--- /srv/reproducible-results/rbuild-debian/r-b-build.N6SbOCY5/b1/q2cli_2024.2.0-1_i386.changes +++ /srv/reproducible-results/rbuild-debian/r-b-build.N6SbOCY5/b2/q2cli_2024.2.0-1_i386.changes ├── Files │ @@ -1,2 +1,2 @@ │ │ - fdfa265b703da142d979ed3d1c28dc91 86896 science optional q2cli_2024.2.0-1_all.deb │ + 0a18a2cc0d0e6e5c17f2aa89b6a737a3 86904 science optional q2cli_2024.2.0-1_all.deb ├── q2cli_2024.2.0-1_all.deb │ ├── file list │ │ @@ -1,3 +1,3 @@ │ │ -rw-r--r-- 0 0 0 4 2024-02-18 17:09:55.000000 debian-binary │ │ -rw-r--r-- 0 0 0 2548 2024-02-18 17:09:55.000000 control.tar.xz │ │ --rw-r--r-- 0 0 0 84156 2024-02-18 17:09:55.000000 data.tar.xz │ │ +-rw-r--r-- 0 0 0 84164 2024-02-18 17:09:55.000000 data.tar.xz │ ├── control.tar.xz │ │ ├── control.tar │ │ │ ├── ./md5sums │ │ │ │ ├── ./md5sums │ │ │ │ │┄ Files differ │ ├── data.tar.xz │ │ ├── data.tar │ │ │ ├── file list │ │ │ │ @@ -48,19 +48,19 @@ │ │ │ │ -rw-r--r-- 0 root (0) root (0) 126 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/q2cli-2024.2.0.egg-info/PKG-INFO │ │ │ │ -rw-r--r-- 0 root (0) root (0) 1 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/q2cli-2024.2.0.egg-info/dependency_links.txt │ │ │ │ -rw-r--r-- 0 root (0) root (0) 109 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/q2cli-2024.2.0.egg-info/entry_points.txt │ │ │ │ -rw-r--r-- 0 root (0) root (0) 1 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/q2cli-2024.2.0.egg-info/not-zip-safe │ │ │ │ -rw-r--r-- 0 root (0) root (0) 6 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/q2cli-2024.2.0.egg-info/top_level.txt │ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/runinfo/ │ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/runinfo/000/ │ │ │ │ --rw-r--r-- 0 root (0) root (0) 52792 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/runinfo/000/parsl.log │ │ │ │ +-rw-r--r-- 0 root (0) root (0) 52508 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/runinfo/000/parsl.log │ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/runinfo/001/ │ │ │ │ --rw-r--r-- 0 root (0) root (0) 35331 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/runinfo/001/parsl.log │ │ │ │ +-rw-r--r-- 0 root (0) root (0) 35141 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/runinfo/001/parsl.log │ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/runinfo/002/ │ │ │ │ --rw-r--r-- 0 root (0) root (0) 17870 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/runinfo/002/parsl.log │ │ │ │ +-rw-r--r-- 0 root (0) root (0) 17768 2024-02-18 17:09:55.000000 ./usr/lib/python3/dist-packages/runinfo/002/parsl.log │ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-02-18 17:09:55.000000 ./usr/share/ │ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-02-18 17:09:55.000000 ./usr/share/bash-completion/ │ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-02-18 17:09:55.000000 ./usr/share/bash-completion/completions/ │ │ │ │ -rw-r--r-- 0 root (0) root (0) 1736 2024-02-18 17:09:55.000000 ./usr/share/bash-completion/completions/qiime │ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-02-18 17:09:55.000000 ./usr/share/doc/ │ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-02-18 17:09:55.000000 ./usr/share/doc/q2cli/ │ │ │ │ -rw-r--r-- 0 root (0) root (0) 1419 2024-02-18 17:09:55.000000 ./usr/share/doc/q2cli/changelog.Debian.gz │ │ │ ├── ./usr/lib/python3/dist-packages/runinfo/000/parsl.log │ │ │ │ @@ -1,8 +1,8 @@ │ │ │ │ -1750818577.046721 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:91 __init__ INFO: Starting DataFlowKernel with config │ │ │ │ +1716408565.916578 2024-05-23 10:09:25 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:91 __init__ INFO: Starting DataFlowKernel with config │ │ │ │ Config( │ │ │ │ app_cache=True, │ │ │ │ checkpoint_files=None, │ │ │ │ checkpoint_mode=None, │ │ │ │ checkpoint_period=None, │ │ │ │ executors=(ThreadPoolExecutor( │ │ │ │ label='default', │ │ │ │ @@ -20,108 +20,108 @@ │ │ │ │ retry_handler=None, │ │ │ │ run_dir='runinfo', │ │ │ │ std_autopath=None, │ │ │ │ strategy='none', │ │ │ │ strategy_period=5, │ │ │ │ usage_tracking=False │ │ │ │ ) │ │ │ │ -1750818577.046944 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:93 __init__ INFO: Parsl version: 1.3.0-dev │ │ │ │ -1750818577.047087 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:114 __init__ DEBUG: Tracking status: False │ │ │ │ -1750818577.047649 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:148 construct_start_message DEBUG: Usage tracking start message: {'correlator': '142bb412-f701-4e35-a74f-7760663a6199', 'parsl_v': '1.3.0-dev', 'python_v': '3.11.9', 'platform.system': 'Linux', 'start': 1750818577, 'components': [{'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ -1750818577.047824 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:121 __init__ INFO: Run id is: a39b169f-cb83-4d1f-9dc7-95730d4114d8 │ │ │ │ -1750818577.134554 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ -1750818577.134682 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ -1750818577.134768 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/qiime2/sdk/parallel_config.py │ │ │ │ -1750818577.134845 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:134 __init__ DEBUG: Using parallel_config.py as workflow name │ │ │ │ -1750818577.135005 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.memoization:163 __init__ INFO: App caching initialized │ │ │ │ -1750818577.135098 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.jobs.strategy:145 __init__ DEBUG: Scaling strategy: none │ │ │ │ -1750818577.137027 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:994 submit DEBUG: Task 0 will be sent to executor _parsl_internal │ │ │ │ -1750818577.137167 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818577.137257 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1072 submit INFO: Task 0 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818577.137348 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1078 submit DEBUG: Task 0 set to pending state with AppFuture: │ │ │ │ -1750818577.137437 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.memoization:222 check_memo DEBUG: Task 0 will not be memoized │ │ │ │ -1750818577.138288 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 0 try 0 launched on executor _parsl_internal │ │ │ │ -1750818577.138399 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818577.138482 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818577.141539 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:994 submit DEBUG: Task 1 will be sent to executor test │ │ │ │ -1750818577.141683 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818577.141775 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1072 submit INFO: Task 1 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818577.141860 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1078 submit DEBUG: Task 1 set to pending state with AppFuture: │ │ │ │ -1750818577.141968 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.memoization:222 check_memo DEBUG: Task 1 will not be memoized │ │ │ │ -1750818577.142555 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 1 try 0 launched on executor test │ │ │ │ -1750818577.142671 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ -1750818577.142751 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ -1750818577.143191 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:994 submit DEBUG: Task 2 will be sent to executor default │ │ │ │ -1750818577.143614 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818577.143737 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1072 submit INFO: Task 2 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818577.143841 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1078 submit DEBUG: Task 2 set to pending state with AppFuture: │ │ │ │ -1750818577.143944 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.memoization:222 check_memo DEBUG: Task 2 will not be memoized │ │ │ │ -1750818577.144512 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 2 try 0 launched on executor default │ │ │ │ -1750818577.144932 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ -1750818577.145018 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ -1750818577.281739 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-1_0-4018142016 parsl.dataflow.dflow:570 _complete_task INFO: Task 1 completed (launched -> exec_done) │ │ │ │ -1750818577.282027 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-1_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ -1750818577.282225 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-1_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ -1750818577.285214 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-0_0-4007656256 parsl.dataflow.dflow:570 _complete_task INFO: Task 2 completed (launched -> exec_done) │ │ │ │ -1750818577.285353 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-0_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ -1750818577.285676 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-0_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ -1750818577.503534 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:994 submit DEBUG: Task 3 will be sent to executor test │ │ │ │ -1750818577.503701 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818577.503795 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1072 submit INFO: Task 3 submitted for App _create_future, not waiting on any dependency │ │ │ │ -1750818577.503886 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1078 submit DEBUG: Task 3 set to pending state with AppFuture: │ │ │ │ -1750818577.503977 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.memoization:222 check_memo DEBUG: Task 3 will not be memoized │ │ │ │ -1750818577.504093 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 3 try 0 launched on executor test │ │ │ │ -1750818577.504181 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ -1750818577.504258 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ -1750818577.504387 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818577.504469 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-2_0-4028627776 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818577.504573 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-1_0-4018142016 parsl.dataflow.dflow:570 _complete_task INFO: Task 3 completed (launched -> exec_done) │ │ │ │ -1750818577.504808 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-1_0-4018142016 parsl.dataflow.dflow:453 handle_join_update DEBUG: Join callback for task 0, inner_app_future │ │ │ │ -1750818577.504908 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-1_0-4018142016 parsl.dataflow.dflow:570 _complete_task INFO: Task 0 completed (joining -> exec_done) │ │ │ │ -1750818577.505018 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-1_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818577.505126 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1220 cleanup INFO: DFK cleanup initiated │ │ │ │ -1750818577.505218 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-1_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818577.505364 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1116 log_task_states INFO: Summary of tasks in DFK: │ │ │ │ -1750818577.505479 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-1_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ -1750818577.505607 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.unsched: 0 │ │ │ │ -1750818577.505715 2025-06-24 14:29:37 MainProcess-128551 ThreadPoolExecutor-1_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ -1750818577.505817 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.pending: 0 │ │ │ │ -1750818577.506033 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running: 0 │ │ │ │ -1750818577.506104 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.exec_done: 4 │ │ │ │ -1750818577.506199 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.failed: 0 │ │ │ │ -1750818577.506268 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.dep_fail: 0 │ │ │ │ -1750818577.506331 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.launched: 0 │ │ │ │ -1750818577.506395 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.fail_retryable: 0 │ │ │ │ -1750818577.506461 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.memo_done: 0 │ │ │ │ -1750818577.506521 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.joining: 0 │ │ │ │ -1750818577.506582 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running_ended: 0 │ │ │ │ -1750818577.506641 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1122 log_task_states INFO: End of summary │ │ │ │ -1750818577.506699 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1241 cleanup INFO: Sending end message for usage tracking │ │ │ │ -1750818577.507005 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:172 construct_end_message DEBUG: Usage tracking end message (unencoded): {'correlator': '142bb412-f701-4e35-a74f-7760663a6199', 'end': 1750818577, 'components': [{'c': 'parsl.dataflow.dflow.DataFlowKernel', 'app_count': 4, 'app_fails': 0}, {'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ -1750818577.507135 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1244 cleanup INFO: Closed usage tracking │ │ │ │ -1750818577.507206 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1246 cleanup INFO: Closing job status poller │ │ │ │ -1750818577.507365 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1248 cleanup INFO: Terminated job status poller │ │ │ │ -1750818577.507447 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1250 cleanup INFO: Shutting down executors │ │ │ │ -1750818577.507509 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor default │ │ │ │ -1750818577.507576 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818577.507735 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818577.507817 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor default │ │ │ │ -1750818577.507876 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor test │ │ │ │ -1750818577.507932 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818577.508081 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818577.508159 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor test │ │ │ │ -1750818577.508218 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor _parsl_internal │ │ │ │ -1750818577.508274 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818577.508416 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818577.508499 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor _parsl_internal │ │ │ │ -1750818577.508560 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1257 cleanup INFO: Terminated executors │ │ │ │ -1750818577.508622 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1273 cleanup INFO: DFK cleanup complete │ │ │ │ -1750818577.508687 2025-06-24 14:29:37 MainProcess-128551 MainThread-4156798720 parsl.process_loggers:28 wrapped DEBUG: Normal ending for cleanup on thread MainThread │ │ │ │ -1750818579.570608 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.rundirs:35 make_rundir DEBUG: Parsl run initializing in rundir: runinfo/001 │ │ │ │ -1750818579.571566 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:91 __init__ INFO: Starting DataFlowKernel with config │ │ │ │ +1716408565.917438 2024-05-23 10:09:25 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:93 __init__ INFO: Parsl version: 1.3.0-dev │ │ │ │ +1716408565.917949 2024-05-23 10:09:25 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:114 __init__ DEBUG: Tracking status: False │ │ │ │ +1716408565.920181 2024-05-23 10:09:25 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:148 construct_start_message DEBUG: Usage tracking start message: {'correlator': 'c2a27480-2e58-45c7-8755-e3222b5094e3', 'parsl_v': '1.3.0-dev', 'python_v': '3.11.9', 'platform.system': 'Linux', 'start': 1716408565, 'components': [{'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ +1716408565.920511 2024-05-23 10:09:25 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:121 __init__ INFO: Run id is: d4575aa5-6c94-4596-a52f-90bbb0dc2b85 │ │ │ │ +1716408566.184085 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ +1716408566.184386 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ +1716408566.184573 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/qiime2/sdk/parallel_config.py │ │ │ │ +1716408566.184765 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:134 __init__ DEBUG: Using parallel_config.py as workflow name │ │ │ │ +1716408566.185205 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.memoization:163 __init__ INFO: App caching initialized │ │ │ │ +1716408566.185441 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.jobs.strategy:145 __init__ DEBUG: Scaling strategy: none │ │ │ │ +1716408566.191047 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:994 submit DEBUG: Task 0 will be sent to executor _parsl_internal │ │ │ │ +1716408566.191331 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408566.191523 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1072 submit INFO: Task 0 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408566.191718 