--- /srv/reproducible-results/rbuild-debian/r-b-build.qhBPyV6p/b1/pyqi_0.3.2+dfsg-12_armhf.changes +++ /srv/reproducible-results/rbuild-debian/r-b-build.qhBPyV6p/b2/pyqi_0.3.2+dfsg-12_armhf.changes ├── Files │ @@ -1,2 +1,2 @@ │ │ - 84837cadcf33942b8f048f7c596c621a 82684 python optional pyqi_0.3.2+dfsg-12_all.deb │ + 8ea22dc63f94d3c2ce2b4ebd0aec0ac0 82684 python optional pyqi_0.3.2+dfsg-12_all.deb ├── pyqi_0.3.2+dfsg-12_all.deb │ ├── control.tar.xz │ │ ├── control.tar │ │ │ ├── ./md5sums │ │ │ │ ├── ./md5sums │ │ │ │ │┄ Files differ │ ├── data.tar.xz │ │ ├── data.tar │ │ │ ├── ./usr/share/doc/pyqi/html/guidelines/index.html │ │ │ │ @@ -44,12 +44,12 @@ │ │ │ │ Contents │ │ │ │

│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ ├── html2text {} │ │ │ │ │ @@ -1,8 +1,8 @@ │ │ │ │ │ ************ _pp_yy_qq_ii_::_ _ee_xx_pp_oo_ss_ee_ _yy_oo_uu_rr_ _ii_nn_tt_ee_rr_ff_aa_cc_ee ************ │ │ │ │ │ ********** ppyyqqii ccooddiinngg gguuiiddeelliinneess ********** │ │ │ │ │ _C_o_n_t_e_n_t_s │ │ │ │ │ ************ ppyyqqii ccooddiinngg gguuiiddeelliinneess_?¶ ************ │ │ │ │ │ * _G_u_i_d_e_l_i_n_e_s_ _f_o_r_ _c_r_e_a_t_i_n_g_ _p_y_q_i_-_b_a_s_e_d_ _o_p_t_p_a_r_s_e_ _i_n_t_e_r_f_a_c_e_s │ │ │ │ │ _C_o_n_t_e_n_t_s │ │ │ │ │ -© Copyright 2013, The BiPy Development Team. Last updated on Dec 09, 2024. │ │ │ │ │ +© Copyright 2013, The BiPy Development Team. Last updated on Dec 10, 2024. │ │ │ │ │ Created using _S_p_h_i_n_x 8.1.3. │ │ │ ├── ./usr/share/doc/pyqi/html/guidelines/optparse.html │ │ │ │ @@ -48,12 +48,12 @@ │ │ │ │ Contents │ │ │ │

│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ ├── html2text {} │ │ │ │ │ @@ -51,9 +51,9 @@ │ │ │ │ │ found that this is the most convenient way for users to define where the output │ │ │ │ │ of scripts should live, but there are likely special cases where you'd want to │ │ │ │ │ deviate from this general guideline. Do aallwwaayyss give the user control over the │ │ │ │ │ name of either the file or the directory where output will be created. You │ │ │ │ │ don't want them to have to move a file to a different location if they want to │ │ │ │ │ run your script multiple times. │ │ │ │ │ _C_o_n_t_e_n_t_s │ │ │ │ │ -© Copyright 2013, The BiPy Development Team. Last updated on Dec 09, 2024. │ │ │ │ │ +© Copyright 2013, The BiPy Development Team. Last updated on Dec 10, 2024. │ │ │ │ │ Created using _S_p_h_i_n_x 8.1.3. │ │ │ ├── ./usr/share/doc/pyqi/html/index.html │ │ │ │ @@ -66,12 +66,12 @@ │ │ │ │ Contents │ │ │ │

