0.276586 -Topology: create | 1 0.705318 0.705318 -Topology: determine shared index ownership | 1 0.187367 0.187367 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.033626 0.033626 -ZZZ Assemble | 1 2.098891 2.098891 -ZZZ Assemble matrix | 1 0.547210 0.547210 -ZZZ Assemble vector | 1 0.087950 0.087950 -ZZZ Create Mesh | 1 21.283662 21.283662 -ZZZ Create RHS function | 1 0.543246 0.543246 -ZZZ Create boundary conditions | 1 0.223021 0.223021 -ZZZ Create facets and facet->cell connectivity | 1 1.071006 1.071006 -ZZZ FunctionSpace | 1 0.766559 0.766559 -ZZZ Solve | 1 14.720252 14.720252 +Build BoxMesh | 1 21.462602 21.462602 +Build dofmap data | 2 0.027391 0.054782 +Build sparsity | 1 0.027782 0.027782 +Compute connectivity 2-3 | 1 0.014235 0.014235 +Compute dof reordering map | 2 0.002957 0.005914 +Compute entities of dim = 2 | 1 0.222682 0.222682 +Compute graph partition (SCOTCH) | 1 20.353801 20.353801 +Compute local part of mesh dual graph | 2 0.211459 0.422918 +Compute local-to-local map | 1 0.005075 0.005075 +Compute non-local part of mesh dual graph | 1 0.150476 0.150476 +Compute-local-to-global links for global/local adjacency list | 1 0.001865 0.001865 +Distribute AdjacencyList nodes to destination ranks | 1 0.139290 0.139290 +Distribute row-wise data (scalable) | 1 0.002777 0.002777 +Extract partition boundaries from SCOTCH graph | 1 0.009212 0.009212 +GPS: create_level_structure | 5 0.003416 0.017080 +Get SCOTCH graph data | 1 0.000022 0.000022 +Gibbs-Poole-Stockmeyer ordering | 1 0.037634 0.037634 +Init MPI | 1 0.720551 0.720551 +Init PETSc | 1 0.005444 0.005444 +Init dofmap from element dofmap | 2 0.008337 0.016673 +Init logging | 1 0.000075 0.000075 +PETSc Krylov solver | 1 1.116563 1.116563 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.031785 0.031785 +SCOTCH: call SCOTCH_dgraphHalo | 1 0.047127 0.047127 +SCOTCH: call SCOTCH_dgraphPart | 1 20.271987 20.271987 +SparsityPattern::assemble | 1 0.076138 0.076138 +Topology: create | 1 0.478309 0.478309 +Topology: determine shared index ownership | 1 0.232726 0.232726 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.026794 0.026794 +ZZZ Assemble | 1 0.433768 0.433768 +ZZZ Assemble matrix | 1 0.177308 0.177308 +ZZZ Assemble vector | 1 0.025934 0.025934 +ZZZ Create Mesh | 1 21.462823 21.462823 +ZZZ Create RHS function | 1 0.086676 0.086676 +ZZZ Create boundary conditions | 1 0.020027 0.020027 +ZZZ Create facets and facet->cell connectivity | 1 0.231763 0.231763 +ZZZ FunctionSpace | 1 0.042189 0.042189 +ZZZ Solve | 1 1.129216 1.129216 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** @@ -2903,16 +2946,16 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos1-amd64 with 3 processors, by pbuilder1 Wed May 10 15:44:49 2023 +/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Thu Jun 13 00:16:04 2024 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total -Time (sec): 4.010e+01 1.000 4.009e+01 +Time (sec): 2.332e+01 1.000 2.332e+01 Objects: 3.200e+01 1.000 3.200e+01 -Flops: 3.500e+06 1.026 3.449e+06 1.035e+07 -Flops/sec: 8.730e+04 1.026 8.602e+04 2.581e+05 +Flops: 3.514e+06 1.029 3.449e+06 1.035e+07 +Flops/sec: 1.507e+05 1.029 1.479e+05 4.437e+05 MPI Msg Count: 2.800e+01 1.000 2.800e+01 8.400e+01 -MPI Msg Len (bytes): 1.919e+05 1.181 6.462e+03 5.428e+05 +MPI Msg Len (bytes): 1.901e+05 1.202 6.352e+03 5.335e+05 MPI Reductions: 6.700e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) @@ -2921,7 +2964,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 4.0092e+01 100.0% 1.0346e+07 100.0% 8.400e+01 100.0% 6.462e+03 100.0% 4.900e+01 73.1% + 0: Main Stage: 2.3322e+01 100.0% 1.0347e+07 100.0% 8.400e+01 100.0% 6.352e+03 100.0% 4.900e+01 73.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -2945,30 +2988,30 @@ --- Event Stage 0: Main Stage -BuildTwoSided 4 1.0 1.1671e-01 1.6 0.00e+00 0.0 1.8e+01 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 8 0 -BuildTwoSidedF 2 1.0 5.7266e-02 1.8 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 -MatMult 7 1.0 1.3213e-01 1.0 1.94e+06 1.0 5.4e+01 4.8e+03 1.0e+00 0 55 64 47 1 0 55 64 47 2 43 -MatConvert 1 1.0 2.8778e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 -MatAssemblyBegin 3 1.0 6.8650e-02 1.