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1078 submit DEBUG: Task 0 set to pending state with AppFuture: │ │ │ │ +1716408566.191918 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.memoization:222 check_memo DEBUG: Task 0 will not be memoized │ │ │ │ +1716408566.193704 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 0 try 0 launched on executor _parsl_internal │ │ │ │ +1716408566.193969 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408566.194168 2024-05-23 10:09:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408566.200486 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:994 submit DEBUG: Task 1 will be sent to executor test │ │ │ │ +1716408566.200756 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408566.200901 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1072 submit INFO: Task 1 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408566.201053 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1078 submit DEBUG: Task 1 set to pending state with AppFuture: │ │ │ │ +1716408566.201309 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.memoization:222 check_memo DEBUG: Task 1 will not be memoized │ │ │ │ +1716408566.202354 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 1 try 0 launched on executor test │ │ │ │ +1716408566.202578 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ +1716408566.202772 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ +1716408566.203656 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:994 submit DEBUG: Task 2 will be sent to executor default │ │ │ │ +1716408566.203909 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408566.204791 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1072 submit INFO: Task 2 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408566.205018 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1078 submit DEBUG: Task 2 set to pending state with AppFuture: │ │ │ │ +1716408566.205287 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.memoization:222 check_memo DEBUG: Task 2 will not be memoized │ │ │ │ +1716408566.206650 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 2 try 0 launched on executor default │ │ │ │ +1716408566.206887 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ +1716408566.207059 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ +1716408566.499123 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-1_0-4016044864 parsl.dataflow.dflow:570 _complete_task INFO: Task 1 completed (launched -> exec_done) │ │ │ │ +1716408566.499453 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-1_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ +1716408566.499637 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-1_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ +1716408566.516306 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-0_0-4005559104 parsl.dataflow.dflow:570 _complete_task INFO: Task 2 completed (launched -> exec_done) │ │ │ │ +1716408566.516604 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-0_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ +1716408566.516798 2024-05-23 10:09:26 MainProcess-34166 ThreadPoolExecutor-0_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ +1716408567.069696 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:994 submit DEBUG: Task 3 will be sent to executor test │ │ │ │ +1716408567.070044 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408567.070238 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1072 submit INFO: Task 3 submitted for App _create_future, not waiting on any dependency │ │ │ │ +1716408567.070454 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1078 submit DEBUG: Task 3 set to pending state with AppFuture: │ │ │ │ +1716408567.070651 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.memoization:222 check_memo DEBUG: Task 3 will not be memoized │ │ │ │ +1716408567.070908 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 3 try 0 launched on executor test │ │ │ │ +1716408567.071076 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ +1716408567.071239 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ +1716408567.071497 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408567.071708 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-2_0-4026530624 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408567.072500 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-1_0-4016044864 parsl.dataflow.dflow:570 _complete_task INFO: Task 3 completed (launched -> exec_done) │ │ │ │ +1716408567.072837 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-1_0-4016044864 parsl.dataflow.dflow:453 handle_join_update DEBUG: Join callback for task 0, inner_app_future │ │ │ │ +1716408567.073059 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-1_0-4016044864 parsl.dataflow.dflow:570 _complete_task INFO: Task 0 completed (joining -> exec_done) │ │ │ │ +1716408567.073420 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-1_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408567.073615 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-1_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408567.073788 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-1_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ +1716408567.073973 2024-05-23 10:09:27 MainProcess-34166 ThreadPoolExecutor-1_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ +1716408567.074296 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1220 cleanup INFO: DFK cleanup initiated │ │ │ │ +1716408567.074479 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1116 log_task_states INFO: Summary of tasks in DFK: │ │ │ │ +1716408567.074675 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.unsched: 0 │ │ │ │ +1716408567.074858 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.pending: 0 │ │ │ │ +1716408567.075040 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running: 0 │ │ │ │ +1716408567.075236 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.exec_done: 4 │ │ │ │ +1716408567.075510 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.failed: 0 │ │ │ │ +1716408567.075695 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.dep_fail: 0 │ │ │ │ +1716408567.075875 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.launched: 0 │ │ │ │ +1716408567.076053 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.fail_retryable: 0 │ │ │ │ +1716408567.076230 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.memo_done: 0 │ │ │ │ +1716408567.076435 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.joining: 0 │ │ │ │ +1716408567.076641 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running_ended: 0 │ │ │ │ +1716408567.076838 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1122 log_task_states INFO: End of summary │ │ │ │ +1716408567.077024 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1241 cleanup INFO: Sending end message for usage tracking │ │ │ │ +1716408567.078658 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:172 construct_end_message DEBUG: Usage tracking end message (unencoded): {'correlator': 'c2a27480-2e58-45c7-8755-e3222b5094e3', 'end': 1716408567, 'components': [{'c': 'parsl.dataflow.dflow.DataFlowKernel', 'app_count': 4, 'app_fails': 0}, {'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ +1716408567.078913 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1244 cleanup INFO: Closed usage tracking │ │ │ │ +1716408567.079067 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1246 cleanup INFO: Closing job status poller │ │ │ │ +1716408567.080793 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1248 cleanup INFO: Terminated job status poller │ │ │ │ +1716408567.081038 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1250 cleanup INFO: Shutting down executors │ │ │ │ +1716408567.081426 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor default │ │ │ │ +1716408567.081646 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408567.082330 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408567.082544 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor default │ │ │ │ +1716408567.082733 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor test │ │ │ │ +1716408567.082923 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408567.083246 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408567.083421 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor test │ │ │ │ +1716408567.083592 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor _parsl_internal │ │ │ │ +1716408567.083754 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408567.087815 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408567.088041 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor _parsl_internal │ │ │ │ +1716408567.088214 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1257 cleanup INFO: Terminated executors │ │ │ │ +1716408567.088395 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1273 cleanup INFO: DFK cleanup complete │ │ │ │ +1716408567.088583 2024-05-23 10:09:27 MainProcess-34166 MainThread-4160296704 parsl.process_loggers:28 wrapped DEBUG: Normal ending for cleanup on thread MainThread │ │ │ │ +1716408572.392887 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.rundirs:35 make_rundir DEBUG: Parsl run initializing in rundir: runinfo/001 │ │ │ │ +1716408572.394170 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:91 __init__ INFO: Starting DataFlowKernel with config │ │ │ │ Config( │ │ │ │ app_cache=True, │ │ │ │ checkpoint_files=None, │ │ │ │ checkpoint_mode=None, │ │ │ │ checkpoint_period=None, │ │ │ │ executors=(ThreadPoolExecutor( │ │ │ │ label='default', │ │ │ │ @@ -139,108 +139,108 @@ │ │ │ │ retry_handler=None, │ │ │ │ run_dir='runinfo', │ │ │ │ std_autopath=None, │ │ │ │ strategy='none', │ │ │ │ strategy_period=5, │ │ │ │ usage_tracking=False │ │ │ │ ) │ │ │ │ -1750818579.571749 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:93 __init__ INFO: Parsl version: 1.3.0-dev │ │ │ │ -1750818579.571888 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:114 __init__ DEBUG: Tracking status: False │ │ │ │ -1750818579.572185 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:148 construct_start_message DEBUG: Usage tracking start message: {'correlator': '1d178cfe-c9fa-4906-8b2f-b8fbf41c77b9', 'parsl_v': '1.3.0-dev', 'python_v': '3.11.9', 'platform.system': 'Linux', 'start': 1750818579, 'components': [{'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ -1750818579.572348 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:121 __init__ INFO: Run id is: 800de42e-28ab-40ab-a94a-e89c5ec3a496 │ │ │ │ -1750818579.582104 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ -1750818579.582234 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ -1750818579.582324 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/qiime2/sdk/parallel_config.py │ │ │ │ -1750818579.582407 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:134 __init__ DEBUG: Using parallel_config.py as workflow name │ │ │ │ -1750818579.582575 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.memoization:163 __init__ INFO: App caching initialized │ │ │ │ -1750818579.582683 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.jobs.strategy:145 __init__ DEBUG: Scaling strategy: none │ │ │ │ -1750818579.584059 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:994 submit DEBUG: Task 0 will be sent to executor _parsl_internal │ │ │ │ -1750818579.584216 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818579.584330 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1072 submit INFO: Task 0 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818579.584431 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1078 submit DEBUG: Task 0 set to pending state with AppFuture: │ │ │ │ -1750818579.584529 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.memoization:222 check_memo DEBUG: Task 0 will not be memoized │ │ │ │ -1750818579.585301 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 0 try 0 launched on executor _parsl_internal │ │ │ │ -1750818579.585431 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818579.585633 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818579.588473 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:994 submit DEBUG: Task 1 will be sent to executor test │ │ │ │ -1750818579.588639 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818579.588746 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1072 submit INFO: Task 1 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818579.588846 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1078 submit DEBUG: Task 1 set to pending state with AppFuture: │ │ │ │ -1750818579.588947 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.memoization:222 check_memo DEBUG: Task 1 will not be memoized │ │ │ │ -1750818579.589489 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 1 try 0 launched on executor test │ │ │ │ -1750818579.589622 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ -1750818579.589796 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ -1750818579.590427 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:994 submit DEBUG: Task 2 will be sent to executor default │ │ │ │ -1750818579.590901 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818579.591039 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1072 submit INFO: Task 2 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818579.591174 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1078 submit DEBUG: Task 2 set to pending state with AppFuture: │ │ │ │ -1750818579.591337 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.memoization:222 check_memo DEBUG: Task 2 will not be memoized │ │ │ │ -1750818579.591923 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 2 try 0 launched on executor default │ │ │ │ -1750818579.592172 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ -1750818579.592278 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ -1750818579.733158 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-3_0-4038650688 parsl.dataflow.dflow:570 _complete_task INFO: Task 2 completed (launched -> exec_done) │ │ │ │ -1750818579.733422 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-3_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ -1750818579.733532 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-3_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ -1750818579.735686 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-4_0-4007656256 parsl.dataflow.dflow:570 _complete_task INFO: Task 1 completed (launched -> exec_done) │ │ │ │ -1750818579.735847 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-4_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ -1750818579.735959 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-4_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ -1750818579.953963 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:994 submit DEBUG: Task 3 will be sent to executor test │ │ │ │ -1750818579.954152 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818579.954258 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1072 submit INFO: Task 3 submitted for App _create_future, not waiting on any dependency │ │ │ │ -1750818579.954363 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1078 submit DEBUG: Task 3 set to pending state with AppFuture: │ │ │ │ -1750818579.954466 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.memoization:222 check_memo DEBUG: Task 3 will not be memoized │ │ │ │ -1750818579.954593 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 3 try 0 launched on executor test │ │ │ │ -1750818579.954702 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ -1750818579.954876 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ -1750818579.954986 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:570 _complete_task INFO: Task 3 completed (launched -> exec_done) │ │ │ │ -1750818579.955087 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ -1750818579.955167 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ -1750818579.955290 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:453 handle_join_update DEBUG: Join callback for task 0, inner_app_future │ │ │ │ -1750818579.955389 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:570 _complete_task INFO: Task 0 completed (joining -> exec_done) │ │ │ │ -1750818579.955496 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818579.955596 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818579.955708 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1220 cleanup INFO: DFK cleanup initiated │ │ │ │ -1750818579.955834 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818579.955980 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1116 log_task_states INFO: Summary of tasks in DFK: │ │ │ │ -1750818579.956130 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818579.956275 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.unsched: 0 │ │ │ │ -1750818579.956478 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.pending: 0 │ │ │ │ -1750818579.956562 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running: 0 │ │ │ │ -1750818579.956641 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.exec_done: 4 │ │ │ │ -1750818579.956730 