--- /srv/reproducible-results/rbuild-debian/r-b-build.OiYYGDza/b1/seqan3_3.3.0+ds-2_amd64.changes +++ /srv/reproducible-results/rbuild-debian/r-b-build.OiYYGDza/b2/seqan3_3.3.0+ds-2_amd64.changes ├── Files │ @@ -1,3 +1,3 @@ │ │ 54e564d08360fa27145efaad484dda06 757700 libdevel optional libseqan3-dev_3.3.0+ds-2_all.deb │ - fb6c25c17da65e9718e93f4fdf854475 1933796 doc optional seqan3-doc_3.3.0+ds-2_all.deb │ + 8b29199e2c2c2a9a800afea26e09d7de 1933824 doc optional seqan3-doc_3.3.0+ds-2_all.deb ├── seqan3-doc_3.3.0+ds-2_all.deb │ ├── file list │ │ @@ -1,3 +1,3 @@ │ │ -rw-r--r-- 0 0 0 4 2024-08-15 10:18:02.000000 debian-binary │ │ --rw-r--r-- 0 0 0 61160 2024-08-15 10:18:02.000000 control.tar.xz │ │ --rw-r--r-- 0 0 0 1872444 2024-08-15 10:18:02.000000 data.tar.xz │ │ +-rw-r--r-- 0 0 0 61156 2024-08-15 10:18:02.000000 control.tar.xz │ │ +-rw-r--r-- 0 0 0 1872476 2024-08-15 10:18:02.000000 data.tar.xz │ ├── control.tar.xz │ │ ├── control.tar │ │ │ ├── ./control │ │ │ │ @@ -1,13 +1,13 @@ │ │ │ │ Package: seqan3-doc │ │ │ │ Source: seqan3 │ │ │ │ Version: 3.3.0+ds-2 │ │ │ │ Architecture: all │ │ │ │ Maintainer: Debian Med Packaging Team │ │ │ │ -Installed-Size: 39013 │ │ │ │ +Installed-Size: 39014 │ │ │ │ Depends: doxygen-awesome-css │ │ │ │ Suggests: libseqan3-dev │ │ │ │ Section: doc │ │ │ │ Priority: optional │ │ │ │ Multi-Arch: foreign │ │ │ │ Homepage: https://www.seqan.de/ │ │ │ │ Description: C++ library for the analysis of biological sequences v3 (documentation) │ │ │ ├── ./md5sums │ │ │ │ ├── ./md5sums │ │ │ │ │┄ Files differ │ ├── data.tar.xz │ │ ├── data.tar │ │ │ ├── file list │ │ │ │ @@ -2036,30 +2036,30 @@ │ │ │ │ -rw-r--r-- 0 root (0) root (0) 22806 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_13.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 59048 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_14.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 19674 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_15.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 221150 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_16.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 58778 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_17.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 5218 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_18.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 85877 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_19.js │ │ │ │ --rw-r--r-- 0 root (0) root (0) 194495 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_1a.js │ │ │ │ +-rw-r--r-- 0 root (0) root (0) 194663 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_1a.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 48558 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_1b.js │ │ │ │ --rw-r--r-- 0 root (0) root (0) 34032 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_1c.js │ │ │ │ +-rw-r--r-- 0 root (0) root (0) 34041 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_1c.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 17219 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_1d.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 32585 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_1e.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 5068 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_1f.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 539 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_2.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 774 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_20.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 1108 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_21.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 36255 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_22.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 933 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_3.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 283 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_4.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 172 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_5.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 178 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_6.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 120 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_7.js │ │ │ │ --rw-r--r-- 0 root (0) root (0) 103428 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_8.js │ │ │ │ +-rw-r--r-- 0 root (0) root (0) 103500 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_8.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 49637 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_9.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 113643 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_a.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 47899 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_b.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 68114 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_c.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 101817 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_d.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 37931 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_e.js │ │ │ │ -rw-r--r-- 0 root (0) root (0) 14669 2024-08-15 10:18:02.000000 ./usr/share/doc/libseqan3-dev/html/search/all_f.js │ │ │ ├── ./usr/share/doc/libseqan3-dev/html/search/all_10.js │ │ │ │ ├── js-beautify {} │ │ │ │ │ @@ -26,23 +26,23 @@ │ │ │ │ │ ['../interfaceseqan3_1_1sequence__file__input__traits.html#ab496e7d519510081ccd8b91525530156', 1, 'sequence_file_input_traits::id_alphabet()'], │ │ │ │ │ ['../interfaceseqan3_1_1structure__file__input__traits.html#ab496e7d519510081ccd8b91525530156', 1, 'structure_file_input_traits::id_alphabet()'] │ │ │ │ │ ]], │ │ │ │ │ ['id_5fcontainer_4', ['id_container', ['../interfaceseqan3_1_1sam__file__input__traits.html#a8e56a977570799e03022c905693ba82d', 1, 'sam_file_input_traits::id_container()'], │ │ │ │ │ ['../interfaceseqan3_1_1structure__file__input__traits.html#a8e56a977570799e03022c905693ba82d', 1, 'structure_file_input_traits::id_container()'], │ │ │ │ │ ['../interfaceseqan3_1_1sequence__file__input__traits.html#a8e56a977570799e03022c905693ba82d', 1, 'sequence_file_input_traits::id_container()'], │ │ │ │ │ ['../structseqan3_1_1structure__file__input__default__traits__rna.html#a290a096d91a60c9e353bcc33c9ce2c60', 1, 'seqan3::structure_file_input_default_traits_rna::id_container'], │ │ │ │ │ - ['../structseqan3_1_1sequence__file__input__default__traits__dna.html#a88c2886a52d184b1c98285691e971cea', 1, 'seqan3::sequence_file_input_default_traits_dna::id_container'], │ │ │ │ │ - ['../structseqan3_1_1sam__file__input__default__traits.html#a514e0393877b7922129bedac4df6ca7a', 1, 'seqan3::sam_file_input_default_traits::id_container'] │ │ │ │ │ + ['../structseqan3_1_1sam__file__input__default__traits.html#a514e0393877b7922129bedac4df6ca7a', 1, 'seqan3::sam_file_input_default_traits::id_container'], │ │ │ │ │ + ['../structseqan3_1_1sequence__file__input__default__traits__dna.html#a88c2886a52d184b1c98285691e971cea', 1, 'seqan3::sequence_file_input_default_traits_dna::id_container'] │ │ │ │ │ ]], │ │ │ │ │ ['id_5ftype_5', ['id_type', ['../classseqan3_1_1sam__file__input.html#a78a83a70023331162fc062523d93fa19', 1, 'seqan3::sam_file_input::id_type'], │ │ │ │ │ ['../classseqan3_1_1sequence__file__input.html#a7787a02e8552108e0fd45caf23209b3e', 1, 'seqan3::sequence_file_input::id_type'], │ │ │ │ │ ['../classseqan3_1_1structure__file__input.html#a4086111b3ab7ff9d4b7ea067c80359eb', 1, 'seqan3::structure_file_input::id_type'] │ │ │ │ │ ]], │ │ │ │ │ - ['ifstream_6', ['ifstream', ['https://en.cppreference.com/w/cpp/io/basic_ifstream.html', 0, 'std::ifstream'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ifstream/basic_ifstream.html', 0, 'std::ifstream::ifstream()'] │ │ │ │ │ + ['ifstream_6', ['ifstream', ['https://en.cppreference.com/w/cpp/io/basic_ifstream/basic_ifstream.html', 0, 'std::ifstream::ifstream()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ifstream.html', 0, 'std::ifstream'] │ │ │ │ │ ]], │ │ │ │ │ ['ignore_7', ['ignore', ['https://en.cppreference.com/w/cpp/io/basic_istream/ignore.html', 0, 'std::wstringstream::ignore()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/ignore.html', 0, 'std::wistringstream::ignore()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/ignore.html', 0, 'std::wistream::ignore()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/ignore.html', 0, 'std::wiostream::ignore()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/ignore.html', 0, 'std::wifstream::ignore()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/ignore.html', 0, 'std::wfstream::ignore()'], │ │ │ │ │ @@ -204,19 +204,19 @@ │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::basic_fstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::wifstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::wiostream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::wistream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::basic_ios::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::ofstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::istrstream::init()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::basic_ifstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::istringstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::istream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::iostream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::ifstream::init()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::basic_ifstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::fstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::basic_stringstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::basic_ostringstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::basic_ostream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::basic_ofstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::basic_istringstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::basic_istream::init()'], │ │ │ │ │ @@ -250,22 +250,22 @@ │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::wostringstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/ios_base/Init.html', 0, 'std::basic_fstream::Init'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/init.html', 0, 'std::wstringstream::init()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/ios_base/Init.html', 0, 'std::basic_ifstream::Init'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/ios_base/Init.html', 0, 'std::wstringstream::Init'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/ios_base/Init.html', 0, 'std::wifstream::Init'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/ios_base/Init.html', 0, 'std::wostringstream::Init'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/ios_base/Init.html', 0, 'std::wostream::Init'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/ios_base/Init.html', 0, 'std::wistream::Init'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/ios_base/Init.html', 0, 'std::wistringstream::Init'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/ios_base/Init.html', 0, 'std::wofstream::Init'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/ios_base/Init.html', 0, 'std::wofstream::Init'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/ios_base/Init.html', 0, 'std::wostream::Init'] │ │ │ │ │ ]], │ │ │ │ │ ['initialisation_61', ['Initialisation', ['../howto_porting.html#autotoc_md73', 1, '']]], │ │ │ │ │ - ['initializer_5flist_62', ['initializer_list', ['https://en.cppreference.com/w/cpp/header/initializer_list.html', 0, '(Global Namespace)'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/utility/initializer_list.html', 0, 'std::initializer_list'], │ │ │ │ │ + ['initializer_5flist_62', ['initializer_list', ['https://en.cppreference.com/w/cpp/utility/initializer_list.html', 0, 'std::initializer_list'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/header/initializer_list.html', 0, '(Global Namespace)'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/utility/initializer_list/initializer_list.html', 0, 'std::initializer_list::initializer_list()'] │ │ │ │ │ ]], │ │ │ │ │ ['inner_5fallocator_63', ['inner_allocator', ['https://en.cppreference.com/w/cpp/memory/scoped_allocator_adaptor/inner_allocator.html', 0, 'std::scoped_allocator_adaptor']]], │ │ │ │ │ ['inner_5fproduct_64', ['inner_product', ['https://en.cppreference.com/w/cpp/algorithm/inner_product.html', 0, 'std']]], │ │ │ │ │ ['inplace_5fmerge_65', ['inplace_merge', ['https://en.cppreference.com/w/cpp/algorithm/inplace_merge.html', 0, 'std']]], │ │ │ │ │ ['input_66', ['Step 2 - Reading the input', ['../tutorial_read_mapper.html#autotoc_md217', 1, '']]], │ │ │ │ │ ['input_20and_20output_67', ['Sequence File Input and Output', ['../tutorial_sequence_file.html', 1, '']]], │ │ │ │ │ @@ -380,16 +380,16 @@ │ │ │ │ │ ['../classseqan3_1_1interleaved__bloom__filter.html#a95ed4f6b9d825f772e8d56aaf3aae36c', 1, 'seqan3::interleaved_bloom_filter::interleaved_bloom_filter(interleaved_bloom_filter &&)=default'], │ │ │ │ │ ['../classseqan3_1_1interleaved__bloom__filter.html#a33244938f76c17ccad12713280413e22', 1, 'seqan3::interleaved_bloom_filter::interleaved_bloom_filter(interleaved_bloom_filter< data_layout::compressed > const &ibf)'], │ │ │ │ │ ['../classseqan3_1_1interleaved__bloom__filter.html#a1cf00fe54119fad274c4d56bc46aa504', 1, 'seqan3::interleaved_bloom_filter::interleaved_bloom_filter(interleaved_bloom_filter< data_layout::uncompressed > const &ibf)'], │ │ │ │ │ ['../classseqan3_1_1interleaved__bloom__filter.html#a7a1fcd04be5c9836762785fd33944a7b', 1, 'seqan3::interleaved_bloom_filter::interleaved_bloom_filter(seqan3::bin_count bins_, seqan3::bin_size size, seqan3::hash_function_count funs=seqan3::hash_function_count{2u})'], │ │ │ │ │ ['../classseqan3_1_1interleaved__bloom__filter.html', 1, 'seqan3::interleaved_bloom_filter< data_layout_mode_ >'] │ │ │ │ │ ]], │ │ │ │ │ ['interleaved_5fbloom_5ffilter_2ehpp_105', ['interleaved_bloom_filter.hpp', ['../interleaved__bloom__filter_8hpp.html', 1, '']]], │ │ │ │ │ - ['intern_5ftype_106', ['intern_type', ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt_utf16::intern_type'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt_byname::intern_type'], │ │ │ │ │ + ['intern_5ftype_106', ['intern_type', ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt_byname::intern_type'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt_utf16::intern_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt::intern_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt_utf8::intern_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt_utf8_utf16::intern_type'] │ │ │ │ │ ]], │ │ │ │ │ ['internal_107', ['internal', ['https://en.cppreference.com/w/cpp/io/manip/left.html', 0, 'std']]], │ │ │ │ │ ['intervals_108', ['intervals', ['https://en.cppreference.com/w/cpp/numeric/random/piecewise_linear_distribution/params.html', 0, 'std::piecewise_linear_distribution::intervals()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/numeric/random/piecewise_constant_distribution/params.html', 0, 'std::piecewise_constant_distribution::intervals()'] │ │ │ │ │ @@ -399,16 +399,16 @@ │ │ │ │ │ ['into_20seqan_111', ['Some general notes that might help to dive into SeqAn', ['../tutorial_first_example.html#autotoc_md116', 1, '']]], │ │ │ │ │ ['intptr_5ft_112', ['intptr_t', ['https://en.cppreference.com/w/cpp/types/integer.html', 0, 'std']]], │ │ │ │ │ ['introduction_113', ['introduction', ['../tutorial_pairwise_alignment.html#autotoc_md176', 1, 'Introduction'], │ │ │ │ │ ['../tutorial_index_search.html#autotoc_md186', 1, 'Introduction'], │ │ │ │ │ ['../tutorial_sam_file.html#autotoc_md197', 1, 'Introduction'], │ │ │ │ │ ['../group__alphabet.html#autotoc_md24', 1, 'Introduction'], │ │ │ │ │ ['../group__io__sam__file.html#autotoc_md39', 1, 'Introduction'], │ │ │ │ │ - ['../group__search__configuration.html#search_configuration_section_introduction', 1, 'Introduction'], │ │ │ │ │ ['../tutorial_read_mapper.html#autotoc_md212', 1, 'Introduction'], │ │ │ │ │ + ['../group__search__configuration.html#search_configuration_section_introduction', 1, 'Introduction'], │ │ │ │ │ ['../tutorial_alphabets.html#autotoc_md133', 1, 'Introduction'] │ │ │ │ │ ]], │ │ │ │ │ ['introduction_20to_20pairwise_20alignment_114', ['Introduction to pairwise alignment', ['../group__alignment__pairwise.html#autotoc_md12', 1, '']]], │ │ │ │ │ ['invalid_20configurations_115', ['Invalid configurations', ['../tutorial_pairwise_alignment.html#autotoc_md184', 1, '']]], │ │ │ │ │ ['invalid_5falignment_5fconfiguration_116', ['invalid_alignment_configuration', ['../classseqan3_1_1invalid__alignment__configuration.html#abe1298b2be89e57635572caec16d0e9c', 1, 'seqan3::invalid_alignment_configuration::invalid_alignment_configuration()'], │ │ │ │ │ ['../classseqan3_1_1invalid__alignment__configuration.html', 1, 'seqan3::invalid_alignment_configuration'] │ │ │ │ │ ]], │ │ │ ├── ./usr/share/doc/libseqan3-dev/html/search/all_1a.js │ │ │ │ ├── js-beautify {} │ │ │ │ │ @@ -51,43 +51,43 @@ │ │ │ │ │ ['../classseqan3_1_1sam__file__input.html#a8df4871eefacb6b7cd5eed41fd509858', 1, 'seqan3::sam_file_input::sam_file_input()=delete'] │ │ │ │ │ ]], │ │ │ │ │ ['sam_5ffile_5finput_5fdefault_5ftraits_18', ['sam_file_input_default_traits', ['../structseqan3_1_1sam__file__input__default__traits.html', 1, 'seqan3']]], │ │ │ │ │ ['sam_5ffile_5finput_5fformat_19', ['sam_file_input_format', ['../classseqan3_1_1sam__file__input__format.html', 1, 'seqan3']]], │ │ │ │ │ ['sam_5ffile_5finput_5foptions_20', ['sam_file_input_options', ['../structseqan3_1_1sam__file__input__options.html', 1, 'seqan3']]], │ │ │ │ │ ['sam_5ffile_5finput_5foptions_3c_20typename_20traits_5ftype_3a_3asequence_5flegal_5falphabet_20_3e_21', ['sam_file_input_options< typename traits_type::sequence_legal_alphabet >', ['../structseqan3_1_1sam__file__input__options.html', 1, 'seqan3']]], │ │ │ │ │ ['sam_5ffile_5finput_5ftraits_22', ['sam_file_input_traits', ['../interfaceseqan3_1_1sam__file__input__traits.html', 1, '']]], │ │ │ │ │ - ['sam_5ffile_5foutput_23', ['sam_file_output', ['../classseqan3_1_1sam__file__output.html#afc79827be66dc11fe25f5e7a67f92c99', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &, file_format const &) -> sam_file_output< typename sam_file_output<>::selected_field_ids, type_list< file_format >, ref_info_not_given >'], │ │ │ │ │ - ['../classseqan3_1_1sam__file__output.html#a6e6b84c86826f69b6e8d5d6ac8af5541', 1, 'seqan3::sam_file_output::sam_file_output(std::filesystem::path, selected_field_ids const &) -> sam_file_output< selected_field_ids, typename sam_file_output<>::valid_formats, ref_info_not_given >'], │ │ │ │ │ + ['sam_5ffile_5foutput_23', ['sam_file_output', ['../classseqan3_1_1sam__file__output.html#aced58fe82b4335f06de9064bc71f2f45', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &&stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})'], │ │ │ │ │ + ['../classseqan3_1_1sam__file__output.html#af11b62d2791f8da52f44cf686e6579c0', 1, 'seqan3::sam_file_output::sam_file_output(std::filesystem::path const &, ref_ids_type &&, ref_lengths_type &&, selected_field_ids const &) -> sam_file_output< selected_field_ids, typename sam_file_output<>::valid_formats, std::remove_reference_t< ref_ids_type > >'], │ │ │ │ │ + ['../classseqan3_1_1sam__file__output.html#afc79827be66dc11fe25f5e7a67f92c99', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &, file_format const &) -> sam_file_output< typename sam_file_output<>::selected_field_ids, type_list< file_format >, ref_info_not_given >'], │ │ │ │ │ ['../classseqan3_1_1sam__file__output.html#aa69f7d96189a3a3ac6cc0b233ec82a86', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &&, file_format const &) -> sam_file_output< typename sam_file_output<>::selected_field_ids, type_list< file_format >, ref_info_not_given >'], │ │ │ │ │ ['../classseqan3_1_1sam__file__output.html#ad88a4de1ce5c46aae81ac07ad1e8c6c0', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &, file_format const &, selected_field_ids const &) -> sam_file_output< selected_field_ids, type_list< file_format >, ref_info_not_given >'], │ │ │ │ │ ['../classseqan3_1_1sam__file__output.html#adad77cb637aa9a1e888a5eec9ab3322d', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &&, file_format const &, selected_field_ids const &) -> sam_file_output< selected_field_ids, type_list< file_format >, ref_info_not_given >'], │ │ │ │ │ + ['../classseqan3_1_1sam__file__output.html#a6e6b84c86826f69b6e8d5d6ac8af5541', 1, 'seqan3::sam_file_output::sam_file_output(std::filesystem::path, selected_field_ids const &) -> sam_file_output< selected_field_ids, typename sam_file_output<>::valid_formats, ref_info_not_given >'], │ │ │ │ │ ['../classseqan3_1_1sam__file__output.html#ab6e19fdf51322d9ac5824bb9f5b70bbc', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &&stream, ref_ids_type_ &&ref_ids, ref_lengths_type &&ref_lengths, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})'], │ │ │ │ │ ['../classseqan3_1_1sam__file__output.html#a65b9841105266a2dfef9daafd1b109f4', 1, 'seqan3::sam_file_output::sam_file_output(std::filesystem::path const &filename, ref_ids_type_ &&ref_ids, ref_lengths_type &&ref_lengths, selected_field_ids const &fields_tag=selected_field_ids{})'], │ │ │ │ │ - ['../classseqan3_1_1sam__file__output.html#aced58fe82b4335f06de9064bc71f2f45', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &&stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})'], │ │ │ │ │ + ['../classseqan3_1_1sam__file__output.html#a113b0735dfce27d6ac095f4bdf046148', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &, ref_ids_type &&, ref_lengths_type &&, file_format const &, selected_field_ids const &) -> sam_file_output< selected_field_ids, type_list< file_format >, std::remove_reference_t< ref_ids_type > >'], │ │ │ │ │ ['../classseqan3_1_1sam__file__output.html#a9acf2655ed86ce8f52577d2891f19d0c', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})'], │ │ │ │ │ ['../classseqan3_1_1sam__file__output.html#aab04103f3a2eae510f6500bd7823fc47', 1, 'seqan3::sam_file_output::sam_file_output(std::filesystem::path filename, selected_field_ids const &fields_tag=selected_field_ids{})'], │ │ │ │ │ ['../classseqan3_1_1sam__file__output.html#ac74960d2135550f9f9337bae1f782cc1', 1, 'seqan3::sam_file_output::sam_file_output(sam_file_output &&)=default'], │ │ │ │ │ - ['../classseqan3_1_1sam__file__output.html#a23c49af0c3ea9326354b01d830fb6d1f', 1, 'seqan3::sam_file_output::sam_file_output(sam_file_output const &)=delete'], │ │ │ │ │ - ['../classseqan3_1_1sam__file__output.html#a24f28077041840769a5d287581d49e94', 1, 'seqan3::sam_file_output::sam_file_output()=delete'], │ │ │ │ │ - ['../classseqan3_1_1sam__file__output.html', 1, 'seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >'], │ │ │ │ │ ['../classseqan3_1_1sam__file__output.html#a11bf92fd2ae7fdd7ee91186b5cc9169c', 1, 'seqan3::sam_file_output::sam_file_output(std::filesystem::path const &, ref_ids_type &&, ref_lengths_type &&) -> sam_file_output< typename sam_file_output<>::selected_field_ids, typename sam_file_output<>::valid_formats, std::remove_reference_t< ref_ids_type > >'], │ │ │ │ │ ['../classseqan3_1_1sam__file__output.html#a944fd9481b8297e63f8bfca4adf8b938', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &&, ref_ids_type &&, ref_lengths_type &&, file_format const &, selected_field_ids const &) -> sam_file_output< selected_field_ids, type_list< file_format >, std::remove_reference_t< ref_ids_type > >'], │ │ │ │ │ - ['../classseqan3_1_1sam__file__output.html#a113b0735dfce27d6ac095f4bdf046148', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &, ref_ids_type &&, ref_lengths_type &&, file_format const &, selected_field_ids const &) -> sam_file_output< selected_field_ids, type_list< file_format >, std::remove_reference_t< ref_ids_type > >'], │ │ │ │ │ ['../classseqan3_1_1sam__file__output.html#a76c052aec39abaff3af022a1bb8f039d', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &&, ref_ids_type &&, ref_lengths_type &&, file_format const &) -> sam_file_output< typename sam_file_output<>::selected_field_ids, type_list< file_format >, std::remove_reference_t< ref_ids_type > >'], │ │ │ │ │ ['../classseqan3_1_1sam__file__output.html#a01e86819d4ebd7a35149d541f0d77dcd', 1, 'seqan3::sam_file_output::sam_file_output(stream_type &, ref_ids_type &&, ref_lengths_type &&, file_format const &) -> sam_file_output< typename sam_file_output<>::selected_field_ids, type_list< file_format >, std::remove_reference_t< ref_ids_type > >'], │ │ │ │ │ - ['../classseqan3_1_1sam__file__output.html#af11b62d2791f8da52f44cf686e6579c0', 1, 'seqan3::sam_file_output::sam_file_output(std::filesystem::path const &, ref_ids_type &&, ref_lengths_type &&, selected_field_ids const &) -> sam_file_output< selected_field_ids, typename sam_file_output<>::valid_formats, std::remove_reference_t< ref_ids_type > >'] │ │ │ │ │ + ['../classseqan3_1_1sam__file__output.html#a23c49af0c3ea9326354b01d830fb6d1f', 1, 'seqan3::sam_file_output::sam_file_output(sam_file_output const &)=delete'], │ │ │ │ │ + ['../classseqan3_1_1sam__file__output.html#a24f28077041840769a5d287581d49e94', 1, 'seqan3::sam_file_output::sam_file_output()=delete'], │ │ │ │ │ + ['../classseqan3_1_1sam__file__output.html', 1, 'seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >'] │ │ │ │ │ ]], │ │ │ │ │ ['sam_5ffile_5foutput_5fformat_24', ['sam_file_output_format', ['../classseqan3_1_1sam__file__output__format.html', 1, 'seqan3']]], │ │ │ │ │ ['sam_5ffile_5foutput_5foptions_25', ['sam_file_output_options', ['../structseqan3_1_1sam__file__output__options.html', 1, 'seqan3']]], │ │ │ │ │ ['sam_5ffile_5fprogram_5finfo_5ft_26', ['sam_file_program_info_t', ['../structseqan3_1_1sam__file__program__info__t.html', 1, 'seqan3']]], │ │ │ │ │ ['sam_5fflag_27', ['sam_flag', ['../group__io__sam__file.html#ga12cf4f15e81e65c02a1a5899b75ca962', 1, 'seqan3']]], │ │ │ │ │ ['sam_5fflag_2ehpp_28', ['sam_flag.hpp', ['../sam__flag_8hpp.html', 1, '']]], │ │ │ │ │ - ['sam_5frecord_29', ['sam_record', ['../classseqan3_1_1sam__record.html#a90bbca3b71fa4dfe14a2af8912e59f12', 1, 'seqan3::sam_record::sam_record(sam_record &&)=default'], │ │ │ │ │ + ['sam_5frecord_29', ['sam_record', ['../classseqan3_1_1sam__record.html#a8d32a79396e78c3e0622bd865fc7bad1', 1, 'seqan3::sam_record::sam_record()=default'], │ │ │ │ │ ['../classseqan3_1_1sam__record.html#a64bf707b5d361dabd06ed5b8b8530978', 1, 'seqan3::sam_record::sam_record(sam_record const &)=default'], │ │ │ │ │ - ['../classseqan3_1_1sam__record.html#a8d32a79396e78c3e0622bd865fc7bad1', 1, 'seqan3::sam_record::sam_record()=default'], │ │ │ │ │ + ['../classseqan3_1_1sam__record.html#a90bbca3b71fa4dfe14a2af8912e59f12', 1, 'seqan3::sam_record::sam_record(sam_record &&)=default'], │ │ │ │ │ ['../classseqan3_1_1sam__record.html', 1, 'seqan3::sam_record< field_types, field_ids >'] │ │ │ │ │ ]], │ │ │ │ │ ['sam_5frecord_3c_20detail_3a_3aselect_5ftypes_5fwith_5fids_5ft_3c_20field_5ftypes_2c_20field_5fids_2c_20selected_5ffield_5fids_20_3e_2c_20selected_5ffield_5fids_20_3e_30', ['sam_record< detail::select_types_with_ids_t< field_types, field_ids, selected_field_ids >, selected_field_ids >', ['../classseqan3_1_1sam__record.html', 1, 'seqan3']]], │ │ │ │ │ ['sam_5frequire_5fheader_31', ['sam_require_header', ['../structseqan3_1_1sam__file__output__options.html#a6fe52f5b4619b9c225d974200cd939ce', 1, 'seqan3::sam_file_output_options']]], │ │ │ │ │ ['sam_5ftag_5fdictionary_32', ['sam_tag_dictionary', ['../classseqan3_1_1sam__tag__dictionary.html', 1, 'seqan3']]], │ │ │ │ │ ['sam_5ftag_5fdictionary_2ehpp_33', ['sam_tag_dictionary.hpp', ['../sam__tag__dictionary_8hpp.html', 1, '']]], │ │ │ │ │ ['sam_5ftag_5ftype_34', ['sam_tag_type', ['../structseqan3_1_1sam__tag__type.html', 1, 'seqan3']]], │ │ │ │ │ @@ -130,53 +130,53 @@ │ │ │ │ │ ['../classseqan3_1_1alignment__result.html#a9c58ae47bec7d6514db3d0a891006e0c', 1, 'seqan3::alignment_result::score()'], │ │ │ │ │ ['../classseqan3_1_1scoring__scheme__base.html#aedb2954149d0627ec13bb8c94b74b184', 1, 'seqan3::scoring_scheme_base::score(alph1_t const alph1, alph2_t const alph2) noexcept'], │ │ │ │ │ ['../classseqan3_1_1scoring__scheme__base.html#a1afda86ea14f3b4566b0f920bd47cc56', 1, 'seqan3::scoring_scheme_base::score(alph1_t const alph1, alph2_t const alph2) const noexcept'], │ │ │ │ │ ['../interfaceseqan3_1_1scoring__scheme__for.html#a06d5cb294edbd9d523c61033c18d0ad3', 1, 'scoring_scheme_for::score()'] │ │ │ │ │ ]], │ │ │ │ │ ['score_20matrix_20example_53', ['Score matrix example', ['../classseqan3_1_1detail_1_1debug__matrix.html#autotoc_md8', 1, '']]], │ │ │ │ │ ['score_5fmatrix_5fsingle_5fcolumn_2ehpp_54', ['score_matrix_single_column.hpp', ['../score__matrix__single__column_8hpp.html', 1, '']]], │ │ │ │ │ - ['score_5ftype_55', ['score_type', ['../classseqan3_1_1align__cfg_1_1score__type.html#a95ca2a1fcc5649ffb8b79f27639f5614', 1, 'seqan3::align_cfg::score_type::score_type()'], │ │ │ │ │ + ['score_5ftype_55', ['score_type', ['../classseqan3_1_1align__cfg_1_1score__type.html', 1, 'seqan3::align_cfg::score_type< score_t >'], │ │ │ │ │ ['../classseqan3_1_1scoring__scheme__base.html#aecd7746d41524373d9b6b2a6ee72ebf7', 1, 'seqan3::scoring_scheme_base::score_type'], │ │ │ │ │ + ['../classseqan3_1_1align__cfg_1_1score__type.html#a95ca2a1fcc5649ffb8b79f27639f5614', 1, 'seqan3::align_cfg::score_type::score_type()=default'], │ │ │ │ │ ['../classseqan3_1_1align__cfg_1_1score__type.html#a3f69727e19a3c881d54273cd29bbb617', 1, 'seqan3::align_cfg::score_type::score_type(score_type const &)=default'], │ │ │ │ │ ['../classseqan3_1_1align__cfg_1_1score__type.html#a54f9f2c0aa8af5fa9494042ece9ca072', 1, 'seqan3::align_cfg::score_type::score_type(score_type &&)=default'], │ │ │ │ │ - ['../interfaceseqan3_1_1scoring__scheme__for.html#a8775c210c0fb0e10303fd02fefe3714b', 1, 'scoring_scheme_for::score_type()'], │ │ │ │ │ - ['../classseqan3_1_1align__cfg_1_1score__type.html', 1, 'seqan3::align_cfg::score_type< score_t >'] │ │ │ │ │ + ['../interfaceseqan3_1_1scoring__scheme__for.html#a8775c210c0fb0e10303fd02fefe3714b', 1, 'scoring_scheme_for::score_type()'] │ │ │ │ │ ]], │ │ │ │ │ ['scoring_56', ['Scoring', ['../group__alignment__scoring.html', 1, '']]], │ │ │ │ │ ['scoring_20and_20gap_20schemes_57', ['Using scoring and gap schemes', ['../group__alignment__pairwise.html#autotoc_md15', 1, '']]], │ │ │ │ │ ['scoring_20gaps_58', ['Scoring gaps', ['../group__alignment__pairwise.html#autotoc_md17', 1, '']]], │ │ │ │ │ ['scoring_20scheme_59', ['Define a custom scoring scheme', ['../cookbook.html#autotoc_md61', 1, '']]], │ │ │ │ │ ['scoring_20schemes_20and_20gap_20schemes_60', ['Scoring schemes and gap schemes', ['../tutorial_pairwise_alignment.html#autotoc_md180', 1, '']]], │ │ │ │ │ ['scoring_20two_20letters_61', ['Scoring two letters', ['../group__alignment__pairwise.html#autotoc_md16', 1, '']]], │ │ │ │ │ - ['scoring_5fscheme_62', ['scoring_scheme', ['../classseqan3_1_1align__cfg_1_1scoring__scheme.html#ad43c8f0a50de5e767c0a260938423abd', 1, 'seqan3::align_cfg::scoring_scheme::scoring_scheme()'], │ │ │ │ │ - ['../classseqan3_1_1align__cfg_1_1scoring__scheme.html', 1, 'seqan3::align_cfg::scoring_scheme< scoring_scheme_t >'], │ │ │ │ │ + ['scoring_5fscheme_62', ['scoring_scheme', ['../classseqan3_1_1align__cfg_1_1scoring__scheme.html', 1, 'seqan3::align_cfg::scoring_scheme< scoring_scheme_t >'], │ │ │ │ │ ['../classseqan3_1_1align__cfg_1_1scoring__scheme.html#ab4f0b41bee83b0ae63b023eb007edcf7', 1, 'seqan3::align_cfg::scoring_scheme::scoring_scheme()=default'], │ │ │ │ │ ['../classseqan3_1_1align__cfg_1_1scoring__scheme.html#ac5e31cb138b0368a92746d2c8ca7307f', 1, 'seqan3::align_cfg::scoring_scheme::scoring_scheme(scoring_scheme const &)=default'], │ │ │ │ │ + ['../classseqan3_1_1align__cfg_1_1scoring__scheme.html#ad43c8f0a50de5e767c0a260938423abd', 1, 'seqan3::align_cfg::scoring_scheme::scoring_scheme(scoring_scheme &&)=default'], │ │ │ │ │ ['../classseqan3_1_1align__cfg_1_1scoring__scheme.html#a11d09d10278cc51c0bf0701a3c1caf2f', 1, 'seqan3::align_cfg::scoring_scheme::scoring_scheme(scoring_scheme_t scheme)'], │ │ │ │ │ ['../classseqan3_1_1align__cfg_1_1scoring__scheme.html#a1ec2c51cf5699c3805b0d57dc3a6daab', 1, 'seqan3::align_cfg::scoring_scheme::scoring_scheme(scheme_t) -> scoring_scheme< std::remove_cvref_t< scheme_t > >'] │ │ │ │ │ ]], │ │ │ │ │ - ['scoring_5fscheme_5fbase_63', ['scoring_scheme_base', ['../classseqan3_1_1scoring__scheme__base.html#a4dbed2e1f50a95666ef57568a8c81caf', 1, 'seqan3::scoring_scheme_base::scoring_scheme_base(scoring_scheme_base const &) noexcept=default'], │ │ │ │ │ + ['scoring_5fscheme_5fbase_63', ['scoring_scheme_base', ['../classseqan3_1_1scoring__scheme__base.html#a1426c3887da7591875e81983db9c6189', 1, 'seqan3::scoring_scheme_base::scoring_scheme_base() noexcept'], │ │ │ │ │ ['../classseqan3_1_1scoring__scheme__base.html#ad1b5382fb4519befb429ef3ebe65c841', 1, 'seqan3::scoring_scheme_base::scoring_scheme_base(matrix_type const &matrix) noexcept'], │ │ │ │ │ + ['../classseqan3_1_1scoring__scheme__base.html#a4dbed2e1f50a95666ef57568a8c81caf', 1, 'seqan3::scoring_scheme_base::scoring_scheme_base(scoring_scheme_base const &) noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1scoring__scheme__base.html#ae725449aa4d2b1ce2e2950d483c3c0ea', 1, 'seqan3::scoring_scheme_base::scoring_scheme_base(match_score< score_arg_t > const ms, mismatch_score< score_arg_t > const mms)'], │ │ │ │ │ - ['../classseqan3_1_1scoring__scheme__base.html', 1, 'seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >'], │ │ │ │ │ - ['../classseqan3_1_1scoring__scheme__base.html#a1426c3887da7591875e81983db9c6189', 1, 'seqan3::scoring_scheme_base::scoring_scheme_base() noexcept'], │ │ │ │ │ - ['../classseqan3_1_1scoring__scheme__base.html#a16f251498dbcf0f0cc2e3553061417f6', 1, 'seqan3::scoring_scheme_base::scoring_scheme_base(scoring_scheme_base &&) noexcept=default'] │ │ │ │ │ + ['../classseqan3_1_1scoring__scheme__base.html#a16f251498dbcf0f0cc2e3553061417f6', 1, 'seqan3::scoring_scheme_base::scoring_scheme_base(scoring_scheme_base &&) noexcept=default'], │ │ │ │ │ + ['../classseqan3_1_1scoring__scheme__base.html', 1, 'seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >'] │ │ │ │ │ ]], │ │ │ │ │ ['scoring_5fscheme_5fbase_2ehpp_64', ['scoring_scheme_base.hpp', ['../scoring__scheme__base_8hpp.html', 1, '']]], │ │ │ │ │ ['scoring_5fscheme_5fbase_3c_20aminoacid_5fscoring_5fscheme_3c_20int8_5ft_20_3e_2c_20aa27_2c_20int8_5ft_20_3e_65', ['scoring_scheme_base< aminoacid_scoring_scheme< int8_t >, aa27, int8_t >', ['../classseqan3_1_1scoring__scheme__base.html', 1, 'seqan3']]], │ │ │ │ │ ['scoring_5fscheme_5fbase_3c_20nucleotide_5fscoring_5fscheme_3c_20int8_5ft_20_3e_2c_20dna15_2c_20int8_5ft_20_3e_66', ['scoring_scheme_base< nucleotide_scoring_scheme< int8_t >, dna15, int8_t >', ['../classseqan3_1_1scoring__scheme__base.html', 1, 'seqan3']]], │ │ │ │ │ ['scoring_5fscheme_5fconcept_2ehpp_67', ['scoring_scheme_concept.hpp', ['../scoring__scheme__concept_8hpp.html', 1, '']]], │ │ │ │ │ ['scoring_5fscheme_5ffor_68', ['scoring_scheme_for', ['../interfaceseqan3_1_1scoring__scheme__for.html', 1, '']]], │ │ │ │ │ ['scoring_5fscheme_5fpolicy_2ehpp_69', ['scoring_scheme_policy.hpp', ['../scoring__scheme__policy_8hpp.html', 1, '']]], │ │ │ │ │ ['sdsl_5fwt_5findex_5ftype_70', ['sdsl_wt_index_type', ['../group__search__fm__index.html#gab4f4542af9dfbd870ec4b02b935d47ae', 1, 'seqan3']]], │ │ │ │ │ ['search_71', ['search', ['../tutorial_index_search.html#autotoc_md190', 1, 'Search'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/algorithm/search.html', 0, 'std::search()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/experimental/search.html', 0, 'std::experimental::search()'], │ │ │ │ │ + ['../group__search.html', 1, 'Search'], │ │ │ │ │ ['../group__search.html#ga8e651fc603d3e499f9bee7bb95580fab', 1, 'seqan3::search()'], │ │ │ │ │ - ['../group__search.html', 1, 'Search'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/experimental/search.html', 0, 'std::experimental::search()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/algorithm/search.html', 0, 'std::search()'] │ │ │ │ │ ]], │ │ │ │ │ ['search_20algorithm_3a_20seqan3_3a_3asearch_72', ['Search algorithm: seqan3::search', ['../group__search.html#autotoc_md40', 1, '']]], │ │ │ │ │ ['search_20configurations_73', ['Overview on search configurations', ['../group__search__configuration.html#search_configuration_section_overview', 1, '']]], │ │ │ │ │ ['search_20module_74', ['Search module', ['../about_citing.html#autotoc_md48', 1, '']]], │ │ │ │ │ ['search_20output_75', ['Controlling the search output', ['../tutorial_index_search.html#autotoc_md195', 1, '']]], │ │ │ │ │ ['search_2ehpp_76', ['search.hpp', ['../search_8hpp.html', 1, '']]], │ │ │ │ │ ['search_2fall_2ehpp_77', ['all.hpp', ['../search_2all_8hpp.html', 1, '']]], │ │ │ │ │ @@ -187,185 +187,185 @@ │ │ │ │ │ ['search_2ffm_5findex_2fall_2ehpp_82', ['all.hpp', ['../search_2fm__index_2all_8hpp.html', 1, '']]], │ │ │ │ │ ['search_2ffm_5findex_2fconcept_2ehpp_83', ['concept.hpp', ['../search_2fm__index_2concept_8hpp.html', 1, '']]], │ │ │ │ │ ['search_2fkmer_5findex_2fall_2ehpp_84', ['all.hpp', ['../search_2kmer__index_2all_8hpp.html', 1, '']]], │ │ │ │ │ ['search_2fviews_2fall_2ehpp_85', ['all.hpp', ['../search_2views_2all_8hpp.html', 1, '']]], │ │ │ │ │ ['search_5fcommon_2ehpp_86', ['search_common.hpp', ['../search__common_8hpp.html', 1, '']]], │ │ │ │ │ ['search_5fconfigurator_2ehpp_87', ['search_configurator.hpp', ['../search__configurator_8hpp.html', 1, '']]], │ │ │ │ │ ['search_5fn_88', ['search_n', ['https://en.cppreference.com/w/cpp/algorithm/search_n.html', 0, 'std']]], │ │ │ │ │ - ['search_5fresult_89', ['search_result', ['../classseqan3_1_1search__result.html#a06c73a8bbcbb367464205b8c5d526b25', 1, 'seqan3::search_result::search_result()=default'], │ │ │ │ │ + ['search_5fresult_89', ['search_result', ['../classseqan3_1_1search__result.html#a9f204802e1d70ab0125ae74ba8edb8e3', 1, 'seqan3::search_result::search_result(search_result const &)=default'], │ │ │ │ │ + ['../classseqan3_1_1search__result.html#a06c73a8bbcbb367464205b8c5d526b25', 1, 'seqan3::search_result::search_result()=default'], │ │ │ │ │ ['../classseqan3_1_1search__result.html#a4c4134953baae202131136094932d70d', 1, 'seqan3::search_result::search_result(search_result &&)=default'], │ │ │ │ │ - ['../classseqan3_1_1search__result.html', 1, 'seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >'], │ │ │ │ │ - ['../classseqan3_1_1search__result.html#a9f204802e1d70ab0125ae74ba8edb8e3', 1, 'seqan3::search_result::search_result()'] │ │ │ │ │ + ['../classseqan3_1_1search__result.html', 1, 'seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >'] │ │ │ │ │ ]], │ │ │ │ │ ['search_5fresult_2ehpp_90', ['search_result.hpp', ['../search__result_8hpp.html', 1, '']]], │ │ │ │ │ ['search_5fscheme_5falgorithm_2ehpp_91', ['search_scheme_algorithm.hpp', ['../search__scheme__algorithm_8hpp.html', 1, '']]], │ │ │ │ │ ['search_5fscheme_5fprecomputed_2ehpp_92', ['search_scheme_precomputed.hpp', ['../search__scheme__precomputed_8hpp.html', 1, '']]], │ │ │ │ │ ['search_5ftraits_2ehpp_93', ['search_traits.hpp', ['../search__traits_8hpp.html', 1, '']]], │ │ │ │ │ ['searching_94', ['Step 2 - Reading the input and searching', ['../tutorial_read_mapper.html#autotoc_md221', 1, '']]], │ │ │ │ │ ['searching_20for_20approximate_20hits_95', ['Searching for approximate hits', ['../tutorial_index_search.html#autotoc_md193', 1, '']]], │ │ │ │ │ ['searching_20for_20exact_20hits_96', ['Searching for exact hits', ['../tutorial_index_search.html#autotoc_md192', 1, '']]], │ │ │ │ │ ['searching_20for_20matches_97', ['Searching for matches', ['../cookbook.html#autotoc_md63', 1, '']]], │ │ │ │ │ ['searching_20with_20seqan_98', ['Indexing and searching with SeqAn', ['../tutorial_index_search.html', 1, '']]], │ │ │ │ │ ['second_99', ['second', ['https://en.cppreference.com/w/cpp/utility/pair.html', 0, 'std::pair']]], │ │ │ │ │ ['second_5fin_5fpair_100', ['second_in_pair', ['../group__io__sam__file.html#gga12cf4f15e81e65c02a1a5899b75ca962a3e4a3649b175be8c22d163307b690d2d', 1, 'seqan3']]], │ │ │ │ │ ['secondary_5falignment_101', ['secondary_alignment', ['../group__io__sam__file.html#gga12cf4f15e81e65c02a1a5899b75ca962a135eb244645ffb71ec870d14ede3d669', 1, 'seqan3']]], │ │ │ │ │ - ['seconds_102', ['seconds', ['https://en.cppreference.com/w/cpp/chrono/duration/duration.html', 0, 'std::chrono::seconds::seconds()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/chrono/duration.html', 0, 'std::chrono::seconds'] │ │ │ │ │ + ['seconds_102', ['seconds', ['https://en.cppreference.com/w/cpp/chrono/duration.html', 0, 'std::chrono::seconds'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/chrono/duration/duration.html', 0, 'std::chrono::seconds::seconds()'] │ │ │ │ │ ]], │ │ │ │ │ - ['seed_103', ['seed', ['../structseqan3_1_1seed.html', 1, 'seqan3::seed'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/subtract_with_carry_engine/seed.html', 0, 'std::subtract_with_carry_engine::seed()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/shuffle_order_engine/seed.html', 0, 'std::shuffle_order_engine::seed()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/subtract_with_carry_engine/seed.html', 0, 'std::ranlux48_base::seed()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/discard_block_engine/seed.html', 0, 'std::ranlux48::seed()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/subtract_with_carry_engine/seed.html', 0, 'std::ranlux24_base::seed()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/discard_block_engine/seed.html', 0, 'std::ranlux24::seed()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/mersenne_twister_engine/seed.html', 0, 'std::mt19937_64::seed()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/mersenne_twister_engine/seed.html', 0, 'std::mt19937::seed()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine/seed.html', 0, 'std::minstd_rand0::seed()'], │ │ │ │ │ + ['seed_103', ['seed', ['https://en.cppreference.com/w/cpp/numeric/random/subtract_with_carry_engine/seed.html', 0, 'std::ranlux24_base::seed()'], │ │ │ │ │ + ['../structseqan3_1_1seed.html', 1, 'seqan3::seed'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/numeric/random/discard_block_engine/seed.html', 0, 'std::discard_block_engine::seed()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/numeric/random/independent_bits_engine/seed.html', 0, 'std::independent_bits_engine::seed()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/numeric/random/shuffle_order_engine/seed.html', 0, 'std::knuth_b::seed()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine/seed.html', 0, 'std::minstd_rand::seed()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine/seed.html', 0, 'std::linear_congruential_engine::seed()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/numeric/random/mersenne_twister_engine/seed.html', 0, 'std::mersenne_twister_engine::seed()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine/seed.html', 0, 'std::linear_congruential_engine::seed()'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine/seed.html', 0, 'std::minstd_rand::seed()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine/seed.html', 0, 'std::minstd_rand0::seed()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/numeric/random/mersenne_twister_engine/seed.html', 0, 'std::mt19937::seed()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/numeric/random/mersenne_twister_engine/seed.html', 0, 'std::mt19937_64::seed()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/numeric/random/discard_block_engine/seed.html', 0, 'std::ranlux24::seed()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/numeric/random/discard_block_engine/seed.html', 0, 'std::ranlux48::seed()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/numeric/random/subtract_with_carry_engine/seed.html', 0, 'std::ranlux48_base::seed()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/numeric/random/shuffle_order_engine/seed.html', 0, 'std::shuffle_order_engine::seed()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/numeric/random/subtract_with_carry_engine/seed.html', 0, 'std::subtract_with_carry_engine::seed()'] │ │ │ │ │ ]], │ │ │ │ │ - ['seed_5fseq_104', ['seed_seq', ['https://en.cppreference.com/w/cpp/numeric/random/seed_seq/seed_seq.html', 0, 'std::seed_seq::seed_seq()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/seed_seq.html', 0, 'std::seed_seq'] │ │ │ │ │ + ['seed_5fseq_104', ['seed_seq', ['https://en.cppreference.com/w/cpp/numeric/random/seed_seq.html', 0, 'std::seed_seq'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/numeric/random/seed_seq/seed_seq.html', 0, 'std::seed_seq::seed_seq()'] │ │ │ │ │ ]], │ │ │ │ │ - ['seekg_105', ['seekg', ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::basic_ifstream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::basic_iostream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::basic_fstream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::wstringstream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::wistringstream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::wistream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::wiostream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::wifstream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::wfstream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::strstream::seekg()'], │ │ │ │ │ + ['seekg_105', ['seekg', ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::strstream::seekg()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::istream::seekg()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::stringstream::seekg()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::istrstream::seekg()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::wfstream::seekg()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::wifstream::seekg()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::wiostream::seekg()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::wistream::seekg()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::wistringstream::seekg()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::wstringstream::seekg()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::basic_ifstream::seekg()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::basic_iostream::seekg()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::basic_istream::seekg()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::basic_istringstream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::istrstream::seekg()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::basic_stringstream::seekg()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::fstream::seekg()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::ifstream::seekg()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::istringstream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::istream::seekg()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::iostream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::ifstream::seekg()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::fstream::seekg()'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/seekg.html', 0, 'std::basic_fstream::seekg()'] │ │ │ │ │ ]], │ │ │ │ │ - ['seekoff_106', ['seekoff', ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::wstreambuf::seekoff()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::wfilebuf::seekoff()'], │ │ │ │ │ + ['seekoff_106', ['seekoff', ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::stringbuf::seekoff()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::wstringbuf::seekoff()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::wstreambuf::seekoff()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::wfilebuf::seekoff()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::strstreambuf::seekoff()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::stringbuf::seekoff()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::streambuf::seekoff()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::filebuf::seekoff()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::basic_stringbuf::seekoff()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::basic_streambuf::seekoff()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekoff.html', 0, 'std::basic_filebuf::seekoff()'] │ │ │ │ │ ]], │ │ │ │ │ - ['seekp_107', ['seekp', ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::strstream::seekp()'], │ │ │ │ │ + ['seekp_107', ['seekp', ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::stringstream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::basic_fstream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::basic_iostream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::basic_ofstream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::basic_ostream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::basic_ostringstream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::basic_stringstream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::fstream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::iostream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::ofstream::seekp()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::ostream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::ostringstream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::ostrstream::seekp()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::stringstream::seekp()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::ostream::seekp()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::strstream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::wfstream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::wiostream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::wofstream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::wostream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::wostringstream::seekp()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/seekp.html', 0, 'std::wstringstream::seekp()'] │ │ │ │ │ ]], │ │ │ │ │ - ['seekpos_108', ['seekpos', ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::wfilebuf::seekpos()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::wstringbuf::seekpos()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::basic_filebuf::seekpos()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::basic_streambuf::seekpos()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::basic_stringbuf::seekpos()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::filebuf::seekpos()'], │ │ │ │ │ + ['seekpos_108', ['seekpos', ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::wstringbuf::seekpos()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::wstreambuf::seekpos()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::streambuf::seekpos()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::wfilebuf::seekpos()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::strstreambuf::seekpos()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::stringbuf::seekpos()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::strstreambuf::seekpos()'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::streambuf::seekpos()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::filebuf::seekpos()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::basic_stringbuf::seekpos()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::basic_streambuf::seekpos()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_streambuf/pubseekpos.html', 0, 'std::basic_filebuf::seekpos()'] │ │ │ │ │ ]], │ │ │ │ │ ['select_5fon_5fcontainer_5fcopy_5fconstruction_109', ['select_on_container_copy_construction', ['https://en.cppreference.com/w/cpp/memory/allocator_traits/select_on_container_copy_construction.html', 0, 'std::allocator_traits::select_on_container_copy_construction()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/memory/scoped_allocator_adaptor/select_on_container_copy_construction.html', 0, 'std::scoped_allocator_adaptor::select_on_container_copy_construction()'] │ │ │ │ │ ]], │ │ │ │ │ ['select_5fon_5fcontainer_5fcopy_5fcontruction_110', ['select_on_container_copy_contruction', ['https://en.cppreference.com/w/cpp/memory/polymorphic_allocator/select_on_container_copy_contruction.html', 0, 'std::pmr::polymorphic_allocator']]], │ │ │ │ │ - ['selected_5ffield_5fids_111', ['selected_field_ids', ['../classseqan3_1_1sam__file__output.html#a82bbf0cde69146cf79ba4b0b65a0d4c0', 1, 'seqan3::sam_file_output::selected_field_ids'], │ │ │ │ │ + ['selected_5ffield_5fids_111', ['selected_field_ids', ['../classseqan3_1_1sequence__file__output.html#a9e8a21d466c2626bee42fd75a3d32ff0', 1, 'seqan3::sequence_file_output::selected_field_ids'], │ │ │ │ │ ['../classseqan3_1_1structure__file__output.html#a7280ad4eca5135fc533f44dbc57c96ab', 1, 'seqan3::structure_file_output::selected_field_ids'], │ │ │ │ │ ['../classseqan3_1_1structure__file__input.html#a99976f003ec0e430f41c08a0675b64b3', 1, 'seqan3::structure_file_input::selected_field_ids'], │ │ │ │ │ - ['../classseqan3_1_1sequence__file__output.html#a9e8a21d466c2626bee42fd75a3d32ff0', 1, 'seqan3::sequence_file_output::selected_field_ids'], │ │ │ │ │ ['../classseqan3_1_1sequence__file__input.html#ab1f59f85448dbcd86f29c38c8f9ddee5', 1, 'seqan3::sequence_file_input::selected_field_ids'], │ │ │ │ │ + ['../classseqan3_1_1sam__file__output.html#a82bbf0cde69146cf79ba4b0b65a0d4c0', 1, 'seqan3::sam_file_output::selected_field_ids'], │ │ │ │ │ ['../classseqan3_1_1sam__file__input.html#a8f61a4107ff8be7c94d33c140107a919', 1, 'seqan3::sam_file_input::selected_field_ids'] │ │ │ │ │ ]], │ │ │ │ │ ['semi_20global_20alignment_112', ['Global and semi-global alignment', ['../tutorial_pairwise_alignment.html#autotoc_md179', 1, '']]], │ │ │ │ │ - ['semialphabet_113', ['semialphabet', ['../interfaceseqan3_1_1semialphabet.html', 1, 'semialphabet'], │ │ │ │ │ - ['../howto_write_an_alphabet.html#autotoc_md96', 1, 'semialphabet'] │ │ │ │ │ + ['semialphabet_113', ['semialphabet', ['../howto_write_an_alphabet.html#autotoc_md96', 1, 'semialphabet'], │ │ │ │ │ + ['../interfaceseqan3_1_1semialphabet.html', 1, 'semialphabet'] │ │ │ │ │ ]], │ │ │ │ │ ['semialphabet_5fany_114', ['semialphabet_any', ['../classseqan3_1_1semialphabet__any.html#acc01895d2249b3e519221b3f711c960e', 1, 'seqan3::semialphabet_any::semialphabet_any() noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1semialphabet__any.html#ac745374eec440b850abebdd2be516c91', 1, 'seqan3::semialphabet_any::semialphabet_any(semialphabet_any const &) noexcept=default'], │ │ │ │ │ + ['../classseqan3_1_1semialphabet__any.html', 1, 'seqan3::semialphabet_any< size >'], │ │ │ │ │ ['../classseqan3_1_1semialphabet__any.html#a066823c85b21e63afb0bbf05823162de', 1, 'seqan3::semialphabet_any::semialphabet_any(semialphabet_any &&) noexcept=default'], │ │ │ │ │ - ['../classseqan3_1_1semialphabet__any.html#a03459e514e1ad80bdd70e06a13690939', 1, 'seqan3::semialphabet_any::semialphabet_any(other_alph_t const other)'], │ │ │ │ │ - ['../classseqan3_1_1semialphabet__any.html', 1, 'seqan3::semialphabet_any< size >'] │ │ │ │ │ + ['../classseqan3_1_1semialphabet__any.html#a03459e514e1ad80bdd70e06a13690939', 1, 'seqan3::semialphabet_any::semialphabet_any(other_alph_t const other)'] │ │ │ │ │ ]], │ │ │ │ │ ['semialphabet_5fany_2ehpp_115', ['semialphabet_any.hpp', ['../semialphabet__any_8hpp.html', 1, '']]], │ │ │ │ │ - ['sentinel_116', ['sentinel', ['../classseqan3_1_1structure__file__output.html#a01a63a65549bcc34dc28da3eaf5f1f46', 1, 'seqan3::structure_file_output::sentinel'], │ │ │ │ │ + ['sentinel_116', ['sentinel', ['../classseqan3_1_1sam__file__output.html#a50447cf476ad5d276b03a9f5e147da66', 1, 'seqan3::sam_file_output::sentinel'], │ │ │ │ │ + ['../classseqan3_1_1structure__file__output.html#a01a63a65549bcc34dc28da3eaf5f1f46', 1, 'seqan3::structure_file_output::sentinel'], │ │ │ │ │ ['../classseqan3_1_1structure__file__input.html#a5e8dc817e5f500590491081ce0e4a677', 1, 'seqan3::structure_file_input::sentinel'], │ │ │ │ │ ['../classseqan3_1_1sequence__file__output.html#a21459e5db2940cc51d4e858161f501a3', 1, 'seqan3::sequence_file_output::sentinel'], │ │ │ │ │ ['../classseqan3_1_1sequence__file__input.html#a1c020d309af7c75bc4822b60d2d4b2bc', 1, 'seqan3::sequence_file_input::sentinel'], │ │ │ │ │ - ['../classseqan3_1_1sam__file__output.html#a50447cf476ad5d276b03a9f5e147da66', 1, 'seqan3::sam_file_output::sentinel'], │ │ │ │ │ ['../classseqan3_1_1sam__file__input.html#a3f9b9bcabe386b8819e278e5e065d588', 1, 'seqan3::sam_file_input::sentinel'] │ │ │ │ │ ]], │ │ │ │ │ - ['sentry_117', ['sentry', ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::iostream::sentry'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::wfstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::wifstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::wiostream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::wistream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::istream::sentry'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::wistringstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::ifstream::sentry'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::fstream::sentry'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_stringstream::sentry'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_ostringstream::sentry'], │ │ │ │ │ + ['sentry_117', ['sentry', ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::istream::sentry'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::istream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::ofstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_ostream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_ostringstream::sentry::sentry()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_ostream::sentry'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_ofstream::sentry'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::wstringstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::wostringstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::wostream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::wofstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_ostringstream::sentry'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_stringstream::sentry'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::fstream::sentry'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::ifstream::sentry'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::iostream::sentry'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::wistream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::basic_stringstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::fstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::istrstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::istringstream::sentry::sentry()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::ifstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::iostream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::stringstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::basic_istream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::strstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::wfstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::ostrstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::ostringstream::sentry::sentry()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::basic_fstream::sentry::sentry()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::basic_ifstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::ostream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::wifstream::sentry::sentry()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::basic_iostream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::basic_istream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_ofstream::sentry'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::basic_istringstream::sentry::sentry()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_ofstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_ostream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_ostringstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::basic_stringstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::fstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::strstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::iostream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::istream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::istringstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::istrstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::ofstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::ostream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::ostringstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::ostrstream::sentry::sentry()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::stringstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::wiostream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::wistringstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::wofstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::wostream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::wostringstream::sentry::sentry()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::wstringstream::sentry::sentry()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::wostream::sentry'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_fstream::sentry'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::basic_ifstream::sentry'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ostream/sentry.html', 0, 'std::basic_iostream::sentry'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::basic_istream::sentry'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::basic_istringstream::sentry'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_istream/sentry.html', 0, 'std::istringstream::sentry'], │ │ │ │ │ @@ -473,23 +473,23 @@ │ │ │ │ │ ['seqan3_5fworkaround_5fliteral_169', ['SEQAN3_WORKAROUND_LITERAL', ['../platform_8hpp.html#a2b64eb1335f25677de9f742638faa766', 1, 'platform.hpp']]], │ │ │ │ │ ['seqan3_5fworkaround_5fview_5fperformance_170', ['SEQAN3_WORKAROUND_VIEW_PERFORMANCE', ['../platform_8hpp.html#ab6e277bf3bd2274093c56ad420caaf9f', 1, 'platform.hpp']]], │ │ │ │ │ ['sequence_171', ['sequence', ['../group__alignment__aligned__sequence.html', 1, 'Aligned Sequence'], │ │ │ │ │ ['../classseqan3_1_1sequence__record.html#a56fa4303b8b97cf0d641aca3f604edb7', 1, 'seqan3::sequence_record::sequence()'], │ │ │ │ │ ['../classseqan3_1_1sam__record.html#a517b73eb488a9223a132fcc8c40cba68', 1, 'seqan3::sam_record::sequence() const &&'], │ │ │ │ │ ['../classseqan3_1_1sam__record.html#adf02cf8ebb158b9230d143df52f176d0', 1, 'seqan3::sam_record::sequence() &&'], │ │ │ │ │ ['../classseqan3_1_1sam__record.html#ab0b35563acd426deb406aa051578c121', 1, 'seqan3::sam_record::sequence() const &'], │ │ │ │ │ - ['../classseqan3_1_1sequence__record.html#a86481f863b3be64fc4f0781b7df49df3', 1, 'seqan3::sequence_record::sequence()'], │ │ │ │ │ - ['../interfaceseqan3_1_1sequence.html', 1, 'sequence'], │ │ │ │ │ - ['../classseqan3_1_1sam__record.html#a3f413c5ac90dd5960e533ed97fa262c6', 1, 'seqan3::sam_record::sequence()'], │ │ │ │ │ - ['../classseqan3_1_1sequence__record.html#a38a56c11df3027167205349b6aa8698e', 1, 'seqan3::sequence_record::sequence() const &&'], │ │ │ │ │ - ['../classseqan3_1_1sequence__record.html#af910041887f4b2f7891568e9d1d71176', 1, 'seqan3::sequence_record::sequence() &'], │ │ │ │ │ ['../classseqan3_1_1structure__record.html#a52b282e44fd95771edff55071ac53b04', 1, 'seqan3::structure_record::sequence() const &'], │ │ │ │ │ ['../classseqan3_1_1structure__record.html#ae076c13c2ec0765f486d54658c3f1956', 1, 'seqan3::structure_record::sequence() &'], │ │ │ │ │ - ['../classseqan3_1_1structure__record.html#aa2a9a7ac3c90179a3ca9bf45c47af801', 1, 'seqan3::structure_record::sequence() &&'], │ │ │ │ │ ['../classseqan3_1_1structure__record.html#af9fae1d232aa40eb144219a09e666bdb', 1, 'seqan3::structure_record::sequence() const &&'], │ │ │ │ │ + ['../classseqan3_1_1structure__record.html#aa2a9a7ac3c90179a3ca9bf45c47af801', 1, 'seqan3::structure_record::sequence() &&'], │ │ │ │ │ + ['../classseqan3_1_1sequence__record.html#af910041887f4b2f7891568e9d1d71176', 1, 'seqan3::sequence_record::sequence() &'], │ │ │ │ │ + ['../classseqan3_1_1sequence__record.html#a38a56c11df3027167205349b6aa8698e', 1, 'seqan3::sequence_record::sequence() const &&'], │ │ │ │ │ + ['../interfaceseqan3_1_1sequence.html', 1, 'sequence'], │ │ │ │ │ + ['../classseqan3_1_1sequence__record.html#a86481f863b3be64fc4f0781b7df49df3', 1, 'seqan3::sequence_record::sequence()'], │ │ │ │ │ + ['../classseqan3_1_1sam__record.html#a3f413c5ac90dd5960e533ed97fa262c6', 1, 'seqan3::sam_record::sequence()'], │ │ │ │ │ ['../tutorial_ranges.html#autotoc_md156', 1, 'The bitpacked sequence'] │ │ │ │ │ ]], │ │ │ │ │ ['sequence_20alignment_172', ['sequence alignment', ['../group__alignment.html#autotoc_md2', 1, 'Multiple Sequence Alignment'], │ │ │ │ │ ['../group__alignment.html#autotoc_md1', 1, 'Pairwise Sequence Alignment'], │ │ │ │ │ ['../group__alignment.html#autotoc_md0', 1, 'Sequence Alignment'], │ │ │ │ │ ['../group__alignment.html', 1, 'Sequence Alignment'] │ │ │ │ │ ]], │ │ │ │ │ @@ -507,24 +507,24 @@ │ │ │ │ │ ['sequence_2ehpp_178', ['sequence.hpp', ['../sequence_8hpp.html', 1, '']]], │ │ │ │ │ ['sequence1_5fbegin_5fposition_179', ['sequence1_begin_position', ['../classseqan3_1_1alignment__result.html#a6f33588c817b822d0ebe7068d3072b6c', 1, 'seqan3::alignment_result']]], │ │ │ │ │ ['sequence1_5fend_5fposition_180', ['sequence1_end_position', ['../classseqan3_1_1alignment__result.html#aa46c287df0ea7f9e18759595e6c10b92', 1, 'seqan3::alignment_result']]], │ │ │ │ │ ['sequence1_5fid_181', ['sequence1_id', ['../classseqan3_1_1alignment__result.html#a5c1695571b05f410ff5acdedddc4ec5f', 1, 'seqan3::alignment_result']]], │ │ │ │ │ ['sequence2_5fbegin_5fposition_182', ['sequence2_begin_position', ['../classseqan3_1_1alignment__result.html#a97361fc44a9bfaeaa1d6227350925624', 1, 'seqan3::alignment_result']]], │ │ │ │ │ ['sequence2_5fend_5fposition_183', ['sequence2_end_position', ['../classseqan3_1_1alignment__result.html#a6b038224b33c17c58dd63436fe956351', 1, 'seqan3::alignment_result']]], │ │ │ │ │ ['sequence2_5fid_184', ['sequence2_id', ['../classseqan3_1_1alignment__result.html#a1f4d5939f1ceb163190cd475a07eb745', 1, 'seqan3::alignment_result']]], │ │ │ │ │ - ['sequence_5falphabet_185', ['sequence_alphabet', ['../interfaceseqan3_1_1sequence__file__input__traits.html#a4275843dbde20c55e770141162d34c64', 1, 'sequence_file_input_traits::sequence_alphabet()'], │ │ │ │ │ + ['sequence_5falphabet_185', ['sequence_alphabet', ['../structseqan3_1_1sequence__file__input__default__traits__dna.html#ae02a6d1f40e97c4309fd43344c564c93', 1, 'seqan3::sequence_file_input_default_traits_dna::sequence_alphabet'], │ │ │ │ │ + ['../interfaceseqan3_1_1sequence__file__input__traits.html#a4275843dbde20c55e770141162d34c64', 1, 'sequence_file_input_traits::sequence_alphabet()'], │ │ │ │ │ + ['../structseqan3_1_1sam__file__input__default__traits.html#a9776f93daf5173e3d5fe417a388e3124', 1, 'seqan3::sam_file_input_default_traits::sequence_alphabet'], │ │ │ │ │ ['../interfaceseqan3_1_1sam__file__input__traits.html#a4275843dbde20c55e770141162d34c64', 1, 'sam_file_input_traits::sequence_alphabet()'], │ │ │ │ │ - ['../structseqan3_1_1sequence__file__input__default__traits__aa.html#a435e119459b343c5c412f5bfe5f3e696', 1, 'seqan3::sequence_file_input_default_traits_aa::sequence_alphabet'], │ │ │ │ │ - ['../structseqan3_1_1sequence__file__input__default__traits__dna.html#ae02a6d1f40e97c4309fd43344c564c93', 1, 'seqan3::sequence_file_input_default_traits_dna::sequence_alphabet'], │ │ │ │ │ - ['../structseqan3_1_1sam__file__input__default__traits.html#a9776f93daf5173e3d5fe417a388e3124', 1, 'seqan3::sam_file_input_default_traits::sequence_alphabet'] │ │ │ │ │ + ['../structseqan3_1_1sequence__file__input__default__traits__aa.html#a435e119459b343c5c412f5bfe5f3e696', 1, 'seqan3::sequence_file_input_default_traits_aa::sequence_alphabet'] │ │ │ │ │ ]], │ │ │ │ │ - ['sequence_5falphabet_5ftype_186', ['sequence_alphabet_type', ['../classseqan3_1_1qualified.html#af133e82a5240f184c429233d6191a86e', 1, 'seqan3::qualified::sequence_alphabet_type'], │ │ │ │ │ + ['sequence_5falphabet_5ftype_186', ['sequence_alphabet_type', ['../classseqan3_1_1masked.html#ac769c19e038051796b9db5c54923bdf3', 1, 'seqan3::masked::sequence_alphabet_type'], │ │ │ │ │ + ['../classseqan3_1_1qualified.html#af133e82a5240f184c429233d6191a86e', 1, 'seqan3::qualified::sequence_alphabet_type'], │ │ │ │ │ ['../classseqan3_1_1structured__aa.html#a40dbdb38019e605198f5055e424a4cb0', 1, 'seqan3::structured_aa::sequence_alphabet_type'], │ │ │ │ │ - ['../classseqan3_1_1structured__rna.html#a9152a7c2f41af8e70be9dc72c3e98d8b', 1, 'seqan3::structured_rna::sequence_alphabet_type'], │ │ │ │ │ - ['../classseqan3_1_1masked.html#ac769c19e038051796b9db5c54923bdf3', 1, 'seqan3::masked::sequence_alphabet_type'] │ │ │ │ │ + ['../classseqan3_1_1structured__rna.html#a9152a7c2f41af8e70be9dc72c3e98d8b', 1, 'seqan3::structured_rna::sequence_alphabet_type'] │ │ │ │ │ ]], │ │ │ │ │ ['sequence_5fcontainer_187', ['sequence_container', ['../structseqan3_1_1sam__file__input__default__traits.html#a9cd572880384d7cecf1ee247eed24ae5', 1, 'seqan3::sam_file_input_default_traits::sequence_container'], │ │ │ │ │ ['../structseqan3_1_1sequence__file__input__default__traits__dna.html#afee574f03b80127626f32e6b2c1cfb3c', 1, 'seqan3::sequence_file_input_default_traits_dna::sequence_container'], │ │ │ │ │ ['../interfaceseqan3_1_1sequence__container.html', 1, 'sequence_container'], │ │ │ │ │ ['../interfaceseqan3_1_1sam__file__input__traits.html#a7a61acec31bd31f6d91747770c075ac2', 1, 'sam_file_input_traits::sequence_container()'], │ │ │ │ │ ['../interfaceseqan3_1_1sequence__file__input__traits.html#a7a61acec31bd31f6d91747770c075ac2', 1, 'sequence_file_input_traits::sequence_container()'] │ │ │ │ │ ]], │ │ │ │ │ @@ -1123,16 +1123,16 @@ │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/wstring_convert/state.html', 0, 'std::wstring_convert::state()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/fpos/state.html', 0, 'std::wstreampos::state()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/wbuffer_convert/state.html', 0, 'std::wbuffer_convert::state()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/fpos/state.html', 0, 'std::u16streampos::state()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/fpos/state.html', 0, 'std::streampos::state()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/fpos/state.html', 0, 'std::fpos::state()'] │ │ │ │ │ ]], │ │ │ │ │ - ['state_5ftype_364', ['state_type', ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt_utf8_utf16::state_type'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt_utf8::state_type'], │ │ │ │ │ + ['state_5ftype_364', ['state_type', ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt_utf8::state_type'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt_utf8_utf16::state_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt_utf16::state_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt_byname::state_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/codecvt.html', 0, 'std::codecvt::state_type'] │ │ │ │ │ ]], │ │ │ │ │ ['static_5fpointer_5fcast_365', ['static_pointer_cast', ['https://en.cppreference.com/w/cpp/memory/shared_ptr/pointer_cast.html', 0, 'std']]], │ │ │ │ │ ['status_366', ['status', ['https://en.cppreference.com/w/cpp/experimental/fs/directory_entry/status.html', 0, 'std::experimental::filesystem::directory_entry::status()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/filesystem/status.html', 0, 'std::filesystem::status()'], │ │ │ │ │ @@ -1275,16 +1275,16 @@ │ │ │ │ │ ['../classseqan3_1_1sam__file__input.html#a1e2c87fb14f894986e9889eaeb9dbc5a', 1, 'seqan3::sam_file_input::stream_char_type'], │ │ │ │ │ ['../classseqan3_1_1structure__file__output.html#a2bace77accec213fa88b413ca6e41d8b', 1, 'seqan3::structure_file_output::stream_char_type'], │ │ │ │ │ ['../classseqan3_1_1structure__file__input.html#a76fdbd937c11f0808ccbf6a5089bfb73', 1, 'seqan3::structure_file_input::stream_char_type'], │ │ │ │ │ ['../classseqan3_1_1sequence__file__output.html#a1959ce295325db83107da47d6065a800', 1, 'seqan3::sequence_file_output::stream_char_type'], │ │ │ │ │ ['../classseqan3_1_1sequence__file__input.html#a5d2242042c143a50f0949e026e9cfdae', 1, 'seqan3::sequence_file_input::stream_char_type'] │ │ │ │ │ ]], │ │ │ │ │ ['streambuf_418', ['streambuf', ['https://en.cppreference.com/w/cpp/io/basic_streambuf/basic_streambuf.html', 0, 'std::streambuf::streambuf()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/header/streambuf.html', 0, '(Global Namespace)'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_streambuf.html', 0, 'std::streambuf'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_streambuf.html', 0, 'std::streambuf'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/header/streambuf.html', 0, '(Global Namespace)'] │ │ │ │ │ ]], │ │ │ │ │ ['streamoff_419', ['streamoff', ['https://en.cppreference.com/w/cpp/io/streamoff.html', 0, 'std']]], │ │ │ │ │ ['streampos_420', ['streampos', ['https://en.cppreference.com/w/cpp/io/fpos.html', 0, 'std']]], │ │ │ │ │ ['streams_421', ['Controlling threads of (de-)compression streams', ['../cookbook.html#setting_compression_threads', 1, '']]], │ │ │ │ │ ['streams_20and_20de_20compression_422', ['Streams and (de-)compression', ['../group__io.html#io_compression', 1, '']]], │ │ │ │ │ ['streamsize_423', ['streamsize', ['https://en.cppreference.com/w/cpp/io/streamsize.html', 0, 'std']]], │ │ │ │ │ ['strerror_424', ['strerror', ['https://en.cppreference.com/w/cpp/string/byte/strerror.html', 0, 'std']]], │ │ │ │ │ @@ -1311,18 +1311,18 @@ │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/moneypunct.html', 0, 'std::moneypunct::string_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/moneypunct.html', 0, 'std::moneypunct_byname::string_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/numpunct.html', 0, 'std::numpunct::string_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/numpunct.html', 0, 'std::numpunct_byname::string_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/collate.html', 0, 'std::collate::string_type'] │ │ │ │ │ ]], │ │ │ │ │ ['string_5fview_431', ['string_view', ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/basic_string_view.html', 0, 'std::experimental::string_view::string_view()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string_view/basic_string_view.html', 0, 'std::string_view::string_view()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/header/string_view.html', 0, '(Global Namespace)'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string_view.html', 0, 'std::string_view'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/experimental/basic_string_view.html', 0, 'std::experimental::string_view'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/experimental/basic_string_view.html', 0, 'std::experimental::string_view'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string_view/basic_string_view.html', 0, 'std::string_view::string_view()'] │ │ │ │ │ ]], │ │ │ │ │ ['stringbuf_432', ['stringbuf', ['https://en.cppreference.com/w/cpp/io/basic_stringbuf/basic_stringbuf.html', 0, 'std::stringbuf::stringbuf()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_stringbuf.html', 0, 'std::stringbuf'] │ │ │ │ │ ]], │ │ │ │ │ ['stringstream_433', ['stringstream', ['https://en.cppreference.com/w/cpp/io/basic_stringstream/basic_stringstream.html', 0, 'std::stringstream::stringstream()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_stringstream.html', 0, 'std::stringstream'] │ │ │ │ │ ]], │ │ │ │ │ @@ -1361,74 +1361,74 @@ │ │ │ │ │ ['structure_20files_458', ['structure files', ['../md__2build_2reproducible-path_2seqan3-3_83_80_09ds_2doc_2fragments_2io__structure__input.html', 1, 'Reading structure files'], │ │ │ │ │ ['../md__2build_2reproducible-path_2seqan3-3_83_80_09ds_2doc_2fragments_2io__structure__output.html', 1, 'Writing structure files'] │ │ │ │ │ ]], │ │ │ │ │ ['structure_5falphabet_459', ['structure_alphabet', ['../structseqan3_1_1structure__file__input__default__traits__rna.html#a04aca14af589f888ffb782fb8d64029a', 1, 'seqan3::structure_file_input_default_traits_rna::structure_alphabet'], │ │ │ │ │ ['../structseqan3_1_1structure__file__input__default__traits__aa.html#a2936d33a35b757cbed50b8384c16f20f', 1, 'seqan3::structure_file_input_default_traits_aa::structure_alphabet'], │ │ │ │ │ ['../interfaceseqan3_1_1structure__file__input__traits.html#a252bbef5939fc522fd52759b5b219979', 1, 'structure_file_input_traits::structure_alphabet()'] │ │ │ │ │ ]], │ │ │ │ │ - ['structure_5falphabet_5ftype_460', ['structure_alphabet_type', ['../classseqan3_1_1structured__rna.html#aead5a7af59fdb2af2f3f92fd6e900de3', 1, 'seqan3::structured_rna::structure_alphabet_type'], │ │ │ │ │ - ['../classseqan3_1_1structured__aa.html#a7110e2e70662e1cc2dbbbb38fa79f3fe', 1, 'seqan3::structured_aa::structure_alphabet_type'] │ │ │ │ │ + ['structure_5falphabet_5ftype_460', ['structure_alphabet_type', ['../classseqan3_1_1structured__aa.html#a7110e2e70662e1cc2dbbbb38fa79f3fe', 1, 'seqan3::structured_aa::structure_alphabet_type'], │ │ │ │ │ + ['../classseqan3_1_1structured__rna.html#aead5a7af59fdb2af2f3f92fd6e900de3', 1, 'seqan3::structured_rna::structure_alphabet_type'] │ │ │ │ │ ]], │ │ │ │ │ - ['structure_5fcontainer_461', ['structure_container', ['../interfaceseqan3_1_1structure__file__input__traits.html#a8c6d96131f6b499f7b4631a36e9476fa', 1, 'structure_file_input_traits::structure_container()'], │ │ │ │ │ - ['../structseqan3_1_1structure__file__input__default__traits__rna.html#a76f0341594df818e4ca85c442a0f8b2b', 1, 'seqan3::structure_file_input_default_traits_rna::structure_container'] │ │ │ │ │ + ['structure_5fcontainer_461', ['structure_container', ['../structseqan3_1_1structure__file__input__default__traits__rna.html#a76f0341594df818e4ca85c442a0f8b2b', 1, 'seqan3::structure_file_input_default_traits_rna::structure_container'], │ │ │ │ │ + ['../interfaceseqan3_1_1structure__file__input__traits.html#a8c6d96131f6b499f7b4631a36e9476fa', 1, 'structure_file_input_traits::structure_container()'] │ │ │ │ │ ]], │ │ │ │ │ ['structure_5ffile_2finput_2ehpp_462', ['input.hpp', ['../structure__file_2input_8hpp.html', 1, '']]], │ │ │ │ │ ['structure_5ffile_2finput_5fformat_5fconcept_2ehpp_463', ['input_format_concept.hpp', ['../structure__file_2input__format__concept_8hpp.html', 1, '']]], │ │ │ │ │ ['structure_5ffile_2finput_5foptions_2ehpp_464', ['input_options.hpp', ['../structure__file_2input__options_8hpp.html', 1, '']]], │ │ │ │ │ ['structure_5ffile_2foutput_5fformat_5fconcept_2ehpp_465', ['output_format_concept.hpp', ['../structure__file_2output__format__concept_8hpp.html', 1, '']]], │ │ │ │ │ ['structure_5ffile_2foutput_5foptions_2ehpp_466', ['output_options.hpp', ['../structure__file_2output__options_8hpp.html', 1, '']]], │ │ │ │ │ ['structure_5ffile_2frecord_2ehpp_467', ['record.hpp', ['../structure__file_2record_8hpp.html', 1, '']]], │ │ │ │ │ - ['structure_5ffile_5finput_468', ['structure_file_input', ['../classseqan3_1_1structure__file__input.html#a84d9352d4e3ea3bcbc241da92718f107', 1, 'seqan3::structure_file_input::structure_file_input()=delete'], │ │ │ │ │ + ['structure_5ffile_5finput_468', ['structure_file_input', ['../classseqan3_1_1structure__file__input.html#a84d9352d4e3ea3bcbc241da92718f107', 1, 'seqan3::structure_file_input::structure_file_input()'], │ │ │ │ │ + ['../classseqan3_1_1structure__file__input.html', 1, 'seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >'], │ │ │ │ │ ['../classseqan3_1_1structure__file__input.html#a17db0e835dc717fff59018e2fb945428', 1, 'seqan3::structure_file_input::structure_file_input(structure_file_input const &)=delete'], │ │ │ │ │ + ['../classseqan3_1_1structure__file__input.html#a713081e1777cdc844845e7147db715cf', 1, 'seqan3::structure_file_input::structure_file_input(stream_type &&stream, file_format const &, selected_field_ids const &) -> structure_file_input< typename structure_file_input<>::traits_type, selected_field_ids, type_list< file_format > >'], │ │ │ │ │ ['../classseqan3_1_1structure__file__input.html#a9cd419a0957d5d3bd651fe48571c0f7e', 1, 'seqan3::structure_file_input::structure_file_input(structure_file_input &&)=default'], │ │ │ │ │ + ['../classseqan3_1_1structure__file__input.html#aa409d679f6430af43886d6471d29781a', 1, 'seqan3::structure_file_input::structure_file_input(stream_type &stream, file_format const &, selected_field_ids const &) -> structure_file_input< typename structure_file_input<>::traits_type, selected_field_ids, type_list< file_format > >'], │ │ │ │ │ ['../classseqan3_1_1structure__file__input.html#aece6c7ab36f0a66d36c624192370e7d0', 1, 'seqan3::structure_file_input::structure_file_input(std::filesystem::path filename, selected_field_ids const &fields_tag=selected_field_ids{})'], │ │ │ │ │ ['../classseqan3_1_1structure__file__input.html#a60f26b7bec2c390cb9e5c54b37cbd17b', 1, 'seqan3::structure_file_input::structure_file_input(stream_t &stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})'], │ │ │ │ │ - ['../classseqan3_1_1structure__file__input.html', 1, 'seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >'], │ │ │ │ │ - ['../classseqan3_1_1structure__file__input.html#aa409d679f6430af43886d6471d29781a', 1, 'seqan3::structure_file_input::structure_file_input(stream_type &stream, file_format const &, selected_field_ids const &) -> structure_file_input< typename structure_file_input<>::traits_type, selected_field_ids, type_list< file_format > >'], │ │ │ │ │ - ['../classseqan3_1_1structure__file__input.html#a713081e1777cdc844845e7147db715cf', 1, 'seqan3::structure_file_input::structure_file_input(stream_type &&stream, file_format const &, selected_field_ids const &) -> structure_file_input< typename structure_file_input<>::traits_type, selected_field_ids, type_list< file_format > >'], │ │ │ │ │ ['../classseqan3_1_1structure__file__input.html#a7645c53db6dbcb0b6ee3fa0c7abbd78c', 1, 'seqan3::structure_file_input::structure_file_input(stream_t &&stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})'] │ │ │ │ │ ]], │ │ │ │ │ ['structure_5ffile_5finput_5fdefault_5ftraits_5faa_469', ['structure_file_input_default_traits_aa', ['../structseqan3_1_1structure__file__input__default__traits__aa.html', 1, 'seqan3']]], │ │ │ │ │ ['structure_5ffile_5finput_5fdefault_5ftraits_5frna_470', ['structure_file_input_default_traits_rna', ['../structseqan3_1_1structure__file__input__default__traits__rna.html', 1, 'seqan3']]], │ │ │ │ │ ['structure_5ffile_5finput_5fformat_471', ['structure_file_input_format', ['../classseqan3_1_1structure__file__input__format.html', 1, 'seqan3']]], │ │ │ │ │ ['structure_5ffile_5finput_5foptions_472', ['structure_file_input_options', ['../structseqan3_1_1structure__file__input__options.html', 1, 'seqan3']]], │ │ │ │ │ ['structure_5ffile_5finput_5foptions_3c_20typename_20traits_5ftype_3a_3aseq_5flegal_5falphabet_2c_20selected_5ffield_5fids_3a_3acontains_28field_3a_3astructured_5fseq_29_3e_473', ['structure_file_input_options< typename traits_type::seq_legal_alphabet, selected_field_ids::contains(field::structured_seq)>', ['../structseqan3_1_1structure__file__input__options.html', 1, 'seqan3']]], │ │ │ │ │ ['structure_5ffile_5finput_5ftraits_474', ['structure_file_input_traits', ['../interfaceseqan3_1_1structure__file__input__traits.html', 1, '']]], │ │ │ │ │ - ['structure_5ffile_5foutput_475', ['structure_file_output', ['../classseqan3_1_1structure__file__output.html#ae7515774ee6bc61a4345a77a5fcc8fcf', 1, 'seqan3::structure_file_output::structure_file_output()'], │ │ │ │ │ + ['structure_5ffile_5foutput_475', ['structure_file_output', ['../classseqan3_1_1structure__file__output.html#ac02b4c20244ef0bfb678448b19dce647', 1, 'seqan3::structure_file_output::structure_file_output(stream_t &, file_format const &, selected_field_ids const &) -> structure_file_output< selected_field_ids, type_list< file_format > >'], │ │ │ │ │ + ['../classseqan3_1_1structure__file__output.html#aaf310c2180e19b875e27b386d4db5ef9', 1, 'seqan3::structure_file_output::structure_file_output(stream_t &&, file_format const &, selected_field_ids const &) -> structure_file_output< selected_field_ids, type_list< file_format > >'], │ │ │ │ │ + ['../classseqan3_1_1structure__file__output.html#ad83510713c5f43d96d0db2174d2f71ee', 1, 'seqan3::structure_file_output::structure_file_output(stream_t &&stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})'], │ │ │ │ │ + ['../classseqan3_1_1structure__file__output.html#ae7515774ee6bc61a4345a77a5fcc8fcf', 1, 'seqan3::structure_file_output::structure_file_output(stream_t &stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})'], │ │ │ │ │ ['../classseqan3_1_1structure__file__output.html', 1, 'seqan3::structure_file_output< selected_field_ids_, valid_formats_ >'], │ │ │ │ │ - ['../classseqan3_1_1structure__file__output.html#a835f5fe954c9e45d3e87ab596ed1f9d2', 1, 'seqan3::structure_file_output::structure_file_output()=delete'], │ │ │ │ │ - ['../classseqan3_1_1structure__file__output.html#afa89732163f810b04a809de2c49238ed', 1, 'seqan3::structure_file_output::structure_file_output(structure_file_output const &)=delete'], │ │ │ │ │ - ['../classseqan3_1_1structure__file__output.html#ad67b924aa641bdf8e5bdf43a5036f8ec', 1, 'seqan3::structure_file_output::structure_file_output(structure_file_output &&)=default'], │ │ │ │ │ ['../classseqan3_1_1structure__file__output.html#a8ae0ef3e186c9361110440a5f2b6d919', 1, 'seqan3::structure_file_output::structure_file_output(std::filesystem::path filename, selected_field_ids const &fields_tag=selected_field_ids{})'], │ │ │ │ │ - ['../classseqan3_1_1structure__file__output.html#ac02b4c20244ef0bfb678448b19dce647', 1, 'seqan3::structure_file_output::structure_file_output(stream_t &, file_format const &, selected_field_ids const &) -> structure_file_output< selected_field_ids, type_list< file_format > >'], │ │ │ │ │ - ['../classseqan3_1_1structure__file__output.html#aaf310c2180e19b875e27b386d4db5ef9', 1, 'seqan3::structure_file_output::structure_file_output(stream_t &&, file_format const &, selected_field_ids const &) -> structure_file_output< selected_field_ids, type_list< file_format > >'], │ │ │ │ │ - ['../classseqan3_1_1structure__file__output.html#ad83510713c5f43d96d0db2174d2f71ee', 1, 'seqan3::structure_file_output::structure_file_output(stream_t &&stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})'] │ │ │ │ │ + ['../classseqan3_1_1structure__file__output.html#ad67b924aa641bdf8e5bdf43a5036f8ec', 1, 'seqan3::structure_file_output::structure_file_output(structure_file_output &&)=default'], │ │ │ │ │ + ['../classseqan3_1_1structure__file__output.html#afa89732163f810b04a809de2c49238ed', 1, 'seqan3::structure_file_output::structure_file_output(structure_file_output const &)=delete'], │ │ │ │ │ + ['../classseqan3_1_1structure__file__output.html#a835f5fe954c9e45d3e87ab596ed1f9d2', 1, 'seqan3::structure_file_output::structure_file_output()=delete'] │ │ │ │ │ ]], │ │ │ │ │ ['structure_5ffile_5foutput_5fformat_476', ['structure_file_output_format', ['../classseqan3_1_1structure__file__output__format.html', 1, 'seqan3']]], │ │ │ │ │ ['structure_5ffile_5foutput_5foptions_477', ['structure_file_output_options', ['../structseqan3_1_1structure__file__output__options.html', 1, 'seqan3']]], │ │ │ │ │ ['structure_5frecord_478', ['structure_record', ['../classseqan3_1_1structure__record.html#ae94017b5c4316111db39283c4ef06fd3', 1, 'seqan3::structure_record::structure_record()'], │ │ │ │ │ ['../classseqan3_1_1structure__record.html', 1, 'seqan3::structure_record< field_types, field_ids >'], │ │ │ │ │ ['../classseqan3_1_1structure__record.html#a06eaafa2720bba85e1aac7d86cd6270f', 1, 'seqan3::structure_record::structure_record()=default'], │ │ │ │ │ ['../classseqan3_1_1structure__record.html#a5c8c3ecc68c8cb1bc6102524fac77609', 1, 'seqan3::structure_record::structure_record(structure_record &&)=default'] │ │ │ │ │ ]], │ │ │ │ │ ['structure_5frecord_3c_20detail_3a_3aselect_5ftypes_5fwith_5fids_5ft_3c_20field_5ftypes_2c_20field_5fids_2c_20selected_5ffield_5fids_20_3e_2c_20selected_5ffield_5fids_20_3e_479', ['structure_record< detail::select_types_with_ids_t< field_types, field_ids, selected_field_ids >, selected_field_ids >', ['../classseqan3_1_1structure__record.html', 1, 'seqan3']]], │ │ │ │ │ ['structure_5ftype_480', ['structure_type', ['../classseqan3_1_1structure__file__input.html#ab2ba6f0f32ac8f33344aafebc7b0b6da', 1, 'seqan3::structure_file_input']]], │ │ │ │ │ - ['structured_5faa_481', ['structured_aa', ['../classseqan3_1_1structured__aa.html', 1, 'seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >'], │ │ │ │ │ - ['../classseqan3_1_1structured__aa.html#a7c171adb4024c9ae48b4164286b6844e', 1, 'seqan3::structured_aa::structured_aa() noexcept=default'], │ │ │ │ │ + ['structured_5faa_481', ['structured_aa', ['../classseqan3_1_1structured__aa.html#a7c171adb4024c9ae48b4164286b6844e', 1, 'seqan3::structured_aa::structured_aa()'], │ │ │ │ │ + ['../classseqan3_1_1structured__aa.html', 1, 'seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >'], │ │ │ │ │ ['../classseqan3_1_1structured__aa.html#aa4e9573d3c4b57c1e3f026ed31bfd68c', 1, 'seqan3::structured_aa::structured_aa(structured_aa const &) noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1structured__aa.html#a02afdc41c059bf753843538d51311eef', 1, 'seqan3::structured_aa::structured_aa(structured_aa &&) noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1structured__aa.html#a3600f275a6b5baf79aa4e2f99cd27054', 