│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ ├── html2text {} │ │ │ │ │ @@ -48,9 +48,9 @@ │ │ │ │ │ Yes! pyqi is open source software, available under the BSD license. All source │ │ │ │ │ code is hosted in the _p_y_q_i_ _G_i_t_H_u_b_ _r_e_p_o_s_i_t_o_r_y. │ │ │ │ │ Development is primarily occurring in the _C_a_p_o_r_a_s_o_ _L_a_b (Northern Arizona │ │ │ │ │ University; Argonne National Laboratories) and _K_n_i_g_h_t_ _L_a_b (University of │ │ │ │ │ Colorado; Howard Hughes Medical Institute), but the goal is for pyqi to be a │ │ │ │ │ very open development effort. We accept code submissions as _p_u_l_l_ _r_e_q_u_e_s_t_s. │ │ │ │ │ _C_o_n_t_e_n_t_s │ │ │ │ │ -© Copyright 2013, The BiPy Development Team. Last updated on Dec 09, 2024. │ │ │ │ │ +© Copyright 2013, The BiPy Development Team. Last updated on Dec 10, 2024. │ │ │ │ │ Created using _S_p_h_i_n_x 8.1.3. │ │ │ ├── ./usr/share/doc/pyqi/html/install/index.html │ │ │ │ @@ -80,12 +80,12 @@ │ │ │ │ Contents │ │ │ │

│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ ├── html2text {} │ │ │ │ │ @@ -45,9 +45,9 @@ │ │ │ │ │ do │ │ │ │ │ source $f; │ │ │ │ │ done │ │ │ │ │ When you open a new terminal, tab completion should work for the pyqi commands │ │ │ │ │ and their options. You can test this by typing pyqi make-c and then hitting the │ │ │ │ │ tab key (there should be no space after pyqi make-c). │ │ │ │ │ _C_o_n_t_e_n_t_s │ │ │ │ │ -© Copyright 2013, The BiPy Development Team. Last updated on Dec 09, 2024. │ │ │ │ │ +© Copyright 2013, The BiPy Development Team. Last updated on Dec 10, 2024. │ │ │ │ │ Created using _S_p_h_i_n_x 8.1.3. │ │ │ ├── ./usr/share/doc/pyqi/html/search.html │ │ │ │ @@ -68,12 +68,12 @@ │ │ │ │ Contents │ │ │ │

│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ ├── html2text {} │ │ │ │ │ @@ -2,9 +2,9 @@ │ │ │ │ │ ********** SSeeaarrcchh ********** │ │ │ │ │ _C_o_n_t_e_n_t_s │ │ │ │ │ ************ SSeeaarrcchh ************ │ │ │ │ │ Please activate JavaScript to enable the search functionality. │ │ │ │ │ Searching for multiple words only shows matches that contain all words. │ │ │ │ │ [q ][search] │ │ │ │ │ _C_o_n_t_e_n_t_s │ │ │ │ │ -© Copyright 2013, The BiPy Development Team. Last updated on Dec 09, 2024. │ │ │ │ │ +© Copyright 2013, The BiPy Development Team. Last updated on Dec 10, 2024. │ │ │ │ │ Created using _S_p_h_i_n_x 8.1.3. │ │ │ ├── ./usr/share/doc/pyqi/html/tutorials/defining_new_commands.html │ │ │ │ @@ -226,12 +226,12 @@ │ │ │ │ Contents │ │ │ │

│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ ├── html2text {} │ │ │ │ │ @@ -223,9 +223,9 @@ │ │ │ │ │ # For example, we can call the command again passing the │ │ │ │ │ # suppress_length_summary parameter. │ │ │ │ │ >>> r = s(seqs=[('sequence1','ACCGTGGACCAA'), │ │ │ │ │ ('sequence2','TGTGGA')],suppress_length_summary=True) │ │ │ │ │ >>> r │ │ │ │ │ {'max_length': None, 'min_length': None, 'num_seqs': 2} │ │ │ │ │ _C_o_n_t_e_n_t_s │ │ │ │ │ -© Copyright 2013, The BiPy Development Team. Last updated on Dec 09, 2024. │ │ │ │ │ +© Copyright 2013, The BiPy Development Team. Last updated on Dec 10, 2024. │ │ │ │ │ Created using _S_p_h_i_n_x 8.1.3. │ │ │ ├── ./usr/share/doc/pyqi/html/tutorials/defining_new_interfaces.html │ │ │ │ @@ -520,12 +520,12 @@ │ │ │ │ Contents │ │ │ │