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.failed: 0 │ │ │ │ -1750818579.956810 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.dep_fail: 0 │ │ │ │ -1750818579.956887 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.launched: 0 │ │ │ │ -1750818579.956964 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.fail_retryable: 0 │ │ │ │ -1750818579.957043 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.memo_done: 0 │ │ │ │ -1750818579.957123 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.joining: 0 │ │ │ │ -1750818579.957201 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running_ended: 0 │ │ │ │ -1750818579.957276 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1122 log_task_states INFO: End of summary │ │ │ │ -1750818579.957351 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1241 cleanup INFO: Sending end message for usage tracking │ │ │ │ -1750818579.957682 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:172 construct_end_message DEBUG: Usage tracking end message (unencoded): {'correlator': '1d178cfe-c9fa-4906-8b2f-b8fbf41c77b9', 'end': 1750818579, 'components': [{'c': 'parsl.dataflow.dflow.DataFlowKernel', 'app_count': 4, 'app_fails': 0}, {'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ -1750818579.957824 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1244 cleanup INFO: Closed usage tracking │ │ │ │ -1750818579.957944 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1246 cleanup INFO: Closing job status poller │ │ │ │ -1750818579.958121 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1248 cleanup INFO: Terminated job status poller │ │ │ │ -1750818579.958230 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1250 cleanup INFO: Shutting down executors │ │ │ │ -1750818579.958310 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor default │ │ │ │ -1750818579.958392 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818579.958557 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818579.958666 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor default │ │ │ │ -1750818579.958743 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor test │ │ │ │ -1750818579.958815 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818579.958972 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818579.959069 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor test │ │ │ │ -1750818579.959144 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor _parsl_internal │ │ │ │ -1750818579.959218 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818579.959381 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818579.959480 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor _parsl_internal │ │ │ │ -1750818579.959557 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1257 cleanup INFO: Terminated executors │ │ │ │ -1750818579.959633 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1273 cleanup INFO: DFK cleanup complete │ │ │ │ -1750818579.959726 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.process_loggers:28 wrapped DEBUG: Normal ending for cleanup on thread MainThread │ │ │ │ -1750818583.623291 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.rundirs:35 make_rundir DEBUG: Parsl run initializing in rundir: runinfo/002 │ │ │ │ -1750818583.624105 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:91 __init__ INFO: Starting DataFlowKernel with config │ │ │ │ +1716408572.394439 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:93 __init__ INFO: Parsl version: 1.3.0-dev │ │ │ │ +1716408572.394684 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:114 __init__ DEBUG: Tracking status: False │ │ │ │ +1716408572.395285 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:148 construct_start_message DEBUG: Usage tracking start message: {'correlator': 'c395c084-5e11-4135-b179-eef1f8c105be', 'parsl_v': '1.3.0-dev', 'python_v': '3.11.9', 'platform.system': 'Linux', 'start': 1716408572, 'components': [{'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ +1716408572.395622 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:121 __init__ INFO: Run id is: b3fc7b0c-6388-411a-aa71-860659893906 │ │ │ │ +1716408572.414355 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ +1716408572.414653 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ +1716408572.414822 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/qiime2/sdk/parallel_config.py │ │ │ │ +1716408572.414989 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:134 __init__ DEBUG: Using parallel_config.py as workflow name │ │ │ │ +1716408572.415312 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.memoization:163 __init__ INFO: App caching initialized │ │ │ │ +1716408572.415550 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.jobs.strategy:145 __init__ DEBUG: Scaling strategy: none │ │ │ │ +1716408572.420032 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:994 submit DEBUG: Task 0 will be sent to executor _parsl_internal │ │ │ │ +1716408572.420295 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408572.420490 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1072 submit INFO: Task 0 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408572.420680 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1078 submit DEBUG: Task 0 set to pending state with AppFuture: │ │ │ │ +1716408572.420870 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.memoization:222 check_memo DEBUG: Task 0 will not be memoized │ │ │ │ +1716408572.422529 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 0 try 0 launched on executor _parsl_internal │ │ │ │ +1716408572.422802 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408572.423003 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408572.428554 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:994 submit DEBUG: Task 1 will be sent to executor test │ │ │ │ +1716408572.428849 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408572.429031 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1072 submit INFO: Task 1 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408572.429358 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1078 submit DEBUG: Task 1 set to pending state with AppFuture: │ │ │ │ +1716408572.429597 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.memoization:222 check_memo DEBUG: Task 1 will not be memoized │ │ │ │ +1716408572.430851 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 1 try 0 launched on executor test │ │ │ │ +1716408572.431148 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ +1716408572.431333 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ +1716408572.432337 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:994 submit DEBUG: Task 2 will be sent to executor default │ │ │ │ +1716408572.432944 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408572.433245 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1072 submit INFO: Task 2 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408572.433527 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1078 submit DEBUG: Task 2 set to pending state with AppFuture: │ │ │ │ +1716408572.433787 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.memoization:222 check_memo DEBUG: Task 2 will not be memoized │ │ │ │ +1716408572.435434 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 2 try 0 launched on executor default │ │ │ │ +1716408572.435747 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ +1716408572.435966 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ +1716408572.765580 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:570 _complete_task INFO: Task 2 completed (launched -> exec_done) │ │ │ │ +1716408572.765959 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ +1716408572.766174 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ +1716408572.767920 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-4_0-4005559104 parsl.dataflow.dflow:570 _complete_task INFO: Task 1 completed (launched -> exec_done) │ │ │ │ +1716408572.768204 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-4_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ +1716408572.768367 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-4_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ +1716408573.292052 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:994 submit DEBUG: Task 3 will be sent to executor default │ │ │ │ +1716408573.292428 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408573.292657 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1072 submit INFO: Task 3 submitted for App _create_future, not waiting on any dependency │ │ │ │ +1716408573.292900 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1078 submit DEBUG: Task 3 set to pending state with AppFuture: │ │ │ │ +1716408573.293120 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.memoization:222 check_memo DEBUG: Task 3 will not be memoized │ │ │ │ +1716408573.293821 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 3 try 0 launched on executor default │ │ │ │ +1716408573.294046 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ +1716408573.294327 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ +1716408573.294704 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408573.294962 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408573.295647 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:570 _complete_task INFO: Task 3 completed (launched -> exec_done) │ │ │ │ +1716408573.296011 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:453 handle_join_update DEBUG: Join callback for task 0, inner_app_future │ │ │ │ +1716408573.296310 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:570 _complete_task INFO: Task 0 completed (joining -> exec_done) │ │ │ │ +1716408573.296580 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408573.296841 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408573.297096 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ +1716408573.297326 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1220 cleanup INFO: DFK cleanup initiated │ │ │ │ +1716408573.297728 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ +1716408573.298062 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1116 log_task_states INFO: Summary of tasks in DFK: │ │ │ │ +1716408573.298585 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.unsched: 0 │ │ │ │ +1716408573.298837 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.pending: 0 │ │ │ │ +1716408573.299075 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running: 0 │ │ │ │ +1716408573.299323 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.exec_done: 4 │ │ │ │ +1716408573.299603 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.failed: 0 │ │ │ │ +1716408573.299854 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.dep_fail: 0 │ │ │ │ +1716408573.300100 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.launched: 0 │ │ │ │ +1716408573.300341 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.fail_retryable: 0 │ │ │ │ +1716408573.300588 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.memo_done: 0 │ │ │ │ +1716408573.300833 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.joining: 0 │ │ │ │ +1716408573.301041 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running_ended: 0 │ │ │ │ +1716408573.301292 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1122 log_task_states INFO: End of summary │ │ │ │ +1716408573.301475 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1241 cleanup INFO: Sending end message for usage tracking │ │ │ │ +1716408573.302166 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:172 construct_end_message DEBUG: Usage tracking end message (unencoded): {'correlator': 'c395c084-5e11-4135-b179-eef1f8c105be', 'end': 1716408573, 'components': [{'c': 'parsl.dataflow.dflow.DataFlowKernel', 'app_count': 4, 'app_fails': 0}, {'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ +1716408573.302436 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1244 cleanup INFO: Closed usage tracking │ │ │ │ +1716408573.302634 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1246 cleanup INFO: Closing job status poller │ │ │ │ +1716408573.309106 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1248 cleanup INFO: Terminated job status poller │ │ │ │ +1716408573.309524 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1250 cleanup INFO: Shutting down executors │ │ │ │ +1716408573.309791 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor default │ │ │ │ +1716408573.310057 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408573.310479 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408573.310722 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor default │ │ │ │ +1716408573.310968 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor test │ │ │ │ +1716408573.311191 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408573.311601 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408573.311847 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor test │ │ │ │ +1716408573.312067 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor _parsl_internal │ │ │ │ +1716408573.312312 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408573.317401 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408573.317738 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor _parsl_internal │ │ │ │ +1716408573.317988 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1257 cleanup INFO: Terminated executors │ │ │ │ +1716408573.318249 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1273 cleanup INFO: DFK cleanup complete │ │ │ │ +1716408573.318528 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.process_loggers:28 wrapped DEBUG: Normal ending for cleanup on thread MainThread │ │ │ │ +1716408583.641929 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.rundirs:35 make_rundir DEBUG: Parsl run initializing in rundir: runinfo/002 │ │ │ │ +1716408583.644244 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:91 __init__ INFO: Starting DataFlowKernel with config │ │ │ │ Config( │ │ │ │ app_cache=True, │ │ │ │ checkpoint_files=None, │ │ │ │ checkpoint_mode=None, │ │ │ │ checkpoint_period=None, │ │ │ │ executors=(ThreadPoolExecutor( │ │ │ │ label='default', │ │ │ │ @@ -258,102 +258,102 @@ │ │ │ │ retry_handler=None, │ │ │ │ run_dir='runinfo', │ │ │ │ std_autopath=None, │ │ │ │ strategy='none', │ │ │ │ strategy_period=5, │ │ │ │ usage_tracking=False │ │ │ │ ) │ │ │ │ -1750818583.624325 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:93 __init__ INFO: Parsl version: 1.3.0-dev │ │ │ │ -1750818583.624495 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:114 __init__ DEBUG: Tracking status: False │ │ │ │ -1750818583.624824 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:148 construct_start_message DEBUG: Usage tracking start message: {'correlator': '4175db09-a7d3-473e-9d1a-76704ab06799', 'parsl_v': '1.3.0-dev', 'python_v': '3.11.9', 'platform.system': 'Linux', 'start': 1750818583, 'components': [{'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ -1750818583.625027 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:121 __init__ INFO: Run id is: 90ac0c9c-3b7c-4134-a7ca-cc741bbd8919 │ │ │ │ -1750818583.677988 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ -1750818583.678201 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ -1750818583.678341 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/qiime2/sdk/parallel_config.py │ │ │ │ -1750818583.678463 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:134 __init__ DEBUG: Using parallel_config.py as workflow name │ │ │ │ -1750818583.678688 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.memoization:163 __init__ INFO: App caching initialized │ │ │ │ -1750818583.678830 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.jobs.strategy:145 __init__ DEBUG: Scaling strategy: none │ │ │ │ -1750818583.680367 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:994 submit DEBUG: Task 0 will be sent to executor _parsl_internal │ │ │ │ -1750818583.680555 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818583.680703 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1072 submit INFO: Task 0 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818583.680837 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1078 submit DEBUG: Task 0 set to pending state with AppFuture: │ │ │ │ -1750818583.680968 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.memoization:222 check_memo DEBUG: Task 0 will not be memoized │ │ │ │ -1750818583.681808 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 0 try 0 launched on executor _parsl_internal │ │ │ │ -1750818583.682174 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818583.682853 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818583.685186 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:994 submit DEBUG: Task 1 will be sent to executor default │ │ │ │ -1750818583.685365 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818583.685485 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1072 submit INFO: Task 1 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818583.685602 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1078 