--- /srv/reproducible-results/rbuild-debian/r-b-build.1kISf30E/b1/nitime_0.11-2_amd64.changes
+++ /srv/reproducible-results/rbuild-debian/r-b-build.1kISf30E/b2/nitime_0.11-2_amd64.changes
├── Files
│ @@ -1,3 +1,3 @@
│  
│ - 9e9315c6cf193d3694585ae22c6d1ad3 2442904 doc optional python-nitime-doc_0.11-2_all.deb
│ + ae279400e9b4671d0af09454ca1ffe87 2442904 doc optional python-nitime-doc_0.11-2_all.deb
│   f92b3f5080e1798eb33db19ce52a4ea8 2549592 python optional python3-nitime_0.11-2_all.deb
├── python-nitime-doc_0.11-2_all.deb
│ ├── file list
│ │ @@ -1,3 +1,3 @@
│ │  -rw-r--r--   0        0        0        4 2024-09-23 08:17:16.000000 debian-binary
│ │ --rw-r--r--   0        0        0     5140 2024-09-23 08:17:16.000000 control.tar.xz
│ │ --rw-r--r--   0        0        0  2437572 2024-09-23 08:17:16.000000 data.tar.xz
│ │ +-rw-r--r--   0        0        0     5144 2024-09-23 08:17:16.000000 control.tar.xz
│ │ +-rw-r--r--   0        0        0  2437568 2024-09-23 08:17:16.000000 data.tar.xz
│ ├── control.tar.xz
│ │ ├── control.tar
│ │ │ ├── ./control
│ │ │ │ @@ -1,13 +1,13 @@
│ │ │ │  Package: python-nitime-doc
│ │ │ │  Source: nitime
│ │ │ │  Version: 0.11-2
│ │ │ │  Architecture: all
│ │ │ │  Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
│ │ │ │ -Installed-Size: 4445
│ │ │ │ +Installed-Size: 4446
│ │ │ │  Depends: libjs-jquery, libjs-underscore
│ │ │ │  Suggests: python3-nitime
│ │ │ │  Section: doc
│ │ │ │  Priority: optional
│ │ │ │  Multi-Arch: foreign
│ │ │ │  Homepage: https://nipy.org/nitime
│ │ │ │  Description: timeseries analysis for neuroscience data (nitime) -- documentation
│ │ │ ├── ./md5sums
│ │ │ │ ├── ./md5sums
│ │ │ │ │┄ Files differ
│ ├── data.tar.xz
│ │ ├── data.tar
│ │ │ ├── file list
│ │ │ │ @@ -129,37 +129,37 @@
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     9363 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/devel/how_to_release.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     8321 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/devel/index.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    19450 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/devel/patching.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    14065 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/devel/set_up_fork.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     4555 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/devel/usecases.html
│ │ │ │  drwxr-xr-x   0 root         (0) root         (0)        0 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/discussion/
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    17719 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/discussion/base_classes.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)     6816 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/discussion/index.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)     6780 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/discussion/index.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    19592 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/discussion/interval_object.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    12937 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/discussion/multitaper_jackknife.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     6612 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/discussion/note_about_discussion.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    20469 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/discussion/time_series_access.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    13629 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/documentation.html
│ │ │ │  drwxr-xr-x   0 root         (0) root         (0)        0 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    16186 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_1var.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    35100 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_2vars.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    36012 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_3vars.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    20422 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_model_fit.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    17606 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/event_related_fmri.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    48335 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/filtering_fmri.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    26154 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/granger_fmri.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    26156 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/grasshopper.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)     9101 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/index.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    28460 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/mtm_baseband_power.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    28950 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/mtm_harmonic_test.