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 -MatAssemblyEnd 3 1.0 3.4546e-01 1.1 3.74e+03 1.2 0.0e+00 0.0e+00 6.0e+00 1 0 0 0 9 1 0 0 0 12 0 -MatGetRowIJ 2 1.0 4.4850e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 1 1.0 2.4037e-02 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 -VecTDot 14 1.0 1.1139e-01 1.1 2.82e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 29 7 -VecNorm 8 1.0 1.1346e-01 1.4 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 12 0 5 0 0 16 4 -VecCopy 2 1.0 1.1286e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 9 1.0 1.4276e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 14 1.0 6.4598e-04 1.1 2.82e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1291 -VecAYPX 6 1.0 6.6746e-04 2.2 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 536 -VecScatterBegin 8 1.0 9.2155e-02 1.4 0.00e+00 0.0 7.2e+01 3.8e+03 2.0e+00 0 0 86 51 3 0 0 86 51 4 0 -VecScatterEnd 8 1.0 1.0233e-01 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetGraph 3 1.0 8.4940e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 2 1.0 9.1712e-02 1.4 0.00e+00 0.0 2.4e+01 9.8e+02 2.0e+00 0 0 29 4 3 0 0 29 4 4 0 -SFPack 8 1.0 1.3668e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 8 1.0 3.6591e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSetUp 1 1.0 1.5573e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 6.0039e+00 1.0 2.78e+06 1.0 5.4e+01 4.8e+03 2.3e+01 15 80 64 47 34 15 80 64 47 47 1 -PCSetUp 1 1.0 8.3517e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 21 0 0 0 3 21 0 0 0 4 0 -PCApply 8 1.0 5.6800e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 14 0 0 0 0 14 0 0 0 0 0 +BuildTwoSided 4 1.0 9.0660e-02 8.0 0.00e+00 0.0 1.8e+01 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 8 0 +BuildTwoSidedF 2 1.0 7.4821e-02 36.2 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 +MatMult 7 1.0 1.5549e-02 1.0 1.95e+06 1.0 5.4e+01 4.7e+03 1.0e+00 0 55 64 47 1 0 55 64 47 2 369 +MatConvert 1 1.0 1.8753e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 +MatAssemblyBegin 3 1.0 7.8189e-02 15.3 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 +MatAssemblyEnd 3 1.0 1.8558e-02 1.0 3.69e+03 1.2 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 9 0 0 0 0 12 1 +MatGetRowIJ 2 1.0 2.8760e-06 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 1 1.0 1.0760e-02 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 +VecTDot 14 1.0 5.6474e-04 1.1 2.82e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 29 1477 +VecNorm 8 1.0 1.1628e-02 15.9 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 12 0 5 0 0 16 41 +VecCopy 2 1.0 4.1623e-03 37.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 9 1.0 1.4422e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 14 1.0 6.1569e-04 1.5 2.82e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1355 +VecAYPX 6 1.0 3.2082e-04 1.7 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1114 +VecScatterBegin 8 1.0 3.2483e-02 2.6 0.00e+00 0.0 7.2e+01 3.8e+03 2.0e+00 0 0 86 51 3 0 0 86 51 4 0 +VecScatterEnd 8 1.0 2.2854e-02 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetGraph 3 1.0 6.4665e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 2 1.0 3.2050e-02 2.6 0.00e+00 0.0 2.4e+01 9.6e+02 2.0e+00 0 0 29 4 3 0 0 29 4 4 0 +SFPack 8 1.0 1.1338e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 8 1.0 3.4603e-05 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSetUp 1 1.0 5.7031e-04 3.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 5.0960e-01 1.0 2.79e+06 1.0 5.4e+01 4.7e+03 2.3e+01 2 80 64 47 34 2 80 64 47 47 16 +PCSetUp 1 1.0 5.6003e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 2 0 0 0 3 2 0 0 0 4 0 +PCApply 8 1.0 4.9086e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 --- Event Stage 1: Unknown @@ -2990,9 +3033,9 @@ --- Event Stage 1: Unknown ======================================================================================================================== -Average time to get PetscTime(): 7.44e-08 -Average time for MPI_Barrier(): 3.2548e-06 -Average time for zero size MPI_Send(): 6.37233e-06 +Average time to get PetscTime(): 7.58e-08 +Average time for MPI_Barrier(): 3.669e-06 +Average time for zero size MPI_Send(): 1.0145e-05 #PETSc Option Table entries: --ndofs 10000 --problem_type poisson @@ -3048,67 +3091,67 @@ Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: weak -2023-05-10 15:44:50.513 ( 41.437s) [RANK: 0 ] loguru.cpp:526 INFO| atexit +2024-06-13 00:16:04.725 ( 24.140s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson strong scaling (3 processes with ndofs=30000) ==== -2023-05-10 15:44:52.082 ( 0.876s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks -2023-05-10 15:44:52.082 ( 0.876s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph -2023-05-10 15:44:52.082 ( 0.876s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph -2023-05-10 15:44:52.480 ( 1.273s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph -2023-05-10 15:44:52.495 ( 1.289s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:44:52.526 ( 1.320s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:44:52.526 ( 1.320s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 -2023-05-10 15:44:52.640 ( 1.434s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 210000, non-local: 1800) -2023-05-10 15:44:52.640 ( 1.434s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH -2023-05-10 15:45:12.317 ( 21.110s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 -2023-05-10 15:45:12.338 ( 21.132s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -2023-05-10 15:45:12.398 ( 21.192s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph -2023-05-10 15:45:12.619 ( 21.413s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(169) 50547-237 - -2023-05-10 15:45:12.653 ( 21.447s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology -2023-05-10 15:45:12.668 ( 21.462s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 -2023-05-10 15:45:12.694 ( 21.488s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -2023-05-10 15:45:12.930 ( 21.724s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:45:12.942 ( 21.736s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:45:12.966 ( 21.760s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:45:12.982 ( 21.776s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:45:13.025 ( 21.819s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:45:13.038 ( 21.832s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:45:13.078 ( 21.872s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 -2023-05-10 15:45:13.090 ( 21.884s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -2023-05-10 15:45:13.151 ( 21.945s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:45:13.166 ( 21.960s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:45:13.231 ( 22.024s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 -2023-05-10 15:45:13.242 ( 22.036s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -2023-05-10 15:45:13.242 ( 22.036s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 -2023-05-10 15:45:13.275 ( 22.069s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:45:13.290 ( 22.084s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:45:13.290 ( 22.084s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 -2023-05-10 15:45:13.383 ( 22.176s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 +2024-06-13 00:16:06.170 ( 0.801s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks +2024-06-13 00:16:06.170 ( 0.801s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph +2024-06-13 00:16:06.170 ( 0.801s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph +2024-06-13 00:16:06.369 ( 1.001s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph +2024-06-13 00:16:06.383 ( 1.015s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:06.399 ( 1.030s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:06.399 ( 1.030s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 +2024-06-13 00:16:06.457 ( 1.088s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 210000, non-local: 1800) +2024-06-13 00:16:06.457 ( 1.088s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH +2024-06-13 00:16:24.681 ( 19.312s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 +2024-06-13 00:16:24.703 ( 19.334s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +2024-06-13 00:16:24.766 ( 19.397s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph +2024-06-13 00:16:25.030 ( 19.661s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(162) 1473-51245 + +2024-06-13 00:16:25.076 ( 19.707s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology +2024-06-13 00:16:25.147 ( 