submit DEBUG: Task 1 set to pending state with AppFuture: │ │ │ │ -1750818583.685710 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.memoization:222 check_memo DEBUG: Task 1 will not be memoized │ │ │ │ -1750818583.686265 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 1 try 0 launched on executor default │ │ │ │ -1750818583.686494 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ -1750818583.686659 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ -1750818583.687396 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:994 submit DEBUG: Task 2 will be sent to executor default │ │ │ │ -1750818583.687629 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818583.687829 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1072 submit INFO: Task 2 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818583.688064 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1078 submit DEBUG: Task 2 set to pending state with AppFuture: │ │ │ │ -1750818583.688233 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.memoization:222 check_memo DEBUG: Task 2 will not be memoized │ │ │ │ -1750818583.688415 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 2 try 0 launched on executor default │ │ │ │ -1750818583.688612 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ -1750818583.688802 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ -1750818583.789115 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:570 _complete_task INFO: Task 1 completed (launched -> exec_done) │ │ │ │ -1750818583.789318 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ -1750818583.789512 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ -1750818583.888428 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:570 _complete_task INFO: Task 2 completed (launched -> exec_done) │ │ │ │ -1750818583.888666 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ -1750818583.889051 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ -1750818584.155660 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:994 submit DEBUG: Task 3 will be sent to executor default │ │ │ │ -1750818584.155897 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818584.156034 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1072 submit INFO: Task 3 submitted for App _create_future, not waiting on any dependency │ │ │ │ -1750818584.156221 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1078 submit DEBUG: Task 3 set to pending state with AppFuture: │ │ │ │ -1750818584.156348 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.memoization:222 check_memo DEBUG: Task 3 will not be memoized │ │ │ │ -1750818584.156496 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 3 try 0 launched on executor default │ │ │ │ -1750818584.156693 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ -1750818584.156792 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ -1750818584.156982 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:570 _complete_task INFO: Task 3 completed (launched -> exec_done) │ │ │ │ -1750818584.157109 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ -1750818584.157207 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ -1750818584.157355 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:453 handle_join_update DEBUG: Join callback for task 0, inner_app_future │ │ │ │ -1750818584.157474 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:570 _complete_task INFO: Task 0 completed (joining -> exec_done) │ │ │ │ -1750818584.157679 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818584.157834 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1220 cleanup INFO: DFK cleanup initiated │ │ │ │ -1750818584.158094 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818584.158334 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1116 log_task_states INFO: Summary of tasks in DFK: │ │ │ │ -1750818584.158574 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818584.158859 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.unsched: 0 │ │ │ │ -1750818584.159101 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818584.159365 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.pending: 0 │ │ │ │ -1750818584.159736 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running: 0 │ │ │ │ -1750818584.159911 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.exec_done: 4 │ │ │ │ -1750818584.160114 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.failed: 0 │ │ │ │ -1750818584.160299 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.dep_fail: 0 │ │ │ │ -1750818584.160470 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.launched: 0 │ │ │ │ -1750818584.160639 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.fail_retryable: 0 │ │ │ │ -1750818584.160813 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.memo_done: 0 │ │ │ │ -1750818584.160978 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.joining: 0 │ │ │ │ -1750818584.161165 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running_ended: 0 │ │ │ │ -1750818584.161338 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1122 log_task_states INFO: End of summary │ │ │ │ -1750818584.161521 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1241 cleanup INFO: Sending end message for usage tracking │ │ │ │ -1750818584.162113 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:172 construct_end_message DEBUG: Usage tracking end message (unencoded): {'correlator': '4175db09-a7d3-473e-9d1a-76704ab06799', 'end': 1750818584, 'components': [{'c': 'parsl.dataflow.dflow.DataFlowKernel', 'app_count': 4, 'app_fails': 0}, {'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ -1750818584.162406 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1244 cleanup INFO: Closed usage tracking │ │ │ │ -1750818584.162593 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1246 cleanup INFO: Closing job status poller │ │ │ │ -1750818584.162879 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1248 cleanup INFO: Terminated job status poller │ │ │ │ -1750818584.163090 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1250 cleanup INFO: Shutting down executors │ │ │ │ -1750818584.163270 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor default │ │ │ │ -1750818584.163444 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818584.163724 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818584.163944 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor default │ │ │ │ -1750818584.164123 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor test │ │ │ │ -1750818584.164286 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818584.164449 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818584.164607 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor test │ │ │ │ -1750818584.164770 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor _parsl_internal │ │ │ │ -1750818584.164944 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818584.165232 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818584.165429 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor _parsl_internal │ │ │ │ -1750818584.165608 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1257 cleanup INFO: Terminated executors │ │ │ │ -1750818584.165774 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1273 cleanup INFO: DFK cleanup complete │ │ │ │ -1750818584.165975 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.process_loggers:28 wrapped DEBUG: Normal ending for cleanup on thread MainThread │ │ │ │ -1750818626.842208 2025-06-24 14:30:26 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ -1750818626.843064 2025-06-24 14:30:26 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ -1750818626.843153 2025-06-24 14:30:26 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ +1716408583.644807 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:93 __init__ INFO: Parsl version: 1.3.0-dev │ │ │ │ +1716408583.645225 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:114 __init__ DEBUG: Tracking status: False │ │ │ │ +1716408583.646095 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:148 construct_start_message DEBUG: Usage tracking start message: {'correlator': '29831aeb-af5a-46a9-aa91-b234ecf9ad6a', 'parsl_v': '1.3.0-dev', 'python_v': '3.11.9', 'platform.system': 'Linux', 'start': 1716408583, 'components': [{'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ +1716408583.646500 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:121 __init__ INFO: Run id is: becdbc88-5af0-4a98-a594-2b6346dab27a │ │ │ │ +1716408583.775770 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ +1716408583.776146 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ +1716408583.776407 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/qiime2/sdk/parallel_config.py │ │ │ │ +1716408583.776664 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:134 __init__ DEBUG: Using parallel_config.py as workflow name │ │ │ │ +1716408583.777127 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.memoization:163 __init__ INFO: App caching initialized │ │ │ │ +1716408583.777424 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.jobs.strategy:145 __init__ DEBUG: Scaling strategy: none │ │ │ │ +1716408583.780066 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:994 submit DEBUG: Task 0 will be sent to executor _parsl_internal │ │ │ │ +1716408583.780433 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408583.780669 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1072 submit INFO: Task 0 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408583.780891 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1078 submit DEBUG: Task 0 set to pending state with AppFuture: │ │ │ │ +1716408583.781106 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.memoization:222 check_memo DEBUG: Task 0 will not be memoized │ │ │ │ +1716408583.782998 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 0 try 0 launched on executor _parsl_internal │ │ │ │ +1716408583.783322 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408583.783550 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408583.795661 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:994 submit DEBUG: Task 1 will be sent to executor default │ │ │ │ +1716408583.796096 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408583.796397 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1072 submit INFO: Task 1 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408583.796715 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1078 submit DEBUG: Task 1 set to pending state with AppFuture: │ │ │ │ +1716408583.797038 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.memoization:222 check_memo DEBUG: Task 1 will not be memoized │ │ │ │ +1716408583.801378 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 1 try 0 launched on executor default │ │ │ │ +1716408583.801828 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ +1716408583.802208 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ +1716408583.803576 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:994 submit DEBUG: Task 2 will be sent to executor default │ │ │ │ +1716408583.803987 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408583.804323 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1072 submit INFO: Task 2 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408583.804670 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1078 submit DEBUG: Task 2 set to pending state with AppFuture: │ │ │ │ +1716408583.805045 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.memoization:222 check_memo DEBUG: Task 2 will not be memoized │ │ │ │ +1716408583.806401 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 2 try 0 launched on executor default │ │ │ │ +1716408583.806731 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ +1716408583.807012 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ +1716408584.019965 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:570 _complete_task INFO: Task 1 completed (launched -> exec_done) │ │ │ │ +1716408584.020396 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ +1716408584.020693 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ +1716408584.256604 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:570 _complete_task INFO: Task 2 completed (launched -> exec_done) │ │ │ │ +1716408584.257063 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ +1716408584.258610 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ +1716408584.877722 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:994 submit DEBUG: Task 3 will be sent to executor test │ │ │ │ +1716408584.878156 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408584.878450 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1072 submit INFO: Task 3 submitted for App _create_future, not waiting on any dependency │ │ │ │ +1716408584.878758 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1078 submit DEBUG: Task 3 set to pending state with AppFuture: │ │ │ │ +1716408584.879053 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.memoization:222 check_memo DEBUG: Task 3 will not be memoized │ │ │ │ +1716408584.879972 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 3 try 0 launched on executor test │ │ │ │ +1716408584.880312 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ +1716408584.880621 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ +1716408584.880977 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:570 _complete_task INFO: Task 3 completed (launched -> exec_done) │ │ │ │ +1716408584.881383 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ +1716408584.881615 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ +1716408584.881974 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:453 handle_join_update DEBUG: Join callback for task 0, inner_app_future │ │ │ │ +1716408584.882293 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:570 _complete_task INFO: Task 0 completed (joining -> exec_done) │ │ │ │ +1716408584.882596 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408584.882858 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408584.883121 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408584.883376 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408584.883746 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1220 cleanup INFO: DFK cleanup initiated │ │ │ │ +1716408584.884056 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1116 log_task_states INFO: Summary of tasks in DFK: │ │ │ │ +1716408584.884367 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.unsched: 0 │ │ │ │ +1716408584.884630 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.pending: 0 │ │ │ │ +1716408584.884900 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running: 0 │ │ │ │ +1716408584.885216 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.exec_done: 4 │ │ │ │ +1716408584.885581 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.failed: 0 │ │ │ │ +1716408584.885871 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.dep_fail: 0 │ │ │ │ +1716408584.886108 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.launched: 0 │ │ │ │ +1716408584.886347 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.fail_retryable: 0 │ │ │ │ +1716408584.886579 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.memo_done: 0 │ │ │ │ +1716408584.886817 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.joining: 0 │ │ │ │ +1716408584.887059 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running_ended: 0 │ │ │ │ +1716408584.887294 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1122 log_task_states INFO: End of summary │ │ │ │ +1716408584.887534 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1241 cleanup INFO: Sending end message for usage tracking │ │ │ │ +1716408584.888336 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:172 construct_end_message DEBUG: Usage tracking end message (unencoded): {'correlator': '29831aeb-af5a-46a9-aa91-b234ecf9ad6a', 'end': 1716408584, 'components': [{'c': 'parsl.dataflow.dflow.DataFlowKernel', 'app_count': 4, 'app_fails': 0}, {'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ +1716408584.888692 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1244 cleanup INFO: Closed usage tracking │ │ │ │ +1716408584.888966 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1246 cleanup INFO: Closing job status poller │ │ │ │ +1716408584.894539 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1248 cleanup INFO: Terminated job status poller │ │ │ │ +1716408584.894895 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1250 cleanup INFO: Shutting down executors │ │ │ │ +1716408584.895144 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor default │ │ │ │ +1716408584.895398 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408584.895808 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408584.896063 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor default │ │ │ │ +1716408584.896314 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor test │ │ │ │ +1716408584.896557 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408584.897015 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408584.897360 