--- /srv/reproducible-results/rbuild-debian/r-b-build.8Dw28JFb/b1/mia_2.4.7-13_armhf.changes +++ /srv/reproducible-results/rbuild-debian/r-b-build.8Dw28JFb/b2/mia_2.4.7-13_armhf.changes ├── Files │ @@ -1,9 +1,9 @@ │ │ 99e2d1de35741a49783817003c1db134 89285224 debug optional libmia-2.4-4-dbgsym_2.4.7-13_armhf.deb │ 864b24dd215690c13dcb32c024fe71ce 4122756 libs optional libmia-2.4-4_2.4.7-13_armhf.deb │ 781a7255a4d9f4c6bdbcdc737631225a 205268 libdevel optional libmia-2.4-dev_2.4.7-13_armhf.deb │ 4b782e2ec1f353f4e22ba18dde5f87d4 7070244 doc optional libmia-2.4-doc_2.4.7-13_all.deb │ b98296a28e5f8232780a9f392da185d1 26308 science optional mia-doctools_2.4.7-13_all.deb │ 5544c848d042b4f7a800a7d0aafb9795 34639148 debug optional mia-tools-dbgsym_2.4.7-13_armhf.deb │ - f70522c4ff8f5bb334d92eae9dbd9253 96416 doc optional mia-tools-doc_2.4.7-13_all.deb │ - c1c2b20c7221b3493bf181cfc475ab8a 1731844 science optional mia-tools_2.4.7-13_armhf.deb │ + de63ac7ba850e80a4cab8ecaf21ea3f1 96436 doc optional mia-tools-doc_2.4.7-13_all.deb │ + f13a57b57aebfd4a1e4d72fb059db104 1731864 science optional mia-tools_2.4.7-13_armhf.deb ├── mia-tools-doc_2.4.7-13_all.deb │ ├── file list │ │ @@ -1,3 +1,3 @@ │ │ -rw-r--r-- 0 0 0 4 2023-08-29 09:00:00.000000 debian-binary │ │ --rw-r--r-- 0 0 0 5948 2023-08-29 09:00:00.000000 control.tar.xz │ │ --rw-r--r-- 0 0 0 90276 2023-08-29 09:00:00.000000 data.tar.xz │ │ +-rw-r--r-- 0 0 0 5944 2023-08-29 09:00:00.000000 control.tar.xz │ │ +-rw-r--r-- 0 0 0 90300 2023-08-29 09:00:00.000000 data.tar.xz │ ├── control.tar.xz │ │ ├── control.tar │ │ │ ├── ./md5sums │ │ │ │ ├── ./md5sums │ │ │ │ │┄ Files differ │ │ ├── xz --list │ │ │ @@ -1,13 +1,13 @@ │ │ │ Streams: 1 │ │ │ Blocks: 1 │ │ │ - Compressed size: 5948 B │ │ │ + Compressed size: 5944 B │ │ │ Uncompressed size: 30.0 KiB (30720 B) │ │ │ - Ratio: 0.194 │ │ │ + Ratio: 0.193 │ │ │ Check: CRC64 │ │ │ Stream Padding: 0 B │ │ │ Streams: │ │ │ Stream Blocks CompOffset UncompOffset CompSize UncompSize Ratio Check Padding │ │ │ - 1 1 0 0 5948 30720 0.194 CRC64 0 │ │ │ + 1 1 0 0 5944 30720 0.193 CRC64 0 │ │ │ Blocks: │ │ │ Stream Block CompOffset UncompOffset TotalSize UncompSize Ratio Check │ │ │ - 1 1 12 0 5912 30720 0.192 CRC64 │ │ │ + 1 1 12 0 5908 30720 0.192 CRC64 │ ├── data.tar.xz │ │ ├── data.tar │ │ │ ├── ./usr/share/doc/mia-2.4/userref/SecPlugintype2dimagefilter.html │ │ │ │ @@ -57,15 +57,15 @@ │ │ │ │
│ │ │ │
intensity bandpass filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
max | float | 3.40282e+38 | maximum of the band |
min | float | 0 | minimum of the band |
│ │ │ │
│ │ │ │
image binarize filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
max | float | 3.40282e+38 | maximum of accepted range |
min | float | 0 | minimum of accepted range |
│ │ │ │
│ │ │ │
morphological close. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
hint | set | black | a hint at the main image content Supported values are:(black, white, ) |
shape | factory | [sphere:r=2] | structuring element. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │
│ │ │ │ -
Combine two images with the given combiner operator. if 'reverse' is set to false, the first operator is the image passed through the filter pipeline, and the second image is loaded from the file given with the 'image' parameter the moment the filter is run.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
image | io | (required,input) | second image that is needed in the combiner. For supported file types see Plugin type: 2dimage/io |
op | factory | (required) | Image combiner to be applied to the images. For supported plug-ins see Plugin type: 2dimage/combiner |
reverse | bool | 0 | reverse the order in which the images passed to the combiner |
│ │ │ │ +
Combine two images with the given combiner operator. if 'reverse' is set to false, the first operator is the image passed through the filter pipeline, and the second image is loaded from the file given with the 'image' parameter the moment the filter is run.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
image | io | (input,required) | second image that is needed in the combiner. For supported file types see Plugin type: 2dimage/io |
op | factory | (required) | Image combiner to be applied to the images. For supported plug-ins see Plugin type: 2dimage/combiner |
reverse | bool | 0 | reverse the order in which the images passed to the combiner |
│ │ │ │
│ │ │ │
image pixel format conversion filter. Supported parameters are:
Name | Type | Default | Description | ||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
a | float | 1 | linear conversion parameter a | ||||||||||||||||||||||||||
b | float | 0 | linear conversion parameter b | ||||||||||||||||||||||||||
map | dict | opt |
| ||||||||||||||||||||||||||