19.778s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 +2024-06-13 00:16:25.171 ( 19.802s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +2024-06-13 00:16:25.495 ( 20.126s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:25.519 ( 20.150s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:25.559 ( 20.190s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:25.575 ( 20.206s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:25.625 ( 20.256s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:25.639 ( 20.270s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:25.703 ( 20.334s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 +2024-06-13 00:16:25.715 ( 20.346s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +2024-06-13 00:16:25.811 ( 20.442s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:25.835 ( 20.466s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:25.911 ( 20.542s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 +2024-06-13 00:16:25.927 ( 20.558s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +2024-06-13 00:16:25.927 ( 20.558s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 +2024-06-13 00:16:25.960 ( 20.591s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:25.983 ( 20.614s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:25.983 ( 20.614s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (30x30x30) to be refined 0 times -2023-05-10 15:45:13.462 ( 22.256s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:45:13.463 ( 22.257s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:45:13.855 ( 22.649s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:45:13.890 ( 22.684s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:45:13.946 ( 22.740s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 -2023-05-10 15:45:13.954 ( 22.748s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. -2023-05-10 15:45:13.958 ( 22.752s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 -2023-05-10 15:45:13.973 ( 22.767s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:45:13.998 ( 22.792s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:45:14.043 ( 22.836s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:45:14.062 ( 22.856s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:45:14.122 ( 22.916s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 -2023-05-10 15:45:14.138 ( 22.932s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -2023-05-10 15:45:14.250 ( 23.044s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:45:14.266 ( 23.060s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:45:14.390 ( 23.184s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 -2023-05-10 15:45:14.392 ( 23.186s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 -2023-05-10 15:45:14.392 ( 23.186s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 -2023-05-10 15:45:14.393 ( 23.187s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 -2023-05-10 15:45:14.867 ( 23.660s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 -2023-05-10 15:45:14.867 ( 23.660s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 2 -2023-05-10 15:45:14.867 ( 23.661s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 -2023-05-10 15:45:14.886 ( 23.680s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -2023-05-10 15:45:15.186 ( 23.980s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 451 to 1248 +2024-06-13 00:16:26.187 ( 20.819s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 +2024-06-13 00:16:26.274 ( 20.905s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:26.303 ( 20.934s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:26.671 ( 21.302s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:26.695 ( 21.326s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:26.762 ( 21.393s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 +2024-06-13 00:16:26.762 ( 21.393s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. +2024-06-13 00:16:26.774 ( 21.405s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 +2024-06-13 00:16:26.796 ( 21.428s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:26.819 ( 21.450s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:26.891 ( 21.522s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:26.899 ( 21.530s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:26.939 ( 21.570s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 +2024-06-13 00:16:26.947 ( 21.578s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +2024-06-13 00:16:27.107 ( 21.738s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:27.135 ( 21.766s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:27.291 ( 21.922s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 +2024-06-13 00:16:27.292 ( 21.923s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 +2024-06-13 00:16:27.292 ( 21.923s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 +2024-06-13 00:16:27.293 ( 21.924s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 +2024-06-13 00:16:27.703 ( 22.334s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 +2024-06-13 00:16:27.703 ( 22.334s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 2 +2024-06-13 00:16:27.703 ( 22.334s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 +2024-06-13 00:16:27.735 ( 22.366s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +2024-06-13 00:16:28.000 ( 22.631s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 454 to 1246 ---------------------------------------------------------------- Test problem summary @@ -3123,7 +3166,7 @@ Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- -2023-05-10 15:45:16.203 ( 24.996s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. +2024-06-13 00:16:28.291 ( 22.922s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -3167,44 +3210,44 @@ [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- -Build BoxMesh | 1 21.331487 21.331487 -Build dofmap data | 2 0.270792 0.541584 -Build sparsity | 1 0.084778 0.084778 -Compute connectivity 2-3 | 1 0.011478 0.011478 -Compute dof reordering map | 2 0.000756 0.001511 -Compute entities of dim = 2 | 1 0.575563 0.575563 -Compute graph partition (SCOTCH) | 1 19.638600 19.638600 -Compute local part of mesh dual graph | 2 0.295074 0.590147 -Compute local-to-local map | 1 0.001817 0.001817 -Compute non-local part of mesh dual graph | 1 0.202193 0.202193 -Compute-local-to-global links for global/local adjacency list | 1 0.001555 0.001555 -Distribute AdjacencyList nodes to destination ranks | 1 0.117276 0.117276 -Distribute row-wise data (scalable) | 1 0.124418 0.124418 -Extract partition boundaries from SCOTCH graph | 1 0.002302 0.002302 -GPS: create_level_structure | 6 0.006414 0.019687 -Get SCOTCH graph data | 1 0.000015 0.000015 -Gibbs-Poole-Stockmeyer ordering | 1 0.039052 0.039052 -Init MPI | 1 0.723874 0.723874 -Init PETSc | 1 0.128901 0.128901 -Init dofmap from element dofmap | 2 0.017693 0.035387 -Init logging | 1 0.000062 0.000062 -PETSc Krylov solver | 1 4.156851 4.156851 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.019118 0.019118 -SCOTCH: call SCOTCH_dgraphHalo | 1 0.035939 0.035939 -SCOTCH: call SCOTCH_dgraphPart | 1 19.580934 19.580934 -SparsityPattern::assemble | 1 0.165577 0.165577 -Topology: create | 1 0.399227 0.399227 -Topology: determine shared index ownership | 1 0.142292 0.142292 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.016142 0.016142 -ZZZ Assemble | 1 1.586902 1.586902 -ZZZ Assemble matrix | 1 0.404177 0.404177 -ZZZ Assemble vector | 1 0.055991 0.055991 -ZZZ Create Mesh | 1 21.331621 21.331621 -ZZZ Create RHS function | 1 0.419625 0.419625 -ZZZ Create boundary conditions | 1 0.155003 0.155003 -ZZZ Create facets and facet->cell connectivity | 1 0.578638 0.578638 -ZZZ FunctionSpace | 1 0.346261 0.346261 -ZZZ Solve | 1 4.373046 4.373046 +Build BoxMesh | 1 20.046547 20.046547 +Build dofmap data | 2 0.343146 0.686291 +Build sparsity | 1 0.065763 0.065763 +Compute connectivity 2-3 | 1 0.011446 0.011446 +Compute dof reordering map | 2 0.000682 0.001363 +Compute entities of dim = 2 | 1 0.585484 0.585484 +Compute graph partition (SCOTCH) | 1 18.190277 18.190277 +Compute local part of mesh dual graph | 2 0.241615 0.483230 +Compute local-to-local map | 1 0.001619 0.001619 +Compute non-local part of mesh dual graph | 1 0.087303 0.087303 +Compute-local-to-global links for global/local adjacency list | 1 0.001467 0.001467 +Distribute AdjacencyList nodes to destination ranks | 1 0.130459 0.130459 +Distribute row-wise data (scalable) | 1 0.204592 0.204592 +Extract partition boundaries from SCOTCH graph | 1 0.002115 0.002115 +GPS: create_level_structure | 2 0.007783 0.023348 +Get SCOTCH graph data | 1 0.000014 0.000014 +Gibbs-Poole-Stockmeyer ordering | 1 0.057372 0.057372 +Init MPI | 1 0.701279 0.701279 +Init PETSc | 1 0.077617 0.077617 +Init dofmap from element dofmap | 2 0.015978 0.031957 +Init logging | 1 0.000084 0.000084 +PETSc Krylov solver | 1 0.434506 0.434506 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.012699 0.012699 +SCOTCH: call SCOTCH_dgraphHalo | 1 0.035824 0.035824 +SCOTCH: call SCOTCH_dgraphPart | 1 18.138059 18.138059 +SparsityPattern::assemble | 1 0.159669 0.159669 +Topology: create | 1 0.539118 0.539118 +Topology: determine shared index ownership | 1 0.188563 0.188563 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.023470 0.023470 +ZZZ Assemble | 1 1.099110 1.099110 +ZZZ Assemble matrix | 1 0.198252 0.198252 +ZZZ Assemble vector | 1 0.032628 0.032628 +ZZZ Create Mesh | 1 20.046698 20.046698 +ZZZ Create RHS function | 1 0.355811 0.355811 +ZZZ Create boundary conditions | 1 0.159153 0.159153 +ZZZ Create facets and facet->cell connectivity | 1 0.596693 0.596693 +ZZZ FunctionSpace | 1 0.414411 0.414411 +ZZZ Solve | 1 0.437865 0.437865 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** @@ -3213,16 +3256,16 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos1-amd64 with 3 processors, by pbuilder1 Wed May 10 15:45:20 2023 +/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Thu Jun 13 00:16:28 2024 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total -Time (sec): 2.830e+01 1.000 2.830e+01 +Time (sec): 2.258e+01 1.000 2.258e+01 Objects: 3.200e+01 1.000 3.200e+01 -Flops: 3.518e+06 1.032 3.449e+06 1.035e+07 -Flops/sec: 1.243e+05 1.032 1.219e+05 3.656e+05 +Flops: 3.510e+06 1.029 3.449e+06 1.035e+07 +Flops/sec: 1.554e+05 1.029 1.527e+05 4.582e+05 MPI Msg Count: 2.800e+01 1.000 2.800e+01 8.400e+01 -MPI Msg Len (bytes): 1.888e+05 1.198 6.312e+03 5.302e+05 +MPI Msg Len (bytes): 1.990e+05 1.261 6.459e+03 5.426e+05 MPI Reductions: 6.700e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) @@ -3231,7 +3274,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 2.8301e+01 100.0% 1.0348e+07 100.0% 8.400e+01 100.0% 6.312e+03 100.0% 4.900e+01 73.1% + 0: Main Stage: 2.2582e+01 100.0% 1.0347e+07 100.0% 8.400e+01 100.0% 6.459e+03 100.0% 4.900e+01 73.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -3255,30 +3298,30 @@ --- Event Stage 0: Main Stage -BuildTwoSided 4 1.0 5.2845e-02 1.5 0.00e+00 0.0 1.8e+01 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 8 0 -BuildTwoSidedF 2 1.0 5.2838e-02 1.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 -MatMult 7 1.0 3.0357e-02 1.2 1.95e+06 1.0 5.4e+01 4.6e+03 1.0e+00 0 55 64 47 1 0 55 64 47 2 189 -MatConvert 1 1.0 2.2770e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 -MatAssemblyBegin 3 1.0 6.7517e-02 1.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 -MatAssemblyEnd 3 1.0 2.4095e-01 1.1 3.74e+03 1.2 0.0e+00 0.0e+00 6.0e+00 1 0 0 0 9 1 0 0 0 12 0 -MatGetRowIJ 2 1.0 4.4740e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 1 1.0 3.8885e-03 20.1 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 -VecTDot 14 1.0 2.0254e-02 2.4 2.83e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 29 41 -VecNorm 8 1.0 2.4555e-02 44.5 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 12 0 5 0 0 16 19 -VecCopy 2 1.0 8.1436e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 9 1.0 1.2033e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 14 1.0 5.1039e-04 1.2 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1634 -VecAYPX 6 1.0 1.7967e-04 1.2 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1990 -VecScatterBegin 8 1.0 5.9977e-04 1.2 0.00e+00 0.0 7.2e+01 3.7e+03 2.0e+00 0 0 86 51 3 0 0 86 51 4 0 -VecScatterEnd 8 1.0 1.9857e-02 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetGraph 3 1.0 7.7722e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 2 1.0 3.3242e-04 1.4 0.00e+00 0.0 2.4e+01 9.6e+02 2.0e+00 0 0 29 4 3 0 0 29 4 4 0 -SFPack 8 1.0 9.4712e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 8 1.0 1.5931e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSetUp 1 1.0 1.7039e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 8.1221e-01 1.0 2.80e+06 1.0 5.4e+01 4.6e+03 2.3e+01 3 80 64 47 34 3 80 64 47 47 10 -PCSetUp 1 1.0 