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor test │ │ │ │ +1716408584.897616 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor _parsl_internal │ │ │ │ +1716408584.897899 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408584.898340 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408584.898816 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor _parsl_internal │ │ │ │ +1716408584.899101 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1257 cleanup INFO: Terminated executors │ │ │ │ +1716408584.899390 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1273 cleanup INFO: DFK cleanup complete │ │ │ │ +1716408584.899634 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.process_loggers:28 wrapped DEBUG: Normal ending for cleanup on thread MainThread │ │ │ │ +1716408686.361664 2024-05-23 10:11:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ +1716408686.361910 2024-05-23 10:11:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ +1716408686.362047 2024-05-23 10:11:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ ├── ./usr/lib/python3/dist-packages/runinfo/001/parsl.log │ │ │ │ @@ -1,8 +1,8 @@ │ │ │ │ -1750818579.571566 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:91 __init__ INFO: Starting DataFlowKernel with config │ │ │ │ +1716408572.394170 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:91 __init__ INFO: Starting DataFlowKernel with config │ │ │ │ Config( │ │ │ │ app_cache=True, │ │ │ │ checkpoint_files=None, │ │ │ │ checkpoint_mode=None, │ │ │ │ checkpoint_period=None, │ │ │ │ executors=(ThreadPoolExecutor( │ │ │ │ label='default', │ │ │ │ @@ -20,108 +20,108 @@ │ │ │ │ retry_handler=None, │ │ │ │ run_dir='runinfo', │ │ │ │ std_autopath=None, │ │ │ │ strategy='none', │ │ │ │ strategy_period=5, │ │ │ │ usage_tracking=False │ │ │ │ ) │ │ │ │ -1750818579.571749 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:93 __init__ INFO: Parsl version: 1.3.0-dev │ │ │ │ -1750818579.571888 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:114 __init__ DEBUG: Tracking status: False │ │ │ │ -1750818579.572185 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:148 construct_start_message DEBUG: Usage tracking start message: {'correlator': '1d178cfe-c9fa-4906-8b2f-b8fbf41c77b9', 'parsl_v': '1.3.0-dev', 'python_v': '3.11.9', 'platform.system': 'Linux', 'start': 1750818579, 'components': [{'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ -1750818579.572348 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:121 __init__ INFO: Run id is: 800de42e-28ab-40ab-a94a-e89c5ec3a496 │ │ │ │ -1750818579.582104 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ -1750818579.582234 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ -1750818579.582324 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/qiime2/sdk/parallel_config.py │ │ │ │ -1750818579.582407 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:134 __init__ DEBUG: Using parallel_config.py as workflow name │ │ │ │ -1750818579.582575 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.memoization:163 __init__ INFO: App caching initialized │ │ │ │ -1750818579.582683 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.jobs.strategy:145 __init__ DEBUG: Scaling strategy: none │ │ │ │ -1750818579.584059 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:994 submit DEBUG: Task 0 will be sent to executor _parsl_internal │ │ │ │ -1750818579.584216 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818579.584330 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1072 submit INFO: Task 0 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818579.584431 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1078 submit DEBUG: Task 0 set to pending state with AppFuture: │ │ │ │ -1750818579.584529 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.memoization:222 check_memo DEBUG: Task 0 will not be memoized │ │ │ │ -1750818579.585301 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 0 try 0 launched on executor _parsl_internal │ │ │ │ -1750818579.585431 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818579.585633 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818579.588473 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:994 submit DEBUG: Task 1 will be sent to executor test │ │ │ │ -1750818579.588639 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818579.588746 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1072 submit INFO: Task 1 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818579.588846 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1078 submit DEBUG: Task 1 set to pending state with AppFuture: │ │ │ │ -1750818579.588947 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.memoization:222 check_memo DEBUG: Task 1 will not be memoized │ │ │ │ -1750818579.589489 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 1 try 0 launched on executor test │ │ │ │ -1750818579.589622 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ -1750818579.589796 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ -1750818579.590427 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:994 submit DEBUG: Task 2 will be sent to executor default │ │ │ │ -1750818579.590901 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818579.591039 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1072 submit INFO: Task 2 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818579.591174 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1078 submit DEBUG: Task 2 set to pending state with AppFuture: │ │ │ │ -1750818579.591337 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.memoization:222 check_memo DEBUG: Task 2 will not be memoized │ │ │ │ -1750818579.591923 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 2 try 0 launched on executor default │ │ │ │ -1750818579.592172 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ -1750818579.592278 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ -1750818579.733158 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-3_0-4038650688 parsl.dataflow.dflow:570 _complete_task INFO: Task 2 completed (launched -> exec_done) │ │ │ │ -1750818579.733422 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-3_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ -1750818579.733532 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-3_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ -1750818579.735686 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-4_0-4007656256 parsl.dataflow.dflow:570 _complete_task INFO: Task 1 completed (launched -> exec_done) │ │ │ │ -1750818579.735847 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-4_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ -1750818579.735959 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-4_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ -1750818579.953963 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:994 submit DEBUG: Task 3 will be sent to executor test │ │ │ │ -1750818579.954152 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818579.954258 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1072 submit INFO: Task 3 submitted for App _create_future, not waiting on any dependency │ │ │ │ -1750818579.954363 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1078 submit DEBUG: Task 3 set to pending state with AppFuture: │ │ │ │ -1750818579.954466 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.memoization:222 check_memo DEBUG: Task 3 will not be memoized │ │ │ │ -1750818579.954593 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 3 try 0 launched on executor test │ │ │ │ -1750818579.954702 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ -1750818579.954876 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ -1750818579.954986 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:570 _complete_task INFO: Task 3 completed (launched -> exec_done) │ │ │ │ -1750818579.955087 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ -1750818579.955167 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ -1750818579.955290 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:453 handle_join_update DEBUG: Join callback for task 0, inner_app_future │ │ │ │ -1750818579.955389 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:570 _complete_task INFO: Task 0 completed (joining -> exec_done) │ │ │ │ -1750818579.955496 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818579.955596 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818579.955708 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1220 cleanup INFO: DFK cleanup initiated │ │ │ │ -1750818579.955834 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818579.955980 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1116 log_task_states INFO: Summary of tasks in DFK: │ │ │ │ -1750818579.956130 2025-06-24 14:29:39 MainProcess-128551 ThreadPoolExecutor-5_0-4018142016 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818579.956275 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.unsched: 0 │ │ │ │ -1750818579.956478 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.pending: 0 │ │ │ │ -1750818579.956562 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running: 0 │ │ │ │ -1750818579.956641 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.exec_done: 4 │ │ │ │ -1750818579.956730 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.failed: 0 │ │ │ │ -1750818579.956810 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.dep_fail: 0 │ │ │ │ -1750818579.956887 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.launched: 0 │ │ │ │ -1750818579.956964 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.fail_retryable: 0 │ │ │ │ -1750818579.957043 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.memo_done: 0 │ │ │ │ -1750818579.957123 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.joining: 0 │ │ │ │ -1750818579.957201 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running_ended: 0 │ │ │ │ -1750818579.957276 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1122 log_task_states INFO: End of summary │ │ │ │ -1750818579.957351 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1241 cleanup INFO: Sending end message for usage tracking │ │ │ │ -1750818579.957682 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:172 construct_end_message DEBUG: Usage tracking end message (unencoded): {'correlator': '1d178cfe-c9fa-4906-8b2f-b8fbf41c77b9', 'end': 1750818579, 'components': [{'c': 'parsl.dataflow.dflow.DataFlowKernel', 'app_count': 4, 'app_fails': 0}, {'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ -1750818579.957824 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1244 cleanup INFO: Closed usage tracking │ │ │ │ -1750818579.957944 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1246 cleanup INFO: Closing job status poller │ │ │ │ -1750818579.958121 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1248 cleanup INFO: Terminated job status poller │ │ │ │ -1750818579.958230 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1250 cleanup INFO: Shutting down executors │ │ │ │ -1750818579.958310 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor default │ │ │ │ -1750818579.958392 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818579.958557 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818579.958666 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor default │ │ │ │ -1750818579.958743 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor test │ │ │ │ -1750818579.958815 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818579.958972 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818579.959069 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor test │ │ │ │ -1750818579.959144 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor _parsl_internal │ │ │ │ -1750818579.959218 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818579.959381 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818579.959480 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor _parsl_internal │ │ │ │ -1750818579.959557 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1257 cleanup INFO: Terminated executors │ │ │ │ -1750818579.959633 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1273 cleanup INFO: DFK cleanup complete │ │ │ │ -1750818579.959726 2025-06-24 14:29:39 MainProcess-128551 MainThread-4156798720 parsl.process_loggers:28 wrapped DEBUG: Normal ending for cleanup on thread MainThread │ │ │ │ -1750818583.623291 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.rundirs:35 make_rundir DEBUG: Parsl run initializing in rundir: runinfo/002 │ │ │ │ -1750818583.624105 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:91 __init__ INFO: Starting DataFlowKernel with config │ │ │ │ +1716408572.394439 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:93 __init__ INFO: Parsl version: 1.3.0-dev │ │ │ │ +1716408572.394684 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:114 __init__ DEBUG: Tracking status: False │ │ │ │ +1716408572.395285 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:148 construct_start_message DEBUG: Usage tracking start message: {'correlator': 'c395c084-5e11-4135-b179-eef1f8c105be', 'parsl_v': '1.3.0-dev', 'python_v': '3.11.9', 'platform.system': 'Linux', 'start': 1716408572, 'components': [{'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ +1716408572.395622 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:121 __init__ INFO: Run id is: b3fc7b0c-6388-411a-aa71-860659893906 │ │ │ │ +1716408572.414355 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ +1716408572.414653 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ +1716408572.414822 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/qiime2/sdk/parallel_config.py │ │ │ │ +1716408572.414989 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:134 __init__ DEBUG: Using parallel_config.py as workflow name │ │ │ │ +1716408572.415312 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.memoization:163 __init__ INFO: App caching initialized │ │ │ │ +1716408572.415550 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.jobs.strategy:145 __init__ DEBUG: Scaling strategy: none │ │ │ │ +1716408572.420032 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:994 submit DEBUG: Task 0 will be sent to executor _parsl_internal │ │ │ │ +1716408572.420295 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408572.420490 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1072 submit INFO: Task 0 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408572.420680 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1078 submit DEBUG: Task 0 set to pending state with AppFuture: │ │ │ │ +1716408572.420870 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.memoization:222 check_memo DEBUG: Task 0 will not be memoized │ │ │ │ +1716408572.422529 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 0 try 0 launched on executor _parsl_internal │ │ │ │ +1716408572.422802 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408572.423003 2024-05-23 10:09:32 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408572.428554 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:994 submit DEBUG: Task 1 will be sent to executor test │ │ │ │ +1716408572.428849 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408572.429031 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1072 submit INFO: Task 1 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408572.429358 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1078 submit DEBUG: Task 1 set to pending state with AppFuture: │ │ │ │ +1716408572.429597 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.memoization:222 check_memo DEBUG: Task 1 will not be memoized │ │ │ │ +1716408572.430851 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 1 try 0 launched on executor test │ │ │ │ +1716408572.431148 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ +1716408572.431333 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ +1716408572.432337 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:994 submit DEBUG: Task 2 will be sent to executor default │ │ │ │ +1716408572.432944 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408572.433245 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1072 submit INFO: Task 2 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408572.433527 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1078 submit DEBUG: Task 2 set to pending state with AppFuture: │ │ │ │ +1716408572.433787 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.memoization:222 check_memo DEBUG: Task 2 will not be memoized │ │ │ │ +1716408572.435434 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 2 try 0 launched on executor default │ │ │ │ +1716408572.435747 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ +1716408572.435966 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ +1716408572.765580 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:570 _complete_task INFO: Task 2 completed (launched -> exec_done) │ │ │ │ +1716408572.765959 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ +1716408572.766174 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ +1716408572.767920 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-4_0-4005559104 parsl.dataflow.dflow:570 _complete_task INFO: Task 1 completed (launched -> exec_done) │ │ │ │ +1716408572.768204 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-4_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ +1716408572.768367 2024-05-23 10:09:32 MainProcess-34166 ThreadPoolExecutor-4_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ +1716408573.292052 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:994 submit DEBUG: Task 3 will be sent to executor default │ │ │ │ +1716408573.292428 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408573.292657 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1072 submit INFO: Task 3 submitted for App _create_future, not waiting on any dependency │ │ │ │ +1716408573.292900 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1078 submit DEBUG: Task 3 set to pending state with AppFuture: │ │ │ │ +1716408573.293120 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.memoization:222 check_memo DEBUG: Task 3 will not be memoized │ │ │ │ +1716408573.293821 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 3 try 0 launched on executor default │ │ │ │ +1716408573.294046 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ +1716408573.294327 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ +1716408573.294704 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408573.294962 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-5_0-4016044864 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408573.295647 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:570 _complete_task INFO: Task 3 completed (launched -> exec_done) │ │ │ │ +1716408573.296011 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:453 handle_join_update DEBUG: Join callback for task 0, inner_app_future │ │ │ │ +1716408573.296310 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:570 _complete_task INFO: Task 0 completed (joining -> exec_done) │ │ │ │ +1716408573.296580 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408573.296841 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408573.297096 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ +1716408573.297326 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1220 cleanup INFO: DFK cleanup initiated │ │ │ │ +1716408573.297728 2024-05-23 10:09:33 MainProcess-34166 ThreadPoolExecutor-3_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ +1716408573.298062 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1116 log_task_states INFO: Summary of tasks in DFK: │ │ │ │ +1716408573.298585 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.unsched: 0 │ │ │ │ +1716408573.298837 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.pending: 0 │ │ │ │ +1716408573.299075 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running: 0 │ │ │ │ +1716408573.299323 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.exec_done: 4 │ │ │ │ +1716408573.299603 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.failed: 0 │ │ │ │ +1716408573.299854 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.dep_fail: 0 │ │ │ │ +1716408573.300100 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.launched: 0 │ │ │ │ +1716408573.300341 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.fail_retryable: 0 │ │ │ │ +1716408573.300588 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.memo_done: 0 │ │ │ │ +1716408573.300833 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.joining: 0 │ │ │ │ +1716408573.301041 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running_ended: 0 │ │ │ │ +1716408573.301292 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1122 log_task_states INFO: End of summary │ │ │ │ +1716408573.301475 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1241 cleanup INFO: Sending end message for usage tracking │ │ │ │ +1716408573.302166 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:172 construct_end_message DEBUG: Usage tracking end message (unencoded): {'correlator': 'c395c084-5e11-4135-b179-eef1f8c105be', 'end': 1716408573, 'components': [{'c': 'parsl.dataflow.dflow.DataFlowKernel', 'app_count': 4, 'app_fails': 0}, {'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ +1716408573.302436 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1244 cleanup INFO: Closed usage tracking │ │ │ │ +1716408573.302634 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1246 cleanup INFO: Closing job status poller │ │ │ │ +1716408573.309106 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1248 cleanup INFO: Terminated job status poller │ │ │ │ +1716408573.309524 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1250 cleanup INFO: Shutting down executors │ │ │ │ +1716408573.309791 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor default │ │ │ │ +1716408573.310057 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408573.310479 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408573.310722 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor default │ │ │ │ +1716408573.310968 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor test │ │ │ │ +1716408573.311191 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408573.311601 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408573.311847 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor test │ │ │ │ +1716408573.312067 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor _parsl_internal │ │ │ │ +1716408573.312312 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408573.317401 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408573.317738 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor _parsl_internal │ │ │ │ +1716408573.317988 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1257 cleanup INFO: Terminated executors │ │ │ │ +1716408573.318249 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1273 cleanup INFO: DFK cleanup complete │ │ │ │ +1716408573.318528 2024-05-23 10:09:33 MainProcess-34166 MainThread-4160296704 parsl.process_loggers:28 wrapped DEBUG: Normal ending for cleanup on thread MainThread │ │ │ │ +1716408583.641929 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.rundirs:35 make_rundir DEBUG: Parsl run initializing in rundir: runinfo/002 │ │ │ │ +1716408583.644244 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:91 __init__ INFO: Starting DataFlowKernel with config │ │ │ │ Config( │ │ │ │ app_cache=True, │ │ │ │ checkpoint_files=None, │ │ │ │ checkpoint_mode=None, │ │ │ │ checkpoint_period=None, │ │ │ │ executors=(ThreadPoolExecutor( │ │ │ │ label='default', │ │ │ │ @@ -139,102 +139,102 @@ │ │ │ │ retry_handler=None, │ │ │ │ run_dir='runinfo', │ │ │ │ std_autopath=None, │ │ │ │ strategy='none', │ │ │ │ strategy_period=5, │ │ │ │ usage_tracking=False │ │ │ │ ) │ │ │ │ -1750818583.624325 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:93 __init__ INFO: Parsl version: 1.3.0-dev │ │ │ │ -1750818583.624495 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:114 __init__ DEBUG: Tracking status: False │ │ │ │ -1750818583.624824 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:148 construct_start_message DEBUG: Usage tracking start message: {'correlator': '4175db09-a7d3-473e-9d1a-76704ab06799', 'parsl_v': '1.3.0-dev', 'python_v': '3.11.9', 'platform.system': 'Linux', 'start': 1750818583, 'components': [{'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ -1750818583.625027 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:121 __init__ INFO: Run id is: 90ac0c9c-3b7c-4134-a7ca-cc741bbd8919 │ │ │ │ -1750818583.677988 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ -1750818583.678201 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ -1750818583.678341 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/qiime2/sdk/parallel_config.py │ │ │ │ -1750818583.678463 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:134 __init__ DEBUG: Using parallel_config.py as workflow name │ │ │ │ -1750818583.678688 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.memoization:163 __init__ INFO: App caching initialized │ │ │ │ -1750818583.678830 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.jobs.strategy:145 __init__ DEBUG: Scaling strategy: none │ │ │ │ -1750818583.680367 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:994 submit DEBUG: Task 0 will be sent to executor _parsl_internal │ │ │ │ -1750818583.680555 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818583.680703 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1072 submit INFO: Task 0 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818583.680837 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1078 submit DEBUG: Task 0 set to pending state with AppFuture: │ │ │ │ -1750818583.680968 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.memoization:222 check_memo DEBUG: Task 0 will not be memoized │ │ │ │ -1750818583.681808 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 0 try 0 launched on executor _parsl_internal │ │ │ │ -1750818583.682174 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818583.682853 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818583.685186 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:994 submit DEBUG: Task 1 will be sent to executor default │ │ │ │ -1750818583.685365 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818583.685485 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1072 submit INFO: Task 1 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818583.685602 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1078 submit DEBUG: Task 1 set to pending state with AppFuture: │ │ │ │ -1750818583.685710 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.memoization:222 check_memo DEBUG: Task 1 will not be memoized │ │ │ │ -1750818583.686265 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 1 try 0 launched on executor default │ │ │ │ -1750818583.686494 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ -1750818583.686659 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ -1750818583.687396 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:994 submit DEBUG: Task 2 will be sent to executor default │ │ │ │ -1750818583.687629 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818583.687829 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1072 submit INFO: Task 2 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818583.688064 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1078 submit DEBUG: Task 2 set to pending state with AppFuture: │ │ │ │ -1750818583.688233 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.memoization:222 check_memo DEBUG: Task 2 will not be memoized │ │ │ │ -1750818583.688415 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 2 try 0 launched on executor default │ │ │ │ -1750818583.688612 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ -1750818583.688802 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ -1750818583.789115 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:570 _complete_task INFO: Task 1 completed (launched -> exec_done) │ │ │ │ -1750818583.789318 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ -1750818583.789512 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ -1750818583.888428 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:570 _complete_task INFO: Task 2 completed (launched -> exec_done) │ │ │ │ -1750818583.888666 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ -1750818583.889051 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ -1750818584.155660 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:994 submit DEBUG: Task 3 will be sent to executor default │ │ │ │ -1750818584.155897 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818584.156034 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1072 submit INFO: Task 3 submitted for App _create_future, not waiting on any dependency │ │ │ │ -1750818584.156221 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1078 submit DEBUG: Task 3 set to pending state with AppFuture: │ │ │ │ -1750818584.156348 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.memoization:222 check_memo DEBUG: Task 3 will not be memoized │ │ │ │ -1750818584.156496 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 3 try 0 launched on executor default │ │ │ │ -1750818584.156693 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ -1750818584.156792 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ -1750818584.156982 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:570 _complete_task INFO: Task 3 completed (launched -> exec_done) │ │ │ │ -1750818584.157109 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ -1750818584.157207 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ -1750818584.157355 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:453 handle_join_update DEBUG: Join callback for task 0, inner_app_future │ │ │ │ -1750818584.157474 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:570 _complete_task INFO: Task 0 completed (joining -> exec_done) │ │ │ │ -1750818584.157679 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818584.157834 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1220 cleanup INFO: DFK cleanup initiated │ │ │ │ -1750818584.158094 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818584.158334 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1116 log_task_states INFO: Summary of tasks in DFK: │ │ │ │ -1750818584.158574 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818584.158859 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.unsched: 0 │ │ │ │ -1750818584.159101 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818584.159365 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.pending: 0 │ │ │ │ -1750818584.159736 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running: 0 │ │ │ │ -1750818584.159911 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.exec_done: 4 │ │ │ │ -1750818584.160114 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.failed: 0 │ │ │ │ -1750818584.160299 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.dep_fail: 0 │ │ │ │ -1750818584.160470 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.launched: 0 │ │ │ │ -1750818584.160639 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.fail_retryable: 0 │ │ │ │ -1750818584.160813 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.memo_done: 0 │ │ │ │ -1750818584.160978 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.joining: 0 │ │ │ │ -1750818584.161165 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running_ended: 0 │ │ │ │ -1750818584.161338 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1122 log_task_states INFO: End of summary │ │ │ │ -1750818584.161521 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1241 cleanup INFO: Sending end message for usage tracking │ │ │ │ -1750818584.162113 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:172 construct_end_message DEBUG: Usage tracking end message (unencoded): {'correlator': '4175db09-a7d3-473e-9d1a-76704ab06799', 'end': 1750818584, 'components': [{'c': 'parsl.dataflow.dflow.DataFlowKernel', 'app_count': 4, 'app_fails': 0}, {'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ -1750818584.162406 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1244 cleanup INFO: Closed usage tracking │ │ │ │ -1750818584.162593 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1246 cleanup INFO: Closing job status poller │ │ │ │ -1750818584.162879 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1248 cleanup INFO: Terminated job status poller │ │ │ │ -1750818584.163090 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1250 cleanup INFO: Shutting down executors │ │ │ │ -1750818584.163270 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor default │ │ │ │ -1750818584.163444 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818584.163724 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818584.163944 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor default │ │ │ │ -1750818584.164123 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor test │ │ │ │ -1750818584.164286 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818584.164449 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818584.164607 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor test │ │ │ │ -1750818584.164770 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor _parsl_internal │ │ │ │ -1750818584.164944 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818584.165232 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818584.165429 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor _parsl_internal │ │ │ │ -1750818584.165608 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1257 cleanup INFO: Terminated executors │ │ │ │ -1750818584.165774 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1273 cleanup INFO: DFK cleanup complete │ │ │ │ -1750818584.165975 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.process_loggers:28 wrapped DEBUG: Normal ending for cleanup on thread MainThread │ │ │ │ -1750818626.842208 2025-06-24 14:30:26 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ -1750818626.843064 2025-06-24 14:30:26 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ -1750818626.843153 2025-06-24 14:30:26 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ +1716408583.644807 