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    37484 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_coh.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    44097 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_spectral_estimation.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    35664 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/resting_state_fmri.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    28598 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/seed_analysis.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    21498 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/snr_example.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    16042 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_1var.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    35148 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_2vars.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    36152 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_3vars.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    20442 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_model_fit.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    17602 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/event_related_fmri.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    48195 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/filtering_fmri.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    26142 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/granger_fmri.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    26172 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/grasshopper.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)     9045 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/index.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    28524 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/mtm_baseband_power.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    28914 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/mtm_harmonic_test.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    37448 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_coh.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    44153 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_spectral_estimation.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    35756 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/resting_state_fmri.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    28618 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/seed_analysis.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    21506 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/examples/snr_example.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    68975 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/genindex.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     6022 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/index.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     4721 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/news.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     5327 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/objects.inv
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    10827 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/py-modindex.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     4493 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/search.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)   163533 2024-09-23 08:17:16.000000 ./usr/share/doc/python-nitime-doc/html/searchindex.js
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/discussion/index.html
│ │ │ │ @@ -12,15 +12,15 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │      <link rel="next" title="A note about the discussion section" href="note_about_discussion.html" />
│ │ │ │ -    <link rel="prev" title="Multitaper spectral estimation" href="../examples/multi_taper_spectral_estimation.html" />
│ │ │ │ +    <link rel="prev" title="Fitting an MAR model: analyzer interface" href="../examples/ar_model_fit.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -35,15 +35,15 @@
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="note_about_discussion.html" title="A note about the discussion section"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="../examples/multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │ +          <a href="../examples/ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" accesskey="U">Nitime Documentation</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │      </div>  
│ │ │ │ @@ -98,16 +98,16 @@
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="../examples/multi_taper_spectral_estimation.html"
│ │ │ │ -                          title="previous chapter">Multitaper spectral estimation</a></p>
│ │ │ │ +    <p class="topless"><a href="../examples/ar_model_fit.html"
│ │ │ │ +                          title="previous chapter">Fitting an MAR model: analyzer interface</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │      <p class="topless"><a href="note_about_discussion.html"