repn | dict | ubyte |
|
│ │ │ │
│ │ │ │
Crop a region of an image, the region is always clamped to the original image size.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
end | streamable | [[-1,-1]] | end of crop region |
start | streamable | [[0,0]] | start of crop region |
│ │ │ │
│ │ │ │
2d image stack dilate filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
hint | set | black | a hint at the main image content Supported values are:(black, white, ) |
shape | factory | [sphere:r=2] | structuring element. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │
│ │ │ │ @@ -81,43 +81,43 @@ │ │ │ │
│ │ │ │
│ │ │ │
│ │ │ │
2D image k-means filter. In the output image the pixel value represents the class membership and the class centers are stored as attribute in the image.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
c | int in [2, inf) | 3 | number of classes |
│ │ │ │
│ │ │ │
Label connected components in a binary 2D image.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
n | factory | 4n | Neighborhood mask to describe connectivity.. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │
│ │ │ │ -
Image filter to remap label id's. Only applicable to images with integer valued intensities/labels.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
map | string | (required,input) | Label mapping file |
│ │ │ │ +
Image filter to remap label id's. Only applicable to images with integer valued intensities/labels.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
map | string | (input,required) | Label mapping file |
│ │ │ │
│ │ │ │
A filter that only creates output voxels that are already created in the input image. Scaling is done by using a voting algorithms that selects the target pixel value based on the highest pixel count of a certain label in the corresponding source region. If the region comprises two labels with the same count, the one with the lower number wins.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
out-size | 2dbounds | (required) | target size given as two coma separated values |
│ │ │ │
│ │ │ │ -
Load the input image from a file and use it to replace the current image in the pipeline.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
file | io | (required,input) | name of the input file to load from.. For supported file types see Plugin type: 2dimage/io |
│ │ │ │ +
Load the input image from a file and use it to replace the current image in the pipeline.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
file | io | (input,required) | name of the input file to load from.. For supported file types see Plugin type: 2dimage/io |
│ │ │ │
│ │ │ │ -
2D masking, one of the two input images must by of type bit.. Supported parameters are:
Name | Type | Default | Description | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
fill | dict | min |
| ||||||||
input | io | (required,input) | second input image file name. For supported file types see Plugin type: 2dimage/io | ||||||||
inverse | bool | 0 | set to true to use the inverse of the mask for masking |
│ │ │ │ +
2D masking, one of the two input images must by of type bit.. Supported parameters are:
Name | Type | Default | Description | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
fill | dict | min |
| ||||||||
input | io | (input,required) | second input image file name. For supported file types see Plugin type: 2dimage/io | ||||||||
inverse | bool | 0 | set to true to use the inverse of the mask for masking |
│ │ │ │
│ │ │ │ -
This filter implements the uses the max-flow min-cut algorithmfor image segmentation. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
sink-flow | io | (required,input) | Image of float type to define the per-pixel flow to the sink. For supported file types see Plugin type: 2dimage/io |
source-flow | io | (required,input) | Image of float type to define the per-pixel flow to the source. For supported file types see Plugin type: 2dimage/io |
│ │ │ │ +
This filter implements the uses the max-flow min-cut algorithmfor image segmentation. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
sink-flow | io | (input,required) | Image of float type to define the per-pixel flow to the sink. For supported file types see Plugin type: 2dimage/io |
source-flow | io | (input,required) | Image of float type to define the per-pixel flow to the source. For supported file types see Plugin type: 2dimage/io |
│ │ │ │
│ │ │ │
2D image mean filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
w | int in [1, inf) | 1 | half filter width |
│ │ │ │
│ │ │ │ -
Filter that evaluates simultaniously the pixel wise mean and the variance of an image in a given window. Pixel intensities below the given threshold will be ignored and at their loctions the output mean and variation are set to zero. The mean intensity image is directly passed as float image to the pipeline, the variation image is saved to a file given with the varfile parameter.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