1, 'seqan3::structured_aa::structured_aa(component_type const alph)'], │ │ │ │ │ ['../classseqan3_1_1structured__aa.html#ac24ccdc1dfaa6609ef93e30d1bb511d1', 1, 'seqan3::structured_aa::structured_aa(indirect_component_type const alph)'], │ │ │ │ │ ['../classseqan3_1_1structured__aa.html#aefe1b58e25b241aa7d5efb79e4400ab2', 1, 'seqan3::structured_aa::structured_aa(sequence_alphabet_type &&, structure_alphabet_type &&) -> structured_aa< std::decay_t< sequence_alphabet_type >, std::decay_t< structure_alphabet_type > >'] │ │ │ │ │ ]], │ │ │ │ │ ['structured_5faa_2ehpp_482', ['structured_aa.hpp', ['../structured__aa_8hpp.html', 1, '']]], │ │ │ │ │ - ['structured_5frna_483', ['structured_rna', ['../classseqan3_1_1structured__rna.html#a013aad8bef8325319f0def9fdb309aeb', 1, 'seqan3::structured_rna::structured_rna(structured_rna &&) noexcept=default'], │ │ │ │ │ + ['structured_5frna_483', ['structured_rna', ['../classseqan3_1_1structured__rna.html#a92c37f353ea45f8cfd229efbe7447679', 1, 'seqan3::structured_rna::structured_rna(component_type const alph) noexcept'], │ │ │ │ │ ['../classseqan3_1_1structured__rna.html#a820dbd9bd7cac2f29ceba1bbf9215996', 1, 'seqan3::structured_rna::structured_rna() noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1structured__rna.html#ac8142d9773d9c9d16d692c2414349a15', 1, 'seqan3::structured_rna::structured_rna(structured_rna const &) noexcept=default'], │ │ │ │ │ - ['../classseqan3_1_1structured__rna.html#a92c37f353ea45f8cfd229efbe7447679', 1, 'seqan3::structured_rna::structured_rna(component_type const alph) noexcept'], │ │ │ │ │ + ['../classseqan3_1_1structured__rna.html#a013aad8bef8325319f0def9fdb309aeb', 1, 'seqan3::structured_rna::structured_rna(structured_rna &&) noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1structured__rna.html#a514fe4dfd7efc9d67d1d3d291ec695c3', 1, 'seqan3::structured_rna::structured_rna(indirect_component_type const alph) noexcept'], │ │ │ │ │ ['../classseqan3_1_1structured__rna.html', 1, 'seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >'], │ │ │ │ │ ['../classseqan3_1_1structured__rna.html#a61a51320d1d9b2ad17f083b339ea427d', 1, 'seqan3::structured_rna::structured_rna()'] │ │ │ │ │ ]], │ │ │ │ │ ['structured_5frna_2ehpp_484', ['structured_rna.hpp', ['../structured__rna_8hpp.html', 1, '']]], │ │ │ │ │ ['structured_5fseq_485', ['structured_seq', ['../group__io.html#gga2511b22375848e1bedbc5013c952a817aa3a38c53d6063187a5bd348bf0e54f27', 1, 'seqan3']]], │ │ │ │ │ ['structured_5fseq_5falphabet_486', ['structured_seq_alphabet', ['../structseqan3_1_1structure__file__input__default__traits__rna.html#a5ba37a64e65ccac54bb5b9cea0433875', 1, 'seqan3::structure_file_input_default_traits_rna::structured_seq_alphabet'], │ │ │ │ │ @@ -1447,41 +1447,41 @@ │ │ │ │ │ ]], │ │ │ │ │ ['subcommand_20argument_20parser_494', ['subcommand argument parser', ['../subcommand_arg_parse.html#autotoc_md82', 1, 'A subcommand argument parser'], │ │ │ │ │ ['../cookbook.html#autotoc_md67', 1, 'Constructing a subcommand argument parser'] │ │ │ │ │ ]], │ │ │ │ │ ['subcommands_495', ['How to write an argument parser with subcommands', ['../subcommand_arg_parse.html', 1, '']]], │ │ │ │ │ ['submodules_496', ['Submodules', ['../about_copyright.html#autotoc_md226', 1, '']]], │ │ │ │ │ ['subsorting_497', ['subsorting', ['../classseqan3_1_1sam__file__header.html#aebb4f920a85a75784468a0ac62c65fcf', 1, 'seqan3::sam_file_header']]], │ │ │ │ │ - ['substr_498', ['substr', ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::pmr::string::substr()'], │ │ │ │ │ + ['substr_498', ['substr', ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::basic_string::substr()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::pmr::u16string::substr()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::wstring::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string_view/substr.html', 0, 'std::u32string_view::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::u32string::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string_view/substr.html', 0, 'std::u16string_view::substr()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string_view/substr.html', 0, 'std::wstring_view::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::u16string::substr()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::wstring::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string_view/substr.html', 0, 'std::string_view::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::string::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::pmr::wstring::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::pmr::u32string::substr()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::pmr::u16string::substr()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::pmr::string::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/substr.html', 0, 'std::experimental::wstring_view::substr()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string_view/substr.html', 0, 'std::wstring_view::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/substr.html', 0, 'std::experimental::u32string_view::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/substr.html', 0, 'std::experimental::u16string_view::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/substr.html', 0, 'std::experimental::string_view::substr()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/substr.html', 0, 'std::experimental::basic_string_view::substr()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string_view/substr.html', 0, 'std::basic_string_view::substr()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/substr.html', 0, 'std::basic_string::substr()'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string_view/substr.html', 0, 'std::basic_string_view::substr()'] │ │ │ │ │ ]], │ │ │ │ │ ['subtract_5fwith_5fcarry_5fengine_499', ['subtract_with_carry_engine', ['https://en.cppreference.com/w/cpp/numeric/random/subtract_with_carry_engine/subtract_with_carry_engine.html', 0, 'std::subtract_with_carry_engine::subtract_with_carry_engine()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/numeric/random/subtract_with_carry_engine.html', 0, 'std::subtract_with_carry_engine'] │ │ │ │ │ ]], │ │ │ │ │ - ['suffix_500', ['suffix', ['https://en.cppreference.com/w/cpp/regex/match_results/suffix.html', 0, 'std::match_results::suffix()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/regex/match_results/suffix.html', 0, 'std::wcmatch::suffix()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/regex/match_results/suffix.html', 0, 'std::smatch::suffix()'], │ │ │ │ │ + ['suffix_500', ['suffix', ['https://en.cppreference.com/w/cpp/regex/match_results/suffix.html', 0, 'std::wcmatch::suffix()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/regex/match_results/suffix.html', 0, 'std::wsmatch::suffix()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/regex/match_results/suffix.html', 0, 'std::smatch::suffix()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/regex/match_results/suffix.html', 0, 'std::match_results::suffix()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/regex/match_results/suffix.html', 0, 'std::cmatch::suffix()'] │ │ │ │ │ ]], │ │ │ │ │ ['suffix_5farray_5finterval_501', ['suffix_array_interval', ['../structseqan3_1_1suffix__array__interval.html', 1, 'seqan3::suffix_array_interval'], │ │ │ │ │ ['../classseqan3_1_1fm__index__cursor.html#a59b1a3182215cbe90442229389075425', 1, 'seqan3::fm_index_cursor::suffix_array_interval()'] │ │ │ │ │ ]], │ │ │ │ │ ['suites_502', ['Other test suites', ['../setup_tests.html#autotoc_md104', 1, '']]], │ │ │ │ │ ['sungetc_503', ['sungetc', ['https://en.cppreference.com/w/cpp/io/basic_streambuf/sungetc.html', 0, 'std::strstreambuf::sungetc()'], │ │ │ ├── ./usr/share/doc/libseqan3-dev/html/search/all_1c.js │ │ │ │ ├── js-beautify {} │ │ │ │ │ @@ -126,20 +126,20 @@ │ │ │ │ │ ['uninitialized_5fdefault_5fconstruct_5fn_50', ['uninitialized_default_construct_n', ['https://en.cppreference.com/w/cpp/memory/uninitialized_default_construct_n.html', 0, 'std']]], │ │ │ │ │ ['uninitialized_5ffill_51', ['uninitialized_fill', ['https://en.cppreference.com/w/cpp/memory/uninitialized_fill.html', 0, 'std']]], │ │ │ │ │ ['uninitialized_5ffill_5fn_52', ['uninitialized_fill_n', ['https://en.cppreference.com/w/cpp/memory/uninitialized_fill_n.html', 0, 'std']]], │ │ │ │ │ ['uninitialized_5fmove_53', ['uninitialized_move', ['https://en.cppreference.com/w/cpp/memory/uninitialized_move.html', 0, 'std']]], │ │ │ │ │ ['uninitialized_5fmove_5fn_54', ['uninitialized_move_n', ['https://en.cppreference.com/w/cpp/memory/uninitialized_move_n.html', 0, 'std']]], │ │ │ │ │ ['uninitialized_5fvalue_5fconstruct_55', ['uninitialized_value_construct', ['https://en.cppreference.com/w/cpp/memory/uninitialized_value_construct.html', 0, 'std']]], │ │ │ │ │ ['uninitialized_5fvalue_5fconstruct_5fn_56', ['uninitialized_value_construct_n', ['https://en.cppreference.com/w/cpp/memory/uninitialized_value_construct_n.html', 0, 'std']]], │ │ │ │ │ - ['unique_57', ['unique', ['https://en.cppreference.com/w/cpp/algorithm/unique.html', 0, 'std::unique()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/forward_list/unique.html', 0, 'std::forward_list::unique()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/list/unique.html', 0, 'std::list::unique()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/forward_list/unique.html', 0, 'std::pmr::forward_list::unique()'], │ │ │ │ │ + ['unique_57', ['unique', ['https://en.cppreference.com/w/cpp/container/forward_list/unique.html', 0, 'std::forward_list::unique()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/memory/shared_ptr/unique.html', 0, 'std::shared_ptr::unique()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/list/unique.html', 0, 'std::pmr::list::unique()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/memory/shared_ptr/unique.html', 0, 'std::shared_ptr::unique()'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/forward_list/unique.html', 0, 'std::pmr::forward_list::unique()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/list/unique.html', 0, 'std::list::unique()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/algorithm/unique.html', 0, 'std::unique(T... args)'] │ │ │ │ │ ]], │ │ │ │ │ ['unique_5fcopy_58', ['unique_copy', ['https://en.cppreference.com/w/cpp/algorithm/unique_copy.html', 0, 'std']]], │ │ │ │ │ ['unique_5flock_59', ['unique_lock', ['https://en.cppreference.com/w/cpp/thread/unique_lock/unique_lock.html', 0, 'std::unique_lock::unique_lock()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/thread/unique_lock.html', 0, 'std::unique_lock'] │ │ │ │ │ ]], │ │ │ │ │ ['unique_5fptr_60', ['unique_ptr', ['https://en.cppreference.com/w/cpp/memory/unique_ptr.html', 0, 'std::unique_ptr'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/memory/unique_ptr/unique_ptr.html', 0, 'std::unique_ptr::unique_ptr()'] │ │ │ ├── ./usr/share/doc/libseqan3-dev/html/search/all_8.js │ │ │ │ ├── js-beautify {} │ │ │ │ │ @@ -44,51 +44,51 @@ │ │ │ │ │ ['aa10murphy_25', ['aa10murphy', ['../classseqan3_1_1aa10murphy.html#a4996c882b9cd34faeb7e50f374e4c19e', 1, 'seqan3::aa10murphy::aa10murphy() noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1aa10murphy.html#a97221522bc234ab45ea5f13d834cf6b7', 1, 'seqan3::aa10murphy::aa10murphy(aa10murphy const &) noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1aa10murphy.html#afce0f5748b2e34f0a4a38309a12044bd', 1, 'seqan3::aa10murphy::aa10murphy(aa10murphy &&) noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1aa10murphy.html', 1, 'seqan3::aa10murphy'] │ │ │ │ │ ]], │ │ │ │ │ ['aa10murphy_2ehpp_26', ['aa10murphy.hpp', ['../aa10murphy_8hpp.html', 1, '']]], │ │ │ │ │ ['aa10murphy_5fvector_27', ['aa10murphy_vector', ['../classseqan3_1_1aa10murphy.html#a3991b6e68fa143088f09fa1817e28b3c', 1, 'seqan3::aa10murphy']]], │ │ │ │ │ - ['aa20_28', ['aa20', ['../classseqan3_1_1aa20.html', 1, 'seqan3::aa20'], │ │ │ │ │ - ['../classseqan3_1_1aa20.html#abb22f4f0e0e92794abc082d4829382b6', 1, 'seqan3::aa20::aa20(aa20 &&) noexcept=default'], │ │ │ │ │ + ['aa20_28', ['aa20', ['../classseqan3_1_1aa20.html#a133e070f0e703a2c9e7431794b36c9b1', 1, 'seqan3::aa20::aa20() noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1aa20.html#a2d3f5079be9f204dd35f521ab68bd78d', 1, 'seqan3::aa20::aa20(aa20 const &) noexcept=default'], │ │ │ │ │ - ['../classseqan3_1_1aa20.html#a133e070f0e703a2c9e7431794b36c9b1', 1, 'seqan3::aa20::aa20() noexcept=default'] │ │ │ │ │ + ['../classseqan3_1_1aa20.html#abb22f4f0e0e92794abc082d4829382b6', 1, 'seqan3::aa20::aa20(aa20 &&) noexcept=default'], │ │ │ │ │ + ['../classseqan3_1_1aa20.html', 1, 'seqan3::aa20'] │ │ │ │ │ ]], │ │ │ │ │ ['aa20_2ehpp_29', ['aa20.hpp', ['../aa20_8hpp.html', 1, '']]], │ │ │ │ │ ['aa20_5fvector_30', ['aa20_vector', ['../classseqan3_1_1aa20.html#a54f786a635f9f4d0316d529902967b8e', 1, 'seqan3::aa20']]], │ │ │ │ │ - ['aa27_31', ['aa27', ['../classseqan3_1_1aa27.html#ab4206dd364ee62d975efd96015e1b5ae', 1, 'seqan3::aa27::aa27(aa27 &&) noexcept=default'], │ │ │ │ │ + ['aa27_31', ['aa27', ['../classseqan3_1_1aa27.html#ac4dda1d4b0f156fae8c7309e9839ca99', 1, 'seqan3::aa27::aa27() noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1aa27.html#a38d4994d812887be4d8945d7f635a490', 1, 'seqan3::aa27::aa27(aa27 const &) noexcept=default'], │ │ │ │ │ - ['../classseqan3_1_1aa27.html#ac4dda1d4b0f156fae8c7309e9839ca99', 1, 'seqan3::aa27::aa27() noexcept=default'], │ │ │ │ │ + ['../classseqan3_1_1aa27.html#ab4206dd364ee62d975efd96015e1b5ae', 1, 'seqan3::aa27::aa27(aa27 &&) noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1aa27.html', 1, 'seqan3::aa27'] │ │ │ │ │ ]], │ │ │ │ │ ['aa27_2ehpp_32', ['aa27.hpp', ['../aa27_8hpp.html', 1, '']]], │ │ │ │ │ ['aa27_5fvector_33', ['aa27_vector', ['../classseqan3_1_1aa27.html#ae617aed4be9afeb2709b50359d250ae2', 1, 'seqan3::aa27']]], │ │ │ │ │ ['abi_20stability_34', ['ABI stability', ['../about_api.html#autotoc_md44', 1, '']]], │ │ │ │ │ ['abort_35', ['abort', ['https://en.cppreference.com/w/cpp/utility/program/abort.html', 0, 'std']]], │ │ │ │ │ ['abs_28float_29_36', ['abs(float)', ['https://en.cppreference.com/w/cpp/numeric/math/fabs.html', 0, 'std']]], │ │ │ │ │ ['abs_28int_29_37', ['abs(int)', ['https://en.cppreference.com/w/cpp/numeric/math/abs.html', 0, 'std']]], │ │ │ │ │ - ['absolute_38', ['absolute', ['https://en.cppreference.com/w/cpp/filesystem/absolute.html', 0, 'std::filesystem::absolute()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/experimental/fs/absolute.html', 0, 'std::experimental::filesystem::absolute()'] │ │ │ │ │ + ['absolute_38', ['absolute', ['https://en.cppreference.com/w/cpp/experimental/fs/absolute.html', 0, 'std::experimental::filesystem::absolute()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/filesystem/absolute.html', 0, 'std::filesystem::absolute()'] │ │ │ │ │ ]], │ │ │ │ │ ['accessing_20individual_20record_20members_39', ['Accessing individual record members', ['../tutorial_sam_file.html#autotoc_md205', 1, '']]], │ │ │ │ │ ['accessing_20the_20alignment_20results_40', ['Accessing the alignment results', ['../group__alignment__pairwise.html#autotoc_md19', 1, '']]], │ │ │ │ │ ['accumulate_41', ['accumulate', ['https://en.cppreference.com/w/cpp/algorithm/accumulate.html', 0, 'std']]], │ │ │ │ │ ['acid_20alphabet_42', ['The amino acid alphabet', ['../tutorial_alphabets.html#autotoc_md143', 1, '']]], │ │ │ │ │ ['acos_43', ['acos', ['https://en.cppreference.com/w/cpp/numeric/math/acos.html', 0, 'std']]], │ │ │ │ │ ['acosh_44', ['acosh', ['https://en.cppreference.com/w/cpp/numeric/math/acosh.html', 0, 'std']]], │ │ │ │ │ ['adaptation_45', ['Adaptation', ['../group__alphabet__adaptation.html', 1, '']]], │ │ │ │ │ ['adaptation_20of_20a_20third_20party_20type_46', ['Adaptation of a third party type', ['../howto_write_an_alphabet.html#howto_write_an_alphabet_custom', 1, '']]], │ │ │ │ │ ['adaptor_20object_47', ['2. The adaptor object', ['../howto_write_a_view.html#autotoc_md92', 1, '']]], │ │ │ │ │ ['adaptor_20objects_48', ['Custom range adaptor objects', ['../howto_write_a_view.html#autotoc_md89', 1, '']]], │ │ │ │ │ ['adaptor_5fbase_2ehpp_49', ['adaptor_base.hpp', ['../adaptor__base_8hpp.html', 1, '']]], │ │ │ │ │ ['adaptor_5ffor_5fview_5fwithout_5fargs_2ehpp_50', ['adaptor_for_view_without_args.hpp', ['../adaptor__for__view__without__args_8hpp.html', 1, '']]], │ │ │ │ │ ['adaptor_5ffrom_5ffunctor_2ehpp_51', ['adaptor_from_functor.hpp', ['../adaptor__from__functor_8hpp.html', 1, '']]], │ │ │ │ │ - ['add_5fcarriage_5freturn_52', ['add_carriage_return', ['../structseqan3_1_1structure__file__output__options.html#a13bb82ece885d23487e620192cd9074d', 1, 'seqan3::structure_file_output_options::add_carriage_return'], │ │ │ │ │ - ['../structseqan3_1_1sam__file__output__options.html#a3dfa3a55491a6f407d2954c6cce3b6cd', 1, 'seqan3::sam_file_output_options::add_carriage_return'], │ │ │ │ │ - ['../structseqan3_1_1sequence__file__output__options.html#aa6cebc1686a992ed6434723e06c18fc9', 1, 'seqan3::sequence_file_output_options::add_carriage_return'] │ │ │ │ │ + ['add_5fcarriage_5freturn_52', ['add_carriage_return', ['../structseqan3_1_1sam__file__output__options.html#a3dfa3a55491a6f407d2954c6cce3b6cd', 1, 'seqan3::sam_file_output_options::add_carriage_return'], │ │ │ │ │ + ['../structseqan3_1_1sequence__file__output__options.html#aa6cebc1686a992ed6434723e06c18fc9', 1, 'seqan3::sequence_file_output_options::add_carriage_return'], │ │ │ │ │ + ['../structseqan3_1_1structure__file__output__options.html#a13bb82ece885d23487e620192cd9074d', 1, 'seqan3::structure_file_output_options::add_carriage_return'] │ │ │ │ │ ]], │ │ │ │ │ ['add_5fconst_53', ['add_const', ['https://en.cppreference.com/w/cpp/types/add_cv.html', 0, 'std']]], │ │ │ │ │ ['add_5fconst_5ft_54', ['add_const_t', ['https://en.cppreference.com/w/cpp/types/add_cv.html', 0, 'std']]], │ │ │ │ │ ['add_5fcv_55', ['add_cv', ['https://en.cppreference.com/w/cpp/types/add_cv.html', 0, 'std']]], │ │ │ │ │ ['add_5fcv_5ft_56', ['add_cv_t', ['https://en.cppreference.com/w/cpp/types/add_cv.html', 0, 'std']]], │ │ │ │ │ ['add_5fenum_5fbitwise_5foperators_2ehpp_57', ['add_enum_bitwise_operators.hpp', ['../add__enum__bitwise__operators_8hpp.html', 1, '']]], │ │ │ │ │ ['add_5fflag_58', ['add_flag', ['../classseqan3_1_1argument__parser.html#a095ad3bb400add5735007c88b37442e4', 1, 'seqan3::argument_parser']]], │ │ │ │ │ @@ -122,28 +122,28 @@ │ │ │ │ │ ['agenda_86', ['Agenda', ['../tutorial_read_mapper.html#autotoc_md213', 1, '']]], │ │ │ │ │ ['algorithm_87', ['algorithm', ['https://en.cppreference.com/w/cpp/header/algorithm.html', 0, '(Global Namespace)'], │ │ │ │ │ ['../group__core__algorithm.html', 1, 'Algorithm'] │ │ │ │ │ ]], │ │ │ │ │ ['algorithm_2ehpp_88', ['algorithm.hpp', ['../algorithm_8hpp.html', 1, '']]], │ │ │ │ │ ['algorithm_3a_20seqan3_3a_3asearch_89', ['Search algorithm: seqan3::search', ['../group__search.html#autotoc_md40', 1, '']]], │ │ │ │ │ ['algorithm_5fexecutor_5fblocking_2ehpp_90', ['algorithm_executor_blocking.hpp', ['../algorithm__executor__blocking_8hpp.html', 1, '']]], │ │ │ │ │ - ['algorithm_5frange_5fiterator_91', ['algorithm_range_iterator', ['../classseqan3_1_1algorithm__result__generator__range_1_1algorithm__range__iterator.html#a0ef8f2222ccfaa9823e15f06b4e7ab41', 1, 'seqan3::algorithm_result_generator_range::algorithm_range_iterator::algorithm_range_iterator() noexcept=default'], │ │ │ │ │ - ['../classseqan3_1_1algorithm__result__generator__range_1_1algorithm__range__iterator.html#aa5c27c9e5236434bf389dbc5f89c95a8', 1, 'seqan3::algorithm_result_generator_range::algorithm_range_iterator::algorithm_range_iterator(algorithm_range_iterator const &) noexcept=default'], │ │ │ │ │ - ['../classseqan3_1_1algorithm__result__generator__range_1_1algorithm__range__iterator.html#ac199b5d1c9a8014fb73ca31d73003ec5', 1, 'seqan3::algorithm_result_generator_range::algorithm_range_iterator::algorithm_range_iterator(algorithm_result_generator_range &range)'], │ │ │ │ │ + ['algorithm_5frange_5fiterator_91', ['algorithm_range_iterator', ['../classseqan3_1_1algorithm__result__generator__range_1_1algorithm__range__iterator.html', 1, 'seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator'], │ │ │ │ │ ['../classseqan3_1_1algorithm__result__generator__range.html#a851a75624a9a9211e6bb1e517d0ddc3a', 1, 'seqan3::algorithm_result_generator_range::algorithm_range_iterator'], │ │ │ │ │ - ['../classseqan3_1_1algorithm__result__generator__range_1_1algorithm__range__iterator.html', 1, 'seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator'], │ │ │ │ │ - ['../classseqan3_1_1algorithm__result__generator__range_1_1algorithm__range__iterator.html#a58552e102fcabf5ef987a76faf1d0500', 1, 'seqan3::algorithm_result_generator_range::algorithm_range_iterator::algorithm_range_iterator()'] │ │ │ │ │ + ['../classseqan3_1_1algorithm__result__generator__range_1_1algorithm__range__iterator.html#a0ef8f2222ccfaa9823e15f06b4e7ab41', 1, 'seqan3::algorithm_result_generator_range::algorithm_range_iterator::algorithm_range_iterator() noexcept=default'], │ │ │ │ │ + ['../classseqan3_1_1algorithm__result__generator__range_1_1algorithm__range__iterator.html#aa5c27c9e5236434bf389dbc5f89c95a8', 1, 'seqan3::algorithm_result_generator_range::algorithm_range_iterator::algorithm_range_iterator(algorithm_range_iterator const &) noexcept=default'], │ │ │ │ │ + ['../classseqan3_1_1algorithm__result__generator__range_1_1algorithm__range__iterator.html#a58552e102fcabf5ef987a76faf1d0500', 1, 'seqan3::algorithm_result_generator_range::algorithm_range_iterator::algorithm_range_iterator(algorithm_range_iterator &&) noexcept=default'], │ │ │ │ │ + ['../classseqan3_1_1algorithm__result__generator__range_1_1algorithm__range__iterator.html#ac199b5d1c9a8014fb73ca31d73003ec5', 1, 'seqan3::algorithm_result_generator_range::algorithm_range_iterator::algorithm_range_iterator(algorithm_result_generator_range &range)'] │ │ │ │ │ ]], │ │ │ │ │ - ['algorithm_5fresult_5fgenerator_5frange_92', ['algorithm_result_generator_range', ['../classseqan3_1_1algorithm__result__generator__range.html#ad457244e7ca52243e06bc756136dcda1', 1, 'seqan3::algorithm_result_generator_range::algorithm_result_generator_range(algorithm_executor_type &&algorithm_executor)'], │ │ │ │ │ - ['../classseqan3_1_1algorithm__result__generator__range.html#aa1e9e85ddff7dd0351963d91ace55fde', 1, 'seqan3::algorithm_result_generator_range::algorithm_result_generator_range()=default'], │ │ │ │ │ - ['../classseqan3_1_1algorithm__result__generator__range.html', 1, 'seqan3::algorithm_result_generator_range< algorithm_executor_type >'], │ │ │ │ │ + ['algorithm_5fresult_5fgenerator_5frange_92', ['algorithm_result_generator_range', ['../classseqan3_1_1algorithm__result__generator__range.html', 1, 'seqan3::algorithm_result_generator_range< algorithm_executor_type >'], │ │ │ │ │ ['../classseqan3_1_1algorithm__result__generator__range.html#ae0d4ad4b7f2e5ec7d22e72c169bf8f19', 1, 'seqan3::algorithm_result_generator_range::algorithm_result_generator_range(algorithm_executor_type &&) -> algorithm_result_generator_range< std::remove_reference_t< algorithm_executor_type > >'], │ │ │ │ │ - ['../classseqan3_1_1algorithm__result__generator__range.html#a8507c01616bedf304abc3543434e9633', 1, 'seqan3::algorithm_result_generator_range::algorithm_result_generator_range(algorithm_result_generator_range const &)=delete'], │ │ │ │ │ + ['../classseqan3_1_1algorithm__result__generator__range.html#ad457244e7ca52243e06bc756136dcda1', 1, 'seqan3::algorithm_result_generator_range::algorithm_result_generator_range(algorithm_executor_type &&algorithm_executor)'], │ │ │ │ │ + ['../classseqan3_1_1algorithm__result__generator__range.html#a2647fd1d6132d41c04a8ef4a76e3aecf', 1, 'seqan3::algorithm_result_generator_range::algorithm_result_generator_range(algorithm_executor_type const &algorithm_executor)=delete'], │ │ │ │ │ ['../classseqan3_1_1algorithm__result__generator__range.html#a3f96e283bfb332008dce8ac18cc65660', 1, 'seqan3::algorithm_result_generator_range::algorithm_result_generator_range(algorithm_result_generator_range &&)=default'], │ │ │ │ │ - ['../classseqan3_1_1algorithm__result__generator__range.html#a2647fd1d6132d41c04a8ef4a76e3aecf', 1, 'seqan3::algorithm_result_generator_range::algorithm_result_generator_range(algorithm_executor_type const &algorithm_executor)=delete'] │ │ │ │ │ + ['../classseqan3_1_1algorithm__result__generator__range.html#a8507c01616bedf304abc3543434e9633', 1, 'seqan3::algorithm_result_generator_range::algorithm_result_generator_range(algorithm_result_generator_range const &)=delete'], │ │ │ │ │ + ['../classseqan3_1_1algorithm__result__generator__range.html#aa1e9e85ddff7dd0351963d91ace55fde', 1, 'seqan3::algorithm_result_generator_range::algorithm_result_generator_range()=default'] │ │ │ │ │ ]], │ │ │ │ │ ['algorithm_5fresult_5fgenerator_5frange_2ehpp_93', ['algorithm_result_generator_range.hpp', ['../algorithm__result__generator__range_8hpp.html', 1, '']]], │ │ │ │ │ ['algorithmic_20details_94', ['Algorithmic details', ['../group__alignment__pairwise.html#autotoc_md20', 1, '']]], │ │ │ │ │ ['aliases_2ehpp_95', ['aliases.hpp', ['../aliases_8hpp.html', 1, '']]], │ │ │ │ │ ['align_96', ['align', ['https://en.cppreference.com/w/cpp/memory/align.html', 0, 'std']]], │ │ │ │ │ ['align_5fconfig_5fband_2ehpp_97', ['align_config_band.hpp', ['../align__config__band_8hpp.html', 1, '']]], │ │ │ │ │ ['align_5fconfig_5fdebug_2ehpp_98', ['align_config_debug.hpp', ['../align__config__debug_8hpp.html', 1, '']]], │ │ │ │ │ @@ -160,35 +160,35 @@ │ │ │ │ │ ['align_5fconfig_5fvectorised_2ehpp_109', ['align_config_vectorised.hpp', ['../align__config__vectorised_8hpp.html', 1, '']]], │ │ │ │ │ ['align_5fpairwise_110', ['align_pairwise', ['../group__alignment__pairwise.html#gadaa2ea56040a15d60f41ed022dd47389', 1, 'seqan3']]], │ │ │ │ │ ['align_5fpairwise_2ehpp_111', ['align_pairwise.hpp', ['../align__pairwise_8hpp.html', 1, '']]], │ │ │ │ │ ['align_5fresult_5fselector_2ehpp_112', ['align_result_selector.hpp', ['../align__result__selector_8hpp.html', 1, '']]], │ │ │ │ │ ['align_5fval_5ft_113', ['align_val_t', ['https://en.cppreference.com/w/cpp/memory/new/align_val_t.html', 0, 'std']]], │ │ │ │ │ ['aligned_20sequence_114', ['Aligned Sequence', ['../group__alignment__aligned__sequence.html', 1, '']]], │ │ │ │ │ ['aligned_5falloc_115', ['aligned_alloc', ['https://en.cppreference.com/w/cpp/memory/c/aligned_alloc.html', 0, 'std']]], │ │ │ │ │ - ['aligned_5fallocator_116', ['aligned_allocator', ['../classseqan3_1_1aligned__allocator.html', 1, 'seqan3::aligned_allocator< value_t, alignment_v >'], │ │ │ │ │ - ['../classseqan3_1_1aligned__allocator.html#ae2040e19ccb652293c69ead67f995e4a', 1, 'seqan3::aligned_allocator::aligned_allocator()=default'], │ │ │ │ │ - ['../classseqan3_1_1aligned__allocator.html#ab88e632e1bb027f1300b22d6e9c16685', 1, 'seqan3::aligned_allocator::aligned_allocator(aligned_allocator const &)=default'], │ │ │ │ │ + ['aligned_5fallocator_116', ['aligned_allocator', ['../classseqan3_1_1aligned__allocator.html#ab88e632e1bb027f1300b22d6e9c16685', 1, 'seqan3::aligned_allocator::aligned_allocator(aligned_allocator const &)=default'], │ │ │ │ │ + ['../classseqan3_1_1aligned__allocator.html#a6ebde9f077c71238fc6598ed672feec2', 1, 'seqan3::aligned_allocator::aligned_allocator(aligned_allocator< other_value_type, other_alignment > const &) noexcept'], │ │ │ │ │ ['../classseqan3_1_1aligned__allocator.html#add3126c0b59e09132af32f0c1d7ce915', 1, 'seqan3::aligned_allocator::aligned_allocator(aligned_allocator &&)=default'], │ │ │ │ │ - ['../classseqan3_1_1aligned__allocator.html#a6ebde9f077c71238fc6598ed672feec2', 1, 'seqan3::aligned_allocator::aligned_allocator(aligned_allocator< other_value_type, other_alignment > const &) noexcept'] │ │ │ │ │ + ['../classseqan3_1_1aligned__allocator.html#ae2040e19ccb652293c69ead67f995e4a', 1, 'seqan3::aligned_allocator::aligned_allocator()=default'], │ │ │ │ │ + ['../classseqan3_1_1aligned__allocator.html', 1, 'seqan3::aligned_allocator< value_t, alignment_v >'] │ │ │ │ │ ]], │ │ │ │ │ ['aligned_5fallocator_2ehpp_117', ['aligned_allocator.hpp', ['../aligned__allocator_8hpp.html', 1, '']]], │ │ │ │ │ ['aligned_5fsequence_118', ['aligned_sequence', ['../interfaceseqan3_1_1aligned__sequence.html', 1, '']]], │ │ │ │ │ ['aligned_5fsequence_5fbuilder_2ehpp_119', ['aligned_sequence_builder.hpp', ['../aligned__sequence__builder_8hpp.html', 1, '']]], │ │ │ │ │ ['aligned_5fsequence_5fconcept_2ehpp_120', ['aligned_sequence_concept.hpp', ['../aligned__sequence__concept_8hpp.html', 1, '']]], │ │ │ │ │ ['aligned_5fstorage_121', ['aligned_storage', ['https://en.cppreference.com/w/cpp/types/aligned_storage.html', 0, 'std']]], │ │ │ │ │ ['aligned_5fstorage_5ft_122', ['aligned_storage_t', ['https://en.cppreference.com/w/cpp/types/aligned_storage.html', 0, 'std']]], │ │ │ │ │ ['aligned_5funion_123', ['aligned_union', ['https://en.cppreference.com/w/cpp/types/aligned_union.html', 0, 'std']]], │ │ │ │ │ ['aligned_5funion_5ft_124', ['aligned_union_t', ['https://en.cppreference.com/w/cpp/types/aligned_union.html', 0, 'std']]], │ │ │ │ │ - ['alignment_125', ['alignment', ['../classseqan3_1_1sam__record.html#abc7ebdf02e7388981682904739956acc', 1, 'seqan3::sam_record::alignment()'], │ │ │ │ │ - ['../group__io.html#gga2511b22375848e1bedbc5013c952a817a5a159214b169da90d96590d47fff379e', 1, 'seqan3::alignment'], │ │ │ │ │ + ['alignment_125', ['alignment', ['../classseqan3_1_1sam__record.html#abc7ebdf02e7388981682904739956acc', 1, 'seqan3::sam_record::alignment() const &'], │ │ │ │ │ + ['../classseqan3_1_1sam__record.html#a184010b59cef8a0ac9e5324242527de7', 1, 'seqan3::sam_record::alignment() &'], │ │ │ │ │ + ['../classseqan3_1_1sam__record.html#ac282bb3169e193f06296cf16f7d4e754', 1, 'seqan3::sam_record::alignment() const &&'], │ │ │ │ │ + ['../classseqan3_1_1sam__record.html#a7f226a8189d261adb355407146dbe3bb', 1, 'seqan3::sam_record::alignment() &&'], │ │ │ │ │ ['../classseqan3_1_1alignment__result.html#a9456c0081f0edfc3012d9bd7da62578b', 1, 'seqan3::alignment_result::alignment()'], │ │ │ │ │ ['../classseqan3_1_1aligned__allocator.html#acb1c373d806c8734be9b9a6b47948e99', 1, 'seqan3::aligned_allocator::alignment'], │ │ │ │ │ - ['../classseqan3_1_1sam__record.html#a7f226a8189d261adb355407146dbe3bb', 1, 'seqan3::sam_record::alignment() &&'], │ │ │ │ │ - ['../classseqan3_1_1sam__record.html#ac282bb3169e193f06296cf16f7d4e754', 1, 'seqan3::sam_record::alignment() const &&'], │ │ │ │ │ - ['../classseqan3_1_1sam__record.html#a184010b59cef8a0ac9e5324242527de7', 1, 'seqan3::sam_record::alignment() &'], │ │ │ │ │ + ['../group__io.html#gga2511b22375848e1bedbc5013c952a817a5a159214b169da90d96590d47fff379e', 1, 'seqan3::alignment'], │ │ │ │ │ ['../tutorial_pairwise_alignment.html#autotoc_md182', 1, 'Banded alignment'], │ │ │ │ │ ['../group__cigar__conversion.html#autotoc_md7', 1, 'Creating a CIGAR string from an alignment'], │ │ │ │ │ ['../tutorial_pairwise_alignment.html#autotoc_md179', 1, 'Global and semi-global alignment'], │ │ │ │ │ ['../group__alignment__pairwise.html#autotoc_md12', 1, 'Introduction to pairwise alignment'], │ │ │ │ │ ['../group__alignment.html#autotoc_md2', 1, 'Multiple Sequence Alignment'], │ │ │ │ │ ['../tutorial_pairwise_alignment.html', 1, 'Pairwise Alignment'], │ │ │ │ │ ['../group__alignment.html#autotoc_md1', 1, 'Pairwise Sequence Alignment'], │ │ │ │ │ @@ -230,22 +230,22 @@ │ │ │ │ │ ['alignment_5ffrom_5fcigar_155', ['alignment_from_cigar', ['../group__cigar__conversion.html#gaed3f08aaa3e20cb929befdb2945b8070', 1, 'seqan3::alignment_from_cigar(std::vector< cigar > const &cigar_vector, reference_type const &reference, uint32_t const zero_based_reference_start_position, sequence_type const &query)'], │ │ │ │ │ ['../group__cigar__conversion.html#ga5e3ff7d9aef4b2d80bd10313d5bb7322', 1, 'seqan3::alignment_from_cigar(std::string const &cigar_string, reference_type const &reference, uint32_t const zero_based_reference_start_position, sequence_type const &query)'] │ │ │ │ │ ]], │ │ │ │ │ ['alignment_5ffrom_5fcigar_2ehpp_156', ['alignment_from_cigar.hpp', ['../alignment__from__cigar_8hpp.html', 1, '']]], │ │ │ │ │ ['alignment_5fmatrix_5fcolumn_5fmajor_5frange_5fbase_2ehpp_157', ['alignment_matrix_column_major_range_base.hpp', ['../alignment__matrix__column__major__range__base_8hpp.html', 1, '']]], │ │ │ │ │ ['alignment_5fmatrix_5fpolicy_2ehpp_158', ['alignment_matrix_policy.hpp', ['../alignment__matrix__policy_8hpp.html', 1, '']]], │ │ │ │ │ ['alignment_5fof_159', ['alignment_of', ['https://en.cppreference.com/w/cpp/types/alignment_of.html', 0, 'std']]], │ │ │ │ │ - ['alignment_5fof_5fv_160', ['alignment_of_v', ['https://en.cppreference.com/w/cpp/types/alignment_of.html', 0, 'std::alignment_of_v'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/experimental/type_trait_variable_templates.html', 0, 'std::experimental::alignment_of_v'] │ │ │ │ │ + ['alignment_5fof_5fv_160', ['alignment_of_v', ['https://en.cppreference.com/w/cpp/experimental/type_trait_variable_templates.html', 0, 'std::experimental::alignment_of_v'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/types/alignment_of.html', 0, 'std::alignment_of_v'] │ │ │ │ │ ]], │ │ │ │ │ ['alignment_5foptimum_2ehpp_161', ['alignment_optimum.hpp', ['../alignment__optimum_8hpp.html', 1, '']]], │ │ │ │ │ - ['alignment_5fresult_162', ['alignment_result', ['../classseqan3_1_1alignment__result.html#aa5a953e5696c58adb31af0ad0e749fa3', 1, 'seqan3::alignment_result::alignment_result()'], │ │ │ │ │ - ['../classseqan3_1_1alignment__result.html', 1, 'seqan3::alignment_result< alignment_result_value_t >'], │ │ │ │ │ + ['alignment_5fresult_162', ['alignment_result', ['../classseqan3_1_1alignment__result.html#aa5a953e5696c58adb31af0ad0e749fa3', 1, 'seqan3::alignment_result::alignment_result()=default'], │ │ │ │ │ ['../classseqan3_1_1alignment__result.html#a776eeef5b9824927bc885fd95d27729a', 1, 'seqan3::alignment_result::alignment_result(alignment_result const &)=default'], │ │ │ │ │ - ['../classseqan3_1_1alignment__result.html#aed739b93dde87d7bb9fe9ca4a1efee0c', 1, 'seqan3::alignment_result::alignment_result(alignment_result &&)=default'] │ │ │ │ │ + ['../classseqan3_1_1alignment__result.html#aed739b93dde87d7bb9fe9ca4a1efee0c', 1, 'seqan3::alignment_result::alignment_result(alignment_result &&)=default'], │ │ │ │ │ + ['../classseqan3_1_1alignment__result.html', 1, 'seqan3::alignment_result< alignment_result_value_t >'] │ │ │ │ │ ]], │ │ │ │ │ ['alignment_5fresult_2ehpp_163', ['alignment_result.hpp', ['../alignment__result_8hpp.html', 1, '']]], │ │ │ │ │ ['alignment_5fscore_5fmatrix_5fone_5fcolumn_2ehpp_164', ['alignment_score_matrix_one_column.hpp', ['../alignment__score__matrix__one__column_8hpp.html', 1, '']]], │ │ │ │ │ ['alignment_5fscore_5fmatrix_5fone_5fcolumn_5fbanded_2ehpp_165', ['alignment_score_matrix_one_column_banded.hpp', ['../alignment__score__matrix__one__column__banded_8hpp.html', 1, '']]], │ │ │ │ │ ['alignment_5fscore_5fmatrix_5fone_5fcolumn_5fbase_2ehpp_166', ['alignment_score_matrix_one_column_base.hpp', ['../alignment__score__matrix__one__column__base_8hpp.html', 1, '']]], │ │ │ │ │ ['alignment_5fscore_5fmatrix_5fproxy_2ehpp_167', ['alignment_score_matrix_proxy.hpp', ['../alignment__score__matrix__proxy_8hpp.html', 1, '']]], │ │ │ │ │ ['alignment_5ftrace_5fmatrix_5fbase_2ehpp_168', ['alignment_trace_matrix_base.hpp', ['../alignment__trace__matrix__base_8hpp.html', 1, '']]], │ │ │ │ │ @@ -255,43 +255,43 @@ │ │ │ │ │ ['alignments_172', ['alignments', ['../group__alignment__pairwise.html#autotoc_md21', 1, 'Computing banded alignments'], │ │ │ │ │ ['../tutorial_pairwise_alignment.html#autotoc_md177', 1, 'Computing pairwise alignments'], │ │ │ │ │ ['../group__alignment__pairwise.html#autotoc_md13', 1, 'Configuring pairwise alignments'], │ │ │ │ │ ['../group__alignment__pairwise.html#autotoc_md14', 1, 'Global and local alignments'], │ │ │ │ │ ['../group__alignment__pairwise.html', 1, 'Pairwise Alignments'] │ │ │ │ │ ]], │ │ │ │ │ ['alignments_20represented_20as_20cigar_20string_20used_20in_20sam_20bam_20files_173', ['Alignments represented as CIGAR String used in SAM/BAM Files', ['../group__alignment.html#autotoc_md3', 1, '']]], │ │ │ │ │ - ['all_174', ['all', ['https://en.cppreference.com/w/cpp/utility/bitset/all_any_none.html', 0, 'std::bitset::all()'], │ │ │ │ │ - ['../classseqan3_1_1dynamic__bitset.html#a465a71ab18609a17bcce4e4ffbb9e4e9', 1, 'seqan3::dynamic_bitset::all()'] │ │ │ │ │ + ['all_174', ['all', ['../classseqan3_1_1dynamic__bitset.html#a465a71ab18609a17bcce4e4ffbb9e4e9', 1, 'seqan3::dynamic_bitset::all()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/utility/bitset/all_any_none.html', 0, 'std::bitset::all()'] │ │ │ │ │ ]], │ │ │ │ │ ['all_20seqan_20documentation_20snippets_175', ['All SeqAn documentation snippets', ['../cookbook.html#autotoc_md70', 1, '']]], │ │ │ │ │ ['all_20unknown_20characters_20to_20a_176', ['A custom dna4 alphabet that converts all unknown characters to A', ['../cookbook.html#cookbook_custom_dna4_alphabet', 1, '']]], │ │ │ │ │ ['all_5fof_177', ['all_of', ['https://en.cppreference.com/w/cpp/algorithm/all_any_none_of.html', 0, 'std']]], │ │ │ │ │ ['all_5fview_2ehpp_178', ['all_view.hpp', ['../all__view_8hpp.html', 1, '']]], │ │ │ │ │ - ['allocate_179', ['allocate', ['https://en.cppreference.com/w/cpp/memory/scoped_allocator_adaptor/allocate.html', 0, 'std::scoped_allocator_adaptor::allocate()'], │ │ │ │ │ + ['allocate_179', ['allocate', ['https://en.cppreference.com/w/cpp/memory/memory_resource/allocate.html', 0, 'std::pmr::unsynchronized_pool_resource::allocate()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/memory/allocator_traits/allocate.html', 0, 'std::allocator_traits::allocate()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/experimental/memory_resource/allocate.html', 0, 'std::experimental::pmr::memory_resource::allocate()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/memory/allocator/allocate.html', 0, 'std::allocator::allocate()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/memory/memory_resource/allocate.html', 0, 'std::pmr::memory_resource::allocate()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/memory/memory_resource/allocate.html', 0, 'std::pmr::unsynchronized_pool_resource::allocate()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/memory/memory_resource/allocate.html', 0, 'std::pmr::monotonic_buffer_resource::allocate()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/memory/memory_resource/allocate.html', 0, 'std::pmr::synchronized_pool_resource::allocate()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/memory/polymorphic_allocator/allocate.html', 0, 'std::pmr::polymorphic_allocator::allocate()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/memory/scoped_allocator_adaptor/allocate.html', 0, 'std::scoped_allocator_adaptor::allocate()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/memory/memory_resource/allocate.html', 0, 'std::pmr::monotonic_buffer_resource::allocate()'], │ │ │ │ │ ['../classseqan3_1_1aligned__allocator.html#a3806a56b3721459822463f6aa894f24a', 1, 'seqan3::aligned_allocator::allocate()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/memory/memory_resource/allocate.html', 0, 'std::pmr::synchronized_pool_resource::allocate()'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/memory/memory_resource/allocate.html', 0, 'std::pmr::memory_resource::allocate()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/experimental/memory_resource/allocate.html', 0, 'std::experimental::pmr::memory_resource::allocate()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/memory/allocator/allocate.html', 0, 'std::allocator::allocate()'] │ │ │ │ │ ]], │ │ │ │ │ ['allocate_5fshared_180', ['allocate_shared', ['https://en.cppreference.com/w/cpp/memory/shared_ptr/allocate_shared.html', 0, 'std']]], │ │ │ │ │ ['allocator_181', ['allocator', ['https://en.cppreference.com/w/cpp/memory/allocator/allocator.html', 0, 'std::allocator::allocator()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/memory/allocator.html', 0, 'std::allocator'] │ │ │ │ │ ]], │ │ │ │ │ ['allocator_5farg_5ft_182', ['allocator_arg_t', ['https://en.cppreference.com/w/cpp/memory/allocator_arg_t.html', 0, 'std']]], │ │ │ │ │ ['allocator_5ftraits_183', ['allocator_traits', ['https://en.cppreference.com/w/cpp/memory/allocator_traits.html', 0, 'std']]], │ │ │ │ │ ['alpha_184', ['alpha', ['https://en.cppreference.com/w/cpp/numeric/random/gamma_distribution/params.html', 0, 'std::gamma_distribution']]], │ │ │ │ │ ['alphabet_185', ['alphabet', ['../group__alphabet.html', 1, 'Alphabet'], │ │ │ │ │ - ['../interfaceseqan3_1_1alphabet.html', 1, 'alphabet'], │ │ │ │ │ - ['../structseqan3_1_1custom_1_1alphabet.html', 1, 'seqan3::custom::alphabet< t >'], │ │ │ │ │ ['../howto_write_an_alphabet.html#autotoc_md97', 1, 'alphabet'], │ │ │ │ │ + ['../structseqan3_1_1custom_1_1alphabet.html', 1, 'seqan3::custom::alphabet< t >'], │ │ │ │ │ + ['../interfaceseqan3_1_1alphabet.html', 1, 'alphabet'], │ │ │ │ │ ['../cookbook.html#cookbook_convert_alphabet_range', 1, 'Converting a range of an alphabet'], │ │ │ │ │ ['../tutorial_alphabets.html#autotoc_md145', 1, 'Gap alphabet'], │ │ │ │ │ ['../howto_write_an_alphabet.html', 1, 'How to write your own alphabet'], │ │ │ │ │ ['../howto_write_an_alphabet.html#autotoc_md94', 1, 'Step by step: Create your own alphabet'], │ │ │ │ │ ['../tutorial_alphabets.html#autotoc_md143', 1, 'The amino acid alphabet'] │ │ │ │ │ ]], │ │ │ │ │ ['alphabet_20base_20template_186', ['Shortcut: alphabet base template', ['../howto_write_an_alphabet.html#autotoc_md98', 1, '']]], │ │ │ ├── ./usr/share/doc/libseqan3-dev/html/search/all_a.js │ │ │ │ ├── js-beautify {} │ │ │ │ │ @@ -1,74 +1,74 @@ │ │ │ │ │ var searchData = [ │ │ │ │ │ ['c_0', ['Modern C++', ['../tutorial_first_example.html#autotoc_md118', 1, '']]], │ │ │ │ │ ['c_20concepts_1', ['C++ Concepts', ['../tutorial_concepts.html', 1, '']]], │ │ │ │ │ ['c16rtomb_2', ['c16rtomb', ['https://en.cppreference.com/w/cpp/string/multibyte/c16rtomb.html', 0, 'std']]], │ │ │ │ │ ['c32rtomb_3', ['c32rtomb', ['https://en.cppreference.com/w/cpp/string/multibyte/c32rtomb.html', 0, 'std']]], │ │ │ │ │ - ['c_5fstr_4', ['c_str', ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::string::c_str()'], │ │ │ │ │ + ['c_5fstr_4', ['c_str', ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::pmr::u32string::c_str()'], │ │ │ │ │ + ['../classseqan3_1_1small__string.html#a212ff63b71805f37a3d423b5992c4461', 1, 'seqan3::small_string::c_str()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::wstring::c_str()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::u32string::c_str()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::u16string::c_str()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::string::c_str()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::pmr::wstring::c_str()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::pmr::u32string::c_str()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::pmr::u16string::c_str()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::pmr::string::c_str()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/filesystem/path/native.html', 0, 'std::filesystem::path::c_str()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/experimental/fs/path/native.html', 0, 'std::experimental::filesystem::path::c_str()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::basic_string::c_str()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::u16string::c_str()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::u32string::c_str()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/c_str.html', 0, 'std::wstring::c_str()'], │ │ │ │ │ - ['../classseqan3_1_1small__string.html#a212ff63b71805f37a3d423b5992c4461', 1, 'seqan3::small_string::c_str()'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/experimental/fs/path/native.html', 0, 'std::experimental::filesystem::path::c_str()'] │ │ │ │ │ ]], │ │ │ │ │ ['calculate_20edit_20distance_20for_20a_20set_20of_20sequences_5', ['Calculate edit distance for a set of sequences', ['../cookbook.html#autotoc_md62', 1, '']]], │ │ │ │ │ ['call_5fonce_6', ['call_once', ['https://en.cppreference.com/w/cpp/thread/call_once.html', 0, 'std']]], │ │ │ │ │ ['callback_7', ['callback', ['../classseqan3_1_1align__cfg_1_1on__result.html#af823cf9f3e254bf90c7f570be06de4c9', 1, 'seqan3::align_cfg::on_result::callback'], │ │ │ │ │ ['../classseqan3_1_1search__cfg_1_1on__result.html#aee786888025745d593991baedef34116', 1, 'seqan3::search_cfg::on_result::callback'], │ │ │ │ │ ['../group__alignment__pairwise.html#autotoc_md23', 1, 'User callback'] │ │ │ │ │ ]], │ │ │ │ │ ['calloc_8', ['calloc', ['https://en.cppreference.com/w/cpp/memory/c/calloc.html', 0, 'std']]], │ │ │ │ │ - ['canonical_9', ['canonical', ['https://en.cppreference.com/w/cpp/experimental/fs/canonical.html', 0, 