│ │ │ │                            title="next chapter">A note about the discussion section</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │ @@ -133,15 +133,15 @@
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="note_about_discussion.html" title="A note about the discussion section"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="../examples/multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │ +          <a href="../examples/ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │      </div>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -22,15 +22,15 @@
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_M_u_l_t_i_t_a_p_e_r_ _s_p_e_c_t_r_a_l_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │ +_F_i_t_t_i_n_g_ _a_n_ _M_A_R_ _m_o_d_e_l_:_ _a_n_a_l_y_z_e_r_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │  _A_ _n_o_t_e_ _a_b_o_u_t_ _t_h_e_ _d_i_s_c_u_s_s_i_o_n_ _s_e_c_t_i_o_n
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/documentation.html
│ │ │ │┄ Ordering differences only
│ │ │ │ @@ -71,29 +71,29 @@
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="whatsnew/version0.6.html">Release notes for nitime version 0.6</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="whatsnew/version0.5.html">Release notes for nitime version 0.5</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="whatsnew/version0.4.html">Release notes for nitime version 0.4</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="whatsnew/version0.3.html">Release notes for nitime version 0.3</a></li>
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="examples/index.html">Examples</a><ul>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/ar_est_3vars.html">Multivariate auto-regressive modeling - 3 variables</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/ar_est_1var.html">Fitting an AR model: algorithm module interface</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/mtm_harmonic_test.html">Multitaper F-test for harmonic components</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="examples/filtering_fmri.html">Filtering and normalizing fMRI data</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/granger_fmri.html">Granger ‘causality’ of fMRI data</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/ar_est_2vars.html">Multivariate auto-regressive modeling</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/multi_taper_coh.html">Multitaper coherence estimation</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/ar_est_1var.html">Fitting an AR model: algorithm module interface</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/event_related_fmri.html">Event-related fMRI</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="examples/seed_analysis.html">Seed correlation/coherence with fMRI data</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/multi_taper_spectral_estimation.html">Multitaper spectral estimation</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="examples/grasshopper.html">Auditory processing in grasshoppers</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/multi_taper_coh.html">Multitaper coherence estimation</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/granger_fmri.html">Granger ‘causality’ of fMRI data</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/ar_est_2vars.html">Multivariate auto-regressive modeling</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/mtm_harmonic_test.html">Multitaper F-test for harmonic components</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="examples/resting_state_fmri.html">Coherency analysis of fMRI data</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/ar_model_fit.html">Fitting an MAR model: analyzer interface</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/event_related_fmri.html">Event-related fMRI</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/mtm_baseband_power.html">Multitaper method for baseband demodulation</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/ar_est_3vars.html">Multivariate auto-regressive modeling - 3 variables</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="examples/snr_example.html">Calculation of signal-to-noise and information</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/multi_taper_spectral_estimation.html">Multitaper spectral estimation</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/mtm_baseband_power.html">Multitaper method for baseband demodulation</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/ar_model_fit.html">Fitting an MAR model: analyzer interface</a></li>
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="discussion/index.html">Discussion</a><ul>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="discussion/note_about_discussion.html">A note about the discussion section</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="discussion/multitaper_jackknife.html">Jack-knifing a Multitaper SDF estimator</a></li>
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -18,29 +18,29 @@
│ │ │ │ │      * _W_h_a_t_’_s_ _n_e_w_ _i_n_ _N_i_t_i_m_e
