Diff of the two buildlogs: -- --- b1/build.log 2023-06-01 18:16:58.578452105 +0000 +++ b2/build.log 2023-06-01 19:17:58.846121371 +0000 @@ -1,8 +1,49 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jun 1 05:39:48 -12 2023 -I: pbuilder-time-stamp: 1685641188 +I: Current time: Thu Jul 4 14:40:04 +14 2024 +I: pbuilder-time-stamp: 1720053604 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] +tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel: time stamp 2025-08-05 10:27:04 is 34285614.773181639 s in the future +tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel.other: time stamp 2025-08-05 10:27:04 is 34285614.772959278 s in the future +tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples: time stamp 2025-08-05 10:27:04 is 34285614.772917008 s in the future +tar: ./usr/share/doc/adduser/examples: time stamp 2025-08-05 10:27:04 is 34285614.772873124 s in the future +tar: ./usr/share/doc/adduser: time stamp 2025-08-05 10:27:04 is 34285614.772834857 s in the future +tar: ./usr/share/locale/ca/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.615289922 s in the future +tar: ./usr/share/locale/cs/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.599623642 s in the future +tar: ./usr/share/locale/da/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.583438473 s in the future +tar: ./usr/share/locale/de/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.565630528 s in the future +tar: ./usr/share/locale/es/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.539805734 s in the future +tar: ./usr/share/locale/eu/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.53560872 s in the future +tar: ./usr/share/locale/fr/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.500117466 s in the future +tar: ./usr/share/locale/gl/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.493775488 s in the future +tar: ./usr/share/locale/hu/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.482932596 s in the future +tar: ./usr/share/locale/it/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.466231919 s in the future +tar: ./usr/share/locale/ja/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.448522464 s in the future +tar: ./usr/share/locale/ko/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.437419338 s in the future +tar: ./usr/share/locale/nb/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.426204427 s in the future +tar: ./usr/share/locale/nl/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.409581811 s in the future +tar: ./usr/share/locale/pl/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.394404733 s in the future +tar: ./usr/share/locale/pt/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.35795251 s in the future +tar: ./usr/share/locale/pt_BR/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.343217028 s in the future +tar: ./usr/share/locale/ru/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.311037746 s in the future +tar: ./usr/share/locale/sk/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.302163808 s in the future +tar: ./usr/share/locale/sv/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.269666845 s in the future +tar: ./usr/share/locale/uk/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.235252529 s in the future +tar: ./usr/share/locale/vi/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.216347566 s in the future +tar: ./usr/share/locale/zh_CN/LC_MESSAGES: time stamp 2025-08-05 10:27:04 is 34285614.198951756 s in the future +tar: ./usr/share/man/de/man5: time stamp 2025-08-05 10:27:04 is 34285613.991098899 s in the future +tar: ./usr/share/man/fr/man5: time stamp 2025-08-05 10:27:04 is 34285613.985069231 s in the future +tar: ./usr/share/man/man5: time stamp 2025-08-05 10:27:04 is 34285613.977563031 s in the future +tar: ./usr/share/man/nl/man5: time stamp 2025-08-05 10:27:04 is 34285613.970642161 s in the future +tar: ./usr/share/man/nl/man8: time stamp 2025-08-05 10:27:04 is 34285613.969694728 s in the future +tar: ./usr/share/man/pt/man5: time stamp 2025-08-05 10:27:04 is 34285613.965789242 s in the future +tar: ./usr/share/man/pt/man8: time stamp 2025-08-05 10:27:04 is 34285613.964941294 s in the future +tar: ./usr/share/perl5/Debian: time stamp 2025-08-05 10:27:04 is 34285613.924987238 s in the future +tar: ./var/lib/dpkg/info/adduser.list: time stamp 2025-08-05 10:27:04 is 34285611.859434746 s in the future +tar: ./usr/sbin: time stamp 2025-08-05 10:27:04 is 34285611.617736766 s in the future +tar: ./usr/share/man/man8: time stamp 2025-08-05 10:27:04 is 34285611.616283726 s in the future +tar: ./usr/share/man/fr/man8: time stamp 2025-08-05 10:27:04 is 34285611.616188904 s in the future +tar: ./usr/share/man/de/man8: time stamp 2025-08-05 10:27:04 is 34285611.616096649 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -16,7 +57,7 @@ I: copying [./apbs_3.4.1.orig.tar.gz] I: copying [./apbs_3.4.1-5.debian.tar.xz] I: Extracting source -gpgv: Signature made Tue Jan 10 08:57:55 2023 -12 +gpgv: Signature made Wed Jan 11 10:57:55 2023 +14 gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./apbs_3.4.1-5.dsc: no acceptable signature found @@ -34,135 +75,167 @@ dpkg-source: info: applying open-U-obsolete.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1931908/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3462987/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 4 14:40 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3462987/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3462987/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4d432691dfe04c5c9a6dd061684d7886' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1931908' - PS1='# ' - PS2='> ' + INVOCATION_ID=61a0324bba484157923de3408761da28 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3462987 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fY3tsCF3/pbuilderrc_l7mC --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fY3tsCF3/b1 --logfile b1/build.log apbs_3.4.1-5.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fY3tsCF3/pbuilderrc_jIsa --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fY3tsCF3/b2 --logfile b2/build.log --extrapackages usrmerge apbs_3.4.1-5.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-0.deb11.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.20-2~bpo11+1 (2023-04-23) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more - -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount - -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1931908/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 2023 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 2023 more + -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount + -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Jul 4 14:40 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 2023 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/3462987/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -441,7 +514,7 @@ Get: 202 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get: 203 http://deb.debian.org/debian bookworm/main amd64 swig4.0 amd64 4.1.0-0.2 [1388 kB] Get: 204 http://deb.debian.org/debian bookworm/main amd64 swig all 4.1.0-0.2 [321 kB] -Fetched 109 MB in 3s (35.5 MB/s) +Fetched 109 MB in 4s (30.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19591 files and directories currently installed.) @@ -1294,10 +1367,17 @@ Reading package lists... Building dependency tree... Reading state information... +usrmerge is already the newest version (35). fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/apbs-3.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../apbs_3.4.1-5_source.changes +I: user script /srv/workspace/pbuilder/3462987/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/3462987/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/apbs-3.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../apbs_3.4.1-5_source.changes dpkg-buildpackage: info: source package apbs dpkg-buildpackage: info: source version 3.4.1-5 dpkg-buildpackage: info: source distribution unstable @@ -1558,7 +1638,7 @@ -- ** PROJECT DESC: Adaptive Poisson-Boltzmann Solver -- ** PROJECT URL: http://www.poissonboltzmann.org/ -- ** VERSION_DATA: 3.4.1 --- ** CURRENT_TIME: 2023-01-10T08:56:38 +-- ** CURRENT_TIME: 2023-01-11T10:56:38 -- ** CURRENT_YEAR: 2023 -- Setting project paths -- Setting lookup paths for headers and libraries @@ -1743,7 +1823,7 @@ -- Build files have been written to: /build/apbs-3.4.1/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/apbs-3.4.1' dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/apbs-3.4.1 -B/build/apbs-3.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/apbs-3.4.1/obj-x86_64-linux-gnu/CMakeFiles /build/apbs-3.4.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -1751,127 +1831,198 @@ make[2]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make -f _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/build.make _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/depend make -f _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/build.make _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/depend -make -f _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/build.make _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/depend -make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/python /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake --color= +make -f _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/build.make _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/depend make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/DependInfo.cmake --color= +make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/python /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake --color= Dependee "/build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". Dependee "/build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". +Scanning dependencies of target apbslib_swig_compilation +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/build +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make -f _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/build.make _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/build make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make -f _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/build.make _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/build make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[ 0%] Swig compile apbslib.i for python make -f _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/build.make _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/build -Scanning dependencies of target apbslib_swig_compilation +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python && /usr/bin/cmake -E make_directory /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/build make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 0%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scrind.c.o +[ 1%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scg.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scg.c.o -MF CMakeFiles/cgcode.dir/scg.c.o.d -o CMakeFiles/cgcode.dir/scg.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/scg.c +[ 1%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgdrv.c.o [ 2%] Building C object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/base/gamer_base.c.o -[ 2%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/CorrectNormals.C.o -[ 3%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcg.c.o -[ 3%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/tetgen/predicates.cpp.o +[ 3%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i77vers.c.o +[ 3%] Building C object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/triangle/triangle.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgdrv.c.o -MF CMakeFiles/cgcode.dir/scgdrv.c.o.d -o CMakeFiles/cgcode.dir/scgdrv.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/scgdrv.c [ 3%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scr.c.o -[ 4%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scg.c.o -[ 4%] Building C object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/triangle/triangle.c.o -[ 4%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/tetgen/tetgen.cpp.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i77vers.c.o -MF CMakeFiles/vf2c.dir/i77vers.c.o.d -o CMakeFiles/vf2c.dir/i77vers.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/i77vers.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python && /usr/bin/cmake -E touch /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON.stamp +[ 3%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/f77vers.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/cc -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/base/gamer_base.c.o -MF CMakeFiles/gamer.dir/base/gamer_base.c.o.d -o CMakeFiles/gamer.dir/base/gamer_base.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base/gamer_base.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scrind.c.o -MF CMakeFiles/cgcode.dir/scrind.c.o.d -o CMakeFiles/cgcode.dir/scrind.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/scrind.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/cc -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/triangle/triangle.c.o -MF CMakeFiles/gamer.dir/triangle/triangle.c.o.d -o CMakeFiles/gamer.dir/triangle/triangle.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle/triangle.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scg.c.o -MF CMakeFiles/cgcode.dir/scg.c.o.d -o CMakeFiles/cgcode.dir/scg.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/scg.c +[ 3%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/tetgen/predicates.cpp.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/f77vers.c.o -MF CMakeFiles/vf2c.dir/f77vers.c.o.d -o CMakeFiles/vf2c.dir/f77vers.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/f77vers.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scr.c.o -MF CMakeFiles/cgcode.dir/scr.c.o.d -o CMakeFiles/cgcode.dir/scr.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/scr.c +[ 3%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scrind.c.o +[ 3%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/abort_.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/cc -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/triangle/triangle.c.o -MF CMakeFiles/gamer.dir/triangle/triangle.c.o.d -o CMakeFiles/gamer.dir/triangle/triangle.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle/triangle.c +[ 3%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/tetgen/tetgen.cpp.o +[ 3%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_rnge.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_rnge.c.o -MF CMakeFiles/vf2c.dir/s_rnge.c.o.d -o CMakeFiles/vf2c.dir/s_rnge.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/s_rnge.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scrind.c.o -MF CMakeFiles/cgcode.dir/scrind.c.o.d -o CMakeFiles/cgcode.dir/scrind.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/scrind.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/tetgen/predicates.cpp.o -MF CMakeFiles/gamer.dir/tetgen/predicates.cpp.o.d -o CMakeFiles/gamer.dir/tetgen/predicates.cpp.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen/predicates.cpp -[ 4%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgdrv.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/CorrectNormals.C.o -MF CMakeFiles/gamer.dir/biom/CorrectNormals.C.o.d -o CMakeFiles/gamer.dir/biom/CorrectNormals.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/CorrectNormals.C -[ 4%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgnr.c.o -[ 4%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgdrv.c.o -MF CMakeFiles/cgcode.dir/scgdrv.c.o.d -o CMakeFiles/cgcode.dir/scgdrv.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/scgdrv.c +[ 4%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/CorrectNormals.C.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/abort_.c.o -MF CMakeFiles/vf2c.dir/abort_.c.o.d -o CMakeFiles/vf2c.dir/abort_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/abort_.c +[ 4%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/exit_.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/tetgen/tetgen.cpp.o -MF CMakeFiles/gamer.dir/tetgen/tetgen.cpp.o.d -o CMakeFiles/gamer.dir/tetgen/tetgen.cpp.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o -MF CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o.d -o CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/GenerateSphereMesh.C -[ 4%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/f77vers.c.o -[ 4%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgne.c.o -[ 4%] Swig compile apbslib.i for python -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python && /usr/bin/cmake -E make_directory /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/exit_.c.o -MF CMakeFiles/vf2c.dir/exit_.c.o.d -o CMakeFiles/vf2c.dir/exit_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/exit_.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/CorrectNormals.C.o -MF CMakeFiles/gamer.dir/biom/CorrectNormals.C.o.d -o CMakeFiles/gamer.dir/biom/CorrectNormals.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/CorrectNormals.C +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig4.0 /usr/bin/swig4.0 -python -outdir /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python -interface _apbslib -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/python3.11 -I/build/apbs-3.4.1/tools/python -o /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /build/apbs-3.4.1/tools/python/apbslib.i +[ 5%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcg.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcg.c.o -MF CMakeFiles/cgcode.dir/spcg.c.o.d -o CMakeFiles/cgcode.dir/spcg.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/spcg.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/f77vers.c.o -MF CMakeFiles/vf2c.dir/f77vers.c.o.d -o CMakeFiles/vf2c.dir/f77vers.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/f77vers.c +[ 5%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/iargc_.c.o +[ 6%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/getarg_.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/getarg_.c.o -MF CMakeFiles/vf2c.dir/getarg_.c.o.d -o CMakeFiles/vf2c.dir/getarg_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/getarg_.c +[ 6%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/iargc_.c.o -MF CMakeFiles/vf2c.dir/iargc_.c.o.d -o CMakeFiles/vf2c.dir/iargc_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/iargc_.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o -MF CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o.d -o CMakeFiles/gamer.dir/biom/GenerateSphereMesh.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/GenerateSphereMesh.C +[ 6%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgnr.c.o +[ 6%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/getenv_.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgnr.c.o -MF CMakeFiles/cgcode.dir/scgnr.c.o.d -o CMakeFiles/cgcode.dir/scgnr.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/scgnr.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python && /usr/bin/cmake -E touch /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON.stamp +[ 6%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgne.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/getenv_.c.o -MF CMakeFiles/vf2c.dir/getenv_.c.o.d -o CMakeFiles/vf2c.dir/getenv_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/getenv_.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scgne.c.o -MF CMakeFiles/cgcode.dir/scgne.c.o.d -o CMakeFiles/cgcode.dir/scgne.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/scgne.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig4.0 /usr/bin/swig4.0 -python -outdir /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python -interface _apbslib -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/python3.11 -I/build/apbs-3.4.1/tools/python -o /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /build/apbs-3.4.1/tools/python/apbslib.i -[ 4%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/MarchingCube.C.o -cd 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-I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/signal_.c.o -MF CMakeFiles/vf2c.dir/signal_.c.o.d -o CMakeFiles/vf2c.dir/signal_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/signal_.c +[ 7%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_stop.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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CMakeFiles/vf2c.dir/s_paus.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/s_paus.c +[ 7%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/system_.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/system_.c.o -MF CMakeFiles/vf2c.dir/system_.c.o.d -o CMakeFiles/vf2c.dir/system_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/system_.c +[ 7%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcgnr.c.o cd 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/usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/cabs.c.o -MF CMakeFiles/vf2c.dir/cabs.c.o.d -o CMakeFiles/vf2c.dir/cabs.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/cabs.c +[ 8%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/derf_.c.o +[ 9%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcgne.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/derf_.c.o -MF CMakeFiles/vf2c.dir/derf_.c.o.d -o CMakeFiles/vf2c.dir/derf_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/derf_.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcgne.c.o -MF CMakeFiles/cgcode.dir/spcgne.c.o.d -o CMakeFiles/cgcode.dir/spcgne.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/spcgne.c -[ 6%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sppcg.c.o +[ 9%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/derfc_.c.o +[ 9%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sppcg.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/derfc_.c.o -MF CMakeFiles/vf2c.dir/derfc_.c.o.d -o CMakeFiles/vf2c.dir/derfc_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/derfc_.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sppcg.c.o -MF CMakeFiles/cgcode.dir/sppcg.c.o.d -o CMakeFiles/cgcode.dir/sppcg.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/sppcg.c -[ 6%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_rnge.c.o -[ 6%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcgca.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_rnge.c.o -MF CMakeFiles/vf2c.dir/s_rnge.c.o.d -o CMakeFiles/vf2c.dir/s_rnge.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/s_rnge.c +[ 9%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcgca.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/spcgca.c.o -MF CMakeFiles/cgcode.dir/spcgca.c.o.d -o CMakeFiles/cgcode.dir/spcgca.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/spcgca.c -[ 7%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o -MF CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o.d -o CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/PDB2Mesh.C -[ 8%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sdpchb.c.o +[ 10%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/erf_.c.o +[ 11%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sdpchb.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/erf_.c.o -MF CMakeFiles/vf2c.dir/erf_.c.o.d -o CMakeFiles/vf2c.dir/erf_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/erf_.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sdpchb.c.o -MF CMakeFiles/cgcode.dir/sdpchb.c.o.d -o CMakeFiles/cgcode.dir/sdpchb.