'std::experimental::filesystem::canonical()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/filesystem/canonical.html', 0, 'std::filesystem::canonical()'], │ │ │ │ │ - ['../namespaceseqan3.html#a0248536c111a0a240d04892a92e24302a9f3fda2fef6dda85970e12ce9a9b8cbe', 1, 'seqan3::canonical'] │ │ │ │ │ + ['canonical_9', ['canonical', ['https://en.cppreference.com/w/cpp/filesystem/canonical.html', 0, 'std::filesystem::canonical()'], │ │ │ │ │ + ['../namespaceseqan3.html#a0248536c111a0a240d04892a92e24302a9f3fda2fef6dda85970e12ce9a9b8cbe', 1, 'seqan3::canonical'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/experimental/fs/canonical.html', 0, 'std::experimental::filesystem::canonical()'] │ │ │ │ │ ]], │ │ │ │ │ ['capabilities_10', ['Capabilities', ['../tutorial_index_search.html#autotoc_md187', 1, '']]], │ │ │ │ │ - ['capacity_11', ['capacity', ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::u32string::capacity()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::string::capacity()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/vector/capacity.html', 0, 'std::vector::capacity()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::u16string::capacity()'], │ │ │ │ │ + ['capacity_11', ['capacity', ['../classseqan3_1_1small__string.html#a24cefa1125a6d20552d0839979d5d2ab', 1, 'seqan3::small_string::capacity()'], │ │ │ │ │ ['../classseqan3_1_1small__vector.html#a341c0e51c78e5502fdca8a361337945a', 1, 'seqan3::small_vector::capacity()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::wstring::capacity()'], │ │ │ │ │ - ['../classseqan3_1_1bitpacked__sequence.html#a7e0e5172d00c99a593294e11496c9e23', 1, 'seqan3::bitpacked_sequence::capacity()'], │ │ │ │ │ - ['../classseqan3_1_1concatenated__sequences.html#a03e329c1127cdf3be15f87a0c49c076d', 1, 'seqan3::concatenated_sequences::capacity()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::basic_string::capacity()'], │ │ │ │ │ ['../classseqan3_1_1dynamic__bitset.html#a6e49e72cb70732c427c54820415f938f', 1, 'seqan3::dynamic_bitset::capacity()'], │ │ │ │ │ - ['../classseqan3_1_1small__string.html#a24cefa1125a6d20552d0839979d5d2ab', 1, 'seqan3::small_string::capacity()'], │ │ │ │ │ + ['../classseqan3_1_1concatenated__sequences.html#a03e329c1127cdf3be15f87a0c49c076d', 1, 'seqan3::concatenated_sequences::capacity()'], │ │ │ │ │ + ['../classseqan3_1_1bitpacked__sequence.html#a7e0e5172d00c99a593294e11496c9e23', 1, 'seqan3::bitpacked_sequence::capacity()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::wstring::capacity()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/vector/capacity.html', 0, 'std::vector::capacity()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::u32string::capacity()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::u16string::capacity()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::pmr::wstring::capacity()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/vector/capacity.html', 0, 'std::pmr::vector::capacity()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::pmr::u32string::capacity()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::pmr::u16string::capacity()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::pmr::string::capacity()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::basic_string::capacity()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/capacity.html', 0, 'std::string::capacity()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/filesystem/space_info.html', 0, 'std::filesystem::space_info::capacity'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/experimental/fs/space_info.html', 0, 'std::experimental::filesystem::space_info::capacity'] │ │ │ │ │ ]], │ │ │ │ │ ['case_5finsensitive_5fstring_5fends_5fwith_12', ['case_insensitive_string_ends_with', ['../classseqan3_1_1file__validator__base.html#a14aff59a7e093d9b612067992c18d5f3', 1, 'seqan3::file_validator_base']]], │ │ │ │ │ ['cassert_13', ['cassert', ['https://en.cppreference.com/w/cpp/header/cassert.html', 0, '']]], │ │ │ │ │ - ['catalog_14', ['catalog', ['https://en.cppreference.com/w/cpp/locale/messages_base.html', 0, 'std::messages_byname::catalog'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/locale/messages_base.html', 0, 'std::messages_base::catalog'], │ │ │ │ │ + ['catalog_14', ['catalog', ['https://en.cppreference.com/w/cpp/locale/messages_base.html', 0, 'std::messages_base::catalog'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/locale/messages_base.html', 0, 'std::messages_byname::catalog'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/messages_base.html', 0, 'std::messages::catalog'] │ │ │ │ │ ]], │ │ │ │ │ ['category_15', ['category', ['https://en.cppreference.com/w/cpp/error/error_code/category.html', 0, 'std::error_code::category()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/error/error_condition/category.html', 0, 'std::error_condition::category()'] │ │ │ │ │ ]], │ │ │ │ │ - ['cauchy_5fdistribution_16', ['cauchy_distribution', ['https://en.cppreference.com/w/cpp/numeric/random/cauchy_distribution/cauchy_distribution.html', 0, 'std::cauchy_distribution::cauchy_distribution()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/numeric/random/cauchy_distribution.html', 0, 'std::cauchy_distribution'] │ │ │ │ │ + ['cauchy_5fdistribution_16', ['cauchy_distribution', ['https://en.cppreference.com/w/cpp/numeric/random/cauchy_distribution.html', 0, 'std::cauchy_distribution'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/numeric/random/cauchy_distribution/cauchy_distribution.html', 0, 'std::cauchy_distribution::cauchy_distribution()'] │ │ │ │ │ ]], │ │ │ │ │ ['cbefore_5fbegin_17', ['cbefore_begin', ['https://en.cppreference.com/w/cpp/container/forward_list/before_begin.html', 0, 'std::forward_list::cbefore_begin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/forward_list/before_begin.html', 0, 'std::pmr::forward_list::cbefore_begin()'] │ │ │ │ │ ]], │ │ │ │ │ - ['cbegin_18', ['cbegin', ['https://en.cppreference.com/w/cpp/iterator/begin.html', 0, 'std::cbegin()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/unordered_map/begin.html', 0, 'std::unordered_map::cbegin()'], │ │ │ │ │ + ['cbegin_18', ['cbegin', ['https://en.cppreference.com/w/cpp/container/unordered_map/begin.html', 0, 'std::unordered_map::cbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/array/begin.html', 0, 'std::array::cbegin()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/iterator/begin.html', 0, 'std::cbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multimap/begin.html', 0, 'std::unordered_multimap::cbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multiset/begin.html', 0, 'std::pmr::unordered_multiset::cbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_set/begin.html', 0, 'std::pmr::unordered_set::cbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/vector/begin.html', 0, 'std::pmr::vector::cbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/begin.html', 0, 'std::pmr::wstring::cbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/set/begin.html', 0, 'std::set::cbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/regex/match_results/begin.html', 0, 'std::smatch::cbegin()'], │ │ │ │ │ @@ -127,17 +127,17 @@ │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multiset/begin2.html', 0, 'std::unordered_multiset::cbegin(int)()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_set/begin2.html', 0, 'std::unordered_set::cbegin(int)()'] │ │ │ │ │ ]], │ │ │ │ │ ['cbrt_20', ['cbrt', ['https://en.cppreference.com/w/cpp/numeric/math/cbrt.html', 0, 'std']]], │ │ │ │ │ ['ccomplex_21', ['ccomplex', ['https://en.cppreference.com/w/cpp/header/ccomplex.html', 0, '']]], │ │ │ │ │ ['cctype_22', ['cctype', ['https://en.cppreference.com/w/cpp/header/cctype.html', 0, '']]], │ │ │ │ │ ['ceil_23', ['ceil', ['https://en.cppreference.com/w/cpp/numeric/math/ceil.html', 0, 'std']]], │ │ │ │ │ - ['cend_24', ['cend', ['https://en.cppreference.com/w/cpp/string/basic_string/end.html', 0, 'std::pmr::u32string::cend()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/unordered_multimap/end.html', 0, 'std::pmr::unordered_multimap::cend()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/unordered_map/end.html', 0, 'std::pmr::unordered_map::cend()'], │ │ │ │ │ + ['cend_24', ['cend', ['https://en.cppreference.com/w/cpp/container/unordered_map/end.html', 0, 'std::pmr::unordered_map::cend()'], │ │ │ │ │ + ['../classseqan3_1_1small__vector.html#aadf49983f6e8a3105f763d7bbba56853', 1, 'seqan3::small_vector::cend()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/end.html', 0, 'std::pmr::u32string::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/end.html', 0, 'std::pmr::u16string::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/end.html', 0, 'std::pmr::string::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/set/end.html', 0, 'std::pmr::set::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/multiset/end.html', 0, 'std::pmr::multiset::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/multimap/end.html', 0, 'std::pmr::multimap::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/map/end.html', 0, 'std::pmr::map::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/list/end.html', 0, 'std::pmr::list::cend()'], │ │ │ │ │ @@ -155,46 +155,46 @@ │ │ │ │ │ ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/end.html', 0, 'std::experimental::string_view::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/end.html', 0, 'std::experimental::basic_string_view::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/deque/end.html', 0, 'std::deque::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/regex/match_results/end.html', 0, 'std::cmatch::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string_view/end.html', 0, 'std::basic_string_view::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/end.html', 0, 'std::basic_string::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/array/end.html', 0, 'std::array::cend()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/unordered_set/end.html', 0, 'std::pmr::unordered_set::cend()'], │ │ │ │ │ - ['../classseqan3_1_1small__vector.html#aadf49983f6e8a3105f763d7bbba56853', 1, 'seqan3::small_vector::cend()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/unordered_multiset/end.html', 0, 'std::pmr::unordered_multiset::cend()'], │ │ │ │ │ ['../classseqan3_1_1dynamic__bitset.html#ab125a4f3aec0bd0e460d7a7da65982bd', 1, 'seqan3::dynamic_bitset::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/iterator/end.html', 0, 'std::cend()'], │ │ │ │ │ ['../classseqan3_1_1concatenated__sequences.html#a8a8741a9504e0740f611d1f760ce2311', 1, 'seqan3::concatenated_sequences::cend()'], │ │ │ │ │ ['../classseqan3_1_1bitpacked__sequence.html#ac2c3feedcbd274ffaa6409f4698f33b8', 1, 'seqan3::bitpacked_sequence::cend()'], │ │ │ │ │ ['../classseqan3_1_1gap__decorator.html#a340cb8713ffb2ddfe6df425693da3558', 1, 'seqan3::gap_decorator::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string_view/end.html', 0, 'std::wstring_view::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/end.html', 0, 'std::wstring::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/regex/match_results/end.html', 0, 'std::wsmatch::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/regex/match_results/end.html', 0, 'std::wcmatch::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/vector/end.html', 0, 'std::vector::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_set/end.html', 0, 'std::unordered_set::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multiset/end.html', 0, 'std::unordered_multiset::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multimap/end.html', 0, 'std::unordered_multimap::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string_view/end.html', 0, 'std::u32string_view::cend()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/unordered_map/end.html', 0, 'std::unordered_map::cend()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/unordered_multiset/end.html', 0, 'std::pmr::unordered_multiset::cend()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/unordered_multimap/end.html', 0, 'std::pmr::unordered_multimap::cend()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/unordered_set/end.html', 0, 'std::pmr::unordered_set::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/vector/end.html', 0, 'std::pmr::vector::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/end.html', 0, 'std::pmr::wstring::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/set/end.html', 0, 'std::set::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/regex/match_results/end.html', 0, 'std::smatch::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/end.html', 0, 'std::string::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string_view/end.html', 0, 'std::string_view::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/end.html', 0, 'std::u16string::cend()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string_view/end.html', 0, 'std::u16string_view::cend()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/end.html', 0, 'std::u32string::cend()'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/end.html', 0, 'std::u32string::cend()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/unordered_map/end.html', 0, 'std::unordered_map::cend()'] │ │ │ │ │ ]], │ │ │ │ │ - ['cend_28int_29_25', ['cend(int)', ['https://en.cppreference.com/w/cpp/container/unordered_set/end2.html', 0, 'std::unordered_set::cend(int)()'], │ │ │ │ │ + ['cend_28int_29_25', ['cend(int)', ['https://en.cppreference.com/w/cpp/container/unordered_map/end2.html', 0, 'std::pmr::unordered_map::cend(int)()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/unordered_set/end2.html', 0, 'std::unordered_set::cend(int)()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multiset/end2.html', 0, 'std::unordered_multiset::cend(int)()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multimap/end2.html', 0, 'std::unordered_multimap::cend(int)()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/unordered_map/end2.html', 0, 'std::pmr::unordered_map::cend(int)()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_map/end2.html', 0, 'std::unordered_map::cend(int)()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_set/end2.html', 0, 'std::pmr::unordered_set::cend(int)()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multiset/end2.html', 0, 'std::pmr::unordered_multiset::cend(int)()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multimap/end2.html', 0, 'std::pmr::unordered_multimap::cend(int)()'] │ │ │ │ │ ]], │ │ │ │ │ ['centi_26', ['centi', ['https://en.cppreference.com/w/cpp/numeric/ratio/ratio.html', 0, 'std']]], │ │ │ │ │ ['cereal_27', ['Serialise data structures with cereal', ['../cookbook.html#autotoc_md68', 1, '']]], │ │ │ │ │ @@ -237,111 +237,111 @@ │ │ │ │ │ ['../classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75', 1, 'seqan3::alphabet_base::char_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/collate.html', 0, 'std::collate_byname::char_type'], │ │ │ │ │ ['../classseqan3_1_1qualified.html#a375874de1d3faaff21702cf15df5113f', 1, 'seqan3::qualified::char_type'], │ │ │ │ │ ['../classseqan3_1_1structured__aa.html#a81a30be12c766241730dbce7dccf5288', 1, 'seqan3::structured_aa::char_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/collate.html', 0, 'std::collate::char_type'], │ │ │ │ │ ['../classseqan3_1_1structured__rna.html#a93047e49ad4f9b84029b04c76ac0134a', 1, 'seqan3::structured_rna::char_type'], │ │ │ │ │ ['../interfaceseqan3_1_1output__stream__over.html#aca93e7e876f4262ea9f74dc7e0623a9c', 1, 'output_stream_over::char_type()'], │ │ │ │ │ - ['../interfaceseqan3_1_1input__stream__over.html#aca93e7e876f4262ea9f74dc7e0623a9c', 1, 'input_stream_over::char_type()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/time_put.html', 0, 'std::time_put_byname::char_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/time_put.html', 0, 'std::time_put::char_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/time_get.html', 0, 'std::time_get_byname::char_type'], │ │ │ │ │ + ['../interfaceseqan3_1_1input__stream__over.html#aca93e7e876f4262ea9f74dc7e0623a9c', 1, 'input_stream_over::char_type()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/time_get.html', 0, 'std::time_get::char_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/numpunct.html', 0, 'std::numpunct_byname::char_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/num_put.html', 0, 'std::num_put::char_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/messages.html', 0, 'std::messages::char_type'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/locale/num_get.html', 0, 'std::num_get::char_type'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/locale/moneypunct.html', 0, 'std::moneypunct_byname::char_type'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/locale/moneypunct.html', 0, 'std::moneypunct::char_type'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/locale/money_put.html', 0, 'std::money_put::char_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/messages.html', 0, 'std::messages_byname::char_type'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/locale/numpunct.html', 0, 'std::numpunct::char_type'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/money_get.html', 0, 'std::money_get::char_type'], │ │ │ │ │ - ['../classseqan3_1_1masked.html#a130cbe935b287b023ad1fcb37ff645f3', 1, 'seqan3::masked::char_type'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/locale/money_put.html', 0, 'std::money_put::char_type'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/locale/moneypunct.html', 0, 'std::moneypunct::char_type'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/locale/moneypunct.html', 0, 'std::moneypunct_byname::char_type'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/locale/num_get.html', 0, 'std::num_get::char_type'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/locale/numpunct.html', 0, 'std::numpunct::char_type'] │ │ │ │ │ + ['../classseqan3_1_1masked.html#a130cbe935b287b023ad1fcb37ff645f3', 1, 'seqan3::masked::char_type'] │ │ │ │ │ ]], │ │ │ │ │ ['character_20operations_51', ['Builtin Character Operations', ['../group__utility__char__operations.html', 1, '']]], │ │ │ │ │ ['characters_20to_20a_52', ['A custom dna4 alphabet that converts all unknown characters to A', ['../cookbook.html#cookbook_custom_dna4_alphabet', 1, '']]], │ │ │ │ │ - ['charconv_53', ['charconv', ['../group__std__charconv.html', 1, 'charconv'], │ │ │ │ │ - ['../charconv.html', 1, '(Global Namespace)'] │ │ │ │ │ + ['charconv_53', ['charconv', ['../charconv.html', 1, '(Global Namespace)'], │ │ │ │ │ + ['../group__std__charconv.html', 1, 'charconv'] │ │ │ │ │ ]], │ │ │ │ │ ['check_20feature_54', ['The argument parser version check feature', ['../howto_porting.html#autotoc_md79', 1, '']]], │ │ │ │ │ ['chi_5fsquared_5fdistribution_55', ['chi_squared_distribution', ['https://en.cppreference.com/w/cpp/numeric/random/chi_squared_distribution.html', 0, 'std::chi_squared_distribution'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/numeric/random/chi_squared_distribution/chi_squared_distribution.html', 0, 'std::chi_squared_distribution::chi_squared_distribution()'] │ │ │ │ │ ]], │ │ │ │ │ ['chrono_56', ['chrono', ['https://en.cppreference.com/w/cpp/header/chrono.html', 0, '']]], │ │ │ │ │ ['chunk_57', ['chunk', ['../group__utility__views.html#gabfb861700c8f92cb42616095d322a2f1', 1, 'seqan3::views']]], │ │ │ │ │ ['chunk_2ehpp_58', ['chunk.hpp', ['../chunk_8hpp.html', 1, '']]], │ │ │ │ │ ['chunks_59', ['chunks', ['../tutorial_sequence_file.html#autotoc_md168', 1, 'Reading a file in chunks'], │ │ │ │ │ ['../cookbook.html#autotoc_md55', 1, 'Reading records in chunks'] │ │ │ │ │ ]], │ │ │ │ │ - ['cigar_60', ['cigar', ['../classseqan3_1_1cigar.html#abe5142bcf6d7c3da49afa9c35d82e79e', 1, 'seqan3::cigar::cigar(component_type const alph) noexcept'], │ │ │ │ │ + ['cigar_60', ['cigar', ['../group__io.html#gga2511b22375848e1bedbc5013c952a817a5e5bc84c4049b2e4234bec6612f4ac5b', 1, 'seqan3::cigar'], │ │ │ │ │ ['../classseqan3_1_1cigar.html#ab5172e726aae577238436bb55aca2a05', 1, 'seqan3::cigar::cigar(cigar const &) noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1cigar.html#a4ca8d029a29fdd90359cb636e86d50fb', 1, 'seqan3::cigar::cigar(cigar &&) noexcept=default'], │ │ │ │ │ + ['../classseqan3_1_1cigar.html#abe5142bcf6d7c3da49afa9c35d82e79e', 1, 'seqan3::cigar::cigar(component_type const alph) noexcept'], │ │ │ │ │ ['../classseqan3_1_1cigar.html#a7e78b248fed03094ea6746a0c9b0bab9', 1, 'seqan3::cigar::cigar() noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1cigar.html', 1, 'seqan3::cigar'], │ │ │ │ │ - ['../group__alphabet__cigar.html', 1, 'CIGAR'], │ │ │ │ │ - ['../group__io.html#gga2511b22375848e1bedbc5013c952a817a5e5bc84c4049b2e4234bec6612f4ac5b', 1, 'seqan3::cigar'] │ │ │ │ │ + ['../group__alphabet__cigar.html', 1, 'CIGAR'] │ │ │ │ │ ]], │ │ │ │ │ ['cigar_20conversion_61', ['CIGAR Conversion', ['../group__cigar__conversion.html', 1, '']]], │ │ │ │ │ ['cigar_20information_20from_20a_20sam_20file_20and_20constructing_20an_20alignment_62', ['Reading the CIGAR information from a SAM file and constructing an alignment', ['../cookbook.html#autotoc_md64', 1, '']]], │ │ │ │ │ ['cigar_20information_20into_20an_20alignment_63', ['Transforming the CIGAR information into an alignment', ['../tutorial_sam_file.html#autotoc_md208', 1, '']]], │ │ │ │ │ ['cigar_20string_64', ['cigar string', ['../group__cigar__conversion.html#autotoc_md6', 1, 'Creating an alignment from a CIGAR String'], │ │ │ │ │ ['../group__cigar__conversion.html#autotoc_md5', 1, 'Quick background on the CIGAR string'], │ │ │ │ │ ['../tutorial_sam_file.html#autotoc_md207', 1, 'Reading the CIGAR string'] │ │ │ │ │ ]], │ │ │ │ │ ['cigar_20string_20from_20an_20alignment_65', ['Creating a CIGAR string from an alignment', ['../group__cigar__conversion.html#autotoc_md7', 1, '']]], │ │ │ │ │ ['cigar_20string_20used_20in_20sam_20bam_20files_66', ['Alignments represented as CIGAR String used in SAM/BAM Files', ['../group__alignment.html#autotoc_md3', 1, '']]], │ │ │ │ │ ['cigar_5fclipped_5fbases_67', ['cigar_clipped_bases', ['../structseqan3_1_1cigar__clipped__bases.html', 1, 'seqan3']]], │ │ │ │ │ ['cigar_5ffrom_5falignment_68', ['cigar_from_alignment', ['../group__cigar__conversion.html#ga1fbec9125252cdbed52842a4164b957a', 1, 'seqan3']]], │ │ │ │ │ ['cigar_5ffrom_5falignment_2ehpp_69', ['cigar_from_alignment.hpp', ['../cigar__from__alignment_8hpp.html', 