│ │ │ │ │            o _R_e_l_e_a_s_e_ _n_o_t_e_s_ _f_o_r_ _n_i_t_i_m_e_ _v_e_r_s_i_o_n_ _0_._7
│ │ │ │ │            o _R_e_l_e_a_s_e_ _n_o_t_e_s_ _f_o_r_ _n_i_t_i_m_e_ _v_e_r_s_i_o_n_ _0_._6
│ │ │ │ │            o _R_e_l_e_a_s_e_ _n_o_t_e_s_ _f_o_r_ _n_i_t_i_m_e_ _v_e_r_s_i_o_n_ _0_._5
│ │ │ │ │            o _R_e_l_e_a_s_e_ _n_o_t_e_s_ _f_o_r_ _n_i_t_i_m_e_ _v_e_r_s_i_o_n_ _0_._4
│ │ │ │ │            o _R_e_l_e_a_s_e_ _n_o_t_e_s_ _f_o_r_ _n_i_t_i_m_e_ _v_e_r_s_i_o_n_ _0_._3
│ │ │ │ │      * _E_x_a_m_p_l_e_s
│ │ │ │ │ -          o _M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g_ _-_ _3_ _v_a_r_i_a_b_l_e_s
│ │ │ │ │ -          o _F_i_t_t_i_n_g_ _a_n_ _A_R_ _m_o_d_e_l_:_ _a_l_g_o_r_i_t_h_m_ _m_o_d_u_l_e_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │ -          o _M_u_l_t_i_t_a_p_e_r_ _F_-_t_e_s_t_ _f_o_r_ _h_a_r_m_o_n_i_c_ _c_o_m_p_o_n_e_n_t_s
│ │ │ │ │            o _F_i_l_t_e_r_i_n_g_ _a_n_d_ _n_o_r_m_a_l_i_z_i_n_g_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ -          o _G_r_a_n_g_e_r_ _‘_c_a_u_s_a_l_i_t_y_’_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ -          o _M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g
│ │ │ │ │ -          o _M_u_l_t_i_t_a_p_e_r_ _c_o_h_e_r_e_n_c_e_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │ +          o _F_i_t_t_i_n_g_ _a_n_ _A_R_ _m_o_d_e_l_:_ _a_l_g_o_r_i_t_h_m_ _m_o_d_u_l_e_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │ +          o _E_v_e_n_t_-_r_e_l_a_t_e_d_ _f_M_R_I
│ │ │ │ │            o _S_e_e_d_ _c_o_r_r_e_l_a_t_i_o_n_/_c_o_h_e_r_e_n_c_e_ _w_i_t_h_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ +          o _M_u_l_t_i_t_a_p_e_r_ _s_p_e_c_t_r_a_l_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │            o _A_u_d_i_t_o_r_y_ _p_r_o_c_e_s_s_i_n_g_ _i_n_ _g_r_a_s_s_h_o_p_p_e_r_s
│ │ │ │ │ +          o _M_u_l_t_i_t_a_p_e_r_ _c_o_h_e_r_e_n_c_e_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │ +          o _G_r_a_n_g_e_r_ _‘_c_a_u_s_a_l_i_t_y_’_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ +          o _M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g
│ │ │ │ │ +          o _M_u_l_t_i_t_a_p_e_r_ _F_-_t_e_s_t_ _f_o_r_ _h_a_r_m_o_n_i_c_ _c_o_m_p_o_n_e_n_t_s
│ │ │ │ │            o _C_o_h_e_r_e_n_c_y_ _a_n_a_l_y_s_i_s_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ -          o _F_i_t_t_i_n_g_ _a_n_ _M_A_R_ _m_o_d_e_l_:_ _a_n_a_l_y_z_e_r_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │ -          o _E_v_e_n_t_-_r_e_l_a_t_e_d_ _f_M_R_I
│ │ │ │ │ -          o _M_u_l_t_i_t_a_p_e_r_ _m_e_t_h_o_d_ _f_o_r_ _b_a_s_e_b_a_n_d_ _d_e_m_o_d_u_l_a_t_i_o_n
│ │ │ │ │ +          o _M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g_ _-_ _3_ _v_a_r_i_a_b_l_e_s
│ │ │ │ │            o _C_a_l_c_u_l_a_t_i_o_n_ _o_f_ _s_i_g_n_a_l_-_t_o_-_n_o_i_s_e_ _a_n_d_ _i_n_f_o_r_m_a_t_i_o_n
│ │ │ │ │ -          o _M_u_l_t_i_t_a_p_e_r_ _s_p_e_c_t_r_a_l_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │ +          o _M_u_l_t_i_t_a_p_e_r_ _m_e_t_h_o_d_ _f_o_r_ _b_a_s_e_b_a_n_d_ _d_e_m_o_d_u_l_a_t_i_o_n
│ │ │ │ │ +          o _F_i_t_t_i_n_g_ _a_n_ _M_A_R_ _m_o_d_e_l_:_ _a_n_a_l_y_z_e_r_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │      * _D_i_s_c_u_s_s_i_o_n
│ │ │ │ │            o _A_ _n_o_t_e_ _a_b_o_u_t_ _t_h_e_ _d_i_s_c_u_s_s_i_o_n_ _s_e_c_t_i_o_n
│ │ │ │ │            o _J_a_c_k_-_k_n_i_f_i_n_g_ _a_ _M_u_l_t_i_t_a_p_e_r_ _S_D_F_ _e_s_t_i_m_a_t_o_r
│ │ │ │ │      * _W_o_r_k_i_n_g_ _w_i_t_h_ _nn_ii_tt_ii_mm_ee_ _s_o_u_r_c_e_ _c_o_d_e
│ │ │ │ │            o _I_n_t_r_o_d_u_c_t_i_o_n
│ │ │ │ │            o _I_n_s_t_a_l_l_ _g_i_t
│ │ │ │ │            o _F_o_l_l_o_w_i_n_g_ _t_h_e_ _l_a_t_e_s_t_ _s_o_u_r_c_e
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/ar_est_1var.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Multitaper F-test for harmonic components" href="mtm_harmonic_test.html" />
│ │ │ │ -    <link rel="prev" title="Multivariate auto-regressive modeling - 3 variables" href="ar_est_3vars.html" />
│ │ │ │ +    <link rel="next" title="Event-related fMRI" href="event_related_fmri.html" />
│ │ │ │ +    <link rel="prev" title="Filtering and normalizing fMRI data" href="filtering_fmri.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │ +          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │ +          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -155,21 +155,21 @@
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="ar_est_3vars.html"
│ │ │ │ -                          title="previous chapter">Multivariate auto-regressive modeling - 3 variables</a></p>
│ │ │ │ +    <p class="topless"><a href="filtering_fmri.html"
│ │ │ │ +                          title="previous chapter">Filtering and normalizing fMRI data</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="mtm_harmonic_test.html"
│ │ │ │ -                          title="next chapter">Multitaper F-test for harmonic components</a></p>
│ │ │ │ +    <p class="topless"><a href="event_related_fmri.html"