3.3434e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 12 0 0 0 3 12 0 0 0 4 0 -PCApply 8 1.0 7.6107e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0 +BuildTwoSided 4 1.0 8.4618e-02 618.3 0.00e+00 0.0 1.8e+01 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 8 0 +BuildTwoSidedF 2 1.0 8.4590e-02 621.1 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 +MatMult 7 1.0 5.4844e-03 1.0 1.94e+06 1.0 5.4e+01 4.8e+03 1.0e+00 0 55 64 48 1 0 55 64 48 2 1045 +MatConvert 1 1.0 1.3072e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 +MatAssemblyBegin 3 1.0 8.7604e-02 34.3 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 +MatAssemblyEnd 3 1.0 1.7878e-02 1.4 3.91e+03 1.3 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 9 0 0 0 0 12 1 +MatGetRowIJ 2 1.0 1.7010e-06 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 1 1.0 4.2284e-04 4.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 +VecTDot 14 1.0 4.2692e-04 1.2 2.82e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 29 1954 +VecNorm 8 1.0 7.8851e-04 3.0 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 12 0 5 0 0 16 605 +VecCopy 2 1.0 1.0328e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 9 1.0 1.2596e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 14 1.0 5.0295e-04 1.2 2.82e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1659 +VecAYPX 6 1.0 2.4484e-04 1.8 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1460 +VecScatterBegin 8 1.0 4.2506e-04 1.1 0.00e+00 0.0 7.2e+01 3.8e+03 2.0e+00 0 0 86 51 3 0 0 86 51 4 0 +VecScatterEnd 8 1.0 1.9878e-03 7.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetGraph 3 1.0 7.0369e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 2 1.0 2.0562e-04 1.2 0.00e+00 0.0 2.4e+01 9.8e+02 2.0e+00 0 0 29 4 3 0 0 29 4 4 0 +SFPack 8 1.0 8.9606e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 8 1.0 9.8660e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSetUp 1 1.0 3.2280e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 1.7056e-01 1.0 2.79e+06 1.0 5.4e+01 4.8e+03 2.3e+01 1 80 64 48 34 1 80 64 48 47 48 +PCSetUp 1 1.0 2.6310e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 +PCApply 8 1.0 1.6346e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 --- Event Stage 1: Unknown @@ -3300,9 +3343,9 @@ --- Event Stage 1: Unknown ======================================================================================================================== -Average time to get PetscTime(): 8.59e-08 -Average time for MPI_Barrier(): 3.8128e-06 -Average time for zero size MPI_Send(): 6.505e-06 +Average time to get PetscTime(): 6.55e-08 +Average time for MPI_Barrier(): 2.839e-06 +Average time for zero size MPI_Send(): 3.90233e-06 #PETSc Option Table entries: --ndofs 30000 --problem_type poisson @@ -3358,13 +3401,13 @@ Option left: name:--ndofs value: 30000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: strong -2023-05-10 15:45:20.520 ( 29.314s) [RANK: 0 ] loguru.cpp:526 INFO| atexit +2024-06-13 00:16:28.820 ( 23.452s) [RANK: 0 ] loguru.cpp:526 INFO| atexit make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src - cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/fenicsx-performance-tests-0.5.0\~git20220731.821823b/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/fenicsx-performance-tests-0.5.0\~git20220731.821823b/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -B"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -3395,9 +3438,9 @@ dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src -dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.5.0~git20220731.821823b-1_all.deb'. -dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.5.0~git20220731.821823b-1_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.deb'. +dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.5.0~git20220731.821823b-1_amd64.deb'. +dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.5.0~git20220731.821823b-1_all.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3405,12 +3448,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1990128 and its subdirectories -I: Current time: Wed May 10 15:45:58 -12 2023 -I: pbuilder-time-stamp: 1683776758 +I: removing directory /srv/workspace/pbuilder/4142753 and its subdirectories +I: Current time: Thu Jun 13 00:17:12 +14 2024 +I: pbuilder-time-stamp: 1718187432