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/sdpchb.c -[ 8%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scbfix.c.o +[ 11%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/erfc_.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/erfc_.c.o -MF CMakeFiles/vf2c.dir/erfc_.c.o.d -o CMakeFiles/vf2c.dir/erfc_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/erfc_.c +[ 11%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scbfix.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/scbfix.c.o -MF CMakeFiles/cgcode.dir/scbfix.c.o.d -o CMakeFiles/cgcode.dir/scbfix.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/scbfix.c -[ 8%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/abort_.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/abort_.c.o -MF CMakeFiles/vf2c.dir/abort_.c.o.d -o CMakeFiles/vf2c.dir/abort_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/abort_.c -[ 8%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sckchb.c.o +[ 11%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sig_die.c.o +[ 11%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/uninit.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sig_die.c.o -MF CMakeFiles/vf2c.dir/sig_die.c.o.d -o CMakeFiles/vf2c.dir/sig_die.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/sig_die.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/uninit.c.o -MF CMakeFiles/vf2c.dir/uninit.c.o.d -o CMakeFiles/vf2c.dir/uninit.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/uninit.c +[ 12%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ci.c.o +[ 12%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sckchb.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time 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Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sonest.c.o -[ 9%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/msstop.c.o +[ 13%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sonest.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sonest.c.o -MF CMakeFiles/cgcode.dir/sonest.c.o.d -o CMakeFiles/cgcode.dir/sonest.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/sonest.c -[ 9%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/exit_.c.o +[ 13%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_dd.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_dd.c.o -MF CMakeFiles/vf2c.dir/pow_dd.c.o.d -o CMakeFiles/vf2c.dir/pow_dd.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/pow_dd.c +[ 13%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/msstop.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/msstop.c.o -MF CMakeFiles/cgcode.dir/msstop.c.o.d -o CMakeFiles/cgcode.dir/msstop.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/msstop.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/exit_.c.o -MF CMakeFiles/vf2c.dir/exit_.c.o.d -o CMakeFiles/vf2c.dir/exit_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/exit_.c -[ 9%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/r1mach.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/r1mach.c.o -MF CMakeFiles/cgcode.dir/r1mach.c.o.d -o CMakeFiles/cgcode.dir/r1mach.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/r1mach.c -[ 10%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sratqr.c.o -[ 10%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgdrv.c.o +[ 14%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sratqr.c.o +[ 14%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/r1mach.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/sratqr.c.o -MF CMakeFiles/cgcode.dir/sratqr.c.o.d -o CMakeFiles/cgcode.dir/sratqr.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/sratqr.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/r1mach.c.o -MF CMakeFiles/cgcode.dir/r1mach.c.o.d -o CMakeFiles/cgcode.dir/r1mach.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/r1mach.c +[ 14%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_di.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_di.c.o -MF CMakeFiles/vf2c.dir/pow_di.c.o.d -o CMakeFiles/vf2c.dir/pow_di.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/pow_di.c +[ 14%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgdrv.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgdrv.c.o -MF CMakeFiles/cgcode.dir/dcgdrv.c.o.d -o CMakeFiles/cgcode.dir/dcgdrv.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dcgdrv.c -[ 11%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/getarg_.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/getarg_.c.o -MF CMakeFiles/vf2c.dir/getarg_.c.o.d -o CMakeFiles/vf2c.dir/getarg_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/getarg_.c -[ 11%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcg.c.o +[ 14%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcg.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcg.c.o -MF CMakeFiles/cgcode.dir/dcg.c.o.d -o CMakeFiles/cgcode.dir/dcg.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dcg.c -[ 11%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/iargc_.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/iargc_.c.o -MF CMakeFiles/vf2c.dir/iargc_.c.o.d -o CMakeFiles/vf2c.dir/iargc_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/iargc_.c -[ 11%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcr.c.o +[ 14%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_hh.c.o +[ 14%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/MarchingCube.C.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/MarchingCube.C.o -MF CMakeFiles/gamer.dir/biom/MarchingCube.C.o.d -o CMakeFiles/gamer.dir/biom/MarchingCube.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/MarchingCube.C +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_hh.c.o -MF CMakeFiles/vf2c.dir/pow_hh.c.o.d -o CMakeFiles/vf2c.dir/pow_hh.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/pow_hh.c +[ 14%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcr.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcr.c.o -MF CMakeFiles/cgcode.dir/dcr.c.o.d -o CMakeFiles/cgcode.dir/dcr.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dcr.c -[ 12%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcrind.c.o +[ 15%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ii.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ii.c.o -MF CMakeFiles/vf2c.dir/pow_ii.c.o.d -o CMakeFiles/vf2c.dir/pow_ii.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/pow_ii.c +[ 16%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcrind.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcrind.c.o -MF CMakeFiles/cgcode.dir/dcrind.c.o.d -o CMakeFiles/cgcode.dir/dcrind.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dcrind.c -[ 13%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/signal_.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/signal_.c.o -MF CMakeFiles/vf2c.dir/signal_.c.o.d -o CMakeFiles/vf2c.dir/signal_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/signal_.c -[ 13%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/getenv_.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/getenv_.c.o -MF CMakeFiles/vf2c.dir/getenv_.c.o.d -o CMakeFiles/vf2c.dir/getenv_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/getenv_.c -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 13%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/PDB2Volume.C.o -[ 13%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcg.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/PDB2Volume.C.o -MF CMakeFiles/gamer.dir/biom/PDB2Volume.C.o.d -o CMakeFiles/gamer.dir/biom/PDB2Volume.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/PDB2Volume.C +[ 17%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o -MF CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o.d -o CMakeFiles/gamer.dir/biom/PDB2Mesh.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/PDB2Mesh.C +[ 17%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ri.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ri.c.o -MF CMakeFiles/vf2c.dir/pow_ri.c.o.d -o CMakeFiles/vf2c.dir/pow_ri.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/pow_ri.c +[ 17%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_zi.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_zi.c.o -MF CMakeFiles/vf2c.dir/pow_zi.c.o.d -o CMakeFiles/vf2c.dir/pow_zi.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/pow_zi.c +[ 17%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcg.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcg.c.o -MF CMakeFiles/cgcode.dir/dpcg.c.o.d -o CMakeFiles/cgcode.dir/dpcg.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dpcg.c -[ 13%] Built target apbslib_swig_compilation -[ 13%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadLattice.C.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadLattice.C.o -MF CMakeFiles/gamer.dir/biom/ReadLattice.C.o.d -o CMakeFiles/gamer.dir/biom/ReadLattice.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadLattice.C -[ 13%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgne.c.o -[ 13%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgnr.c.o +[ 18%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_zz.c.o +[ 18%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgnr.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgnr.c.o -MF CMakeFiles/cgcode.dir/dcgnr.c.o.d -o CMakeFiles/cgcode.dir/dcgnr.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dcgnr.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_zz.c.o -MF CMakeFiles/vf2c.dir/pow_zz.c.o.d -o CMakeFiles/vf2c.dir/pow_zz.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/pow_zz.c +[ 18%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_abs.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_abs.c.o -MF CMakeFiles/vf2c.dir/c_abs.c.o.d -o CMakeFiles/vf2c.dir/c_abs.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_abs.c +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[ 18%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_cos.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_cos.c.o -MF CMakeFiles/vf2c.dir/c_cos.c.o.d -o CMakeFiles/vf2c.dir/c_cos.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_cos.c +[ 18%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/PDB2Volume.C.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/PDB2Volume.C.o -MF CMakeFiles/gamer.dir/biom/PDB2Volume.C.o.d -o CMakeFiles/gamer.dir/biom/PDB2Volume.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/PDB2Volume.C +[ 18%] Built target apbslib_swig_compilation +[ 18%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgne.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgne.c.o -MF CMakeFiles/cgcode.dir/dcgne.c.o.d -o CMakeFiles/cgcode.dir/dcgne.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dcgne.c +[ 18%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_div.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_div.c.o -MF CMakeFiles/vf2c.dir/c_div.c.o.d -o CMakeFiles/vf2c.dir/c_div.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_div.c +[ 19%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_exp.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_exp.c.o -MF CMakeFiles/vf2c.dir/c_exp.c.o.d -o CMakeFiles/vf2c.dir/c_exp.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_exp.c +[ 19%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_log.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_log.c.o -MF CMakeFiles/vf2c.dir/c_log.c.o.d -o CMakeFiles/vf2c.dir/c_log.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_log.c +[ 19%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_sin.c.o +[ 20%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgnr.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_sin.c.o -MF CMakeFiles/vf2c.dir/c_sin.c.o.d -o CMakeFiles/vf2c.dir/c_sin.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_sin.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgnr.c.o -MF CMakeFiles/cgcode.dir/dpcgnr.c.o.d -o CMakeFiles/cgcode.dir/dpcgnr.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dpcgnr.c +[ 20%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgne.c.o +[ 20%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dppcg.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgne.c.o -MF CMakeFiles/cgcode.dir/dpcgne.c.o.d -o CMakeFiles/cgcode.dir/dpcgne.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dpcgne.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dppcg.c.o -MF CMakeFiles/cgcode.dir/dppcg.c.o.d -o CMakeFiles/cgcode.dir/dppcg.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dppcg.c +[ 21%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgca.c.o +[ 22%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_sqrt.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgca.c.o -MF CMakeFiles/cgcode.dir/dpcgca.c.o.d -o CMakeFiles/cgcode.dir/dpcgca.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dpcgca.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_sqrt.c.o -MF CMakeFiles/vf2c.dir/c_sqrt.c.o.d -o CMakeFiles/vf2c.dir/c_sqrt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_sqrt.c +[ 22%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_abs.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_abs.c.o -MF CMakeFiles/vf2c.dir/z_abs.c.o.d -o CMakeFiles/vf2c.dir/z_abs.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_abs.c +[ 22%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_cos.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_cos.c.o -MF CMakeFiles/vf2c.dir/z_cos.c.o.d -o CMakeFiles/vf2c.dir/z_cos.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_cos.c +[ 22%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/ddpchb.c.o +[ 22%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_div.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/ddpchb.c.o -MF CMakeFiles/cgcode.dir/ddpchb.c.o.d -o CMakeFiles/cgcode.dir/ddpchb.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/ddpchb.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_div.c.o -MF CMakeFiles/vf2c.dir/z_div.c.o.d -o CMakeFiles/vf2c.dir/z_div.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_div.c +[ 23%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_exp.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_exp.c.o -MF CMakeFiles/vf2c.dir/z_exp.c.o.d -o CMakeFiles/vf2c.dir/z_exp.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_exp.c +[ 23%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_log.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_log.c.o -MF CMakeFiles/vf2c.dir/z_log.c.o.d -o CMakeFiles/vf2c.dir/z_log.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_log.c +[ 23%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcbfix.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcbfix.c.o -MF CMakeFiles/cgcode.dir/dcbfix.c.o.d -o CMakeFiles/cgcode.dir/dcbfix.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dcbfix.c +[ 23%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_sin.c.o /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp: In member function 'void tetgenmesh::constrainedfacets()': /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp:20804:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 20804 | equatptlist = new list("point *"); @@ -1885,347 +2036,276 @@ /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp:20811:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 20811 | aboveptlist = new list("point *"); | ^~~~~~~~~ -[ 13%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_stop.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_stop.c.o -MF CMakeFiles/vf2c.dir/s_stop.c.o.d -o CMakeFiles/vf2c.dir/s_stop.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/s_stop.c -[ 14%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgnr.c.o -[ 14%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_paus.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_paus.c.o -MF CMakeFiles/vf2c.dir/s_paus.c.o.d -o CMakeFiles/vf2c.dir/s_paus.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/s_paus.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgnr.c.o -MF CMakeFiles/cgcode.dir/dpcgnr.c.o.d -o CMakeFiles/cgcode.dir/dpcgnr.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dpcgnr.c -[ 14%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgne.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dpcgne.c.o -MF CMakeFiles/cgcode.dir/dpcgne.c.o.d -o CMakeFiles/cgcode.dir/dpcgne.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dpcgne.c -[ 14%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/system_.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/system_.c.o -MF CMakeFiles/vf2c.dir/system_.c.o.d -o CMakeFiles/vf2c.dir/system_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/system_.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_sin.c.o -MF CMakeFiles/vf2c.dir/z_sin.c.o.d -o CMakeFiles/vf2c.dir/z_sin.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_sin.c +[ 24%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_sqrt.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_sqrt.c.o -MF CMakeFiles/vf2c.dir/z_sqrt.c.o.d -o CMakeFiles/vf2c.dir/z_sqrt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_sqrt.c +[ 24%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_abs.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_abs.c.o -MF CMakeFiles/vf2c.dir/r_abs.c.o.d -o CMakeFiles/vf2c.dir/r_abs.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_abs.c +[ 24%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dckchb.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dckchb.c.o -MF CMakeFiles/cgcode.dir/dckchb.c.o.d -o CMakeFiles/cgcode.dir/dckchb.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dckchb.c +[ 25%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgchk.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgchk.c.o -MF CMakeFiles/cgcode.dir/dcgchk.c.o.d -o CMakeFiles/cgcode.dir/dcgchk.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dcgchk.c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp: In member function 'long int tetgenmesh::reconstructmesh()': /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen/tetgen.cpp:24383:25: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 24383 | markerlist = new list("int"); | ^~~~~ -[ 14%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dppcg.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dppcg.c.o -MF CMakeFiles/cgcode.dir/dppcg.c.o.d -o CMakeFiles/cgcode.dir/dppcg.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dppcg.c -[ 15%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/cabs.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT 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/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dpcgca.c -[ 16%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/derf_.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/derf_.c.o -MF CMakeFiles/vf2c.dir/derf_.c.o.d -o CMakeFiles/vf2c.dir/derf_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/derf_.c -[ 16%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/ddpchb.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/ddpchb.c.o -MF CMakeFiles/cgcode.dir/ddpchb.c.o.d -o CMakeFiles/cgcode.dir/ddpchb.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/ddpchb.c -[ 17%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/erf_.c.o -[ 17%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/derfc_.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/erf_.c.o -MF CMakeFiles/vf2c.dir/erf_.c.o.d -o CMakeFiles/vf2c.dir/erf_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/erf_.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/derfc_.c.o -MF CMakeFiles/vf2c.dir/derfc_.c.o.d -o CMakeFiles/vf2c.dir/derfc_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/derfc_.c -[ 17%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/erfc_.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/erfc_.c.o -MF CMakeFiles/vf2c.dir/erfc_.c.o.d -o CMakeFiles/vf2c.dir/erfc_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/erfc_.c -[ 17%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcbfix.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcbfix.c.o -MF CMakeFiles/cgcode.dir/dcbfix.c.o.d -o CMakeFiles/cgcode.dir/dcbfix.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dcbfix.c -[ 17%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dckchb.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dckchb.c.o -MF CMakeFiles/cgcode.dir/dckchb.c.o.d -o CMakeFiles/cgcode.dir/dckchb.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dckchb.c -[ 17%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sig_die.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sig_die.c.o -MF CMakeFiles/vf2c.dir/sig_die.c.o.d -o CMakeFiles/vf2c.dir/sig_die.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/sig_die.c -[ 17%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/uninit.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT 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_deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgchk.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dcgchk.c.o -MF CMakeFiles/cgcode.dir/dcgchk.c.o.d -o CMakeFiles/cgcode.dir/dcgchk.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dcgchk.c -[ 19%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/donest.c.o +[ 25%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_acos.c.o +cd 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-I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/donest.c.o -MF CMakeFiles/cgcode.dir/donest.c.o.d -o CMakeFiles/cgcode.dir/donest.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/donest.c -[ 19%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadPDB.C.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadPDB.C.o -MF CMakeFiles/gamer.dir/biom/ReadPDB.C.o.d -o CMakeFiles/gamer.dir/biom/ReadPDB.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadPDB.C -[ 19%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/mdstop.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_asin.c.o -MF CMakeFiles/vf2c.dir/r_asin.c.o.d -o CMakeFiles/vf2c.dir/r_asin.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_asin.c +[ 25%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/mdstop.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC 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Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/d1mach.c.o +[ 26%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_atan.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_atan.c.o -MF CMakeFiles/vf2c.dir/r_atan.c.o.d -o CMakeFiles/vf2c.dir/r_atan.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_atan.c +[ 27%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/d1mach.c.o cd 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/usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadLattice.C.o -MF CMakeFiles/gamer.dir/biom/ReadLattice.C.o.d -o CMakeFiles/gamer.dir/biom/ReadLattice.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadLattice.C +[ 27%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dratqr.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/dratqr.c.o -MF CMakeFiles/cgcode.dir/dratqr.c.o.d -o CMakeFiles/cgcode.dir/dratqr.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/dratqr.c -[ 20%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_dd.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_dd.c.o -MF CMakeFiles/vf2c.dir/pow_dd.c.o.d -o CMakeFiles/vf2c.dir/pow_dd.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/pow_dd.c -[ 20%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/depsln.c.o -[ 20%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_hh.c.o +[ 27%] Building C object _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/depsln.