│ │ │ │ +                          title="next chapter">Event-related fMRI</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -187,18 +187,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │ +          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │ +          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -69,17 +69,17 @@
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g_ _-_ _3_ _v_a_r_i_a_b_l_e_s
│ │ │ │ │ +_F_i_l_t_e_r_i_n_g_ _a_n_d_ _n_o_r_m_a_l_i_z_i_n_g_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_M_u_l_t_i_t_a_p_e_r_ _F_-_t_e_s_t_ _f_o_r_ _h_a_r_m_o_n_i_c_ _c_o_m_p_o_n_e_n_t_s
│ │ │ │ │ +_E_v_e_n_t_-_r_e_l_a_t_e_d_ _f_M_R_I
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/ar_est_2vars.html
│ │ │ │ @@ -11,15 +11,15 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Multitaper coherence estimation" href="multi_taper_coh.html" />
│ │ │ │ +    <link rel="next" title="Multitaper F-test for harmonic components" href="mtm_harmonic_test.html" />
│ │ │ │      <link rel="prev" title="Granger ‘causality’ of fMRI data" href="granger_fmri.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │ @@ -32,15 +32,15 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │ +          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="granger_fmri.html" title="Granger ‘causality’ of fMRI data"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │ @@ -330,16 +330,16 @@
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │      <p class="topless"><a href="granger_fmri.html"
│ │ │ │                            title="previous chapter">Granger ‘causality’ of fMRI data</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="multi_taper_coh.html"
│ │ │ │ -                          title="next chapter">Multitaper coherence estimation</a></p>
│ │ │ │ +    <p class="topless"><a href="mtm_harmonic_test.html"
│ │ │ │ +                          title="next chapter">Multitaper F-test for harmonic components</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -357,15 +357,15 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │ +          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="granger_fmri.html" title="Granger ‘causality’ of fMRI data"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -201,15 +201,15 @@
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │  _G_r_a_n_g_e_r_ _‘_c_a_u_s_a_l_i_t_y_’_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_M_u_l_t_i_t_a_p_e_r_ _c_o_h_e_r_e_n_c_e_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │ +_M_u_l_t_i_t_a_p_e_r_ _F_-_t_e_s_t_ _f_o_r_ _h_a_r_m_o_n_i_c_ _c_o_m_p_o_n_e_n_t_s
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/ar_est_3vars.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Fitting an AR model: algorithm module interface" href="ar_est_1var.html" />
│ │ │ │ -    <link rel="prev" title="Examples" href="index.html" />
│ │ │ │ +    <link rel="next" title="Calculation of signal-to-noise and information" href="snr_example.html" />
│ │ │ │ +    <link rel="prev" title="Coherency analysis of fMRI data" href="resting_state_fmri.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │ +          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="index.html" title="Examples"
│ │ │ │ +          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -263,21 +263,21 @@
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="index.html"
│ │ │ │ -                          title="previous chapter">Examples</a></p>
│ │ │ │ +    <p class="topless"><a href="resting_state_fmri.html"
│ │ │ │ +                          title="previous chapter">Coherency analysis of fMRI data</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="ar_est_1var.html"
│ │ │ │ -                          title="next chapter">Fitting an AR model: algorithm module interface</a></p>
│ │ │ │ +    <p class="topless"><a href="snr_example.html"
│ │ │ │ +                          title="next chapter">Calculation of signal-to-noise and information</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -295,18 +295,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │ +          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="index.html" title="Examples"
│ │ │ │ +          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -155,17 +155,17 @@
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_E_x_a_m_p_l_e_s
│ │ │ │ │ +_C_o_h_e_r_e_n_c_y_ _a_n_a_l_y_s_i_s_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_F_i_t_t_i_n_g_ _a_n_ _A_R_ _m_o_d_e_l_:_ _a_l_g_o_r_i_t_h_m_ _m_o_d_u_l_e_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │ +_C_a_l_c_u_l_a_t_i_o_n_ _o_f_ _s_i_g_n_a_l_-_t_o_-_n_o_i_s_e_ _a_n_d_ _i_n_f_o_r_m_a_t_i_o_n
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/ar_model_fit.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Event-related fMRI" href="event_related_fmri.html" />
│ │ │ │ -    <link rel="prev" title="Coherency analysis of fMRI data" href="resting_state_fmri.html" />
│ │ │ │ +    <link rel="next" title="Discussion" href="../discussion/index.html" />
│ │ │ │ +    <link rel="prev" title="Multitaper method for baseband demodulation" href="mtm_baseband_power.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │ +          <a href="../discussion/index.html" title="Discussion"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │ +          <a href="mtm_baseband_power.html" title="Multitaper method for baseband demodulation"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -196,21 +196,21 @@