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:93 __init__ INFO: Parsl version: 1.3.0-dev │ │ │ │ +1716408583.645225 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:114 __init__ DEBUG: Tracking status: False │ │ │ │ +1716408583.646095 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:148 construct_start_message DEBUG: Usage tracking start message: {'correlator': '29831aeb-af5a-46a9-aa91-b234ecf9ad6a', 'parsl_v': '1.3.0-dev', 'python_v': '3.11.9', 'platform.system': 'Linux', 'start': 1716408583, 'components': [{'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ +1716408583.646500 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:121 __init__ INFO: Run id is: becdbc88-5af0-4a98-a594-2b6346dab27a │ │ │ │ +1716408583.775770 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ +1716408583.776146 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ +1716408583.776407 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/qiime2/sdk/parallel_config.py │ │ │ │ +1716408583.776664 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:134 __init__ DEBUG: Using parallel_config.py as workflow name │ │ │ │ +1716408583.777127 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.memoization:163 __init__ INFO: App caching initialized │ │ │ │ +1716408583.777424 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.jobs.strategy:145 __init__ DEBUG: Scaling strategy: none │ │ │ │ +1716408583.780066 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:994 submit DEBUG: Task 0 will be sent to executor _parsl_internal │ │ │ │ +1716408583.780433 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408583.780669 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1072 submit INFO: Task 0 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408583.780891 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1078 submit DEBUG: Task 0 set to pending state with AppFuture: │ │ │ │ +1716408583.781106 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.memoization:222 check_memo DEBUG: Task 0 will not be memoized │ │ │ │ +1716408583.782998 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 0 try 0 launched on executor _parsl_internal │ │ │ │ +1716408583.783322 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408583.783550 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408583.795661 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:994 submit DEBUG: Task 1 will be sent to executor default │ │ │ │ +1716408583.796096 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408583.796397 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1072 submit INFO: Task 1 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408583.796715 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1078 submit DEBUG: Task 1 set to pending state with AppFuture: │ │ │ │ +1716408583.797038 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.memoization:222 check_memo DEBUG: Task 1 will not be memoized │ │ │ │ +1716408583.801378 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 1 try 0 launched on executor default │ │ │ │ +1716408583.801828 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ +1716408583.802208 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ +1716408583.803576 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:994 submit DEBUG: Task 2 will be sent to executor default │ │ │ │ +1716408583.803987 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408583.804323 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1072 submit INFO: Task 2 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408583.804670 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1078 submit DEBUG: Task 2 set to pending state with AppFuture: │ │ │ │ +1716408583.805045 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.memoization:222 check_memo DEBUG: Task 2 will not be memoized │ │ │ │ +1716408583.806401 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 2 try 0 launched on executor default │ │ │ │ +1716408583.806731 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ +1716408583.807012 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ +1716408584.019965 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:570 _complete_task INFO: Task 1 completed (launched -> exec_done) │ │ │ │ +1716408584.020396 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ +1716408584.020693 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ +1716408584.256604 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:570 _complete_task INFO: Task 2 completed (launched -> exec_done) │ │ │ │ +1716408584.257063 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ +1716408584.258610 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ +1716408584.877722 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:994 submit DEBUG: Task 3 will be sent to executor test │ │ │ │ +1716408584.878156 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408584.878450 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1072 submit INFO: Task 3 submitted for App _create_future, not waiting on any dependency │ │ │ │ +1716408584.878758 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1078 submit DEBUG: Task 3 set to pending state with AppFuture: │ │ │ │ +1716408584.879053 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.memoization:222 check_memo DEBUG: Task 3 will not be memoized │ │ │ │ +1716408584.879972 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 3 try 0 launched on executor test │ │ │ │ +1716408584.880312 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ +1716408584.880621 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ +1716408584.880977 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:570 _complete_task INFO: Task 3 completed (launched -> exec_done) │ │ │ │ +1716408584.881383 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ +1716408584.881615 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ +1716408584.881974 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:453 handle_join_update DEBUG: Join callback for task 0, inner_app_future │ │ │ │ +1716408584.882293 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:570 _complete_task INFO: Task 0 completed (joining -> exec_done) │ │ │ │ +1716408584.882596 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408584.882858 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408584.883121 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408584.883376 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408584.883746 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1220 cleanup INFO: DFK cleanup initiated │ │ │ │ +1716408584.884056 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1116 log_task_states INFO: Summary of tasks in DFK: │ │ │ │ +1716408584.884367 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.unsched: 0 │ │ │ │ +1716408584.884630 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.pending: 0 │ │ │ │ +1716408584.884900 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running: 0 │ │ │ │ +1716408584.885216 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.exec_done: 4 │ │ │ │ +1716408584.885581 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.failed: 0 │ │ │ │ +1716408584.885871 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.dep_fail: 0 │ │ │ │ +1716408584.886108 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.launched: 0 │ │ │ │ +1716408584.886347 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.fail_retryable: 0 │ │ │ │ +1716408584.886579 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.memo_done: 0 │ │ │ │ +1716408584.886817 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.joining: 0 │ │ │ │ +1716408584.887059 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running_ended: 0 │ │ │ │ +1716408584.887294 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1122 log_task_states INFO: End of summary │ │ │ │ +1716408584.887534 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1241 cleanup INFO: Sending end message for usage tracking │ │ │ │ +1716408584.888336 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:172 construct_end_message DEBUG: Usage tracking end message (unencoded): {'correlator': '29831aeb-af5a-46a9-aa91-b234ecf9ad6a', 'end': 1716408584, 'components': [{'c': 'parsl.dataflow.dflow.DataFlowKernel', 'app_count': 4, 'app_fails': 0}, {'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ +1716408584.888692 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1244 cleanup INFO: Closed usage tracking │ │ │ │ +1716408584.888966 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1246 cleanup INFO: Closing job status poller │ │ │ │ +1716408584.894539 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1248 cleanup INFO: Terminated job status poller │ │ │ │ +1716408584.894895 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1250 cleanup INFO: Shutting down executors │ │ │ │ +1716408584.895144 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor default │ │ │ │ +1716408584.895398 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408584.895808 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408584.896063 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor default │ │ │ │ +1716408584.896314 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor test │ │ │ │ +1716408584.896557 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408584.897015 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408584.897360 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor test │ │ │ │ +1716408584.897616 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor _parsl_internal │ │ │ │ +1716408584.897899 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408584.898340 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408584.898816 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor _parsl_internal │ │ │ │ +1716408584.899101 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1257 cleanup INFO: Terminated executors │ │ │ │ +1716408584.899390 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1273 cleanup INFO: DFK cleanup complete │ │ │ │ +1716408584.899634 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.process_loggers:28 wrapped DEBUG: Normal ending for cleanup on thread MainThread │ │ │ │ +1716408686.361664 2024-05-23 10:11:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ +1716408686.361910 2024-05-23 10:11:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ +1716408686.362047 2024-05-23 10:11:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ ├── ./usr/lib/python3/dist-packages/runinfo/002/parsl.log │ │ │ │ @@ -1,8 +1,8 @@ │ │ │ │ -1750818583.624105 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:91 __init__ INFO: Starting DataFlowKernel with config │ │ │ │ +1716408583.644244 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:91 __init__ INFO: Starting DataFlowKernel with config │ │ │ │ Config( │ │ │ │ app_cache=True, │ │ │ │ checkpoint_files=None, │ │ │ │ checkpoint_mode=None, │ │ │ │ checkpoint_period=None, │ │ │ │ executors=(ThreadPoolExecutor( │ │ │ │ label='default', │ │ │ │ @@ -20,102 +20,102 @@ │ │ │ │ retry_handler=None, │ │ │ │ run_dir='runinfo', │ │ │ │ std_autopath=None, │ │ │ │ strategy='none', │ │ │ │ strategy_period=5, │ │ │ │ usage_tracking=False │ │ │ │ ) │ │ │ │ -1750818583.624325 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:93 __init__ INFO: Parsl version: 1.3.0-dev │ │ │ │ -1750818583.624495 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:114 __init__ DEBUG: Tracking status: False │ │ │ │ -1750818583.624824 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:148 construct_start_message DEBUG: Usage tracking start message: {'correlator': '4175db09-a7d3-473e-9d1a-76704ab06799', 'parsl_v': '1.3.0-dev', 'python_v': '3.11.9', 'platform.system': 'Linux', 'start': 1750818583, 'components': [{'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ -1750818583.625027 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:121 __init__ INFO: Run id is: 90ac0c9c-3b7c-4134-a7ca-cc741bbd8919 │ │ │ │ -1750818583.677988 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ -1750818583.678201 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ -1750818583.678341 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/qiime2/sdk/parallel_config.py │ │ │ │ -1750818583.678463 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:134 __init__ DEBUG: Using parallel_config.py as workflow name │ │ │ │ -1750818583.678688 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.memoization:163 __init__ INFO: App caching initialized │ │ │ │ -1750818583.678830 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.jobs.strategy:145 __init__ DEBUG: Scaling strategy: none │ │ │ │ -1750818583.680367 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:994 submit DEBUG: Task 0 will be sent to executor _parsl_internal │ │ │ │ -1750818583.680555 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818583.680703 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1072 submit INFO: Task 0 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818583.680837 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1078 submit DEBUG: Task 0 set to pending state with AppFuture: │ │ │ │ -1750818583.680968 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.memoization:222 check_memo DEBUG: Task 0 will not be memoized │ │ │ │ -1750818583.681808 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 0 try 0 launched on executor _parsl_internal │ │ │ │ -1750818583.682174 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818583.682853 2025-06-24 14:29:43 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818583.685186 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:994 submit DEBUG: Task 1 will be sent to executor default │ │ │ │ -1750818583.685365 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818583.685485 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1072 submit INFO: Task 1 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818583.685602 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1078 submit DEBUG: Task 1 set to pending state with AppFuture: │ │ │ │ -1750818583.685710 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.memoization:222 check_memo DEBUG: Task 1 will not be memoized │ │ │ │ -1750818583.686265 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 1 try 0 launched on executor default │ │ │ │ -1750818583.686494 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ -1750818583.686659 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ -1750818583.687396 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:994 submit DEBUG: Task 2 will be sent to executor default │ │ │ │ -1750818583.687629 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818583.687829 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1072 submit INFO: Task 2 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ -1750818583.688064 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1078 submit DEBUG: Task 2 set to pending state with AppFuture: │ │ │ │ -1750818583.688233 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.memoization:222 check_memo DEBUG: Task 2 will not be memoized │ │ │ │ -1750818583.688415 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 2 try 0 launched on executor default │ │ │ │ -1750818583.688612 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ -1750818583.688802 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ -1750818583.789115 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:570 _complete_task INFO: Task 1 completed (launched -> exec_done) │ │ │ │ -1750818583.789318 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ -1750818583.789512 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ -1750818583.888428 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:570 _complete_task INFO: Task 2 completed (launched -> exec_done) │ │ │ │ -1750818583.888666 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ -1750818583.889051 2025-06-24 14:29:43 MainProcess-128551 ThreadPoolExecutor-6_0-4038650688 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ -1750818584.155660 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:994 submit DEBUG: Task 3 will be sent to executor default │ │ │ │ -1750818584.155897 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ -1750818584.156034 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1072 submit INFO: Task 3 submitted for App _create_future, not waiting on any dependency │ │ │ │ -1750818584.156221 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1078 submit DEBUG: Task 3 set to pending state with AppFuture: │ │ │ │ -1750818584.156348 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.memoization:222 check_memo DEBUG: Task 3 will not be memoized │ │ │ │ -1750818584.156496 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 3 try 0 launched on executor default │ │ │ │ -1750818584.156693 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ -1750818584.156792 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ -1750818584.156982 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:570 _complete_task INFO: Task 3 completed (launched -> exec_done) │ │ │ │ -1750818584.157109 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ -1750818584.157207 