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cc -Dcgcode_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/cgcode/CMakeFiles/cgcode.dir/depsln.c.o -MF CMakeFiles/cgcode.dir/depsln.c.o.d -o CMakeFiles/cgcode.dir/depsln.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode/depsln.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_hh.c.o -MF CMakeFiles/vf2c.dir/pow_hh.c.o.d 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_deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_atn2.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_atn2.c.o -MF CMakeFiles/vf2c.dir/r_atn2.c.o.d -o CMakeFiles/vf2c.dir/r_atn2.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_atn2.c +[ 27%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cnjg.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cnjg.c.o -MF CMakeFiles/vf2c.dir/r_cnjg.c.o.d -o CMakeFiles/vf2c.dir/r_cnjg.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_cnjg.c +[ 27%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadPDB.C.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadPDB.C.o -MF CMakeFiles/gamer.dir/biom/ReadPDB.C.o.d -o CMakeFiles/gamer.dir/biom/ReadPDB.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadPDB.C +[ 28%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadWriteMesh.C.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/ReadWriteMesh.C.o -MF CMakeFiles/gamer.dir/biom/ReadWriteMesh.C.o.d -o CMakeFiles/gamer.dir/biom/ReadWriteMesh.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C -[ 21%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/RegionGrowing.C.o +[ 28%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/RegionGrowing.C.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/RegionGrowing.C.o -MF CMakeFiles/gamer.dir/biom/RegionGrowing.C.o.d -o CMakeFiles/gamer.dir/biom/RegionGrowing.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/RegionGrowing.C -[ 21%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfaceMesh.C.o -[ 22%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ii.c.o +[ 28%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfaceMesh.C.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && 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-I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ii.c.o -MF CMakeFiles/vf2c.dir/pow_ii.c.o.d -o CMakeFiles/vf2c.dir/pow_ii.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/pow_ii.c -[ 22%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ri.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_ri.c.o -MF CMakeFiles/vf2c.dir/pow_ri.c.o.d -o CMakeFiles/vf2c.dir/pow_ri.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/pow_ri.c -[ 22%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_zi.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_zi.c.o -MF CMakeFiles/vf2c.dir/pow_zi.c.o.d -o CMakeFiles/vf2c.dir/pow_zi.c.o -c 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/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/SurfExtract.C -[ 24%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_zz.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/pow_zz.c.o -MF CMakeFiles/vf2c.dir/pow_zz.c.o.d -o CMakeFiles/vf2c.dir/pow_zz.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/pow_zz.c -[ 24%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_abs.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_abs.c.o -MF CMakeFiles/vf2c.dir/c_abs.c.o.d -o CMakeFiles/vf2c.dir/c_abs.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_abs.c -[ 24%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_cos.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_cos.c.o -MF CMakeFiles/vf2c.dir/c_cos.c.o.d -o CMakeFiles/vf2c.dir/c_cos.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_cos.c -[ 24%] Linking C shared library libcgcode.so -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cmake -E cmake_link_script CMakeFiles/cgcode.dir/link.txt --verbose=1 -[ 24%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfRefine.C.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfRefine.C.o -MF CMakeFiles/gamer.dir/biom/SurfRefine.C.o.d -o CMakeFiles/gamer.dir/biom/SurfRefine.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/SurfRefine.C -/usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libcgcode.so.1.9 -o libcgcode.so.1.9.3 CMakeFiles/cgcode.dir/scgdrv.c.o CMakeFiles/cgcode.dir/scg.c.o CMakeFiles/cgcode.dir/scr.c.o 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CMakeFiles/cgcode.dir/dcgchk.c.o CMakeFiles/cgcode.dir/donest.c.o CMakeFiles/cgcode.dir/mdstop.c.o CMakeFiles/cgcode.dir/d1mach.c.o CMakeFiles/cgcode.dir/dratqr.c.o CMakeFiles/cgcode.dir/depsln.c.o -[ 25%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_exp.c.o -[ 25%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_div.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_div.c.o -MF CMakeFiles/vf2c.dir/c_div.c.o.d -o CMakeFiles/vf2c.dir/c_div.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_div.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_exp.c.o -MF CMakeFiles/vf2c.dir/c_exp.c.o.d -o CMakeFiles/vf2c.dir/c_exp.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_exp.c -[ 25%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_log.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_log.c.o -MF CMakeFiles/vf2c.dir/c_log.c.o.d -o CMakeFiles/vf2c.dir/c_log.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_log.c -[ 25%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfSmooth.C.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfSmooth.C.o -MF CMakeFiles/gamer.dir/biom/SurfSmooth.C.o.d -o CMakeFiles/gamer.dir/biom/SurfSmooth.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/SurfSmooth.C -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cmake -E cmake_symlink_library libcgcode.so.1.9.3 libcgcode.so.1.9 libcgcode.so -[ 25%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_sin.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_sin.c.o -MF CMakeFiles/vf2c.dir/c_sin.c.o.d -o CMakeFiles/vf2c.dir/c_sin.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_sin.c -[ 26%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_sqrt.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/c_sqrt.c.o -MF CMakeFiles/vf2c.dir/c_sqrt.c.o.d -o CMakeFiles/vf2c.dir/c_sqrt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/c_sqrt.c -[ 26%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_abs.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_abs.c.o -MF CMakeFiles/vf2c.dir/z_abs.c.o.d -o CMakeFiles/vf2c.dir/z_abs.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_abs.c -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C: In function 'SurfaceMesh* SurfaceMesh_readOFF(char*)': -/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:401:14: warning: too many arguments for format [-Wformat-extra-args] - 401 | printf("Read error. Expected 3 integers for the first simplex.\n", n); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:494:14: warning: too many arguments for format [-Wformat-extra-args] - 494 | printf("Read error. Expected 4 integers for the first simplex.\n", n); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 26%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_cos.c.o -/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C: In function 'GemMesh* GemMesh_fromSurfaceMesh(SurfaceMesh*, char*)': -/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:754:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 754 | in.save_nodes("plc"); - | ^~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:755:16: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 755 | in.save_poly("plc"); - | ^~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:761:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 761 | out.save_nodes("result"); - | ^~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:762:21: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 762 | out.save_elements("result"); - | ^~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:763:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 763 | out.save_faces("result"); - | ^~~~~~~~ -[ 26%] Built target cgcode -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_cos.c.o -MF CMakeFiles/vf2c.dir/z_cos.c.o.d -o CMakeFiles/vf2c.dir/z_cos.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_cos.c -[ 26%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_div.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_div.c.o -MF CMakeFiles/vf2c.dir/z_div.c.o.d -o CMakeFiles/vf2c.dir/z_div.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_div.c -[ 27%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_exp.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_exp.c.o -MF CMakeFiles/vf2c.dir/z_exp.c.o.d -o CMakeFiles/vf2c.dir/z_exp.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_exp.c -[ 27%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_log.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_log.c.o -MF CMakeFiles/vf2c.dir/z_log.c.o.d -o CMakeFiles/vf2c.dir/z_log.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_log.c -[ 27%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_sin.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_sin.c.o -MF CMakeFiles/vf2c.dir/z_sin.c.o.d -o CMakeFiles/vf2c.dir/z_sin.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_sin.c -[ 28%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_sqrt.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/z_sqrt.c.o -MF CMakeFiles/vf2c.dir/z_sqrt.c.o.d -o CMakeFiles/vf2c.dir/z_sqrt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/z_sqrt.c -[ 28%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_abs.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_abs.c.o -MF CMakeFiles/vf2c.dir/r_abs.c.o.d -o CMakeFiles/vf2c.dir/r_abs.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_abs.c -[ 28%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_acos.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_acos.c.o -MF CMakeFiles/vf2c.dir/r_acos.c.o.d -o CMakeFiles/vf2c.dir/r_acos.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_acos.c -[ 28%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_asin.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_asin.c.o -MF CMakeFiles/vf2c.dir/r_asin.c.o.d -o CMakeFiles/vf2c.dir/r_asin.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_asin.c -[ 28%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_atn2.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_atn2.c.o -MF CMakeFiles/vf2c.dir/r_atn2.c.o.d -o CMakeFiles/vf2c.dir/r_atn2.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_atn2.c -[ 28%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cnjg.c.o -[ 29%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_atan.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cnjg.c.o -MF CMakeFiles/vf2c.dir/r_cnjg.c.o.d -o CMakeFiles/vf2c.dir/r_cnjg.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_cnjg.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_atan.c.o -MF CMakeFiles/vf2c.dir/r_atan.c.o.d -o CMakeFiles/vf2c.dir/r_atan.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_atan.c -[ 30%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cos.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cos.c.o -MF CMakeFiles/vf2c.dir/r_cos.c.o.d -o CMakeFiles/vf2c.dir/r_cos.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_cos.c -[ 30%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cosh.c.o -[ 30%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_dim.c.o +[ 28%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cosh.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cosh.c.o -MF CMakeFiles/vf2c.dir/r_cosh.c.o.d -o CMakeFiles/vf2c.dir/r_cosh.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_cosh.c +[ 28%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_dim.c.o +[ 29%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cos.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_cos.c.o -MF CMakeFiles/vf2c.dir/r_cos.c.o.d -o CMakeFiles/vf2c.dir/r_cos.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_cos.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_dim.c.o -MF CMakeFiles/vf2c.dir/r_dim.c.o.d -o CMakeFiles/vf2c.dir/r_dim.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_dim.c -[ 30%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_exp.c.o -[ 31%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_imag.c.o +[ 29%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_exp.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_exp.c.o -MF CMakeFiles/vf2c.dir/r_exp.c.o.d -o CMakeFiles/vf2c.dir/r_exp.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_exp.c +[ 30%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_imag.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_imag.c.o -MF CMakeFiles/vf2c.dir/r_imag.c.o.d -o CMakeFiles/vf2c.dir/r_imag.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_imag.c -[ 31%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_int.c.o +[ 30%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_int.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_int.c.o -MF CMakeFiles/vf2c.dir/r_int.c.o.d -o CMakeFiles/vf2c.dir/r_int.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_int.c -[ 31%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_lg10.c.o -[ 32%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_log.c.o +[ 30%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_lg10.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_lg10.c.o -MF CMakeFiles/vf2c.dir/r_lg10.c.o.d -o CMakeFiles/vf2c.dir/r_lg10.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_lg10.c +[ 31%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfExtract.C.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfExtract.C.o -MF CMakeFiles/gamer.dir/biom/SurfExtract.C.o.d -o CMakeFiles/gamer.dir/biom/SurfExtract.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/SurfExtract.C +[ 32%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_log.c.o +[ 32%] Linking C shared library libcgcode.so cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_log.c.o -MF CMakeFiles/vf2c.dir/r_log.c.o.d -o CMakeFiles/vf2c.dir/r_log.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_log.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cmake -E cmake_link_script CMakeFiles/cgcode.dir/link.txt --verbose=1 +/usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libcgcode.so.1.9 -o libcgcode.so.1.9.3 CMakeFiles/cgcode.dir/scgdrv.c.o CMakeFiles/cgcode.dir/scg.c.o CMakeFiles/cgcode.dir/scr.c.o CMakeFiles/cgcode.dir/scrind.c.o CMakeFiles/cgcode.dir/spcg.c.o CMakeFiles/cgcode.dir/scgnr.c.o CMakeFiles/cgcode.dir/scgne.c.o CMakeFiles/cgcode.dir/spcgnr.c.o CMakeFiles/cgcode.dir/spcgne.c.o CMakeFiles/cgcode.dir/sppcg.c.o CMakeFiles/cgcode.dir/spcgca.c.o CMakeFiles/cgcode.dir/sdpchb.c.o CMakeFiles/cgcode.dir/scbfix.c.o CMakeFiles/cgcode.dir/sckchb.c.o CMakeFiles/cgcode.dir/scgchk.c.o CMakeFiles/cgcode.dir/sonest.c.o CMakeFiles/cgcode.dir/msstop.c.o CMakeFiles/cgcode.dir/r1mach.c.o CMakeFiles/cgcode.dir/sratqr.c.o CMakeFiles/cgcode.dir/dcgdrv.c.o CMakeFiles/cgcode.dir/dcg.c.o CMakeFiles/cgcode.dir/dcr.c.o CMakeFiles/cgcode.dir/dcrind.c.o CMakeFiles/cgcode.dir/dpcg.c.o CMakeFiles/cgcode.dir/dcgnr.c.o CMakeFiles/cgcode.dir/dcgne.c.o CMakeFiles/cgcode.dir/dpcgnr.c.o CMakeFiles/cgcode.dir/dpcgne.c.o CMakeFiles/cgcode.dir/dppcg.c.o CMakeFiles/cgcode.dir/dpcgca.c.o CMakeFiles/cgcode.dir/ddpchb.c.o CMakeFiles/cgcode.dir/dcbfix.c.o CMakeFiles/cgcode.dir/dckchb.c.o CMakeFiles/cgcode.dir/dcgchk.c.o CMakeFiles/cgcode.dir/donest.c.o CMakeFiles/cgcode.dir/mdstop.c.o CMakeFiles/cgcode.dir/d1mach.c.o CMakeFiles/cgcode.dir/dratqr.c.o CMakeFiles/cgcode.dir/depsln.c.o [ 32%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_mod.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_mod.c.o -MF CMakeFiles/vf2c.dir/r_mod.c.o.d -o CMakeFiles/vf2c.dir/r_mod.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_mod.c [ 32%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_nint.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_nint.c.o -MF CMakeFiles/vf2c.dir/r_nint.c.o.d -o CMakeFiles/vf2c.dir/r_nint.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_nint.c +/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/PDB2Volume.C: In function 'float PDB2Volume(char*, float**, int*, int*, int*, float*, float*, ATOM**, int*, char)': +/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/PDB2Volume.C:85:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] + 85 | fscanf(fp,"%d\n",&m); + | ~~~~~~^~~~~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/PDB2Volume.C:88:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] + 88 | fscanf(fp,"%f %f %f %f\n",&x,&y,&z,&radius); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/cgcode && /usr/bin/cmake -E cmake_symlink_library libcgcode.so.1.9.3 libcgcode.so.1.9 libcgcode.so [ 32%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sign.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sign.c.o -MF CMakeFiles/vf2c.dir/r_sign.c.o.d -o CMakeFiles/vf2c.dir/r_sign.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_sign.c +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' [ 33%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sin.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sin.c.o -MF CMakeFiles/vf2c.dir/r_sin.c.o.d -o CMakeFiles/vf2c.dir/r_sin.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_sin.c +[ 33%] Built target cgcode [ 33%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sinh.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sinh.c.o -MF CMakeFiles/vf2c.dir/r_sinh.c.o.d -o CMakeFiles/vf2c.dir/r_sinh.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_sinh.c [ 33%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sqrt.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_sqrt.c.o -MF CMakeFiles/vf2c.dir/r_sqrt.c.o.d -o CMakeFiles/vf2c.dir/r_sqrt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_sqrt.c +[ 33%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfRefine.C.o [ 34%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_tan.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfRefine.C.o -MF CMakeFiles/gamer.dir/biom/SurfRefine.C.o.d -o CMakeFiles/gamer.dir/biom/SurfRefine.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/SurfRefine.C cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_tan.c.o -MF CMakeFiles/vf2c.dir/r_tan.c.o.d -o CMakeFiles/vf2c.dir/r_tan.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_tan.c [ 34%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_tanh.c.o -[ 34%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_abs.c.o -[ 34%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_acos.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/r_tanh.c.o -MF CMakeFiles/vf2c.dir/r_tanh.c.o.d -o CMakeFiles/vf2c.dir/r_tanh.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/r_tanh.c +[ 34%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_abs.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_abs.c.o -MF CMakeFiles/vf2c.dir/d_abs.c.o.d -o CMakeFiles/vf2c.dir/d_abs.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_abs.c -[ 35%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_asin.c.o +[ 34%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_acos.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_acos.c.o -MF CMakeFiles/vf2c.dir/d_acos.c.o.d -o CMakeFiles/vf2c.dir/d_acos.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_acos.c +[ 35%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_asin.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_asin.c.o -MF CMakeFiles/vf2c.dir/d_asin.c.o.d -o CMakeFiles/vf2c.dir/d_asin.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_asin.c [ 35%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_atan.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_atan.c.o -MF CMakeFiles/vf2c.dir/d_atan.c.o.d -o CMakeFiles/vf2c.dir/d_atan.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_atan.c +[ 35%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_atn2.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_atn2.c.o -MF CMakeFiles/vf2c.dir/d_atn2.c.o.d -o CMakeFiles/vf2c.dir/d_atn2.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_atn2.c +/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C: In function 'SurfaceMesh* SurfaceMesh_readOFF(char*)': +/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:401:14: warning: too many arguments for format [-Wformat-extra-args] + 401 | printf("Read error. Expected 3 integers for the first simplex.\n", n); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:494:14: warning: too many arguments for format [-Wformat-extra-args] + 494 | printf("Read error. Expected 4 integers for the first simplex.\n", n); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C: In function 'GemMesh* GemMesh_fromSurfaceMesh(SurfaceMesh*, char*)': +/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:754:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 754 | in.save_nodes("plc"); + | ^~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:755:16: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 755 | in.save_poly("plc"); + | ^~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:761:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 761 | out.save_nodes("result"); + | ^~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:762:21: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 762 | out.save_elements("result"); + | ^~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/ReadWriteMesh.C:763:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 763 | out.save_faces("result"); + | ^~~~~~~~ +[ 35%] Building CXX object _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfSmooth.C.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/c++ -Dgamer_EXPORTS -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/triangle -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/tetgen -I/build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/gamer/src/CMakeFiles/gamer.dir/biom/SurfSmooth.C.o -MF CMakeFiles/gamer.dir/biom/SurfSmooth.C.o.d -o CMakeFiles/gamer.dir/biom/SurfSmooth.C.o -c /build/apbs-3.4.1/debian/external_deps/fetk/gamer/src/biom/SurfSmooth.C [ 35%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_cnjg.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_cnjg.c.o -MF CMakeFiles/vf2c.dir/d_cnjg.c.o.d -o CMakeFiles/vf2c.dir/d_cnjg.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_cnjg.c [ 36%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_cos.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_cos.c.o -MF CMakeFiles/vf2c.dir/d_cos.c.o.d -o CMakeFiles/vf2c.dir/d_cos.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_cos.c -[ 36%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_atn2.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_atn2.c.o -MF CMakeFiles/vf2c.dir/d_atn2.c.o.d -o CMakeFiles/vf2c.dir/d_atn2.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_atn2.c [ 36%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_cosh.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_cosh.c.o -MF CMakeFiles/vf2c.dir/d_cosh.c.o.d -o CMakeFiles/vf2c.dir/d_cosh.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_cosh.c [ 36%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_dim.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_dim.c.o -MF CMakeFiles/vf2c.dir/d_dim.c.o.d -o CMakeFiles/vf2c.dir/d_dim.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_dim.c [ 37%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_exp.c.o -[ 37%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_imag.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_exp.c.o -MF CMakeFiles/vf2c.dir/d_exp.c.o.d -o CMakeFiles/vf2c.dir/d_exp.