thresh | double in [0, inf) | 0 | Intensity thresholding parameter: Pixels with intensities below this threshold will be set to zero, and also not used when evaluating mean and variation |
varfile | io | (required,output) | name of the output file to save the variation image too.. For supported file types see Plugin type: 2dimage/io |
w | uint in [1, inf) | 1 | filter width parameter |
│ │ │ │ +
Filter that evaluates simultaniously the pixel wise mean and the variance of an image in a given window. Pixel intensities below the given threshold will be ignored and at their loctions the output mean and variation are set to zero. The mean intensity image is directly passed as float image to the pipeline, the variation image is saved to a file given with the varfile parameter.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
thresh | double in [0, inf) | 0 | Intensity thresholding parameter: Pixels with intensities below this threshold will be set to zero, and also not used when evaluating mean and variation |
varfile | io | (output,required) | name of the output file to save the variation image too.. For supported file types see Plugin type: 2dimage/io |
w | uint in [1, inf) | 1 | filter width parameter |
│ │ │ │
│ │ │ │
2D image median filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
w | int in [1, inf) | 1 | half filter width |
│ │ │ │
│ │ │ │ -
Filter that evaluates simultaniously the pixel wise median and the median absolute deviation (MAD) of an image in a given window. Pixel intensities below the given threshold will be ignored and at their loctions the output median and MAD are set to zero. The median intensity image is directly passed to the pipeline, the variation image is saved to a file given with the varfile parameter. Both output images have the same pixel type like the input image.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
madfile | io | (required,output) | name of the output file to save the median absolute deviation image too.. For supported file types see Plugin type: 2dimage/io |
thresh | double in [0, inf) | 0 | Intensity thresholding parameter: Pixels with intensities below this threshold will be set to zero, and also not used when evaluating mean and variation |
w | uint in [1, inf) | 1 | filter width parameter |
│ │ │ │ +
Filter that evaluates simultaniously the pixel wise median and the median absolute deviation (MAD) of an image in a given window. Pixel intensities below the given threshold will be ignored and at their loctions the output median and MAD are set to zero. The median intensity image is directly passed to the pipeline, the variation image is saved to a file given with the varfile parameter. Both output images have the same pixel type like the input image.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
madfile | io | (output,required) | name of the output file to save the median absolute deviation image too.. For supported file types see Plugin type: 2dimage/io |
thresh | double in [0, inf) | 0 | Intensity thresholding parameter: Pixels with intensities below this threshold will be set to zero, and also not used when evaluating mean and variation |
w | uint in [1, inf) | 1 | filter width parameter |
│ │ │ │
│ │ │ │
Mean of Least Variance 2D image filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
w | int in [1, inf) | 1 | filter width parameter |
│ │ │ │
│ │ │ │
│ │ │ │
│ │ │ │
2D image noise filter: add additive or modulated noise to an image. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
g | factory | [gauss:mu=0,sigma=10] | noise generator. For supported plug-ins see Plugin type: generator/noise |
mod | bool | 0 | additive or modulated noise |
│ │ │ │
│ │ │ │
morphological open. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
hint | set | black | a hint at the main image content Supported values are:(black, white, ) |
shape | factory | [sphere:r=2] | structuring element. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │
│ │ │ │
Morphological pruning. Pruning until convergence will erase all pixels but closed loops.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
iter | int in [1, 1000000] | 0 | Number of iterations to run, 0=until convergence |
│ │ │ │
│ │ │ │ -
Region growing startin from a seed until only along increasing gradients. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
n | factory | 8n | Neighborhood shape. For supported plug-ins see Plugin type: 2dimage/shape |
seed | io | (required,input) | seed image (bit valued). For supported file types see Plugin type: 2dimage/io |
│ │ │ │ +