│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ ├── html2text {} │ │ │ │ │ @@ -548,9 +548,9 @@ │ │ │ │ │ multiple_choice one or more values from a list of choices │ │ │ │ │ blast_db a blast database │ │ │ │ │ ********** TThhoouugghhttss aanndd gguuiiddeelliinneess oonn ddeessiiggnniinngg ccoommmmaanndd lliinnee iinntteerrffaacceess_?¶ ********** │ │ │ │ │ Based on our experiences developing command line interfaces for _Q_I_I_M_E, we've │ │ │ │ │ compiled some thoughts on best practices, which you can find in _G_u_i_d_e_l_i_n_e_s_ _f_o_r │ │ │ │ │ _c_r_e_a_t_i_n_g_ _p_y_q_i_-_b_a_s_e_d_ _o_p_t_p_a_r_s_e_ _i_n_t_e_r_f_a_c_e_s. │ │ │ │ │ _C_o_n_t_e_n_t_s │ │ │ │ │ -© Copyright 2013, The BiPy Development Team. Last updated on Dec 09, 2024. │ │ │ │ │ +© Copyright 2013, The BiPy Development Team. Last updated on Dec 10, 2024. │ │ │ │ │ Created using _S_p_h_i_n_x 8.1.3. │ │ │ ├── ./usr/share/doc/pyqi/html/tutorials/defining_your_command_driver.html │ │ │ │ @@ -84,12 +84,12 @@ │ │ │ │ Contents │ │ │ │

│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ ├── html2text {} │ │ │ │ │ @@ -58,9 +58,9 @@ │ │ │ │ │ for f in ~/.bash_completion.d/*; │ │ │ │ │ do │ │ │ │ │ source $f; │ │ │ │ │ done │ │ │ │ │ When you open a new terminal, tab completion should work for the my-project │ │ │ │ │ commands and their options. │ │ │ │ │ _C_o_n_t_e_n_t_s │ │ │ │ │ -© Copyright 2013, The BiPy Development Team. Last updated on Dec 09, 2024. │ │ │ │ │ +© Copyright 2013, The BiPy Development Team. Last updated on Dec 10, 2024. │ │ │ │ │ Created using _S_p_h_i_n_x 8.1.3. │ │ │ ├── ./usr/share/doc/pyqi/html/tutorials/index.html │ │ │ │ @@ -93,12 +93,12 @@ │ │ │ │ Contents │ │ │ │

│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ ├── html2text {} │ │ │ │ │ @@ -53,9 +53,9 @@ │ │ │ │ │ As pyqi matures we'll include tutorials covering topics such as how to define │ │ │ │ │ new interface types. However, given the early state of development that we're │ │ │ │ │ currently in, these will likely change a lot, so we recommend that if you are │ │ │ │ │ interested in developing new interface types now, that you get in touch (you │ │ │ │ │ can e-mail _g_r_e_g_c_a_p_o_r_a_s_o_@_g_m_a_i_l_._c_o_m for now) to discuss what you'd like to do, │ │ │ │ │ and possibly get involved with development of pyqi. │ │ │ │ │ _C_o_n_t_e_n_t_s │ │ │ │ │ -© Copyright 2013, The BiPy Development Team. Last updated on Dec 09, 2024. │ │ │ │ │ +© Copyright 2013, The BiPy Development Team. Last updated on Dec 10, 2024. │ │ │ │ │ Created using _S_p_h_i_n_x 8.1.3. │ │ │ ├── ./usr/share/doc/pyqi/html/tutorials/organizing_your_repository.html │ │ │ │ @@ -125,12 +125,12 @@ │ │ │ │ Contents │ │ │ │

│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ ├── html2text {} │ │ │ │ │ @@ -117,9 +117,9 @@ │ │ │ │ │ nesting in the library code directory. │ │ │ │ │ Finally, under the scripts directory there is a single executable, biom, which │ │ │ │ │ is the OptparseInterface command driver. This is a simple shell script that │ │ │ │ │ allows users to access the OptparseInterfaces defined in the biom-format │ │ │ │ │ project. Defining this script for your project is covered in _D_e_f_i_n_i_n_g_ _y_o_u_r │ │ │ │ │ _c_o_m_m_a_n_d_ _d_r_i_v_e_r. │ │ │ │ │ _C_o_n_t_e_n_t_s │ │ │ │ │ -© Copyright 2013, The BiPy Development Team. Last updated on Dec 09, 2024. │ │ │ │ │ +© Copyright 2013, The BiPy Development Team. Last updated on Dec 10, 2024. │ │ │ │ │ Created using _S_p_h_i_n_x 8.1.3.