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_exp.c -[ 37%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_int.c.o +[ 37%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_imag.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_imag.c.o -MF CMakeFiles/vf2c.dir/d_imag.c.o.d -o CMakeFiles/vf2c.dir/d_imag.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_imag.c -[ 37%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_lg10.c.o +[ 37%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_int.c.o cd 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-ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_lg10.c.o -MF CMakeFiles/vf2c.dir/d_lg10.c.o.d -o CMakeFiles/vf2c.dir/d_lg10.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_lg10.c -[ 37%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_mod.c.o +[ 38%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_log.c.o +[ 38%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_mod.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_mod.c.o -MF CMakeFiles/vf2c.dir/d_mod.c.o.d -o CMakeFiles/vf2c.dir/d_mod.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_mod.c -[ 37%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_nint.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_log.c.o -MF CMakeFiles/vf2c.dir/d_log.c.o.d 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_deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_prod.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_log.c.o -MF CMakeFiles/vf2c.dir/d_log.c.o.d -o CMakeFiles/vf2c.dir/d_log.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_log.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_prod.c.o -MF CMakeFiles/vf2c.dir/d_prod.c.o.d -o CMakeFiles/vf2c.dir/d_prod.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_prod.c [ 39%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sign.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sign.c.o -MF CMakeFiles/vf2c.dir/d_sign.c.o.d -o CMakeFiles/vf2c.dir/d_sign.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_sign.c [ 39%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sin.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sin.c.o -MF CMakeFiles/vf2c.dir/d_sin.c.o.d -o CMakeFiles/vf2c.dir/d_sin.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_sin.c -[ 39%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sinh.c.o -cd 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/usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sqrt.c.o -MF CMakeFiles/vf2c.dir/d_sqrt.c.o.d -o CMakeFiles/vf2c.dir/d_sqrt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_sqrt.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_tan.c.o -MF CMakeFiles/vf2c.dir/d_tan.c.o.d -o CMakeFiles/vf2c.dir/d_tan.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_tan.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_sinh.c.o -MF CMakeFiles/vf2c.dir/d_sinh.c.o.d -o CMakeFiles/vf2c.dir/d_sinh.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_sinh.c [ 40%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_tanh.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_tan.c.o -MF CMakeFiles/vf2c.dir/d_tan.c.o.d -o CMakeFiles/vf2c.dir/d_tan.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_tan.c [ 41%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_abs.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/d_tanh.c.o -MF CMakeFiles/vf2c.dir/d_tanh.c.o.d -o CMakeFiles/vf2c.dir/d_tanh.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/d_tanh.c -[ 41%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_dim.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_abs.c.o -MF CMakeFiles/vf2c.dir/i_abs.c.o.d -o CMakeFiles/vf2c.dir/i_abs.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/i_abs.c +[ 41%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_dim.c.o [ 41%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_dnnt.c.o +[ 41%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_indx.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_dim.c.o -MF CMakeFiles/vf2c.dir/i_dim.c.o.d -o CMakeFiles/vf2c.dir/i_dim.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/i_dim.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_dnnt.c.o -MF CMakeFiles/vf2c.dir/i_dnnt.c.o.d -o CMakeFiles/vf2c.dir/i_dnnt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/i_dnnt.c -[ 41%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_indx.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_indx.c.o -MF CMakeFiles/vf2c.dir/i_indx.c.o.d -o CMakeFiles/vf2c.dir/i_indx.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/i_indx.c [ 42%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_len.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_len.c.o -MF CMakeFiles/vf2c.dir/i_len.c.o.d -o CMakeFiles/vf2c.dir/i_len.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/i_len.c [ 42%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_mod.c.o -[ 42%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_nint.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_mod.c.o -MF CMakeFiles/vf2c.dir/i_mod.c.o.d -o CMakeFiles/vf2c.dir/i_mod.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/i_mod.c -[ 43%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_sign.c.o -[ 43%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lbitshft.c.o -[ 43%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lbitbits.c.o +[ 42%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_nint.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_nint.c.o -MF CMakeFiles/vf2c.dir/i_nint.c.o.d -o CMakeFiles/vf2c.dir/i_nint.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/i_nint.c -[ 43%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_abs.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_sign.c.o -MF CMakeFiles/vf2c.dir/i_sign.c.o.d -o CMakeFiles/vf2c.dir/i_sign.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/i_sign.c -[ 44%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_dim.c.o +[ 42%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lbitbits.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lbitbits.c.o -MF CMakeFiles/vf2c.dir/lbitbits.c.o.d -o CMakeFiles/vf2c.dir/lbitbits.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/lbitbits.c +[ 42%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lbitshft.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lbitshft.c.o -MF CMakeFiles/vf2c.dir/lbitshft.c.o.d -o CMakeFiles/vf2c.dir/lbitshft.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/lbitshft.c +[ 43%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_sign.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/i_sign.c.o -MF CMakeFiles/vf2c.dir/i_sign.c.o.d -o CMakeFiles/vf2c.dir/i_sign.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/i_sign.c +[ 43%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_abs.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_abs.c.o -MF CMakeFiles/vf2c.dir/h_abs.c.o.d -o CMakeFiles/vf2c.dir/h_abs.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/h_abs.c +[ 44%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_dim.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_dim.c.o -MF CMakeFiles/vf2c.dir/h_dim.c.o.d -o CMakeFiles/vf2c.dir/h_dim.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/h_dim.c [ 44%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_dnnt.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_dnnt.c.o -MF CMakeFiles/vf2c.dir/h_dnnt.c.o.d -o CMakeFiles/vf2c.dir/h_dnnt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/h_dnnt.c -[ 44%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_indx.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_indx.c.o -MF CMakeFiles/vf2c.dir/h_indx.c.o.d -o CMakeFiles/vf2c.dir/h_indx.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/h_indx.c [ 45%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_len.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_dnnt.c.o -MF CMakeFiles/vf2c.dir/h_dnnt.c.o.d -o CMakeFiles/vf2c.dir/h_dnnt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/h_dnnt.c +[ 45%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_indx.c.o [ 45%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_mod.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_mod.c.o -MF CMakeFiles/vf2c.dir/h_mod.c.o.d -o CMakeFiles/vf2c.dir/h_mod.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/h_mod.c -[ 45%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_sign.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_indx.c.o -MF CMakeFiles/vf2c.dir/h_indx.c.o.d -o CMakeFiles/vf2c.dir/h_indx.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/h_indx.c [ 45%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_nint.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_len.c.o -MF CMakeFiles/vf2c.dir/h_len.c.o.d -o CMakeFiles/vf2c.dir/h_len.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/h_len.c +[ 45%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_sign.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_mod.c.o -MF CMakeFiles/vf2c.dir/h_mod.c.o.d -o CMakeFiles/vf2c.dir/h_mod.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/h_mod.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_nint.c.o -MF CMakeFiles/vf2c.dir/h_nint.c.o.d -o CMakeFiles/vf2c.dir/h_nint.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/h_nint.c -[ 46%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_ge.c.o -[ 46%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_gt.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/h_sign.c.o -MF CMakeFiles/vf2c.dir/h_sign.c.o.d -o CMakeFiles/vf2c.dir/h_sign.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/h_sign.c +[ 46%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_ge.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_ge.c.o -MF CMakeFiles/vf2c.dir/l_ge.c.o.d -o CMakeFiles/vf2c.dir/l_ge.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/l_ge.c +[ 46%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_gt.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_gt.c.o -MF CMakeFiles/vf2c.dir/l_gt.c.o.d -o CMakeFiles/vf2c.dir/l_gt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/l_gt.c [ 47%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_lt.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_lt.c.o -MF CMakeFiles/vf2c.dir/l_lt.c.o.d -o CMakeFiles/vf2c.dir/l_lt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/l_lt.c [ 47%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_le.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/l_le.c.o -MF CMakeFiles/vf2c.dir/l_le.c.o.d -o CMakeFiles/vf2c.dir/l_le.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/l_le.c -[ 47%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_gt.c.o [ 47%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_ge.c.o -[ 47%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_le.c.o -[ 48%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_lt.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_ge.c.o -MF CMakeFiles/vf2c.dir/hl_ge.c.o.d -o CMakeFiles/vf2c.dir/hl_ge.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/hl_ge.c +[ 47%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_gt.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_gt.c.o -MF CMakeFiles/vf2c.dir/hl_gt.c.o.d -o CMakeFiles/vf2c.dir/hl_gt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/hl_gt.c -[ 48%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ef1asc_.c.o +[ 47%] Building C object 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-I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/hl_lt.c.o -MF CMakeFiles/vf2c.dir/hl_lt.c.o.d -o CMakeFiles/vf2c.dir/hl_lt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/hl_lt.c +[ 48%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ef1asc_.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ef1asc_.c.o -MF CMakeFiles/vf2c.dir/ef1asc_.c.o.d -o CMakeFiles/vf2c.dir/ef1asc_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/ef1asc_.c [ 48%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ef1cmc_.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ef1cmc_.c.o -MF CMakeFiles/vf2c.dir/ef1cmc_.c.o.d -o CMakeFiles/vf2c.dir/ef1cmc_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/ef1cmc_.c [ 48%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/f77_aloc.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/f77_aloc.c.o -MF CMakeFiles/vf2c.dir/f77_aloc.c.o.d -o CMakeFiles/vf2c.dir/f77_aloc.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/f77_aloc.c [ 49%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_cat.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_cat.c.o -MF CMakeFiles/vf2c.dir/s_cat.c.o.d -o CMakeFiles/vf2c.dir/s_cat.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/s_cat.c [ 49%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_cmp.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/f77_aloc.c.o -MF CMakeFiles/vf2c.dir/f77_aloc.c.o.d -o CMakeFiles/vf2c.dir/f77_aloc.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/f77_aloc.c [ 49%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_copy.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_cat.c.o -MF CMakeFiles/vf2c.dir/s_cat.c.o.d -o CMakeFiles/vf2c.dir/s_cat.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/s_cat.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_cmp.c.o -MF CMakeFiles/vf2c.dir/s_cmp.c.o.d -o CMakeFiles/vf2c.dir/s_cmp.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/s_cmp.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_copy.c.o -MF CMakeFiles/vf2c.dir/s_copy.c.o.d -o CMakeFiles/vf2c.dir/s_copy.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/s_copy.c [ 50%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dtime_.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/s_copy.c.o -MF CMakeFiles/vf2c.dir/s_copy.c.o.d -o CMakeFiles/vf2c.dir/s_copy.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/s_copy.c [ 50%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/etime_.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dtime_.c.o -MF CMakeFiles/vf2c.dir/dtime_.c.o.d -o CMakeFiles/vf2c.dir/dtime_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/dtime_.c -[ 50%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/backspac.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/etime_.c.o -MF CMakeFiles/vf2c.dir/etime_.c.o.d -o CMakeFiles/vf2c.dir/etime_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/etime_.c +[ 50%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/backspac.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/backspac.c.o -MF CMakeFiles/vf2c.dir/backspac.c.o.d -o CMakeFiles/vf2c.dir/backspac.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/backspac.c [ 50%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/close.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/close.c.o -MF CMakeFiles/vf2c.dir/close.c.o.d -o CMakeFiles/vf2c.dir/close.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/close.c [ 51%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dfe.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/close.c.o -MF CMakeFiles/vf2c.dir/close.c.o.d -o CMakeFiles/vf2c.dir/close.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/close.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dfe.c.o -MF CMakeFiles/vf2c.dir/dfe.c.o.d -o CMakeFiles/vf2c.dir/dfe.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/dfe.c [ 51%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dolio.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dolio.c.o -MF CMakeFiles/vf2c.dir/dolio.c.o.d -o CMakeFiles/vf2c.dir/dolio.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/dolio.c +[ 51%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/due.c.o /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/backspac.c: In function 'f_back': /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/backspac.c:47:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 47 | fread((char *)&n,sizeof(uiolen),1,f); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/dolio.c.o -MF CMakeFiles/vf2c.dir/dolio.c.o.d -o CMakeFiles/vf2c.dir/dolio.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/dolio.c -[ 51%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/due.c.o -[ 52%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/endfile.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/due.c.o -MF CMakeFiles/vf2c.dir/due.c.o.d -o CMakeFiles/vf2c.dir/due.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/due.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/endfile.c.o -MF CMakeFiles/vf2c.dir/endfile.c.o.d -o CMakeFiles/vf2c.dir/endfile.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/endfile.c -[ 52%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/err.c.o +[ 51%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/err.c.o +[ 52%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/endfile.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/err.c.o -MF CMakeFiles/vf2c.dir/err.c.o.d -o CMakeFiles/vf2c.dir/err.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/err.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/endfile.c.o -MF CMakeFiles/vf2c.dir/endfile.c.o.d -o CMakeFiles/vf2c.dir/endfile.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/endfile.c +[ 52%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/fmtlib.c.o [ 52%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/fmt.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/fmt.c.o -MF CMakeFiles/vf2c.dir/fmt.c.o.d -o CMakeFiles/vf2c.dir/fmt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/fmt.c -[ 52%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/fmtlib.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/fmtlib.c.o -MF CMakeFiles/vf2c.dir/fmtlib.c.o.d -o CMakeFiles/vf2c.dir/fmtlib.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/fmtlib.c +[ 52%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/iio.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/iio.c.o -MF CMakeFiles/vf2c.dir/iio.c.o.d -o CMakeFiles/vf2c.dir/iio.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/iio.c [ 53%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ftell_.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ftell_.c.o -MF CMakeFiles/vf2c.dir/ftell_.c.o.d -o CMakeFiles/vf2c.dir/ftell_.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/ftell_.c +[ 53%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ilnw.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ilnw.c.o -MF CMakeFiles/vf2c.dir/ilnw.c.o.d -o CMakeFiles/vf2c.dir/ilnw.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/ilnw.c [ 54%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/inquire.c.o -[ 54%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/iio.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/iio.c.o -MF CMakeFiles/vf2c.dir/iio.c.o.d -o CMakeFiles/vf2c.dir/iio.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/iio.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/inquire.c.o -MF CMakeFiles/vf2c.dir/inquire.c.o.d -o CMakeFiles/vf2c.dir/inquire.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/inquire.c -[ 54%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ilnw.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/ilnw.c.o -MF CMakeFiles/vf2c.dir/ilnw.c.o.d -o CMakeFiles/vf2c.dir/ilnw.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/ilnw.c -[ 54%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lread.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lread.c.o -MF CMakeFiles/vf2c.dir/lread.c.o.d -o CMakeFiles/vf2c.dir/lread.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/lread.c [ 54%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lwrite.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lwrite.c.o -MF CMakeFiles/vf2c.dir/lwrite.c.o.d -o CMakeFiles/vf2c.dir/lwrite.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/lwrite.c +[ 54%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lread.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/lread.c.o -MF CMakeFiles/vf2c.dir/lread.c.o.d -o CMakeFiles/vf2c.dir/lread.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/lread.c [ 54%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/open.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/open.c.o -MF CMakeFiles/vf2c.dir/open.c.o.d -o CMakeFiles/vf2c.dir/open.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/open.c [ 55%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rdfmt.c.o -[ 55%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rewind.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rdfmt.c.o -MF CMakeFiles/vf2c.dir/rdfmt.c.o.d -o CMakeFiles/vf2c.dir/rdfmt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/rdfmt.c +[ 55%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rewind.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rewind.c.o -MF CMakeFiles/vf2c.dir/rewind.c.o.d -o CMakeFiles/vf2c.dir/rewind.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/rewind.c [ 55%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rsfe.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rsfe.c.o -MF CMakeFiles/vf2c.dir/rsfe.c.o.d -o CMakeFiles/vf2c.dir/rsfe.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/rsfe.c @@ -2233,20 +2313,20 @@ cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rsli.c.o -MF CMakeFiles/vf2c.dir/rsli.c.o.d -o CMakeFiles/vf2c.dir/rsli.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/rsli.c [ 56%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rsne.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/rsne.c.o -MF CMakeFiles/vf2c.dir/rsne.c.o.d -o CMakeFiles/vf2c.dir/rsne.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/rsne.c -[ 56%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sue.c.o [ 56%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sfe.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sfe.c.o -MF CMakeFiles/vf2c.dir/sfe.c.o.d -o CMakeFiles/vf2c.dir/sfe.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/sfe.c +[ 56%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sue.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/sue.c.o -MF CMakeFiles/vf2c.dir/sue.c.o.d -o CMakeFiles/vf2c.dir/sue.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/sue.c [ 57%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/typesize.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/typesize.c.o -MF CMakeFiles/vf2c.dir/typesize.c.o.d -o CMakeFiles/vf2c.dir/typesize.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/typesize.c [ 57%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/uio.c.o -[ 57%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/util.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/util.c.o -MF CMakeFiles/vf2c.dir/util.c.o.d -o CMakeFiles/vf2c.dir/util.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/util.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/uio.c.o -MF CMakeFiles/vf2c.dir/uio.c.o.d -o CMakeFiles/vf2c.dir/uio.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/uio.c -[ 57%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wrtfmt.c.o [ 58%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wref.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wrtfmt.c.o -MF CMakeFiles/vf2c.dir/wrtfmt.c.o.d -o CMakeFiles/vf2c.dir/wrtfmt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/wrtfmt.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wref.c.o -MF CMakeFiles/vf2c.dir/wref.c.o.d -o CMakeFiles/vf2c.dir/wref.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/wref.c +[ 58%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/util.c.o +[ 58%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wrtfmt.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/util.c.o -MF CMakeFiles/vf2c.dir/util.c.o.d -o CMakeFiles/vf2c.dir/util.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/util.