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="resting_state_fmri.html"
│ │ │ │ -                          title="previous chapter">Coherency analysis of fMRI data</a></p>
│ │ │ │ +    <p class="topless"><a href="mtm_baseband_power.html"
│ │ │ │ +                          title="previous chapter">Multitaper method for baseband demodulation</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="event_related_fmri.html"
│ │ │ │ -                          title="next chapter">Event-related fMRI</a></p>
│ │ │ │ +    <p class="topless"><a href="../discussion/index.html"
│ │ │ │ +                          title="next chapter">Discussion</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -228,18 +228,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │ +          <a href="../discussion/index.html" title="Discussion"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │ +          <a href="mtm_baseband_power.html" title="Multitaper method for baseband demodulation"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -96,17 +96,17 @@
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_C_o_h_e_r_e_n_c_y_ _a_n_a_l_y_s_i_s_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ +_M_u_l_t_i_t_a_p_e_r_ _m_e_t_h_o_d_ _f_o_r_ _b_a_s_e_b_a_n_d_ _d_e_m_o_d_u_l_a_t_i_o_n
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_E_v_e_n_t_-_r_e_l_a_t_e_d_ _f_M_R_I
│ │ │ │ │ +_D_i_s_c_u_s_s_i_o_n
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/event_related_fmri.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Multitaper method for baseband demodulation" href="mtm_baseband_power.html" />
│ │ │ │ -    <link rel="prev" title="Fitting an MAR model: analyzer interface" href="ar_model_fit.html" />
│ │ │ │ +    <link rel="next" title="Seed correlation/coherence with fMRI data" href="seed_analysis.html" />
│ │ │ │ +    <link rel="prev" title="Fitting an AR model: algorithm module interface" href="ar_est_1var.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="mtm_baseband_power.html" title="Multitaper method for baseband demodulation"
│ │ │ │ +          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │ +          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -191,21 +191,21 @@
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="ar_model_fit.html"
│ │ │ │ -                          title="previous chapter">Fitting an MAR model: analyzer interface</a></p>
│ │ │ │ +    <p class="topless"><a href="ar_est_1var.html"
│ │ │ │ +                          title="previous chapter">Fitting an AR model: algorithm module interface</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="mtm_baseband_power.html"
│ │ │ │ -                          title="next chapter">Multitaper method for baseband demodulation</a></p>
│ │ │ │ +    <p class="topless"><a href="seed_analysis.html"
│ │ │ │ +                          title="next chapter">Seed correlation/coherence with fMRI data</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -223,18 +223,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="mtm_baseband_power.html" title="Multitaper method for baseband demodulation"
│ │ │ │ +          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │ +          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -92,17 +92,17 @@
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_F_i_t_t_i_n_g_ _a_n_ _M_A_R_ _m_o_d_e_l_:_ _a_n_a_l_y_z_e_r_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │ +_F_i_t_t_i_n_g_ _a_n_ _A_R_ _m_o_d_e_l_:_ _a_l_g_o_r_i_t_h_m_ _m_o_d_u_l_e_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_M_u_l_t_i_t_a_p_e_r_ _m_e_t_h_o_d_ _f_o_r_ _b_a_s_e_b_a_n_d_ _d_e_m_o_d_u_l_a_t_i_o_n
│ │ │ │ │ +_S_e_e_d_ _c_o_r_r_e_l_a_t_i_o_n_/_c_o_h_e_r_e_n_c_e_ _w_i_t_h_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/filtering_fmri.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Granger ‘causality’ of fMRI data" href="granger_fmri.html" />
│ │ │ │ -    <link rel="prev" title="Multitaper F-test for harmonic components" href="mtm_harmonic_test.html" />
│ │ │ │ +    <link rel="next" title="Fitting an AR model: algorithm module interface" href="ar_est_1var.html" />
│ │ │ │ +    <link rel="prev" title="Examples" href="index.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="granger_fmri.html" title="Granger ‘causality’ of fMRI data"
│ │ │ │ +          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │ +          <a href="index.html" title="Examples"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -433,21 +433,21 @@
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="mtm_harmonic_test.html"
│ │ │ │ -                          title="previous chapter">Multitaper F-test for harmonic components</a></p>
│ │ │ │ +    <p class="topless"><a href="index.html"
│ │ │ │ +                          title="previous chapter">Examples</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="granger_fmri.html"
│ │ │ │ -                          title="next chapter">Granger ‘causality’ of fMRI data</a></p>