1, '']]], │ │ │ │ │ ['cigar_5foperation_70', ['cigar_operation', ['../classseqan3_1_1exposition__only_1_1cigar__operation.html', 1, 'seqan3::exposition_only::cigar_operation'], │ │ │ │ │ - ['../classseqan3_1_1exposition__only_1_1cigar__operation.html#af0b2e133e6bbbcc778cdce32645b5ba0', 1, 'seqan3::exposition_only::cigar_operation::cigar_operation(cigar_operation &&) noexcept=default'], │ │ │ │ │ + ['../classseqan3_1_1exposition__only_1_1cigar__operation.html#a51412f1e3f32f56ad356b16fb3656814', 1, 'seqan3::exposition_only::cigar_operation::cigar_operation() noexcept=default'], │ │ │ │ │ ['../classseqan3_1_1exposition__only_1_1cigar__operation.html#ad23feea3062c3a53b37cad4d5857d5a2', 1, 'seqan3::exposition_only::cigar_operation::cigar_operation(cigar_operation const &) noexcept=default'], │ │ │ │ │ - ['../classseqan3_1_1exposition__only_1_1cigar__operation.html#a51412f1e3f32f56ad356b16fb3656814', 1, 'seqan3::exposition_only::cigar_operation::cigar_operation() noexcept=default'] │ │ │ │ │ + ['../classseqan3_1_1exposition__only_1_1cigar__operation.html#af0b2e133e6bbbcc778cdce32645b5ba0', 1, 'seqan3::exposition_only::cigar_operation::cigar_operation(cigar_operation &&) noexcept=default'] │ │ │ │ │ ]], │ │ │ │ │ ['cigar_5foperation_2ehpp_71', ['cigar_operation.hpp', ['../cigar__operation_8hpp.html', 1, '']]], │ │ │ │ │ ['cigar_5foperation_5ftable_72', ['cigar_operation_table', ['../md__2build_2reproducible-path_2seqan3-3_83_80_09ds_2doc_2fragments_2cigar__operation__table.html', 1, '']]], │ │ │ │ │ ['cigar_5fsequence_73', ['cigar_sequence', ['../classseqan3_1_1sam__record.html#a97ebd9bd68aebc95a427ca32616710c0', 1, 'seqan3::sam_record::cigar_sequence() const &'], │ │ │ │ │ - ['../classseqan3_1_1sam__record.html#a18af79df2ecffe8461d84ecab39b32b2', 1, 'seqan3::sam_record::cigar_sequence() &'], │ │ │ │ │ + ['../classseqan3_1_1sam__record.html#a234e3ef36d6915beda3cae7cf1aa6bed', 1, 'seqan3::sam_record::cigar_sequence() &&'], │ │ │ │ │ ['../classseqan3_1_1sam__record.html#ab03c1d098c4c04e4c3d67ed54f02c368', 1, 'seqan3::sam_record::cigar_sequence() const &&'], │ │ │ │ │ - ['../classseqan3_1_1sam__record.html#a234e3ef36d6915beda3cae7cf1aa6bed', 1, 'seqan3::sam_record::cigar_sequence() &&'] │ │ │ │ │ + ['../classseqan3_1_1sam__record.html#a18af79df2ecffe8461d84ecab39b32b2', 1, 'seqan3::sam_record::cigar_sequence() &'] │ │ │ │ │ ]], │ │ │ │ │ ['cigar_5ftype_74', ['cigar_type', ['../classseqan3_1_1sam__file__input.html#ab26ea93c79a8f49be413ed238ad3d7da', 1, 'seqan3::sam_file_input']]], │ │ │ │ │ ['cin_75', ['cin', ['https://en.cppreference.com/w/cpp/io/cin.html', 0, 'std']]], │ │ │ │ │ ['cinttypes_76', ['cinttypes', ['https://en.cppreference.com/w/cpp/header/cinttypes.html', 0, '']]], │ │ │ │ │ ['ciso646_77', ['ciso646', ['https://en.cppreference.com/w/cpp/header/ciso646.html', 0, '']]], │ │ │ │ │ ['citation_78', ['citation', ['../structseqan3_1_1argument__parser__meta__data.html#aa95a927e0d601834567e0bdeac2a5e88', 1, 'seqan3::argument_parser_meta_data']]], │ │ │ │ │ ['citing_79', ['Citing', ['../about_citing.html', 1, '']]], │ │ │ │ │ ['clamp_80', ['clamp', ['https://en.cppreference.com/w/cpp/algorithm/clamp.html', 0, 'std']]], │ │ │ │ │ ['class_81', ['class', ['../howto_write_an_alphabet.html#autotoc_md100', 1, 'Implementation as enum class'], │ │ │ │ │ ['../howto_write_an_alphabet.html#autotoc_md101', 1, 'Implementation of a non-default-constructible class'], │ │ │ │ │ ['../group__argument__parser.html#autotoc_md27', 1, 'The Argument Parser Class'] │ │ │ │ │ ]], │ │ │ │ │ ['class_20template_82', ['1. The view class template', ['../howto_write_a_view.html#autotoc_md91', 1, '']]], │ │ │ │ │ ['classic_83', ['classic', ['https://en.cppreference.com/w/cpp/locale/locale/classic.html', 0, 'std::locale']]], │ │ │ │ │ - ['clear_84', ['clear', ['https://en.cppreference.com/w/cpp/container/multimap/clear.html', 0, 'std::multimap::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::ostringstream::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/map/clear.html', 0, 'std::map::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/list/clear.html', 0, 'std::list::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::istrstream::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::istringstream::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::istream::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::iostream::clear()'], │ │ │ │ │ + ['clear_84', ['clear', ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::ostream::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::ifstream::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::iostream::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::istream::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::istringstream::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/multiset/clear.html', 0, 'std::pmr::multiset::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::istrstream::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/list/clear.html', 0, 'std::list::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/map/clear.html', 0, 'std::map::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/multimap/clear.html', 0, 'std::multimap::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/multiset/clear.html', 0, 'std::multiset::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::ofstream::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::ostream::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/multimap/clear.html', 0, 'std::pmr::multimap::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/list/clear.html', 0, 'std::pmr::list::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::ostringstream::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::ostrstream::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/deque/clear.html', 0, 'std::pmr::deque::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/forward_list/clear.html', 0, 'std::pmr::forward_list::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/string/basic_string/clear.html', 0, 'std::u16string::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/list/clear.html', 0, 'std::pmr::list::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/multimap/clear.html', 0, 'std::pmr::multimap::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/map/clear.html', 0, 'std::pmr::map::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/multiset/clear.html', 0, 'std::pmr::multiset::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/forward_list/clear.html', 0, 'std::pmr::forward_list::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::strstream::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::wofstream::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multiset/clear.html', 0, 'std::unordered_multiset::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_set/clear.html', 0, 'std::unordered_set::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/vector/clear.html', 0, 'std::vector::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::wfstream::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::wifstream::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::wiostream::clear()'], │ │ │ │ │ @@ -364,16 +364,16 @@ │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multiset/clear.html', 0, 'std::pmr::unordered_multiset::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_set/clear.html', 0, 'std::pmr::unordered_set::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/vector/clear.html', 0, 'std::pmr::vector::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/set/clear.html', 0, 'std::pmr::set::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/set/clear.html', 0, 'std::set::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/clear.html', 0, 'std::string::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::stringstream::clear()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::strstream::clear()'], │ │ │ │ │ ['../classseqan3_1_1interleaved__bloom__filter.html#a7208171042aa509af5b25598b2b171d1', 1, 'seqan3::interleaved_bloom_filter::clear()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/string/basic_string/clear.html', 0, 'std::u16string::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/clear.html', 0, 'std::u32string::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_map/clear.html', 0, 'std::unordered_map::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/forward_list/clear.html', 0, 'std::forward_list::clear()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/clear.html', 0, 'std::fstream::clear()'], │ │ │ │ │ ['../classseqan3_1_1small__vector.html#ac1a30a67b8ff7f34b35435b6c65e8000', 1, 'seqan3::small_vector::clear()'], │ │ │ │ │ ['../classseqan3_1_1small__string.html#a1f1c4845d87bd5af18b8abf6890a432b', 1, 'seqan3::small_string::clear()'], │ │ │ │ │ ['../classseqan3_1_1dynamic__bitset.html#a2f85070c4dd7fa7422b897b6dbe9abb2', 1, 'seqan3::dynamic_bitset::clear()'], │ │ │ │ │ @@ -808,28 +808,28 @@ │ │ │ │ │ ]], │ │ │ │ │ ['copy_5fsymlink_217', ['copy_symlink', ['https://en.cppreference.com/w/cpp/experimental/fs/copy_symlink.html', 0, 'std::experimental::filesystem::copy_symlink()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/filesystem/copy_symlink.html', 0, 'std::filesystem::copy_symlink()'] │ │ │ │ │ ]], │ │ │ │ │ ['copyable_5fwrapper_2ehpp_218', ['copyable_wrapper.hpp', ['../copyable__wrapper_8hpp.html', 1, '']]], │ │ │ │ │ ['copyfmt_219', ['copyfmt', ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::basic_fstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::ifstream::copyfmt()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::wistream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::wiostream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::wifstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::wfstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::strstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::stringstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::ostrstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::ostringstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::ostream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::ofstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::istrstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::istringstream::copyfmt()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::wistringstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::istream::copyfmt()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::wistream::copyfmt()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::wistringstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::iostream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::fstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::basic_stringstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::basic_ostringstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::basic_ostream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::basic_ofstream::copyfmt()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/io/basic_ios/copyfmt.html', 0, 'std::basic_istringstream::copyfmt()'], │ │ │ │ │ @@ -855,61 +855,61 @@ │ │ │ │ │ ['core_2fdebug_5fstream_2fall_2ehpp_230', ['all.hpp', ['../core_2debug__stream_2all_8hpp.html', 1, '']]], │ │ │ │ │ ['core_2fdetail_2fall_2ehpp_231', ['all.hpp', ['../core_2detail_2all_8hpp.html', 1, '']]], │ │ │ │ │ ['core_2frange_2fall_2ehpp_232', ['all.hpp', ['../core_2range_2all_8hpp.html', 1, '']]], │ │ │ │ │ ['core_2frange_2fdetail_2fmisc_2ehpp_233', ['misc.hpp', ['../core_2range_2detail_2misc_8hpp.html', 1, '']]], │ │ │ │ │ ['core_2frange_2ftype_5ftraits_2ehpp_234', ['type_traits.hpp', ['../core_2range_2type__traits_8hpp.html', 1, '']]], │ │ │ │ │ ['cos_235', ['cos', ['https://en.cppreference.com/w/cpp/numeric/math/cos.html', 0, 'std']]], │ │ │ │ │ ['cosh_236', ['cosh', ['https://en.cppreference.com/w/cpp/numeric/math/cosh.html', 0, 'std']]], │ │ │ │ │ - ['count_237', ['count', ['https://en.cppreference.com/w/cpp/utility/bitset/count.html', 0, 'std::bitset::count()'], │ │ │ │ │ - ['../group__utility__type__pack.html#ga340a7b02a1effd95a4035c4bd68e0baa', 1, 'seqan3::pack_traits::count'], │ │ │ │ │ + ['count_237', ['count', ['../group__utility__type__pack.html#ga340a7b02a1effd95a4035c4bd68e0baa', 1, 'seqan3::pack_traits::count'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/algorithm/count.html', 0, 'std::count()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/chrono/duration/count.html', 0, 'std::chrono::hours::count()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/chrono/duration/count.html', 0, 'std::chrono::duration::count()'], │ │ │ │ │ ['../classseqan3_1_1dynamic__bitset.html#a2ffac48d8e4577ce04a2fb114966639e', 1, 'seqan3::dynamic_bitset::count()'], │ │ │ │ │ ['../classseqan3_1_1bloom__filter.html#ae7535559c4fd41eec783b8e5675a4fb9', 1, 'seqan3::bloom_filter::count()'], │ │ │ │ │ ['../classseqan3_1_1fm__index__cursor.html#a776428861cb02b38fa776db7988fec81', 1, 'seqan3::fm_index_cursor::count()'], │ │ │ │ │ ['../classseqan3_1_1bi__fm__index__cursor.html#a24d0f24e14d311293828587a51272471', 1, 'seqan3::bi_fm_index_cursor::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_set/count.html', 0, 'std::unordered_set::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multiset/count.html', 0, 'std::unordered_multiset::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multimap/count.html', 0, 'std::unordered_multimap::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_map/count.html', 0, 'std::unordered_map::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/set/count.html', 0, 'std::set::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_set/count.html', 0, 'std::pmr::unordered_set::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multiset/count.html', 0, 'std::pmr::unordered_multiset::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_multimap/count.html', 0, 'std::pmr::unordered_multimap::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/unordered_map/count.html', 0, 'std::pmr::unordered_map::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/set/count.html', 0, 'std::pmr::set::count()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/multimap/count.html', 0, 'std::pmr::multimap::count()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/multiset/count.html', 0, 'std::pmr::multiset::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/map/count.html', 0, 'std::pmr::map::count()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/multiset/count.html', 0, 'std::multiset::count()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/multimap/count.html', 0, 'std::multimap::count()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/map/count.html', 0, 'std::map::count()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/utility/bitset/count.html', 0, 'std::bitset::count()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/chrono/duration/count.html', 0, 'std::chrono::hours::count()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/chrono/duration/count.html', 0, 'std::chrono::microseconds::count()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/chrono/duration/count.html', 0, 'std::chrono::milliseconds::count()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/chrono/duration/count.html', 0, 'std::chrono::minutes::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/chrono/duration/count.html', 0, 'std::chrono::seconds::count()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/map/count.html', 0, 'std::map::count()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/multimap/count.html', 0, 'std::multimap::count()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/chrono/duration/count.html', 0, 'std::chrono::nanoseconds::count()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/chrono/duration/count.html', 0, 'std::chrono::minutes::count()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/chrono/duration/count.html', 0, 'std::chrono::milliseconds::count()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/chrono/duration/count.html', 0, 'std::chrono::microseconds::count()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/chrono/duration/count.html', 0, 'std::chrono::duration::count()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/container/multiset/count.html', 0, 'std::pmr::multiset::count()'] │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/multiset/count.html', 0, 'std::multiset::count()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/container/multimap/count.html', 0, 'std::pmr::multimap::count()'] │ │ │ │ │ ]], │ │ │ │ │ ['count_3c_20query_5ft_2c_20type_5flist_3c_20pack_5ft_2e_2e_2e_20_3e_20_3e_238', ['count< query_t, type_list< pack_t... > >', ['../group__utility__type__list.html#gae8699384ceffb5f9802db6e375be4fb0', 1, 'seqan3::list_traits']]], │ │ │ │ │ ['count_5fif_239', ['count_if', ['https://en.cppreference.com/w/cpp/algorithm/count.html', 0, 'std']]], │ │ │ │ │ ['counting_5fagent_240', ['counting_agent', ['../classseqan3_1_1interleaved__bloom__filter.html#a823f2f2b0905392339126d7761e703d2', 1, 'seqan3::interleaved_bloom_filter']]], │ │ │ │ │ - ['counting_5fagent_5ftype_241', ['counting_agent_type', ['../classseqan3_1_1interleaved__bloom__filter_1_1counting__agent__type.html#a3e1911ac284d3a158d062e4fe5025e76', 1, 'seqan3::interleaved_bloom_filter::counting_agent_type::counting_agent_type()=default'], │ │ │ │ │ - ['../classseqan3_1_1interleaved__bloom__filter_1_1counting__agent__type.html#a438da8e34231565aeb9ea78323a9a483', 1, 'seqan3::interleaved_bloom_filter::counting_agent_type::counting_agent_type(counting_agent_type const &)=default'], │ │ │ │ │ + ['counting_5fagent_5ftype_241', ['counting_agent_type', ['../classseqan3_1_1interleaved__bloom__filter_1_1counting__agent__type.html', 1, 'seqan3::interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >'], │ │ │ │ │ ['../classseqan3_1_1interleaved__bloom__filter_1_1counting__agent__type.html#a40f2267e5dc1e3cb2fa3b34bd755992a', 1, 'seqan3::interleaved_bloom_filter::counting_agent_type::counting_agent_type(counting_agent_type &&)=default'], │ │ │ │ │ - ['../classseqan3_1_1interleaved__bloom__filter_1_1counting__agent__type.html', 1, 'seqan3::interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >'] │ │ │ │ │ + ['../classseqan3_1_1interleaved__bloom__filter_1_1counting__agent__type.html#a438da8e34231565aeb9ea78323a9a483', 1, 'seqan3::interleaved_bloom_filter::counting_agent_type::counting_agent_type(counting_agent_type const &)=default'], │ │ │ │ │ + ['../classseqan3_1_1interleaved__bloom__filter_1_1counting__agent__type.html#a3e1911ac284d3a158d062e4fe5025e76', 1, 'seqan3::interleaved_bloom_filter::counting_agent_type::counting_agent_type()=default'] │ │ │ │ │ ]], │ │ │ │ │ ['counting_5fvector_242', ['counting_vector', ['../classseqan3_1_1counting__vector.html', 1, 'seqan3::counting_vector< value_t >'], │ │ │ │ │ ['../classseqan3_1_1counting__vector.html#ae769bb7bac5da4ba445a289f6458f01e', 1, 'seqan3::counting_vector::counting_vector()=default'], │ │ │ │ │ ['../classseqan3_1_1counting__vector.html#aa17c3c047a0297008357aa879af2c384', 1, 'seqan3::counting_vector::counting_vector(counting_vector const &)=default'], │ │ │ │ │ ['../classseqan3_1_1counting__vector.html#aaced01f85bb9f121a0deaaa304b86d3e', 1, 'seqan3::counting_vector::counting_vector(counting_vector &&)=default'] │ │ │ │ │ ]], │ │ │ │ │ ['cout_243', ['cout', ['https://en.cppreference.com/w/cpp/io/cout.html', 0, 'std']]], │ │ │ │ │ - ['crbegin_244', ['crbegin', ['https://en.cppreference.com/w/cpp/iterator/rbegin.html', 0, 'std::crbegin()'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/rbegin.html', 0, 'std::experimental::u16string_view::crbegin()'], │ │ │ │ │ + ['crbegin_244', ['crbegin', ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/rbegin.html', 0, 'std::experimental::u16string_view::crbegin()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/iterator/rbegin.html', 0, 'std::crbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/map/rbegin.html', 0, 'std::map::crbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string/rbegin.html', 0, 'std::basic_string::crbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/string/basic_string_view/rbegin.html', 0, 'std::basic_string_view::crbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/container/deque/rbegin.html', 0, 'std::deque::crbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/rbegin.html', 0, 'std::experimental::basic_string_view::crbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/rbegin.html', 0, 'std::experimental::string_view::crbegin()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/experimental/basic_string_view/rbegin.html', 0, 'std::experimental::u32string_view::crbegin()'], │ │ │ │ │ @@ -1014,16 +1014,16 @@ │ │ │ │ │ ['cstdio_267', ['cstdio', ['https://en.cppreference.com/w/cpp/header/cstdio.html', 0, '']]], │ │ │ │ │ ['cstdlib_268', ['cstdlib', ['https://en.cppreference.com/w/cpp/header/cstdlib.html', 0, '']]], │ │ │ │ │ ['cstring_269', ['cstring', ['https://en.cppreference.com/w/cpp/header/cstring.html', 0, '']]], │ │ │ │ │ ['csub_5fmatch_270', ['csub_match', ['https://en.cppreference.com/w/cpp/regex/sub_match.html', 0, 'std::csub_match'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/regex/sub_match/sub_match.html', 0, 'std::csub_match::csub_match()'] │ │ │ │ │ ]], │ │ │ │ │ ['ctgmath_271', ['ctgmath', ['https://en.cppreference.com/w/cpp/header/ctgmath.html', 0, '']]], │ │ │ │ │ - ['ctime_272', ['ctime', ['https://en.cppreference.com/w/cpp/header/ctime.html', 0, '(Global Namespace)'], │ │ │ │ │ - ['https://en.cppreference.com/w/cpp/chrono/c/ctime.html', 0, 'std::ctime()'] │ │ │ │ │ + ['ctime_272', ['ctime', ['https://en.cppreference.com/w/cpp/chrono/c/ctime.html', 0, 'std::ctime()'], │ │ │ │ │ + ['https://en.cppreference.com/w/cpp/header/ctime.html', 0, '(Global Namespace)'] │ │ │ │ │ ]], │ │ │ │ │ ['ctype_273', ['ctype', ['https://en.cppreference.com/w/cpp/locale/ctype/ctype.html', 0, 'std::ctype::ctype()'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/ctype.html', 0, 'std::ctype'] │ │ │ │ │ ]], │ │ │ │ │ ['ctype_5fbase_274', ['ctype_base', ['https://en.cppreference.com/w/cpp/locale/ctype_base.html', 0, 'std']]], │ │ │ │ │ ['ctype_5fbyname_275', ['ctype_byname', ['https://en.cppreference.com/w/cpp/locale/ctype_byname.html', 0, 'std::ctype_byname'], │ │ │ │ │ ['https://en.cppreference.com/w/cpp/locale/ctype_byname.html', 0, 'std::ctype_byname::ctype_byname()']