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wrtfmt.c.o -MF CMakeFiles/vf2c.dir/wrtfmt.c.o.d -o CMakeFiles/vf2c.dir/wrtfmt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/wrtfmt.c [ 58%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wsfe.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src/vf2c && /usr/bin/cc -Dvf2c_EXPORTS -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wsfe.c.o -MF CMakeFiles/vf2c.dir/wsfe.c.o.d -o CMakeFiles/vf2c.dir/wsfe.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/wsfe.c [ 58%] Building C object _deps/fetk-build/punc/src/vf2c/CMakeFiles/vf2c.dir/wsle.c.o @@ -2286,31 +2366,33 @@ make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make -f _deps/fetk-build/mc/src/CMakeFiles/mc.dir/build.make _deps/fetk-build/mc/src/CMakeFiles/mc.dir/build make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 60%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bvec.c.o -[ 62%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/mat.c.o -[ 62%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/base/mc_base.c.o -[ 62%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/matcopy.c.o -[ 62%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bsolv.c.o -[ 62%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bmat.c.o -[ 62%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/matln.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bvec.c.o -MF CMakeFiles/mc.dir/bam/bvec.c.o.d -o CMakeFiles/mc.dir/bam/bvec.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bvec.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/mat.c.o -MF CMakeFiles/mc.dir/bam/mat.c.o.d -o CMakeFiles/mc.dir/bam/mat.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/mat.c +[ 61%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/base/mc_base.c.o +[ 61%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bmat.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/base/mc_base.c.o -MF CMakeFiles/mc.dir/base/mc_base.c.o.d -o CMakeFiles/mc.dir/base/mc_base.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base/mc_base.c +[ 61%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bsolv.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bmat.c.o -MF CMakeFiles/mc.dir/bam/bmat.c.o.d -o CMakeFiles/mc.dir/bam/bmat.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bmat.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bsolv.c.o -MF CMakeFiles/mc.dir/bam/bsolv.c.o.d -o CMakeFiles/mc.dir/bam/bsolv.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bsolv.c +[ 61%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bvec.c.o +[ 62%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/mat.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/mat.c.o -MF CMakeFiles/mc.dir/bam/mat.c.o.d -o CMakeFiles/mc.dir/bam/mat.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/mat.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bvec.c.o -MF CMakeFiles/mc.dir/bam/bvec.c.o.d -o CMakeFiles/mc.dir/bam/bvec.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bvec.c +[ 62%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/matcopy.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/matcopy.c.o -MF CMakeFiles/mc.dir/bam/matcopy.c.o.d -o CMakeFiles/mc.dir/bam/matcopy.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/matcopy.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/bmat.c.o -MF CMakeFiles/mc.dir/bam/bmat.c.o.d -o CMakeFiles/mc.dir/bam/bmat.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bmat.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/matln.c.o -MF CMakeFiles/mc.dir/bam/matln.c.o.d -o CMakeFiles/mc.dir/bam/matln.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/matln.c +[ 62%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/matln.c.o [ 63%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/mtool.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/matln.c.o -MF CMakeFiles/mc.dir/bam/matln.c.o.d -o CMakeFiles/mc.dir/bam/matln.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/matln.c +[ 63%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/slu.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/mtool.c.o -MF CMakeFiles/mc.dir/bam/mtool.c.o.d -o CMakeFiles/mc.dir/bam/mtool.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/mtool.c -[ 63%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/vec3.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/slu.c.o -MF CMakeFiles/mc.dir/bam/slu.c.o.d -o CMakeFiles/mc.dir/bam/slu.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/slu.c [ 63%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/vec.c.o -[ 63%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/slu.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/vec.c.o -MF CMakeFiles/mc.dir/bam/vec.c.o.d -o CMakeFiles/mc.dir/bam/vec.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/vec.c -[ 64%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/zslu.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/slu.c.o -MF CMakeFiles/mc.dir/bam/slu.c.o.d -o CMakeFiles/mc.dir/bam/slu.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/slu.c +[ 63%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/vec3.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/vec3.c.o -MF CMakeFiles/mc.dir/bam/vec3.c.o.d -o CMakeFiles/mc.dir/bam/vec3.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/vec3.c +[ 64%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/zslu.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/bam/zslu.c.o -MF CMakeFiles/mc.dir/bam/zslu.c.o.d -o CMakeFiles/mc.dir/bam/zslu.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/zslu.c [ 64%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/whb.c.o +[ 64%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/bvechb.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/bvechb.c.o -MF CMakeFiles/mc.dir/whb/bvechb.c.o.d -o CMakeFiles/mc.dir/whb/bvechb.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/whb.c.o -MF CMakeFiles/mc.dir/whb/whb.c.o.d -o CMakeFiles/mc.dir/whb/whb.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/whb.c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bmat.c: In function 'Bmat_ctor': /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bmat.c:104:36: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 5 and 14 [-Wformat-overflow=] @@ -2369,8 +2451,41 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -[ 64%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/bvechb.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/bvechb.c.o -MF CMakeFiles/mc.dir/whb/bvechb.c.o.d -o CMakeFiles/mc.dir/whb/bvechb.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c +[ 65%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/hbtools.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/hbtools.c.o -MF CMakeFiles/mc.dir/whb/hbtools.c.o.d -o CMakeFiles/mc.dir/whb/hbtools.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/hbtools.c +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c: In function 'Bvec_hcg': +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:267:29: warning: '%s' directive writing up to 79 bytes into a region of size 72 [-Wformat-overflow=] + 267 | sprintf(rn,"Bvec_hcg%s",rmeth); + | ^~ ~~~~~ +In file included from /usr/include/stdio.h:906, + from /usr/include/maloc/maloc_base.h:80, + from /usr/include/maloc/maloc.h:38, + from /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base/mc/mc_base.h:40, + from /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/mc/whb.h:50, + from /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb_p.h:37, + from /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:34: +In function 'sprintf', + inlined from 'Bvec_hcg' at /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:267:9: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 9 and 88 bytes into a destination of size 80 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c: In function 'Bvec_hcg': +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:264:33: warning: '%s' directive writing up to 79 bytes into a region of size 68 [-Wformat-overflow=] + 264 | sprintf(rn,"--->Bvec_hcg%s",rmeth); + | ^~ ~~~~~ +In function 'sprintf', + inlined from 'Bvec_hcg' at /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:264:9: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 13 and 92 bytes into a destination of size 80 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bsolv.c: In function 'Bvec_cg': /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bsolv.c:631:28: warning: '%s' directive writing up to 79 bytes into a region of size 73 [-Wformat-overflow=] 631 | sprintf(rn,"Bvec_cg%s",rmeth); @@ -2397,8 +2512,32 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -[ 65%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/hbtools.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/hbtools.c.o -MF CMakeFiles/mc.dir/whb/hbtools.c.o.d -o CMakeFiles/mc.dir/whb/hbtools.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/hbtools.c +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c: In function 'Bvec_hbcg': +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:474:30: warning: '%s' directive writing up to 79 bytes into a region of size 71 [-Wformat-overflow=] + 474 | sprintf(rn,"Bvec_hbcg%s",rmeth); + | ^~ ~~~~~ +In function 'sprintf', + inlined from 'Bvec_hbcg' at /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:474:9: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 10 and 89 bytes into a destination of size 80 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c: In function 'Bvec_hbcg': +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:471:34: warning: '%s' directive writing up to 79 bytes into a region of size 67 [-Wformat-overflow=] + 471 | sprintf(rn,"--->Bvec_hbcg%s",rmeth); + | ^~ ~~~~~ +In function 'sprintf', + inlined from 'Bvec_hbcg' at /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:471:9: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 14 and 93 bytes into a destination of size 80 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bmat.c: In function 'Bmat_galerkin': /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bmat.c:1018:36: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 5 and 14 [-Wformat-overflow=] 1018 | sprintf(bname, "%s_%d%d", thee->name, p, q); @@ -2416,6 +2555,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +[ 65%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/rcmat.c.o /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bsolv.c: In function 'Bvec_cgnr': /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam/bsolv.c:1422:30: warning: '%s' directive writing up to 79 bytes into a region of size 71 [-Wformat-overflow=] 1422 | sprintf(rn,"Bvec_cgnr%s",rmeth); @@ -2442,73 +2582,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -[ 65%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/rcmat.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/rcmat.c.o -MF CMakeFiles/mc.dir/whb/rcmat.c.o.d -o CMakeFiles/mc.dir/whb/rcmat.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/rcmat.c -[ 65%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/brcmat.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/brcmat.c.o -MF CMakeFiles/mc.dir/whb/brcmat.c.o.d -o CMakeFiles/mc.dir/whb/brcmat.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/brcmat.c -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c: In function 'Bvec_hcg': -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:267:29: warning: '%s' directive writing up to 79 bytes into a region of size 72 [-Wformat-overflow=] - 267 | sprintf(rn,"Bvec_hcg%s",rmeth); - | ^~ ~~~~~ -In file included from /usr/include/stdio.h:906, - from /usr/include/maloc/maloc_base.h:80, - from /usr/include/maloc/maloc.h:38, - from /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base/mc/mc_base.h:40, - from /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/mc/whb.h:50, - from /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb_p.h:37, - from /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:34: -In function 'sprintf', - inlined from 'Bvec_hcg' at /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:267:9: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 9 and 88 bytes into a destination of size 80 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c: In function 'Bvec_hcg': -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:264:33: warning: '%s' directive writing up to 79 bytes into a region of size 68 [-Wformat-overflow=] - 264 | sprintf(rn,"--->Bvec_hcg%s",rmeth); - | ^~ ~~~~~ -In function 'sprintf', - inlined from 'Bvec_hcg' at /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:264:9: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 13 and 92 bytes into a destination of size 80 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -[ 65%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/subopt.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/subopt.c.o -MF CMakeFiles/mc.dir/whb/subopt.c.o.d -o CMakeFiles/mc.dir/whb/subopt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/subopt.c -[ 66%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/aprx.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/aprx.c.o -MF CMakeFiles/mc.dir/aprx/aprx.c.o.d -o CMakeFiles/mc.dir/aprx/aprx.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx/aprx.c -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c: In function 'Bvec_hbcg': -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:474:30: warning: '%s' directive writing up to 79 bytes into a region of size 71 [-Wformat-overflow=] - 474 | sprintf(rn,"Bvec_hbcg%s",rmeth); - | ^~ ~~~~~ -In function 'sprintf', - inlined from 'Bvec_hbcg' at /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:474:9: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 10 and 89 bytes into a destination of size 80 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c: In function 'Bvec_hbcg': -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:471:34: warning: '%s' directive writing up to 79 bytes into a region of size 67 [-Wformat-overflow=] - 471 | sprintf(rn,"--->Bvec_hbcg%s",rmeth); - | ^~ ~~~~~ -In function 'sprintf', - inlined from 'Bvec_hbcg' at /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/bvechb.c:471:9: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 14 and 93 bytes into a destination of size 80 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/hbtools.c: In function 'Bvec_ctorPoint': /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/hbtools.c:291:28: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 5 and 14 [-Wformat-overflow=] 291 | sprintf(bname, "%s_%d", thee->name, p); @@ -2532,6 +2606,12 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +[ 65%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/brcmat.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/brcmat.c.o -MF CMakeFiles/mc.dir/whb/brcmat.c.o.d -o CMakeFiles/mc.dir/whb/brcmat.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/brcmat.c +[ 65%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/subopt.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/whb/subopt.c.o -MF CMakeFiles/mc.dir/whb/subopt.c.o.d -o CMakeFiles/mc.dir/whb/subopt.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/subopt.c +[ 66%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/aprx.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/aprx.c.o -MF CMakeFiles/mc.dir/aprx/aprx.c.o.d -o CMakeFiles/mc.dir/aprx/aprx.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx/aprx.c [ 66%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/assem.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/assem.c.o -MF CMakeFiles/mc.dir/aprx/assem.c.o.d -o CMakeFiles/mc.dir/aprx/assem.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx/assem.c [ 66%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/bnode.c.o @@ -2539,12 +2619,12 @@ [ 67%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/estim.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/estim.c.o -MF CMakeFiles/mc.dir/aprx/estim.c.o.d -o CMakeFiles/mc.dir/aprx/estim.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx/estim.c [ 67%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/eval.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/eval.c.o -MF CMakeFiles/mc.dir/aprx/eval.c.o.d -o CMakeFiles/mc.dir/aprx/eval.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx/eval.c [ 67%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/io.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/eval.c.o -MF CMakeFiles/mc.dir/aprx/eval.c.o.d -o CMakeFiles/mc.dir/aprx/eval.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx/eval.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/io.c.o -MF CMakeFiles/mc.dir/aprx/io.c.o.d -o CMakeFiles/mc.dir/aprx/io.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx/io.c [ 67%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/node.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/node.c.o -MF CMakeFiles/mc.dir/aprx/node.c.o.d -o CMakeFiles/mc.dir/aprx/node.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx/node.c [ 68%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/parti.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/io.c.o -MF CMakeFiles/mc.dir/aprx/io.c.o.d -o CMakeFiles/mc.dir/aprx/io.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx/io.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/parti.c.o -MF CMakeFiles/mc.dir/aprx/parti.c.o.d -o CMakeFiles/mc.dir/aprx/parti.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx/parti.c [ 68%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/re.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/aprx/re.c.o -MF CMakeFiles/mc.dir/aprx/re.c.o.d -o CMakeFiles/mc.dir/aprx/re.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx/re.c @@ -2606,6 +2686,10 @@ | ~~~~~~~~~~~~~~~~~ [ 70%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemg.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemg.c.o -MF CMakeFiles/mc.dir/gem/gemg.c.o.d -o CMakeFiles/mc.dir/gem/gemg.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemg.c +[ 70%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemgen.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemgen.c.o -MF CMakeFiles/mc.dir/gem/gemgen.c.o.d -o CMakeFiles/mc.dir/gem/gemgen.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c +[ 70%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemio.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemio.c.o -MF CMakeFiles/mc.dir/gem/gemio.c.o.d -o CMakeFiles/mc.dir/gem/gemio.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemio.c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/subopt.c: In function 'Bvec_submethod': /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb/subopt.c:495:31: warning: '%s' directive writing up to 79 bytes into a region of size 70 [-Wformat-overflow=] 495 | sprintf(rn,"Bvec_sfpcg%s",rmeth); @@ -2669,14 +2753,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -[ 70%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemgen.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemgen.c.o -MF CMakeFiles/mc.dir/gem/gemgen.c.o.d -o CMakeFiles/mc.dir/gem/gemgen.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c -[ 70%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemio.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemio.c.o -MF CMakeFiles/mc.dir/gem/gemio.c.o.d -o CMakeFiles/mc.dir/gem/gemio.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemio.c -[ 71%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemref.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemref.c.o -MF CMakeFiles/mc.dir/gem/gemref.c.o.d -o CMakeFiles/mc.dir/gem/gemref.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemref.c -[ 71%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemunref.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemunref.c.o -MF CMakeFiles/mc.dir/gem/gemunref.c.o.d -o CMakeFiles/mc.dir/gem/gemunref.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemunref.c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c: In function 'Gem_delaunay': /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:522:5: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] 522 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); @@ -2701,6 +2777,10 @@ /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, | ^~~~~~~~~~~ +[ 71%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemref.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemref.c.o -MF CMakeFiles/mc.dir/gem/gemref.c.o.d -o CMakeFiles/mc.dir/gem/gemref.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemref.c +[ 71%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemunref.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemunref.c.o -MF CMakeFiles/mc.dir/gem/gemunref.c.o.d -o CMakeFiles/mc.dir/gem/gemunref.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemunref.c [ 71%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemcube.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/gem/gemcube.c.o -MF CMakeFiles/mc.dir/gem/gemcube.c.o.d -o CMakeFiles/mc.dir/gem/gemcube.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemcube.c [ 71%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/pde/pde.c.o @@ -2711,12 +2791,54 @@ cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/nam/lsolv.c.o -MF CMakeFiles/mc.dir/nam/lsolv.c.o.d -o CMakeFiles/mc.dir/nam/lsolv.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam/lsolv.c [ 72%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/nam/nsolv.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/nam/nsolv.c.o -MF CMakeFiles/mc.dir/nam/nsolv.c.o.d -o CMakeFiles/mc.dir/nam/nsolv.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam/nsolv.c +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:522:5: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] + 522 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:522:5: note: referencing argument 8 of type 'double *[4]' +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' + 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, + | ^~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:659:13: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] + 659 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:659:13: note: referencing argument 8 of type 'double *[4]' +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' + 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, + | ^~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:743:5: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] + 743 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:743:5: note: referencing argument 8 of type 'double *[4]' +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' + 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, + | ^~~~~~~~~~~ [ 73%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/dyn/dyn.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/dyn/dyn.c.o -MF CMakeFiles/mc.dir/dyn/dyn.c.o.d -o CMakeFiles/mc.dir/dyn/dyn.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn/dyn.c [ 73%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/dyn/svio.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/dyn/svio.c.o -MF CMakeFiles/mc.dir/dyn/svio.c.o.d -o CMakeFiles/mc.dir/dyn/svio.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn/svio.c [ 73%] Building C object _deps/fetk-build/mc/src/CMakeFiles/mc.dir/mcsh/mcsh.