Region growing startin from a seed until only along increasing gradients. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
n | factory | 8n | Neighborhood shape. For supported plug-ins see Plugin type: 2dimage/shape |
seed | io | (input,required) | seed image (bit valued). For supported file types see Plugin type: 2dimage/io |
│ │ │ │
│ │ │ │
salt and pepper 3d filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
thresh | float in (0, inf) | 100 | thresh value |
w | int in [1, inf) | 1 | filter width parameter |
│ │ │ │
│ │ │ │
2D image downscale filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
interp | factory | [bspline:d=3] | interpolation method to be used . For supported plug-ins see Plugin type: 1d/splinekernel |
s | 2dbounds | [[0,0]] | target size as 2D vector |
sx | uint in [0, inf) | 0 | target size in x direction, 0: use input size |
sy | uint in [0, inf) | 0 | target size in y direction, 0: use input size |
│ │ │ │
│ │ │ │
│ │ │ │
│ │ │ │ @@ -125,25 +125,25 @@ │ │ │ │
│ │ │ │
2D image filter that evaluates the mean over a given neighborhood shape. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
shape | factory | 8n | neighborhood shape to evaluate the mean. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │
│ │ │ │
The 2D Sobel filter for gradient evaluation. Note that the output pixel type of the filtered image is the same as the input pixel type, so converting the input beforehand to a floating point valued image is recommendable.. Supported parameters are:
Name | Type | Default | Description | ||||||
---|---|---|---|---|---|---|---|---|---|
dir | dict | x |
|
│ │ │ │
│ │ │ │
This plug-in sorts the labels of a gray-scale image so that the lowest label value corresponts to the lable with themost pixels. The background (0) is not touched. (This plug-in doesn't take parameters)
│ │ │ │
│ │ │ │ -
seeded watershead. The algorithm extracts exactly so many reagions as initial labels are given in the seed image.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
grad | bool | 0 | Interpret the input image as gradient. |
mark | bool | 0 | Mark the segmented watersheds with a special gray scale value |
n | factory | [sphere:r=1] | Neighborhood for watershead region growing. For supported plug-ins see Plugin type: 2dimage/shape |
seed | string | (required,input) | seed input image containing the lables for the initial regions |
│ │ │ │ +
seeded watershead. The algorithm extracts exactly so many reagions as initial labels are given in the seed image.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
grad | bool | 0 | Interpret the input image as gradient. |
mark | bool | 0 | Mark the segmented watersheds with a special gray scale value |
n | factory | [sphere:r=1] | Neighborhood for watershead region growing. For supported plug-ins see Plugin type: 2dimage/shape |
seed | string | (input,required) | seed input image containing the lables for the initial regions |
│ │ │ │
│ │ │ │ -
Save the input image to a file and also pass it through to the next filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
file | io | (required,output) | name of the output file to save the image too.. For supported file types see Plugin type: 2dimage/io |
│ │ │ │ +
Save the input image to a file and also pass it through to the next filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
file | io | (output,required) | name of the output file to save the image too.. For supported file types see Plugin type: 2dimage/io |
│ │ │ │
│ │ │ │
Morphological thinning. Thinning until convergence will result in a 8-connected skeleton. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
iter | int in [1, 1000000] | 0 | Number of iterations to run, 0=until convergence |
│ │ │ │
│ │ │ │
This filter sets all pixels of an image to zero that fall below a certain threshold and whose neighbours in a given neighborhood shape also fall below a this threshold. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
shape | factory | 4n | neighborhood shape to take into account. For supported plug-ins see Plugin type: 2dimage/shape |
thresh | double | 5 | The threshold value |
│ │ │ │
│ │ │ │
2D image thresholded tmean filter: The output pixel value is zero if the input pixel value is below the given threshold, otherwise the pixels in the evaluation windows are only considered if the input pixel intensity is above the threshold.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
t | float | 0 | Threshold for pixels not to take into account |
w | int in [1, inf) | 1 | half filter width |
│ │ │ │
│ │ │ │ -
Transform the input image with the given transformation.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
file | io | (required,input) | Name of the file containing the transformation.. For supported file types see Plugin type: 2dtransform/io |