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ -1750818584.157355 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:453 handle_join_update DEBUG: Join callback for task 0, inner_app_future │ │ │ │ -1750818584.157474 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:570 _complete_task INFO: Task 0 completed (joining -> exec_done) │ │ │ │ -1750818584.157679 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818584.157834 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1220 cleanup INFO: DFK cleanup initiated │ │ │ │ -1750818584.158094 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818584.158334 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1116 log_task_states INFO: Summary of tasks in DFK: │ │ │ │ -1750818584.158574 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ -1750818584.158859 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.unsched: 0 │ │ │ │ -1750818584.159101 2025-06-24 14:29:44 MainProcess-128551 ThreadPoolExecutor-8_0-4007656256 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ -1750818584.159365 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.pending: 0 │ │ │ │ -1750818584.159736 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running: 0 │ │ │ │ -1750818584.159911 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.exec_done: 4 │ │ │ │ -1750818584.160114 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.failed: 0 │ │ │ │ -1750818584.160299 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.dep_fail: 0 │ │ │ │ -1750818584.160470 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.launched: 0 │ │ │ │ -1750818584.160639 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.fail_retryable: 0 │ │ │ │ -1750818584.160813 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.memo_done: 0 │ │ │ │ -1750818584.160978 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.joining: 0 │ │ │ │ -1750818584.161165 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running_ended: 0 │ │ │ │ -1750818584.161338 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1122 log_task_states INFO: End of summary │ │ │ │ -1750818584.161521 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1241 cleanup INFO: Sending end message for usage tracking │ │ │ │ -1750818584.162113 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.usage_tracking.usage:172 construct_end_message DEBUG: Usage tracking end message (unencoded): {'correlator': '4175db09-a7d3-473e-9d1a-76704ab06799', 'end': 1750818584, 'components': [{'c': 'parsl.dataflow.dflow.DataFlowKernel', 'app_count': 4, 'app_fails': 0}, {'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ -1750818584.162406 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1244 cleanup INFO: Closed usage tracking │ │ │ │ -1750818584.162593 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1246 cleanup INFO: Closing job status poller │ │ │ │ -1750818584.162879 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1248 cleanup INFO: Terminated job status poller │ │ │ │ -1750818584.163090 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1250 cleanup INFO: Shutting down executors │ │ │ │ -1750818584.163270 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor default │ │ │ │ -1750818584.163444 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818584.163724 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818584.163944 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor default │ │ │ │ -1750818584.164123 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor test │ │ │ │ -1750818584.164286 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818584.164449 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818584.164607 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor test │ │ │ │ -1750818584.164770 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor _parsl_internal │ │ │ │ -1750818584.164944 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ -1750818584.165232 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ -1750818584.165429 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor _parsl_internal │ │ │ │ -1750818584.165608 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1257 cleanup INFO: Terminated executors │ │ │ │ -1750818584.165774 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1273 cleanup INFO: DFK cleanup complete │ │ │ │ -1750818584.165975 2025-06-24 14:29:44 MainProcess-128551 MainThread-4156798720 parsl.process_loggers:28 wrapped DEBUG: Normal ending for cleanup on thread MainThread │ │ │ │ -1750818626.842208 2025-06-24 14:30:26 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ -1750818626.843064 2025-06-24 14:30:26 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ -1750818626.843153 2025-06-24 14:30:26 MainProcess-128551 MainThread-4156798720 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ +1716408583.644807 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:93 __init__ INFO: Parsl version: 1.3.0-dev │ │ │ │ +1716408583.645225 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:114 __init__ DEBUG: Tracking status: False │ │ │ │ +1716408583.646095 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:148 construct_start_message DEBUG: Usage tracking start message: {'correlator': '29831aeb-af5a-46a9-aa91-b234ecf9ad6a', 'parsl_v': '1.3.0-dev', 'python_v': '3.11.9', 'platform.system': 'Linux', 'start': 1716408583, 'components': [{'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ +1716408583.646500 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:121 __init__ INFO: Run id is: becdbc88-5af0-4a98-a594-2b6346dab27a │ │ │ │ +1716408583.775770 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ +1716408583.776146 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/parsl/dataflow/dflow.py │ │ │ │ +1716408583.776407 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:128 __init__ DEBUG: Considering candidate for workflow name: /usr/lib/python3/dist-packages/qiime2/sdk/parallel_config.py │ │ │ │ +1716408583.776664 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:134 __init__ DEBUG: Using parallel_config.py as workflow name │ │ │ │ +1716408583.777127 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.memoization:163 __init__ INFO: App caching initialized │ │ │ │ +1716408583.777424 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.jobs.strategy:145 __init__ DEBUG: Scaling strategy: none │ │ │ │ +1716408583.780066 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:994 submit DEBUG: Task 0 will be sent to executor _parsl_internal │ │ │ │ +1716408583.780433 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408583.780669 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1072 submit INFO: Task 0 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408583.780891 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1078 submit DEBUG: Task 0 set to pending state with AppFuture: │ │ │ │ +1716408583.781106 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.memoization:222 check_memo DEBUG: Task 0 will not be memoized │ │ │ │ +1716408583.782998 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 0 try 0 launched on executor _parsl_internal │ │ │ │ +1716408583.783322 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408583.783550 2024-05-23 10:09:43 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408583.795661 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:994 submit DEBUG: Task 1 will be sent to executor default │ │ │ │ +1716408583.796096 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408583.796397 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1072 submit INFO: Task 1 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408583.796715 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1078 submit DEBUG: Task 1 set to pending state with AppFuture: │ │ │ │ +1716408583.797038 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.memoization:222 check_memo DEBUG: Task 1 will not be memoized │ │ │ │ +1716408583.801378 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 1 try 0 launched on executor default │ │ │ │ +1716408583.801828 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ +1716408583.802208 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ +1716408583.803576 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:994 submit DEBUG: Task 2 will be sent to executor default │ │ │ │ +1716408583.803987 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408583.804323 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1072 submit INFO: Task 2 submitted for App _run_parsl_action, not waiting on any dependency │ │ │ │ +1716408583.804670 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1078 submit DEBUG: Task 2 set to pending state with AppFuture: │ │ │ │ +1716408583.805045 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.memoization:222 check_memo DEBUG: Task 2 will not be memoized │ │ │ │ +1716408583.806401 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 2 try 0 launched on executor default │ │ │ │ +1716408583.806731 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ +1716408583.807012 2024-05-23 10:09:43 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ +1716408584.019965 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:570 _complete_task INFO: Task 1 completed (launched -> exec_done) │ │ │ │ +1716408584.020396 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 1 will not be redirected. │ │ │ │ +1716408584.020693 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 1 will not be redirected. │ │ │ │ +1716408584.256604 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:570 _complete_task INFO: Task 2 completed (launched -> exec_done) │ │ │ │ +1716408584.257063 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 2 will not be redirected. │ │ │ │ +1716408584.258610 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-6_0-4036791104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 2 will not be redirected. │ │ │ │ +1716408584.877722 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:994 submit DEBUG: Task 3 will be sent to executor test │ │ │ │ +1716408584.878156 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:787 _add_output_deps DEBUG: Adding output dependencies │ │ │ │ +1716408584.878450 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1072 submit INFO: Task 3 submitted for App _create_future, not waiting on any dependency │ │ │ │ +1716408584.878758 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1078 submit DEBUG: Task 3 set to pending state with AppFuture: │ │ │ │ +1716408584.879053 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.memoization:222 check_memo DEBUG: Task 3 will not be memoized │ │ │ │ +1716408584.879972 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:745 launch_task INFO: Parsl task 3 try 0 launched on executor test │ │ │ │ +1716408584.880312 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ +1716408584.880621 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ +1716408584.880977 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:570 _complete_task INFO: Task 3 completed (launched -> exec_done) │ │ │ │ +1716408584.881383 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 3 will not be redirected. │ │ │ │ +1716408584.881615 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 3 will not be redirected. │ │ │ │ +1716408584.881974 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:453 handle_join_update DEBUG: Join callback for task 0, inner_app_future │ │ │ │ +1716408584.882293 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:570 _complete_task INFO: Task 0 completed (joining -> exec_done) │ │ │ │ +1716408584.882596 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408584.882858 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408584.883121 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard out for task 0 will not be redirected. │ │ │ │ +1716408584.883376 2024-05-23 10:09:44 MainProcess-34166 ThreadPoolExecutor-8_0-4005559104 parsl.dataflow.dflow:1421 log_std_stream INFO: Standard error for task 0 will not be redirected. │ │ │ │ +1716408584.883746 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1220 cleanup INFO: DFK cleanup initiated │ │ │ │ +1716408584.884056 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1116 log_task_states INFO: Summary of tasks in DFK: │ │ │ │ +1716408584.884367 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.unsched: 0 │ │ │ │ +1716408584.884630 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.pending: 0 │ │ │ │ +1716408584.884900 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running: 0 │ │ │ │ +1716408584.885216 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.exec_done: 4 │ │ │ │ +1716408584.885581 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.failed: 0 │ │ │ │ +1716408584.885871 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.dep_fail: 0 │ │ │ │ +1716408584.886108 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.launched: 0 │ │ │ │ +1716408584.886347 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.fail_retryable: 0 │ │ │ │ +1716408584.886579 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.memo_done: 0 │ │ │ │ +1716408584.886817 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.joining: 0 │ │ │ │ +1716408584.887059 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1120 log_task_states INFO: Tasks in state States.running_ended: 0 │ │ │ │ +1716408584.887294 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1122 log_task_states INFO: End of summary │ │ │ │ +1716408584.887534 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1241 cleanup INFO: Sending end message for usage tracking │ │ │ │ +1716408584.888336 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.usage_tracking.usage:172 construct_end_message DEBUG: Usage tracking end message (unencoded): {'correlator': '29831aeb-af5a-46a9-aa91-b234ecf9ad6a', 'end': 1716408584, 'components': [{'c': 'parsl.dataflow.dflow.DataFlowKernel', 'app_count': 4, 'app_fails': 0}, {'c': 'parsl.config.Config', 'executors_len': 2}, 'parsl.executors.threads.ThreadPoolExecutor', 'qiime2.sdk.parallel_config._TEST_EXECUTOR_']} │ │ │ │ +1716408584.888692 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1244 cleanup INFO: Closed usage tracking │ │ │ │ +1716408584.888966 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1246 cleanup INFO: Closing job status poller │ │ │ │ +1716408584.894539 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1248 cleanup INFO: Terminated job status poller │ │ │ │ +1716408584.894895 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1250 cleanup INFO: Shutting down executors │ │ │ │ +1716408584.895144 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor default │ │ │ │ +1716408584.895398 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408584.895808 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408584.896063 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor default │ │ │ │ +1716408584.896314 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor test │ │ │ │ +1716408584.896557 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408584.897015 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408584.897360 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor test │ │ │ │ +1716408584.897616 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1253 cleanup INFO: Shutting down executor _parsl_internal │ │ │ │ +1716408584.897899 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:74 shutdown DEBUG: Shutting down executor, which involves waiting for running tasks to complete │ │ │ │ +1716408584.898340 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.executors.threads:76 shutdown DEBUG: Done with executor shutdown │ │ │ │ +1716408584.898816 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1255 cleanup INFO: Shut down executor _parsl_internal │ │ │ │ +1716408584.899101 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1257 cleanup INFO: Terminated executors │ │ │ │ +1716408584.899390 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1273 cleanup INFO: DFK cleanup complete │ │ │ │ +1716408584.899634 2024-05-23 10:09:44 MainProcess-34166 MainThread-4160296704 parsl.process_loggers:28 wrapped DEBUG: Normal ending for cleanup on thread MainThread │ │ │ │ +1716408686.361664 2024-05-23 10:11:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ +1716408686.361910 2024-05-23 10:11:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ │ │ +1716408686.362047 2024-05-23 10:11:26 MainProcess-34166 MainThread-4160296704 parsl.dataflow.dflow:1185 atexit_cleanup INFO: python process is exiting, but DFK has already been cleaned up │ │ ├── xz --list │ │ │ @@ -1,13 +1,13 @@ │ │ │ Streams: 1 │ │ │ Blocks: 1 │ │ │ - Compressed size: 82.2 KiB (84156 B) │ │ │ + Compressed size: 82.2 KiB (84164 B) │ │ │ Uncompressed size: 540.0 KiB (552960 B) │ │ │ Ratio: 0.152 │ │ │ Check: CRC64 │ │ │ Stream Padding: 0 B │ │ │ Streams: │ │ │ Stream Blocks CompOffset UncompOffset CompSize UncompSize Ratio Check Padding │ │ │ - 1 1 0 0 84156 552960 0.152 CRC64 0 │ │ │ + 1 1 0 0 84164 552960 0.152 CRC64 0 │ │ │ Blocks: │ │ │ Stream Block CompOffset UncompOffset TotalSize UncompSize Ratio Check │ │ │ - 1 1 12 0 84120 552960 0.152 CRC64 │ │ │ + 1 1 12 0 84128 552960 0.152 CRC64