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src && /usr/bin/cc -Dmc_EXPORTS -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -O2 -g -DNDEBUG -fPIC -fPIC -MD -MT _deps/fetk-build/mc/src/CMakeFiles/mc.dir/mcsh/mcsh.c.o -MF CMakeFiles/mc.dir/mcsh/mcsh.c.o.d -o CMakeFiles/mc.dir/mcsh/mcsh.c.o -c /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh/mcsh.c +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:522:5: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] + 522 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:522:5: note: referencing argument 8 of type 'double *[4]' +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' + 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, + | ^~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:659:13: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] + 659 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:659:13: note: referencing argument 8 of type 'double *[4]' +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' + 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, + | ^~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:743:5: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] + 743 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:743:5: note: referencing argument 8 of type 'double *[4]' +/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' + 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, + | ^~~~~~~~~~~ /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh/mcsh.c: In function 'MCsh_builtIn': /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh/mcsh.c:765:9: warning: 'Gem_writeGEOM' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] 765 | Gem_writeGEOM(thee->gm, @@ -2770,27 +2892,6 @@ /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3036:15: note: in a call to function 'Gem_writeGEOM' 3036 | VEXTERNC void Gem_writeGEOM(Gem *thee, Vio *sock, | ^~~~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:522:5: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] - 522 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:522:5: note: referencing argument 8 of type 'double *[4]' -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' - 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, - | ^~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:659:13: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] - 659 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:659:13: note: referencing argument 8 of type 'double *[4]' -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' - 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, - | ^~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:743:5: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] - 743 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:743:5: note: referencing argument 8 of type 'double *[4]' -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' - 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, - | ^~~~~~~~~~~ /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh/mcsh.c:765:9: warning: 'Gem_writeGEOM' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] 765 | Gem_writeGEOM(thee->gm, | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -2883,27 +2984,6 @@ /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3036:15: note: in a call to function 'Gem_writeGEOM' 3036 | VEXTERNC void Gem_writeGEOM(Gem *thee, Vio *sock, | ^~~~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:522:5: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] - 522 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:522:5: note: referencing argument 8 of type 'double *[4]' -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' - 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, - | ^~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:659:13: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] - 659 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:659:13: note: referencing argument 8 of type 'double *[4]' -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' - 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, - | ^~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:743:5: warning: 'Gem_writeGV' accessing 32 bytes in a region of size 24 [-Wstringop-overflow=] - 743 | Gem_writeGV(thee,sock,0,0,0,1.0,0,defX); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemgen.c:743:5: note: referencing argument 8 of type 'double *[4]' -/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/mc/gem.h:3117:15: note: in a call to function 'Gem_writeGV' - 3117 | VEXTERNC void Gem_writeGV(Gem *thee, Vio *sock, - | ^~~~~~~~~~~ /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemdisp.c: In function 'Gem_writeTEC': /build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem/gemdisp.c:1656:33: warning: '__builtin___sprintf_chk' writing a terminating nul past the end of the destination [-Wformat-overflow=] 1656 | sprintf(str1,"TETRAHEDRA"); @@ -2951,72 +3031,70 @@ cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/src/pmgc /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[ 74%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o -MF CMakeFiles/apbs_generic.dir/nosh.c.o.d -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /build/apbs-3.4.1/src/generic/nosh.c make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 73%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o -[ 73%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o -[ 73%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o -[ 73%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o -[ 74%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o -[ 74%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o -[ 75%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o -[ 76%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o -[ 76%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o -[ 76%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildBd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /build/apbs-3.4.1/src/pmgc/buildBd.c +[ 74%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o -MF CMakeFiles/apbs_generic.dir/mgparm.c.o.d -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /build/apbs-3.4.1/src/generic/mgparm.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o -MF CMakeFiles/apbs_generic.dir/femparm.c.o.d -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /build/apbs-3.4.1/src/generic/femparm.c +[ 74%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o +[ 74%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o -MF CMakeFiles/apbs_generic.dir/pbamparm.c.o.d -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /build/apbs-3.4.1/src/generic/pbamparm.c -[ 77%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o +[ 74%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildBd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /build/apbs-3.4.1/src/pmgc/buildBd.c +[ 75%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o -MF CMakeFiles/apbs_generic.dir/femparm.c.o.d -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /build/apbs-3.4.1/src/generic/femparm.c +[ 75%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o +[ 76%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o +[ 76%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o -MF CMakeFiles/apbs_generic.dir/pbsamparm.c.o.d -o CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /build/apbs-3.4.1/src/generic/pbsamparm.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o -MF CMakeFiles/apbs_generic.dir/bemparm.c.o.d -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /build/apbs-3.4.1/src/generic/bemparm.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o -MF CMakeFiles/apbs_generic.dir/pbeparm.c.o.d -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /build/apbs-3.4.1/src/generic/pbeparm.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o -MF CMakeFiles/apbs_generic.dir/geoflowparm.c.o.d -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /build/apbs-3.4.1/src/generic/geoflowparm.c +[ 76%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildAd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /build/apbs-3.4.1/src/pmgc/buildAd.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o -MF CMakeFiles/apbs_generic.dir/nosh.c.o.d -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /build/apbs-3.4.1/src/generic/nosh.c -[ 77%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o -[ 78%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o -MF CMakeFiles/apbs_generic.dir/apolparm.c.o.d -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /build/apbs-3.4.1/src/generic/apolparm.c +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o -MF CMakeFiles/apbs_generic.dir/pbeparm.c.o.d -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /build/apbs-3.4.1/src/generic/pbeparm.c +[ 76%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o +[ 77%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildGd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /build/apbs-3.4.1/src/pmgc/buildGd.c +[ 77%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildPd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /build/apbs-3.4.1/src/pmgc/buildPd.c -[ 78%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o -MF CMakeFiles/apbs_pmgc.dir/cgd.c.o.d -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /build/apbs-3.4.1/src/pmgc/cgd.c -[ 78%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o -MF CMakeFiles/apbs_generic.dir/vacc.c.o.d -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /build/apbs-3.4.1/src/generic/vacc.c -[ 78%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam 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src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh 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-I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o -MF CMakeFiles/apbs_pmgc.dir/matvecd.c.o.d -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /build/apbs-3.4.1/src/pmgc/matvecd.c -[ 80%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o +[ 77%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o -MF CMakeFiles/apbs_generic.dir/bemparm.c.o.d -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /build/apbs-3.4.1/src/generic/bemparm.c +[ 78%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -MF CMakeFiles/apbs_pmgc.dir/mgcsd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /build/apbs-3.4.1/src/pmgc/mgcsd.c -[ 80%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o -[ 80%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam 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-I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -MF CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /build/apbs-3.4.1/src/pmgc/mgdrvd.c -[ 80%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o -MF CMakeFiles/apbs_generic.dir/vcap.c.o.d -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /build/apbs-3.4.1/src/generic/vcap.c -[ 81%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o -MF CMakeFiles/apbs_generic.dir/vclist.c.o.d -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /build/apbs-3.4.1/src/generic/vclist.c -[ 81%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o -MF CMakeFiles/apbs_generic.dir/vstring.c.o.d -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /build/apbs-3.4.1/src/generic/vstring.c -[ 81%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 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-c /build/apbs-3.4.1/src/generic/vgreen.c -[ 81%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o +[ 79%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o -MF CMakeFiles/apbs_generic.dir/geoflowparm.c.o.d -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /build/apbs-3.4.1/src/generic/geoflowparm.c +[ 79%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -MF CMakeFiles/apbs_pmgc.dir/mgsubd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /build/apbs-3.4.1/src/pmgc/mgsubd.c -[ 81%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o +[ 79%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o -MF CMakeFiles/apbs_generic.dir/apolparm.c.o.d -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /build/apbs-3.4.1/src/generic/apolparm.c +[ 79%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o +[ 79%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o -MF CMakeFiles/apbs_generic.dir/vacc.c.o.d -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /build/apbs-3.4.1/src/generic/vacc.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -MF CMakeFiles/apbs_pmgc.dir/mikpckd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /build/apbs-3.4.1/src/pmgc/mikpckd.c -[ 82%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o +[ 79%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/valist.c.o -MF CMakeFiles/apbs_generic.dir/valist.c.o.d -o CMakeFiles/apbs_generic.dir/valist.c.o -c /build/apbs-3.4.1/src/generic/valist.c +[ 80%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o -MF CMakeFiles/apbs_generic.dir/vatom.c.o.d -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /build/apbs-3.4.1/src/generic/vatom.c +[ 80%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o -MF CMakeFiles/apbs_generic.dir/vpbe.c.o.d -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /build/apbs-3.4.1/src/generic/vpbe.c +[ 81%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -MF CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /build/apbs-3.4.1/src/pmgc/mlinpckd.c +[ 81%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o -MF CMakeFiles/apbs_generic.dir/vcap.c.o.d -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /build/apbs-3.4.1/src/generic/vcap.c +[ 82%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o -MF CMakeFiles/apbs_generic.dir/vclist.c.o.d -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /build/apbs-3.4.1/src/generic/vclist.c [ 82%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o -MF CMakeFiles/apbs_pmgc.dir/mypdec.c.o.d -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /build/apbs-3.4.1/src/pmgc/mypdec.c +[ 82%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o -MF CMakeFiles/apbs_generic.dir/vstring.c.o.d -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /build/apbs-3.4.1/src/generic/vstring.c +[ 82%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o -MF CMakeFiles/apbs_generic.dir/vparam.c.o.d -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /build/apbs-3.4.1/src/generic/vparam.c [ 82%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o -MF CMakeFiles/apbs_pmgc.dir/newtond.c.o.d -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /build/apbs-3.4.1/src/pmgc/newtond.c [ 83%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o @@ -3025,6 +3103,8 @@ cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o -MF CMakeFiles/apbs_pmgc.dir/powerd.c.o.d -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /build/apbs-3.4.1/src/pmgc/powerd.c [ 83%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o -MF CMakeFiles/apbs_pmgc.dir/smoothd.c.o.d -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /build/apbs-3.4.1/src/pmgc/smoothd.c +[ 83%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o -MF CMakeFiles/apbs_generic.dir/vgreen.c.o.d -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /build/apbs-3.4.1/src/generic/vgreen.c [ 83%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -MF CMakeFiles/apbs_pmgc.dir/mgfasd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /build/apbs-3.4.1/src/pmgc/mgfasd.c [ 84%] Linking C shared library libapbs_generic.so @@ -3040,11 +3120,11 @@ make -f src/fem/CMakeFiles/apbs_fem.dir/build.make src/fem/CMakeFiles/apbs_fem.dir/build make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' [ 85%] Building C object src/fem/CMakeFiles/apbs_fem.dir/vfetk.c.o -[ 85%] Building C object src/fem/CMakeFiles/apbs_fem.dir/vpee.c.o -[ 85%] Building C object src/fem/CMakeFiles/apbs_fem.dir/vcsm.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/fem && /usr/bin/cc -Dapbs_fem_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/fem/CMakeFiles/apbs_fem.dir/vfetk.c.o -MF CMakeFiles/apbs_fem.dir/vfetk.c.o.d -o CMakeFiles/apbs_fem.dir/vfetk.c.o -c /build/apbs-3.4.1/src/fem/vfetk.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/fem && /usr/bin/cc -Dapbs_fem_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/fem/CMakeFiles/apbs_fem.dir/vpee.c.o -MF CMakeFiles/apbs_fem.dir/vpee.c.o.d -o CMakeFiles/apbs_fem.dir/vpee.c.o -c /build/apbs-3.4.1/src/fem/vpee.c +[ 85%] Building C object src/fem/CMakeFiles/apbs_fem.dir/vcsm.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/fem && /usr/bin/cc -Dapbs_fem_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/fem/CMakeFiles/apbs_fem.dir/vcsm.c.o -MF CMakeFiles/apbs_fem.dir/vcsm.c.o.d -o CMakeFiles/apbs_fem.dir/vcsm.c.o -c /build/apbs-3.4.1/src/fem/vcsm.c +[ 85%] Building C object src/fem/CMakeFiles/apbs_fem.dir/vpee.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/fem && /usr/bin/cc -Dapbs_fem_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/fem/CMakeFiles/apbs_fem.dir/vpee.c.o -MF CMakeFiles/apbs_fem.dir/vpee.c.o.d -o CMakeFiles/apbs_fem.dir/vpee.c.o -c /build/apbs-3.4.1/src/fem/vpee.c /build/apbs-3.4.1/src/fem/vfetk.c: In function 'Vfetk_PDE_ctor2': /build/apbs-3.4.1/src/fem/vfetk.c:1211:24: warning: assignment to 'void (*)(struct sPDE *, int, int, double *, double *, double (*)[3])' from incompatible pointer type 'void (*)(PDE *, int, int, double *, double *)' {aka 'void (*)(struct sPDE *, int, int, double *, double *)'} [-Wincompatible-pointer-types] 1211 | thee->u_T = Vfetk_PDE_u_T; @@ -3130,16 +3210,16 @@ make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 86%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o -[ 86%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o [ 86%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o -[ 87%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o -[ 87%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o -MF CMakeFiles/apbs_mg.dir/vpmgp.c.o.d -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /build/apbs-3.4.1/src/mg/vpmgp.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o -MF CMakeFiles/apbs_mg.dir/vgrid.c.o.d -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /build/apbs-3.4.1/src/mg/vgrid.c +[ 86%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o +[ 87%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o +[ 87%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o -MF CMakeFiles/apbs_mg.dir/vmgrid.c.o.d -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /build/apbs-3.4.1/src/mg/vmgrid.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o -MF CMakeFiles/apbs_mg.dir/vopot.c.o.d -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /build/apbs-3.4.1/src/mg/vopot.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o -MF CMakeFiles/apbs_mg.dir/vpmg.c.o.d -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /build/apbs-3.4.1/src/mg/vpmg.c +[ 87%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o -MF CMakeFiles/apbs_mg.dir/vpmgp.c.o.d -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /build/apbs-3.4.1/src/mg/vpmgp.c /build/apbs-3.4.1/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /build/apbs-3.4.1/src/mg/vgrid.c:853:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 853 | fgets(tok, VMAX_BUFSIZE, fd); @@ -3387,103 +3467,111 @@ make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[ 89%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o -MF CMakeFiles/mgmesh.dir/mgmesh.c.o.d -o CMakeFiles/mgmesh.dir/mgmesh.c.o -c /build/apbs-3.4.1/tools/mesh/mgmesh.c +make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[ 89%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build -make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/smooth.dir/smooth.c.o -MF CMakeFiles/smooth.dir/smooth.c.o.d -o CMakeFiles/smooth.dir/smooth.c.o -c /build/apbs-3.4.1/tools/mesh/smooth.c +[ 89%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o -MF CMakeFiles/dxmath.dir/dxmath.c.o.d -o CMakeFiles/dxmath.dir/dxmath.c.o -c /build/apbs-3.4.1/tools/mesh/dxmath.c make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= -make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend +make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend +[ 89%] Building C object src/CMakeFiles/apbs.dir/main.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIE -fopenmp -MD -MT src/CMakeFiles/apbs.dir/main.c.o -MF CMakeFiles/apbs.dir/main.c.o.d -o CMakeFiles/apbs.dir/main.c.o -c /build/apbs-3.4.1/src/main.c make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend +[ 90%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o -MF CMakeFiles/mergedx.dir/mergedx.c.o.d -o CMakeFiles/mergedx.dir/mergedx.c.o -c /build/apbs-3.4.1/tools/mesh/mergedx.c +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= -make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build -make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend +make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build +make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend +[ 90%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o -MF CMakeFiles/mergedx2.dir/mergedx2.c.o.d -o CMakeFiles/mergedx2.dir/mergedx2.c.o -c /build/apbs-3.4.1/tools/mesh/mergedx2.c +make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 88%] Building C object src/CMakeFiles/apbs.dir/main.c.o -make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIE -fopenmp -MD -MT src/CMakeFiles/apbs.dir/main.c.o -MF CMakeFiles/apbs.dir/main.c.o.d -o CMakeFiles/apbs.dir/main.c.o -c /build/apbs-3.4.1/src/main.c -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build -make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build -make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build -make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[ 91%] Building C object tools/mesh/CMakeFiles/value.dir/value.c.o make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/value.dir/value.c.o -MF CMakeFiles/value.dir/value.c.o.d -o CMakeFiles/value.dir/value.c.o -c /build/apbs-3.4.1/tools/mesh/value.c make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 89%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o -make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o -MF CMakeFiles/mgmesh.dir/mgmesh.c.o.d -o CMakeFiles/mgmesh.dir/mgmesh.c.o -c /build/apbs-3.4.1/tools/mesh/mgmesh.c make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 89%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o +make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build -[ 89%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o +[ 91%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o -MF CMakeFiles/multivalue.dir/multivalue.c.o.d -o CMakeFiles/multivalue.dir/multivalue.c.o -c /build/apbs-3.4.1/tools/mesh/multivalue.c make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 90%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon 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-I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o -MF CMakeFiles/dxmath.dir/dxmath.c.o.d -o CMakeFiles/dxmath.dir/dxmath.c.o -c 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-I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o -MF CMakeFiles/mergedx.dir/mergedx.c.o.d -o CMakeFiles/mergedx.dir/mergedx.c.o -c /build/apbs-3.4.1/tools/mesh/mergedx.c -[ 91%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam 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/build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o -MF CMakeFiles/mergedx2.dir/mergedx2.c.o.d -o CMakeFiles/mergedx2.dir/mergedx2.c.o -c /build/apbs-3.4.1/tools/mesh/mergedx2.c -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 91%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o [ 91%] Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o -make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build -[ 91%] 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-I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o -MF CMakeFiles/benchmark.dir/benchmark.c.o.d -o CMakeFiles/benchmark.dir/benchmark.c.o -c /build/apbs-3.4.1/tools/mesh/benchmark.c -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o -MF CMakeFiles/multivalue.dir/multivalue.c.o.d -o CMakeFiles/multivalue.dir/multivalue.c.o -c /build/apbs-3.4.1/tools/mesh/multivalue.c [ 91%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon 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-I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o -MF CMakeFiles/benchmark.dir/benchmark.c.o.d -o CMakeFiles/benchmark.dir/benchmark.c.o -c /build/apbs-3.4.1/tools/mesh/benchmark.c cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/similarity.dir/similarity.c.o -MF CMakeFiles/similarity.dir/similarity.c.o.d -o CMakeFiles/similarity.dir/similarity.c.o -c /build/apbs-3.4.1/tools/mesh/similarity.c make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[ 91%] Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/analysis.dir/analysis.c.o -MF CMakeFiles/analysis.dir/analysis.c.o.d -o CMakeFiles/analysis.dir/analysis.c.o -c /build/apbs-3.4.1/tools/mesh/analysis.c +make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' [ 91%] Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh 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tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' [ 91%] Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -MF CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o.d -o CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -c /build/apbs-3.4.1/tools/mesh/dx2uhbd.c [ 91%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o -MF CMakeFiles/del2dx.dir/del2dx.c.o.d -o CMakeFiles/del2dx.dir/del2dx.c.o -c /build/apbs-3.4.1/tools/mesh/del2dx.c +[ 92%] Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o -MF CMakeFiles/tensor2dx.dir/tensor2dx.c.o.d -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /build/apbs-3.4.1/tools/mesh/tensor2dx.c /build/apbs-3.4.1/src/main.c: In function 'main': /build/apbs-3.4.1/src/main.c:319:64: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 319 | Vnm_tprint( 1, "This executable compiled on %s at %s\n\n", __DATE__, __TIME__); @@ -3491,6 +3579,47 @@ /build/apbs-3.4.1/src/main.c:319:74: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 319 | Vnm_tprint( 1, "This executable compiled on %s at %s\n\n", __DATE__, __TIME__); | ^~~~~~~~ +[ 92%] Linking C executable ../bin/mgmesh +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mgmesh.