│ │ │ │ +
Transform the input image with the given transformation.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
file | io | (input,required) | Name of the file containing the transformation.. For supported file types see Plugin type: 2dtransform/io |
│ │ │ │
│ │ │ │
basic watershead segmentation.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
evalgrad | bool | 0 | Set to 1 if the input image does not represent a gradient norm image |
mark | bool | 0 | Mark the segmented watersheds with a special gray scale value |
n | factory | [sphere:r=1] | Neighborhood for watershead region growing. For supported plug-ins see Plugin type: 2dimage/shape |
thresh | float in [0, 1) | 0 | Relative gradient norm threshold. The actual value threshold value is thresh * (max_grad - min_grad) + min_grad. Bassins separated by gradients with a lower norm will be joined |
│ │ │ │
│ │ │ │ mia-2dimagefilter │ │ │ │ mia-2dimagefilterstack │ │ │ │ mia-2dsegment-fuzzyw │ │ │ │ mia-2dseries2dordermedian │ │ │ │ ├── html2text {} │ │ │ │ │ @@ -65,15 +65,15 @@ │ │ │ │ │ ccoommbbiinneerr │ │ │ │ │ Combine two images with the given combiner operator. if 'reverse' is set to │ │ │ │ │ false, the first operator is the image passed through the filter pipeline, and │ │ │ │ │ the second image is loaded from the file given with the 'image' parameter the │ │ │ │ │ moment the filter is run.. Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_ _ _NN_aa_mm_ee_ _|_ _ _TT_yy_pp_ee_ _|_ _ _ _ _ _ _DD_ee_ff_aa_uu_ll_tt_ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ _ _ _ | │ │ │ │ │ -| image | io |(required,input)|second image that is needed in the combiner.| │ │ │ │ │ +| image | io |(input,required)|second image that is needed in the combiner.| │ │ │ │ │ | | | |For supported file types see _P_l_u_g_i_n_ _t_y_p_e_: | │ │ │ │ │ |_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_2_d_i_m_a_g_e_/_i_o_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ | op |factory| (required) |Image combiner to be applied to the images. | │ │ │ │ │ | | | |For supported plug-ins see _P_l_u_g_i_n_ _t_y_p_e_: | │ │ │ │ │ |_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_2_d_i_m_a_g_e_/_c_o_m_b_i_n_e_r_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ |reverse| bool | 0 |reverse the order in which the images passed| │ │ │ │ │ |_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_t_o_ _t_h_e_ _c_o_m_b_i_n_e_r_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ @@ -174,57 +174,57 @@ │ │ │ │ │ | n |factory| 4n |Neighborhood mask to describe connectivity.. For | │ │ │ │ │ |_ _ _ _ _|_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _|_s_u_p_p_o_r_t_e_d_ _p_l_u_g_-_i_n_s_ _s_e_e_ _P_l_u_g_i_n_ _t_y_p_e_:_ _2_d_i_m_a_g_e_/_s_h_a_p_e| │ │ │ │ │ llaabbeellmmaapp │ │ │ │ │ Image filter to remap label id's. Only applicable to images with integer valued │ │ │ │ │ intensities/labels.. Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_NN_aa_mm_ee_|_ _TT_yy_pp_ee_ _|_ _ _ _ _ _ _DD_ee_ff_aa_uu_ll_tt_ _ _ _|_ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ | │ │ │ │ │ -|_m_a_p_ _|_s_t_r_i_n_g_|_(_r_e_q_u_i_r_e_d_,_i_n_p_u_t_)_|_L_a_b_e_l_ _m_a_p_p_i_n_g_ _f_i_l_e| │ │ │ │ │ +|_m_a_p_ _|_s_t_r_i_n_g_|_(_i_n_p_u_t_,_r_e_q_u_i_r_e_d_)_|_L_a_b_e_l_ _m_a_p_p_i_n_g_ _f_i_l_e| │ │ │ │ │ llaabbeellssccaallee │ │ │ │ │ A filter that only creates output voxels that are already created in the input │ │ │ │ │ image. Scaling is done by using a voting algorithms that selects the target │ │ │ │ │ pixel value based on the highest pixel count of a certain label in the │ │ │ │ │ corresponding source region. If the region comprises two labels with the same │ │ │ │ │ count, the one with the lower number wins.. Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_ _ _ _NN_aa_mm_ee_ _|_ _ _ _TT_yy_pp_ee_ _|_ _ _DD_ee_ff_aa_uu_ll_tt_ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ _ _ _ | │ │ │ │ │ |_o_u_t_-_s_i_z_e_|_2_d_b_o_u_n_d_s_|_(_r_e_q_u_i_r_e_d_)_|_t_a_r_g_e_t_ _s_i_z_e_ _g_i_v_e_n_ _a_s_ _t_w_o_ _c_o_m_a_ _s_e_p_a_r_a_t_e_d_ _v_a_l_u_e_s| │ │ │ │ │ llooaadd │ │ │ │ │ Load the input image from a file and use it to replace the current image in the │ │ │ │ │ pipeline.. Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_NN_aa_mm_ee_|_TT_yy_pp_ee_|_ _ _ _ _ _ _DD_ee_ff_aa_uu_ll_tt_ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ -|file| io |(required,input)|name of the input file to load from.. For | │ │ │ │ │ +|file| io |(input,required)|name of the input file to load from.. For | │ │ │ │ │ |_ _ _ _ _|_ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_s_u_p_p_o_r_t_e_d_ _f_i_l_e_ _t_y_p_e_s_ _s_e_e_ _P_l_u_g_i_n_ _t_y_p_e_:_ _2_d_i_m_a_g_e_/_i_o| │ │ │ │ │ mmaasskk │ │ │ │ │ 2D masking, one of the two input images must by of type bit.. Supported │ │ │ │ │ parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_ _ _NN_aa_mm_ee_ _|_TT_yy_pp_ee_|_ _ _ _ _ _ _DD_ee_ff_aa_uu_ll_tt_ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ _ _ _ | │ │ │ │ │ | fill |dict| min | _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ | | | ||_f_i_l_l_ _s_t_y_l_e_ _f_o_r_ _p_i_x_e_l_s_ _o_u_t_s_i_d_e_ _o_f_ _t_h_e_ _m_a_s_k| | │ │ │ │ │ | | | ||min: |set values outside the mask to the | | │ │ │ │ │ | | | ||_ _ _ _ _ _|_m_i_n_i_m_u_m_ _v_a_l_u_e_ _f_o_u_n_d_ _i_n_ _t_h_e_ _i_m_a_g_e_._ _ | | │ │ │ │ │ | | | ||zero:|set the values outside the mask to | | │ │ │ │ │ | | | ||_ _ _ _ _ _|_z_e_r_o_._ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | | │ │ │ │ │ | | | ||max: |set values outside the mask to the | | │ │ │ │ │ |_ _ _ _ _ _ _ _|_ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_|_ _ _ _ _ _|_m_a_x_i_m_u_m_ _v_a_l_u_e_ _f_o_u_n_d_ _i_n_ _t_h_e_ _i_m_a_g_e_._._ _|_ _ _ | │ │ │ │ │ -| input | io |(required,input)|second input image file name. For supported | │ │ │ │ │ +| input | io |(input,required)|second input image file name. For supported | │ │ │ │ │ |_ _ _ _ _ _ _ _|_ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_f_i_l_e_ _t_y_p_e_s_ _s_e_e_ _P_l_u_g_i_n_ _t_y_p_e_:_ _2_d_i_m_a_g_e_/_i_o_ _ _ _ _ _ _ _ | │ │ │ │ │ |inverse|bool| 0 |set to true to use the inverse of the mask for| │ │ │ │ │ |_ _ _ _ _ _ _ _|_ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_m_a_s_k_i_n_g_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ mmaaxxffllooww │ │ │ │ │ This filter implements the uses the max-flow min-cut algorithmfor image │ │ │ │ │ segmentation. Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_ _ _ _ _ _NN_aa_mm_ee_ _ _|_TT_yy_pp_ee_|_ _ _ _ _ _ _DD_ee_ff_aa_uu_ll_tt_ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ _ _ | │ │ │ │ │ -| sink-flow | io |(required,input)|Image of float type to define the per-pixel| │ │ │ │ │ +| sink-flow | io |(input,required)|Image of float type to define the per-pixel| │ │ │ │ │ | | | |flow to the sink. For supported file types | │ │ │ │ │ |_ _ _ _ _ _ _ _ _ _ _ _|_ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_s_e_e_ _P_l_u_g_i_n_ _t_y_p_e_:_ _2_d_i_m_a_g_e_/_i_o_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ -|source-flow| io |(required,input)|Image of float type to define the per-pixel| │ │ │ │ │ +|source-flow| io |(input,required)|Image of float type to define the per-pixel| │ │ │ │ │ | | | |flow to the source. For supported file | │ │ │ │ │ |_ _ _ _ _ _ _ _ _ _ _ _|_ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_t_y_p_e_s_ _s_e_e_ _P_l_u_g_i_n_ _t_y_p_e_:_ _2_d_i_m_a_g_e_/_i_o_ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ mmeeaann │ │ │ │ │ 2D image mean filter. Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_NN_aa_mm_ee_|_ _ _ _ _ _ _ _ _TT_yy_pp_ee_ _ _ _|_DD_ee_ff_aa_uu_ll_tt_|_ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ | │ │ │ │ │ |_ _ _w_ _|_i_n_t_ _i_n_ _[_1_,_ _i_n_f_)_|_ _ _ _ _1_ _ _|_h_a_l_f_ _f_i_l_t_e_r_ _w_i_d_t_h| │ │ │ │ │ @@ -239,15 +239,15 @@ │ │ │ │ │ |_ _ _NN_aa_mm_ee_ _|_ _ _ _ _ _ _ _ _ _ _TT_yy_pp_ee_ _ _ _ _|_ _ _ _ _ _ _ _DD_ee_ff_aa_uu_ll_tt_ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ | │ │ │ │ │ |thresh |double in [0, inf)| 0 |Intensity thresholding | │ │ │ │ │ | | | |parameter: Pixels with | │ │ │ │ │ | | | |intensities below this threshold| │ │ │ │ │ | | | |will be set to zero, and also | │ │ │ │ │ | | | |not used when evaluating mean | │ │ │ │ │ |_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_a_n_d_ _v_a_r_i_a_t_i_o_n_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ -|varfile| io |(required,output)|name of the output file to save | │ │ │ │ │ +|varfile| io |(output,required)|name of the output file to save | │ │ │ │ │ | | | |the variation image too.. For | │ │ │ │ │ | | | |supported file types see _P_l_u_g_i_n | │ │ │ │ │ |_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_t_y_p_e_:_ _2_d_i_m_a_g_e_/_i_o_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ |_ _ _ _ _w_ _ _|_ _u_i_n_t_ _i_n_ _[_1_,_ _i_n_f_)_ _|_ _ _ _ _ _ _ _ _ _ _ _ _1_ _ _ _ _|_f_i_l_t_e_r_ _w_i_d_t_h_ _p_a_r_a_m_e_t_e_r_ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ mmeeddiiaann │ │ │ │ │ 2D image median filter. Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ @@ -259,15 +259,15 @@ │ │ │ │ │ the given threshold will be ignored and at their loctions the output median and │ │ │ │ │ MAD are set to zero. The median intensity image is directly passed to the │ │ │ │ │ pipeline, the variation image is saved to a file given with the varfile │ │ │ │ │ parameter. Both output images have the same pixel type like the input image.. │ │ │ │ │ Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_ _ _NN_aa_mm_ee_ _|_ _ _ _ _ _ _ _ _ _ _TT_yy_pp_ee_ _ _ _ _|_ _ _ _ _ _ _ _DD_ee_ff_aa_uu_ll_tt_ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ | │ │ │ │ │ -|madfile| io |(required,output)|name of the output file to save | │ │ │ │ │ +|madfile| io |(output,required)|name of the output file to save | │ │ │ │ │ | | | |the median absolute deviation | │ │ │ │ │ | | | |image too.. For supported file | │ │ │ │ │ | | | |types see _P_l_u_g_i_n_ _t_y_p_e_:_ _2_d_i_m_a_g_e_/ | │ │ │ │ │ |_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_i_o_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ |thresh |double in [0, inf)| 0 |Intensity thresholding | │ │ │ │ │ | | | |parameter: Pixels with | │ │ │ │ │ | | | |intensities below this threshold| │ │ │ │ │ @@ -309,15 +309,15 @@ │ │ │ │ │ rreeggiioonnggrrooww │ │ │ │ │ Region growing startin from a seed until only along increasing gradients. │ │ │ │ │ Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_NN_aa_mm_ee_|_ _ _TT_yy_pp_ee_ _|_ _ _ _ _ _ _DD_ee_ff_aa_uu_ll_tt_ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ _ _ _ | │ │ │ │ │ | n |factory| 8n |Neighborhood shape. For supported plug-ins see| │ │ │ │ │ |_ _ _ _ _|_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_P_l_u_g_i_n_ _t_y_p_e_:_ _2_d_i_m_a_g_e_/_s_h_a_p_e_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ -|seed| io |(required,input)|seed image (bit valued). For supported file | │ │ │ │ │ +|seed| io |(input,required)|seed image (bit valued). For supported file | │ │ │ │ │ |_ _ _ _ _|_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_t_y_p_e_s_ _s_e_e_ _P_l_u_g_i_n_ _t_y_p_e_:_ _2_d_i_m_a_g_e_/_i_o_ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ ssaannddpp │ │ │ │ │ salt and pepper 3d filter. Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_ _NN_aa_mm_ee_ _|_ _ _ _ _ _ _ _ _ _TT_yy_pp_ee_ _ _ _ _|_DD_ee_ff_aa_uu_ll_tt_|_ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ | │ │ │ │ │ |_t_h_r_e_s_h_|_f_l_o_a_t_ _i_n_ _(_0_,_ _i_n_f_)_|_ _ _ _1_0_0_ _|_t_h_r_e_s_h_ _v_a_l_u_e_ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ |_ _ _ _w_ _ _|_ _i_n_t_ _i_n_ _[_1_,_ _i_n_f_)_ _|_ _ _ _ _1_ _ _|_f_i_l_t_e_r_ _w_i_d_t_h_ _p_a_r_a_m_e_t_e_r| │ │ │ │ │ @@ -373,22 +373,22 @@ │ │ │ │ │ |_NN_aa_mm_ee_|_ _ _TT_yy_pp_ee_ _|_ _ _ _ _ _ _DD_ee_ff_aa_uu_ll_tt_ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ _ _ _ | │ │ │ │ │ |_g_r_a_d_|_ _ _b_o_o_l_ _|_ _ _ _ _ _ _ _ _ _ _ _0_ _ _ _ _|_I_n_t_e_r_p_r_e_t_ _t_h_e_ _i_n_p_u_t_ _i_m_a_g_e_ _a_s_ _g_r_a_d_i_e_n_t_._ _ _ _ _ _ _ _ _ | │ │ │ │ │ |mark| bool | 0 |Mark the segmented watersheds with a special | │ │ │ │ │ |_ _ _ _ _|_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_g_r_a_y_ _s_c_a_l_e_ _v_a_l_u_e_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ | n |factory| [sphere:r=1] |Neighborhood for watershead region growing. For| │ │ │ │ │ | | | |supported plug-ins see _P_l_u_g_i_n_ _t_y_p_e_:_ _2_d_i_m_a_g_e_/ | │ │ │ │ │ |_ _ _ _ _|_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_s_h_a_p_e_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ -|seed|string |(required,input)|seed input image containing the lables for the | │ │ │ │ │ +|seed|string |(input,required)|seed input image containing the lables for the | │ │ │ │ │ |_ _ _ _ _|_ _ _ _ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_i_n_i_t_i_a_l_ _r_e_g_i_o_n_s_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ tteeee │ │ │ │ │ Save the input image to a file and also pass it through to the next filter. │ │ │ │ │ Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_NN_aa_mm_ee_|_TT_yy_pp_ee_|_ _ _ _ _ _ _ _DD_ee_ff_aa_uu_ll_tt_ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ _ _ _ | │ │ │ │ │ -|file| io |(required,output)|name of the output file to save the image too..| │ │ │ │ │ +|file| io |(output,required)|name of the output file to save the image too..| │ │ │ │ │ | | | |For supported file types see _P_l_u_g_i_n_ _t_y_p_e_: | │ │ │ │ │ |_ _ _ _ _|_ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_2_d_i_m_a_g_e_/_i_o_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ tthhiinnnniinngg │ │ │ │ │ Morphological thinning. Thinning until convergence will result in a 8-connected │ │ │ │ │ skeleton. Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_NN_aa_mm_ee_|_ _ _ _ _ _ _ _ _ _ _ _TT_yy_pp_ee_ _ _ _ _|_DD_ee_ff_aa_uu_ll_tt_|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ _ | │ │ │ │ │ @@ -413,15 +413,15 @@ │ │ │ │ │ |_ _ _t_ _|_ _ _ _ _ _ _ _f_l_o_a_t_ _ _ _|_ _ _ _ _0_ _ _|_T_h_r_e_s_h_o_l_d_ _f_o_r_ _p_i_x_e_l_s_ _n_o_t_ _t_o_ _t_a_k_e_ _i_n_t_o_ _a_c_c_o_u_n_t| │ │ │ │ │ |_ _ _w_ _|_i_n_t_ _i_n_ _[_1_,_ _i_n_f_)_|_ _ _ _ _1_ _ _|_h_a_l_f_ _f_i_l_t_e_r_ _w_i_d_t_h_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ ttrraannssffoorrmm │ │ │ │ │ Transform the input image with the given transformation.. Supported parameters │ │ │ │ │ are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_NN_aa_mm_ee_|_TT_yy_pp_ee_|_ _ _ _ _ _ _DD_ee_ff_aa_uu_ll_tt_ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ -|file| io |(required,input)|Name of the file containing the transformation..