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mgmesh.dir/mgmesh.c.o -o ../bin/mgmesh ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp +[ 92%] Linking C executable ../bin/value +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/value.dir/link.txt --verbose=1 +/build/apbs-3.4.1/tools/mesh/tensor2dx.c: In function 'main': +/build/apbs-3.4.1/tools/mesh/tensor2dx.c:97:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/tools/mesh/tensor2dx.c:98:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 98 | fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/tools/mesh/tensor2dx.c:137:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 137 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/tools/mesh/tensor2dx.c:138:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 138 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/tools/mesh/tensor2dx.c:139:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 139 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/tools/mesh/tensor2dx.c:140:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 140 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/tools/mesh/tensor2dx.c:155:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 155 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/tools/mesh/tensor2dx.c:156:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 156 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/tools/mesh/tensor2dx.c:157:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 157 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.4.1/tools/mesh/tensor2dx.c:158:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 158 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/value.dir/value.c.o -o ../bin/value ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp +[ 93%] Linking C executable ../bin/benchmark +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=1 +[ 94%] Linking C executable ../bin/multivalue +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/multivalue.dir/link.txt --verbose=1 /build/apbs-3.4.1/tools/mesh/del2dx.c: In function 'main': /build/apbs-3.4.1/tools/mesh/del2dx.c:76:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 76 | fread(&igrid, 1, sizeof(int), pfile); @@ -3507,111 +3636,70 @@ /build/apbs-3.4.1/tools/mesh/del2dx.c:106:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(oldmid, 3, sizeof(float), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 91%] Linking C executable ../bin/mgmesh -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mgmesh.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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/usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp -[ 95%] Linking C executable ../bin/dx2mol -[ 96%] Linking C executable ../bin/analysis +[ 94%] Linking C executable ../bin/dx2mol cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2mol.dir/link.txt --verbose=1 -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed 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-/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dx2mol.dir/dx2mol.c.o -o ../bin/dx2mol ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp -[ 96%] Linking C executable ../bin/smooth -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/smooth.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/smooth.dir/smooth.c.o -o ../bin/smooth ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 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'/build/apbs-3.4.1/obj-x86_64-linux-gnu' -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/apbs.dir/main.c.o -o apbs -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so /usr/lib/x86_64-linux-gnu/libblas.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp libapbs_routines.so.3 mg/libapbs_mg.so.3 pmgc/libapbs_pmgc.so.3 fem/libapbs_fem.so.3 generic/libapbs_generic.so.3 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/del2dx.dir/del2dx.c.o -o ../bin/del2dx ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp +[ 96%] Linking C executable ../bin/dx2uhbd +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2uhbd.dir/link.txt --verbose=1 +[ 96%] Built target mgmesh make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../bin/dx2uhbd ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= +[ 97%] Linking C executable ../bin/analysis +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build -[ 96%] Built target benchmark make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/analysis.dir/analysis.c.o -o ../bin/analysis ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp +[ 97%] Linking C executable apbs +[ 97%] Built target value +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 +[ 97%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -MF CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o.d -o CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -c /build/apbs-3.4.1/tools/mesh/uhbd_asc2bin.c make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/manip /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/manip /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 97%] Linking C executable ../bin/similarity -cd 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-I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o -MF CMakeFiles/tensor2dx.dir/tensor2dx.c.o.d -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /build/apbs-3.4.1/tools/mesh/tensor2dx.c -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 98%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/similarity.dir/similarity.c.o -o ../bin/similarity ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so 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-I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -MF CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o.d -o CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -c /build/apbs-3.4.1/tools/mesh/uhbd_asc2bin.c -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build -[ 98%] Built target value +[ 97%] Built target benchmark make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 98%] Built target del2dx -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/manip /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/manip /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= -make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/depend -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/python /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake --color= -[ 98%] Linking C executable ../bin/mergedx2 -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx2.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx2.dir/mergedx2.c.o -o ../bin/mergedx2 ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp -[ 99%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/manip && /usr/bin/cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o -MF CMakeFiles/coulomb.dir/coulomb.c.o.d -o CMakeFiles/coulomb.dir/coulomb.c.o -c /build/apbs-3.4.1/tools/manip/coulomb.c +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/apbs.dir/main.c.o -o apbs -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so /usr/lib/x86_64-linux-gnu/libblas.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp libapbs_routines.so.3 mg/libapbs_mg.so.3 pmgc/libapbs_pmgc.so.3 fem/libapbs_fem.so.3 generic/libapbs_generic.so.3 ../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build +make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 99%] Built target mgmesh -make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/build -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make -f tools/python-pybind/CMakeFiles/apbs_pybind.dir/build.make tools/python-pybind/CMakeFiles/apbs_pybind.dir/depend -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.4.1 /build/apbs-3.4.1/tools/python-pybind /build/apbs-3.4.1/obj-x86_64-linux-gnu /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python-pybind /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python-pybind/CMakeFiles/apbs_pybind.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 99%] Building C object tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python && /usr/bin/cc -D_apbslib_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/python3.11 -I/build/apbs-3.4.1/tools/python -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -MF CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o.d -o CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -c /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c -[ 99%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o -make[3]: Leaving 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-I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o -MF CMakeFiles/coulomb.dir/coulomb.c.o.d -o CMakeFiles/coulomb.dir/coulomb.c.o -c /build/apbs-3.4.1/tools/manip/coulomb.c +[ 98%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o +[ 98%] Linking C executable ../bin/mergedx2 cd 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-I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fopenmp -MD -MT tools/manip/CMakeFiles/born.dir/born.c.o -MF CMakeFiles/born.dir/born.c.o.d -o CMakeFiles/born.dir/born.c.o -c /build/apbs-3.4.1/tools/manip/born.c -[ 99%] Built target analysis -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx.dir/link.txt --verbose=1 +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx2.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 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make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[ 99%] Built target dxmath -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx.dir/mergedx.c.o -o ../bin/mergedx ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp /build/apbs-3.4.1/tools/mesh/uhbd_asc2bin.c: In function 'main': /build/apbs-3.4.1/tools/mesh/uhbd_asc2bin.c:30:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 30 | scanf("%s", flnm); @@ -3700,75 +3788,67 @@ /build/apbs-3.4.1/tools/mesh/uhbd_asc2bin.c:138:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 138 | fscanf(inFile, "%lf", RAT3(grid, i, j, k)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 99%] Building CXX 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'/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[ 99%] Built target dx2uhbd +[ 99%] Building C object tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python && /usr/bin/cc -D_apbslib_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/python3.11 -I/build/apbs-3.4.1/tools/python -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -MF CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o.d -o CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -c /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' [ 99%] Built target smooth +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx.dir/mergedx.c.o -o ../bin/mergedx ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp +[ 99%] Built target dx2mol +[ 99%] Building CXX object tools/python-pybind/CMakeFiles/apbs_pybind.dir/bind_nosh.cpp.o [ 99%] Building CXX object tools/python-pybind/CMakeFiles/apbs_pybind.dir/module.cpp.o -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python-pybind && /usr/bin/c++ -Dapbs_pybind_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wpedantic -fpermissive -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -std=gnu++17 -MD -MT tools/python-pybind/CMakeFiles/apbs_pybind.dir/module.cpp.o -MF CMakeFiles/apbs_pybind.dir/module.cpp.o.d -o CMakeFiles/apbs_pybind.dir/module.cpp.o -c /build/apbs-3.4.1/tools/python-pybind/module.cpp -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' [100%] Building CXX object tools/python-pybind/CMakeFiles/apbs_pybind.dir/bind_vatom.cpp.o +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python-pybind && /usr/bin/c++ -Dapbs_pybind_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wpedantic -fpermissive -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -std=gnu++17 -MD -MT tools/python-pybind/CMakeFiles/apbs_pybind.dir/module.cpp.o -MF CMakeFiles/apbs_pybind.dir/module.cpp.o.d -o CMakeFiles/apbs_pybind.dir/module.cpp.o -c /build/apbs-3.4.1/tools/python-pybind/module.cpp +cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python-pybind && /usr/bin/c++ -Dapbs_pybind_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wpedantic -fpermissive -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -std=gnu++17 -MD -MT tools/python-pybind/CMakeFiles/apbs_pybind.dir/bind_nosh.cpp.o -MF CMakeFiles/apbs_pybind.dir/bind_nosh.cpp.o.d -o CMakeFiles/apbs_pybind.dir/bind_nosh.cpp.o -c /build/apbs-3.4.1/tools/python-pybind/bind_nosh.cpp +[100%] Built target del2dx cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python-pybind && /usr/bin/c++ -Dapbs_pybind_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wpedantic -fpermissive -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -std=gnu++17 -MD -MT tools/python-pybind/CMakeFiles/apbs_pybind.dir/bind_vatom.cpp.o -MF CMakeFiles/apbs_pybind.dir/bind_vatom.cpp.o.d -o CMakeFiles/apbs_pybind.dir/bind_vatom.cpp.o -c /build/apbs-3.4.1/tools/python-pybind/bind_vatom.cpp -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -/build/apbs-3.4.1/tools/mesh/tensor2dx.c: In function 'main': -/build/apbs-3.4.1/tools/mesh/tensor2dx.c:97:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/tools/mesh/tensor2dx.c:98:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 98 | fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/tools/mesh/tensor2dx.c:137:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 137 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/tools/mesh/tensor2dx.c:138:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 138 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/tools/mesh/tensor2dx.c:139:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 139 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/tools/mesh/tensor2dx.c:140:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 140 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/tools/mesh/tensor2dx.c:155:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 155 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/tools/mesh/tensor2dx.c:156:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 156 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/tools/mesh/tensor2dx.c:157:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 157 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.4.1/tools/mesh/tensor2dx.c:158:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 158 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object tools/python-pybind/CMakeFiles/apbs_pybind.dir/bind_valist.cpp.o -[100%] Built target dx2mol -[100%] Built target apbs cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/python-pybind && /usr/bin/c++ -Dapbs_pybind_EXPORTS -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/apbs-3.4.1/src -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/src -I/build/apbs-3.4.1/include -I/usr/include/suitesparse -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/mc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/base -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/bam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/whb -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/aprx -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/gem -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/pde -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/nam -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/dyn -I/build/apbs-3.4.1/debian/external_deps/fetk/mc/src/mcsh -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/vf2c/punc -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/cgcode -I/usr/include/superlu -I/build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src -I/build/apbs-3.4.1/debian/external_deps/fetk/punc/src/base -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wpedantic -fpermissive -fPIC -O2 -g -DNDEBUG -fPIC -fopenmp -std=gnu++17 -MD -MT tools/python-pybind/CMakeFiles/apbs_pybind.dir/bind_valist.cpp.o -MF CMakeFiles/apbs_pybind.dir/bind_valist.cpp.o.d -o CMakeFiles/apbs_pybind.dir/bind_valist.cpp.o -c /build/apbs-3.4.1/tools/python-pybind/bind_valist.cpp +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' [100%] Linking C executable ../bin/uhbd_asc2bin cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/uhbd_asc2bin.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[100%] Built target analysis /usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -o ../bin/uhbd_asc2bin ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp -[100%] Built target similarity -[100%] Linking C executable ../bin/tensor2dx -cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/tensor2dx.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/tensor2dx.dir/tensor2dx.c.o -o ../bin/tensor2dx ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[100%] Built target apbs [100%] Linking C executable ../bin/coulomb cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/coulomb.dir/link.txt --verbose=1 -[100%] Built target mergedx2 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/coulomb.dir/coulomb.c.o -o ../bin/coulomb ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[100%] Built target mergedx2 +[100%] Built target similarity +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[100%] Built target uhbd_asc2bin [100%] Linking C executable ../bin/born cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/born.dir/link.txt --verbose=1 -[100%] Built target mergedx /usr/bin/cc -g -O2 -ffile-prefix-map=/build/apbs-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/tirpc -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/born.dir/born.c.o -o ../bin/born ../../src/libapbs_routines.so.3 ../../src/mg/libapbs_mg.so.3 ../../src/pmgc/libapbs_pmgc.so.3 ../../src/fem/libapbs_fem.so.3 ../../src/generic/libapbs_generic.so.3 ../../_deps/fetk-build/mc/src/libmc.so.1.9.3 ../../_deps/fetk-build/punc/src/libpunc.so.1.9.3 -lmaloc /usr/lib/x86_64-linux-gnu/libarpack.so /usr/lib/x86_64-linux-gnu/libsuperlu.so ../../_deps/fetk-build/punc/src/vf2c/libvf2c.so.1.9.3 ../../_deps/fetk-build/punc/src/cgcode/libcgcode.so.1.9.3 -lutil -ldl -lm -lstdc++ /usr/lib/x86_64-linux-gnu/libumfpack.so /usr/lib/x86_64-linux-gnu/libspqr.so /usr/lib/x86_64-linux-gnu/libcholmod.so /usr/lib/x86_64-linux-gnu/libccolamd.so /usr/lib/x86_64-linux-gnu/libcamd.so /usr/lib/x86_64-linux-gnu/libcolamd.so /usr/lib/x86_64-linux-gnu/libamd.so -lm -ldl /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -fopenmp make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[100%] Built target uhbd_asc2bin -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' -[100%] Built target tensor2dx -make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' [100%] Built target coulomb make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' +[100%] Built target mergedx +make[3]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' [100%] Built target born [100%] Linking CXX shared library libgamer.so cd /build/apbs-3.4.1/obj-x86_64-linux-gnu/_deps/fetk-build/gamer/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamer.dir/link.txt --verbose=1 @@ -3796,45 +3876,45 @@ making output directory... done WARNING: html_static_path entry '_static' does not exist [autosummary] generating autosummary for: api/index.rst, background.rst, formats/apbs-xml-parm.rst, formats/flat-parm.rst, formats/harwell.rst, formats/index.rst, formats/mcsf.rst, formats/opendx.rst, formats/pdb.rst, formats/pqr.rst, ..., using/input/old/generic/sdens.rst, using/input/old/generic/srad.rst, using/input/old/generic/swin.rst, using/input/old/generic/temp.rst, using/input/old/index.rst, using/input/old/print.rst, using/input/old/read.rst, using/tests.rst, using/tools.rst, using/units.rst -Failed to import apbs.input_file.calculate.finite_element. +Failed to import apbs.input_file. Possible hints: -* AttributeError: module 'apbs' has no attribute 'input_file' * ModuleNotFoundError: No module named 'pyparsing' -Failed to import apbs.input_file.read. -Possible hints: * AttributeError: module 'apbs' has no attribute 'input_file' +Failed to import apbs.input_file.calculate.finite_element. +Possible hints: * ModuleNotFoundError: No module named 'pyparsing' +* AttributeError: module 'apbs' has no attribute 'input_file' Failed to import apbs.input_file.calculate.nonpolar.Nonpolar. Possible hints: -* AttributeError: module 'apbs' has no attribute 'input_file' * ModuleNotFoundError: No module named 'pyparsing' -Failed to import apbs.input_file.calculate.boundary_element. -Possible hints: * AttributeError: module 'apbs' has no attribute 'input_file' -* ModuleNotFoundError: No module named 'pyparsing' -Failed to import apbs.input_file. +Failed to import apbs.input_file.calculate.boundary_element. Possible hints: -* AttributeError: module 'apbs' has no attribute 'input_file' * ModuleNotFoundError: No module named 'pyparsing' -Failed to import apbs.input_file.process. -Possible hints: * AttributeError: module 'apbs' has no attribute 'input_file' -* ModuleNotFoundError: No module named 'pyparsing' Failed to import apbs.input_file.calculate.finite_difference. Possible hints: -* AttributeError: module 'apbs' has no attribute 'input_file' * ModuleNotFoundError: No module named 'pyparsing' +* AttributeError: module 'apbs' has no attribute 'input_file' Failed to import apbs.input_file.calculate. Possible hints: -* AttributeError: module 'apbs' has no attribute 'input_file' * ModuleNotFoundError: No module named 'pyparsing' +* AttributeError: module 'apbs' has no attribute 'input_file' Failed to import apbs.input_file.calculate.generic. Possible hints: +* ModuleNotFoundError: No module named 'pyparsing' +* AttributeError: module 'apbs' has no attribute 'input_file' +Failed to import apbs.input_file.read. +Possible hints: +* ModuleNotFoundError: No module named 'pyparsing' * AttributeError: module 'apbs' has no attribute 'input_file' +Failed to import apbs.input_file.process. +Possible hints: * ModuleNotFoundError: No module named 'pyparsing' +* AttributeError: module 'apbs' has no attribute 'input_file' loading intersphinx inventory from https://docs.python.org/3/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) building [mo]: targets for 0 po files that are out of date building [html]: targets for 127 source files that are out of date updating environment: [new config] 127 added, 0 changed, 0 removed @@ -4152,7 +4232,7 @@ dh_prep -O--buildsystem=cmake dh_installdirs -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/apbs-3.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/apbs-3.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/apbs-3.4.1 -B/build/apbs-3.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4700,20 +4780,20 @@ -- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin -- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/born -- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/coulomb --- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/tensor2dx -- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/uhbd_asc2bin -- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/mergedx --- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/mergedx2 -- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/similarity --- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/smooth --- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/dx2mol +-- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/mergedx2 -- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/analysis --- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/dxmath --- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/value +-- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/dx2uhbd -- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/del2dx +-- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/dx2mol +-- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/dxmath +-- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/tensor2dx +-- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/smooth -- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/multivalue --- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/dx2uhbd -- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/benchmark +-- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/value -- Installing: /build/apbs-3.4.1/debian/tmp/usr/share/apbs/tools/bin/mgmesh make[1]: Leaving directory '/build/apbs-3.4.1/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_install @@ -4724,7 +4804,7 @@ -------------------------------------------------------------------------------- Testing forces from apbs-forces.in -Checking forces for input file apbs-forces.inChecking Polar ForcesChecking Apolar ForcesElapsed time: 0.002159 seconds +Checking forces for input file apbs-forces.inChecking Polar ForcesChecking Apolar ForcesElapsed time: 0.024932 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-mol-auto.in @@ -5002,7 +5082,7 @@ *** PASSED *** Testing computed result against expected result (-2.297735526282e+02, -2.297735411962e+02) *** PASSED *** -Elapsed time: 15.137139 seconds +Elapsed time: 46.115114 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-auto.in @@ -5284,7 +5364,7 @@ *** PASSED *** Testing computed result against expected result (-2.290124252387e+02, -2.290124171992e+02) *** PASSED *** -Elapsed time: 12.530129 seconds +Elapsed time: 31.060393 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-mol-parallel.in @@ -6428,7 +6508,7 @@ *** PASSED *** Testing computed result against expected result (-2.304918486746e+02, -2.304918086635e+02) *** PASSED *** -Elapsed time: 102.087605 seconds +Elapsed time: 143.643709 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-parallel.in @@ -7572,9 +7652,9 @@ *** PASSED *** Testing computed result against expected result (-2.293871439560e+02, -2.293871354771e+02) *** PASSED *** -Elapsed time: 136.204542 seconds +Elapsed time: 185.863931 seconds -------------------------------------------------------------------------------- -Total elapsed time: 265.961574 seconds +Total elapsed time: 406.708079 seconds Test results have been logged -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- @@ -7849,8 +7929,8 @@ PRINT STATEMENTS print energy 3 (complex) - 2 (mol2) - 1 (mol1) end - Local net energy (PE 0) = 1.048683058625E+02 kJ/mol - Global net ELEC energy = 1.048683058625E+02 kJ/mol + Local net energy (PE 0) = 1.048683058628E+02 kJ/mol + Global net ELEC energy = 1.048683058628E+02 kJ/mol ---------------------------------------- CLEANING UP AND SHUTTING DOWN... Destroying force arrays. @@ -7875,9 +7955,9 @@ *** PASSED *** Testing computed result against expected result (5.836028296532e+05, 5.836028296532e+05) *** PASSED *** -Testing computed result against expected result (1.048683058625e+02, 1.048683060915e+02) +Testing computed result against expected result (1.048683058628e+02, 1.048683060915e+02) *** PASSED *** -Elapsed time: 464.563346 seconds +Elapsed time: 24054.685079 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-auto.in @@ -7885,7 +7965,7 @@ Checking for intermediate energies in input file apbs-mol-auto.out EXPECTED COMPUTED: 7 EXPECTED EXPECTED: 7 -COMPUTED: [152761.7850342, 291951.0754196, 152767.184488, 291546.8859278, 305631.7807611, 583602.8296532, 104.8683058625] +COMPUTED: [152761.7850342, 291951.0754196, 152767.184488, 291546.8859278, 305631.7807611, 583602.8296532, 104.8683058628] EXPECTED: ['1.52761785034200E+05', '2.91951075419600E+05', '1.52767184488000E+05', '2.91546885927800E+05', '3.0563178076110E+05', '5.8360282965320E+05', '1.048683060915E+02'] COMPUTED RESULT 152761.7850342 COMPUTED RESULT 291951.0754196 @@ -7893,7 +7973,7 @@ COMPUTED RESULT 291546.8859278 COMPUTED RESULT 305631.7807611 COMPUTED RESULT 583602.8296532 -COMPUTED RESULT 104.8683058625 +COMPUTED RESULT 104.8683058628 BINARY: /build/apbs-3.4.1/debian/tmp/usr/bin/apbs INPUT: apbs-smol-auto.in COMMAND: ['/build/apbs-3.4.1/debian/tmp/usr/bin/apbs', 'apbs-smol-auto.in'] @@ -8178,9 +8258,9 @@ *** PASSED *** Testing computed result against expected result (1.095841077691e+02, 1.095841074454e+02) *** PASSED *** -Elapsed time: 319.391833 seconds +Elapsed time: 523.609606 seconds -------------------------------------------------------------------------------- -Total elapsed time: 783.955179 seconds +Total elapsed time: 24578.294685 seconds Test results have been logged -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- @@ -9097,9 +9177,9 @@ *** PASSED *** Testing computed result against expected result (1.192358496286e+01, 1.192358496286e+01) *** PASSED *** -Elapsed time: 42.540406 seconds +Elapsed time: 29.78863 seconds -------------------------------------------------------------------------------- -Total elapsed time: 42.540406 seconds +Total elapsed time: 29.78863 seconds Test results have been logged -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- @@ -9606,7 +9686,7 @@ *** PASSED *** Testing computed result against expected result (1.500810086371e+01, 1.500810086371e+01) *** PASSED *** -Elapsed time: 102.759689 seconds +Elapsed time: 142.997744 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file 1d7h-dmso-smol.in @@ -10116,7 +10196,7 @@ *** PASSED *** Testing computed result against expected result (1.624454192073e+01, 1.624454192072e+01) *** PASSED *** -Elapsed time: 92.551805 seconds +Elapsed time: 149.277266 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file 1d7i-dss-mol.in @@ -10626,7 +10706,7 @@ *** PASSED *** Testing computed result against expected result (1.442499933668e+01, 1.442500529301e+01) *** PASSED *** -Elapsed time: 137.888038 seconds +Elapsed time: 157.335666 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file 1d7i-dss-smol.in @@ -11136,9 +11216,9 @@ *** PASSED *** Testing computed result against expected result (1.545150742844e+01, 1.545150009785e+01) *** PASSED *** -Elapsed time: 114.047949 seconds +Elapsed time: 72.425173 seconds -------------------------------------------------------------------------------- -Total elapsed time: 447.247481 seconds +Total elapsed time: 522.035849 seconds Test results have been logged -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- @@ -11554,7 +11634,7 @@ *** PASSED *** Testing computed result against expected result (-5.246475812665e+01, -5.246475812665e+01) *** PASSED *** -Elapsed time: 95.495598 seconds +Elapsed time: 56.611991 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol.in @@ -11962,9 +12042,9 @@ *** PASSED *** Testing computed result against expected result (-5.405979017066e+01, -5.405977880082e+01) *** PASSED *** -Elapsed time: 54.047829 seconds +Elapsed time: 41.989901 seconds -------------------------------------------------------------------------------- -Total elapsed time: 149.543427 seconds +Total elapsed time: 98.601892 seconds Test results have been logged -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- @@ -12466,7 +12546,7 @@ *** PASSED *** Testing computed result against expected result (-4.745272838398e+02, -4.745272868358e+02) *** PASSED *** -Elapsed time: 51.848102 seconds +Elapsed time: 65.412734 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol.in @@ -12972,9 +13052,9 @@ *** PASSED *** Testing computed result against expected result (-4.721246714828e+02, -4.721247084138e+02) *** PASSED *** -Elapsed time: 51.208192 seconds +Elapsed time: 56.996629 seconds -------------------------------------------------------------------------------- -Total elapsed time: 103.056294 seconds +Total elapsed time: 122.409363 seconds Test results have been logged -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- @@ -13277,9 +13357,9 @@ *** PASSED *** Testing computed result against expected result (-1.125191605614e+03, -1.125192402906e+03) *** PASSED *** -Elapsed time: 19.988179 seconds +Elapsed time: 43.602982 seconds -------------------------------------------------------------------------------- -Total elapsed time: 19.988179 seconds +Total elapsed time: 43.602982 seconds Test results have been logged -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- @@ -13589,7 +13669,7 @@ *** PASSED *** Testing computed result against expected result (8.083515648730e+00, 8.083515648730e+00) *** PASSED *** -Elapsed time: 49.746719 seconds +Elapsed time: 53.809095 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-vdw.in @@ -13900,7 +13980,7 @@ *** PASSED *** Testing computed result against expected result (2.096300255723e+01, 2.096296139195e+01) *** PASSED *** -Elapsed time: 31.583922 seconds +Elapsed time: 36.764185 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-mol-surf.in @@ -14211,7 +14291,7 @@ *** PASSED *** Testing computed result against expected result (1.192607686581e+02, 1.192608095265e+02) *** PASSED *** -Elapsed time: 35.412025 seconds +Elapsed time: 49.994878 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-surf.in @@ -14522,9 +14602,9 @@ *** PASSED *** Testing computed result against expected result (1.088773280806e+02, 1.088773280806e+02) *** PASSED *** -Elapsed time: 32.043987 seconds +Elapsed time: 43.164229 seconds -------------------------------------------------------------------------------- -Total elapsed time: 148.786653 seconds +Total elapsed time: 183.732387 seconds Test results have been logged -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- @@ -14762,7 +14842,7 @@ *** PASSED *** Testing computed result against expected result (1.830820799027e+01, 1.830820799027e+01) *** PASSED *** -Elapsed time: 10.784085 seconds +Elapsed time: 9.722152 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file complex-0_2.in @@ -15004,7 +15084,7 @@ *** PASSED *** Testing computed result against expected result (8.906694086750e+00, 8.906694086750e+00) *** PASSED *** -Elapsed time: 9.455534 seconds +Elapsed time: 19.077104 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file complex-0_3.in @@ -15246,7 +15326,7 @@ *** PASSED *** Testing computed result against expected result (5.909599816984e+00, 5.909599816984e+00) *** PASSED *** -Elapsed time: 9.336399 seconds +Elapsed time: 17.276666 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file complex-0_4.in @@ -15488,9 +15568,9 @@ *** PASSED *** Testing computed result against expected result (4.430144947418e+00, 4.430144947418e+00) *** PASSED *** -Elapsed time: 12.571647 seconds +Elapsed time: 14.748044 seconds -------------------------------------------------------------------------------- -Total elapsed time: 42.147665 seconds +Total elapsed time: 60.823966 seconds Test results have been logged -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- @@ -15749,7 +15829,7 @@ *** PASSED *** Testing computed result against expected result (-3.541635359318e+02, -3.541635359318e+02) *** PASSED *** -Elapsed time: 16.344172 seconds +Elapsed time: 23.895157 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol.in @@ -16000,9 +16080,9 @@ *** PASSED *** Testing computed result against expected result (-3.536629226599e+02, -3.536628818750e+02) *** PASSED *** -Elapsed time: 10.255376 seconds +Elapsed time: 17.360911 seconds -------------------------------------------------------------------------------- -Total elapsed time: 26.599548 seconds +Total elapsed time: 41.256068 seconds Test results have been logged -------------------------------------------------------------------------------- Checking for intermediate energies in input file apbs-smol.out @@ -16059,77 +16139,77 @@ dh_fixperms -O--buildsystem=cmake -Napbs-data -Napbs-doc dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake +dwz: debian/apbs/usr/bin/apbs: DWARF compression not beneficial - old size 29540 new size 29625 dwz: debian/libapbs3/usr/lib/x86_64-linux-gnu/libapbs_pmgc.so.3: DWARF compression not beneficial - old size 144408 new size 145552 dwz: debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3: DWARF compression not beneficial - old size 91085 new size 93323 -dwz: debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libgamer.so.1.9.3: DWARF compression not beneficial - old size 926951 new size 930229 dwz: debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libmc.so.1.9.3: DWARF compression not beneficial - old size 413886 new size 423628 -dwz: debian/apbs/usr/bin/apbs: DWARF compression not beneficial - old size 29540 new size 29625 +dwz: debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libgamer.so.1.9.3: DWARF compression not beneficial - old size 926951 new size 930229 dwz: debian/python3-apbslib/usr/lib/python3/dist-packages/apbs.cpython-311-x86_64-linux-gnu.so: DWARF compression not beneficial - old size 6119267 new size 6131531 dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake -dpkg-shlibdeps: warning: symbol cos used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol tanh used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol acos used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol atan used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries dpkg-shlibdeps: warning: symbol sin used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol log used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries dpkg-shlibdeps: warning: symbol erf used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol erfc used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol sinh used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol sqrt used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries dpkg-shlibdeps: warning: symbol exp used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol cosh used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries dpkg-shlibdeps: warning: symbol asin used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol log used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol cosh used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol cos used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libvf2c.so.1.9.3 found in none of the libraries dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: symbol cosh used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol ddot_ used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol scopy_ used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries dpkg-shlibdeps: warning: symbol s_wsfe used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol sqrt used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol sdot_ used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol snrm2_ used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol saxpy_ used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol pow_ri used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol e_wsfe used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol pow_di used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol sqrtf used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol dnrm2_ used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol daxpy_ used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries dpkg-shlibdeps: warning: symbol pow_dd used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol log used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol sdot_ used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol sqrt used by debian/libfetk1.9/usr/lib/x86_64-linux-gnu/libcgcode.so.1.9.3 found in none of the libraries dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libstdc++.so.6 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libamd.so.2 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libmpi.so.40 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libcgcode.so.1.9 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libapbs_fem.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libpunc.so.1.9 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libcamd.so.2 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libgomp.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libsuitesparseconfig.so.5 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libblas.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libumfpack.so.5 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libmc.so.1.9 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libcolamd.so.2 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libvf2c.so.1.9 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libarpack.so.2 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libsuperlu.so.5 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libapbs_pmgc.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libcholmod.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libspqr.so.2 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/similarity were not linked against libccolamd.so.2 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libsuitesparseconfig.so.5 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libmpi.so.40 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libapbs_fem.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libumfpack.so.5 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libcholmod.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libmc.so.1.9 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libccolamd.so.2 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libapbs_pmgc.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libarpack.so.2 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libsuperlu.so.5 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libstdc++.so.6 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libblas.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libcamd.so.2 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libcolamd.so.2 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libspqr.so.2 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libcgcode.so.1.9 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libgomp.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libvf2c.so.1.9 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libamd.so.2 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/smooth debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/value debian/apbs/usr/lib/apbs/tools/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/born debian/apbs/usr/lib/apbs/tools/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/benchmark were not linked against libpunc.so.1.9 (they use none of the library's symbols) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake -dpkg-gencontrol: warning: Depends field of package libapbs-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libfetk-dev: substitution variable ${shlibs:Depends} used, but is not defined +dpkg-gencontrol: warning: Depends field of package libapbs-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package apbs: substitution variable ${sphinxdoc:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package apbs: substitution variable ${sphinxdoc:Depends} used, but is not defined dpkg-gencontrol: warning: package apbs-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'apbs-dbgsym' in '../apbs-dbgsym_3.4.1-5_amd64.deb'. dpkg-deb: building package 'apbs' in '../apbs_3.4.1-5_amd64.deb'. -dpkg-deb: building package 'python3-apbslib-dbgsym' in '../python3-apbslib-dbgsym_3.4.1-5_amd64.deb'. -dpkg-deb: building package 'libapbs3' in '../libapbs3_3.4.1-5_amd64.deb'. -dpkg-deb: building package 'libapbs3-dbgsym' in '../libapbs3-dbgsym_3.4.1-5_amd64.deb'. +dpkg-deb: building package 'apbs-doc' in '../apbs-doc_3.4.1-5_all.deb'. +dpkg-deb: building package 'libfetk-dev' in '../libfetk-dev_3.4.1-5_amd64.deb'. dpkg-deb: building package 'libapbs-dev' in '../libapbs-dev_3.4.1-5_amd64.deb'. +dpkg-deb: building package 'libapbs3-dbgsym' in '../libapbs3-dbgsym_3.4.1-5_amd64.deb'. dpkg-deb: building package 'apbs-data' in '../apbs-data_3.4.1-5_all.deb'. -dpkg-deb: building package 'libfetk-dev' in '../libfetk-dev_3.4.1-5_amd64.deb'. -dpkg-deb: building package 'apbs-doc' in '../apbs-doc_3.4.1-5_all.deb'. -dpkg-deb: building package 'libfetk1.9' in '../libfetk1.9_3.4.1-5_amd64.deb'. +dpkg-deb: building package 'python3-apbslib-dbgsym' in '../python3-apbslib-dbgsym_3.4.1-5_amd64.deb'. +dpkg-deb: building package 'apbs-dbgsym' in '../apbs-dbgsym_3.4.1-5_amd64.deb'. +dpkg-deb: building package 'libapbs3' in '../libapbs3_3.4.1-5_amd64.deb'. dpkg-deb: building package 'libfetk1.9-dbgsym' in '../libfetk1.9-dbgsym_3.4.1-5_amd64.deb'. +dpkg-deb: building package 'libfetk1.9' in '../libfetk1.9_3.4.1-5_amd64.deb'. dpkg-deb: building package 'python3-apbslib' in '../python3-apbslib_3.4.1-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../apbs_3.4.1-5_amd64.buildinfo dpkg-genchanges --build=binary -O../apbs_3.4.1-5_amd64.changes @@ -16138,12 +16218,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3462987/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3462987/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1931908 and its subdirectories -I: Current time: Thu Jun 1 06:16:58 -12 2023 -I: pbuilder-time-stamp: 1685643418 +I: removing directory /srv/workspace/pbuilder/3462987 and its subdirectories +I: Current time: Wed Aug 6 22:03:57 +14 2025 +I: pbuilder-time-stamp: 1754467437