| │ │ │ │ │ +|file| io |(input,required)|Name of the file containing the transformation..| │ │ │ │ │ | | | |For supported file types see _P_l_u_g_i_n_ _t_y_p_e_: | │ │ │ │ │ |_ _ _ _ _|_ _ _ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _|_2_d_t_r_a_n_s_f_o_r_m_/_i_o_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | │ │ │ │ │ wwss │ │ │ │ │ basic watershead segmentation.. Supported parameters are: │ │ │ │ │ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ │ │ │ │ │ |_ _ _ _NN_aa_mm_ee_ _|_ _ _ _ _ _ _ _ _TT_yy_pp_ee_ _ _ _|_ _ _ _DD_ee_ff_aa_uu_ll_tt_ _ _|_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _DD_ee_ss_cc_rr_ii_pp_tt_ii_oo_nn_ _ _ _ _ _ _ | │ │ │ │ │ |evalgrad| bool | 0 |Set to 1 if the input image does not | │ │ │ ├── ./usr/share/doc/mia-2.4/userref/SecPlugintype2dstackfilter.html │ │ │ │ @@ -16,19 +16,19 @@ │ │ │ │
│ │ │ │
2D Stack morphological filter 'dilate'. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
shape | factory | 6n | structuring element. For supported plug-ins see Plugin type: 3dimage/shape |
│ │ │ │
│ │ │ │
2D Stack morphological filter 'erode'. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
shape | factory | 6n | structuring element. For supported plug-ins see Plugin type: 3dimage/shape |
│ │ │ │
│ │ │ │
Gauss 2D fifo filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
w | int in [1, inf) | 1 | filter width parameter (2*w+1) |
│ │ │ │
│ │ │ │ -
Stack Label filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
map | string | (required,input) | Mapfile to save label numbers that are joined |
n | factory | 4n | 2D neighbourhood shape to define connectedness. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │ +
Stack Label filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
map | string | (input,required) | Mapfile to save label numbers that are joined |
n | factory | 4n | 2D neighbourhood shape to define connectedness. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │
│ │ │ │
median 2D fifo filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
w | int in [1, inf) | 1 | filter width parameter |
│ │ │ │
│ │ │ │
Mean of Least Variance 2D stack image filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
w | int in [1, inf) | 1 | filter width parameter |
│ │ │ │
│ │ │ │
2D Stack morphological filter 'open'. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
shape | factory | 6n | structuring element. For supported plug-ins see Plugin type: 3dimage/shape |
│ │ │ │
│ │ │ │ -
Run a region-growing filter on a stack of images that comprise a 3D image. The region growing is based on class probabilities obtained from a c-means classification of the pixel intensities. One seed thresh is use to initiate a region, and another (lower) threshold is used to stop the region growing. By holding a number of 3D slices in the working memory to permit the region to grow "backwards " in the stack a Quasi-3D processing is achieved. However, with complex structures the region growing may not properly be segmented.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
class | int in [0, inf) | 2 | class to be segmented |
depth | int in [1, inf) | 10 | number of slices to keep during processing |
low | float in (0, 1] | 0.5 | low threshold for acceptance probability |
map | string | (required,input) | seed class map |
seed | float in (0, 1] | 0.98 | threshold for seed probability |
│ │ │ │ +
Run a region-growing filter on a stack of images that comprise a 3D image. The region growing is based on class probabilities obtained from a c-means classification of the pixel intensities. One seed thresh is use to initiate a region, and another (lower) threshold is used to stop the region growing. By holding a number of 3D slices in the working memory to permit the region to grow "backwards " in the stack a Quasi-3D processing is achieved. However, with complex structures the region growing may not properly be segmented.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
class | int in [0, inf) | 2 | class to be segmented |
depth | int in [1, inf) | 10 | number of slices to keep during processing |
low | float in (0, 1] | 0.5 | low threshold for acceptance probability |
map | string | (input,required) | seed class map |
seed | float in (0, 1] | 0.98 | threshold for seed probability |
│ │ │ │
│ │ │ │ mia-2dstackfilter │ │ │ │