│ │ │ │ +    <p class="topless"><a href="ar_est_1var.html"
│ │ │ │ +                          title="next chapter">Fitting an AR model: algorithm module interface</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -465,18 +465,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="granger_fmri.html" title="Granger ‘causality’ of fMRI data"
│ │ │ │ +          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │ +          <a href="index.html" title="Examples"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -315,17 +315,17 @@
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_M_u_l_t_i_t_a_p_e_r_ _F_-_t_e_s_t_ _f_o_r_ _h_a_r_m_o_n_i_c_ _c_o_m_p_o_n_e_n_t_s
│ │ │ │ │ +_E_x_a_m_p_l_e_s
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_G_r_a_n_g_e_r_ _‘_c_a_u_s_a_l_i_t_y_’_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ +_F_i_t_t_i_n_g_ _a_n_ _A_R_ _m_o_d_e_l_:_ _a_l_g_o_r_i_t_h_m_ _m_o_d_u_l_e_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/granger_fmri.html
│ │ │ │ @@ -12,15 +12,15 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │      <link rel="next" title="Multivariate auto-regressive modeling" href="ar_est_2vars.html" />
│ │ │ │ -    <link rel="prev" title="Filtering and normalizing fMRI data" href="filtering_fmri.html" />
│ │ │ │ +    <link rel="prev" title="Multitaper coherence estimation" href="multi_taper_coh.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -35,15 +35,15 @@
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │ +          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -270,16 +270,16 @@
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │  </ul>
│ │ │ │  
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="filtering_fmri.html"
│ │ │ │ -                          title="previous chapter">Filtering and normalizing fMRI data</a></p>
│ │ │ │ +    <p class="topless"><a href="multi_taper_coh.html"
│ │ │ │ +                          title="previous chapter">Multitaper coherence estimation</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │      <p class="topless"><a href="ar_est_2vars.html"
│ │ │ │                            title="next chapter">Multivariate auto-regressive modeling</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │ @@ -305,15 +305,15 @@
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │ +          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -147,15 +147,15 @@
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ******** _TT_aa_bb_ll_ee_ _oo_ff_ _CC_oo_nn_tt_ee_nn_tt_ss ********
│ │ │ │ │      * _G_r_a_n_g_e_r_ _‘_c_a_u_s_a_l_i_t_y_’_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │            o _R_e_f_e_r_e_n_c_e_s
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_F_i_l_t_e_r_i_n_g_ _a_n_d_ _n_o_r_m_a_l_i_z_i_n_g_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ +_M_u_l_t_i_t_a_p_e_r_ _c_o_h_e_r_e_n_c_e_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │  _M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/grasshopper.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Coherency analysis of fMRI data" href="resting_state_fmri.html" />
│ │ │ │ -    <link rel="prev" title="Seed correlation/coherence with fMRI data" href="seed_analysis.html" />
│ │ │ │ +    <link rel="next" title="Multitaper coherence estimation" href="multi_taper_coh.html" />
│ │ │ │ +    <link rel="prev" title="Multitaper spectral estimation" href="multi_taper_spectral_estimation.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │ +          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │ +          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -233,21 +233,21 @@
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="seed_analysis.html"
│ │ │ │ -                          title="previous chapter">Seed correlation/coherence with fMRI data</a></p>
│ │ │ │ +    <p class="topless"><a href="multi_taper_spectral_estimation.html"
│ │ │ │ +                          title="previous chapter">Multitaper spectral estimation</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="resting_state_fmri.html"
│ │ │ │ -                          title="next chapter">Coherency analysis of fMRI data</a></p>
│ │ │ │ +    <p class="topless"><a href="multi_taper_coh.html"
│ │ │ │ +                          title="next chapter">Multitaper coherence estimation</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -265,18 +265,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │ +          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │ +          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -127,17 +127,17 @@
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_S_e_e_d_ _c_o_r_r_e_l_a_t_i_o_n_/_c_o_h_e_r_e_n_c_e_ _w_i_t_h_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ +_M_u_l_t_i_t_a_p_e_r_ _s_p_e_c_t_r_a_l_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_C_o_h_e_r_e_n_c_y_ _a_n_a_l_y_s_i_s_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ +_M_u_l_t_i_t_a_p_e_r_ _c_o_h_e_r_e_n_c_e_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/index.html
│ │ │ │ @@ -11,15 +11,15 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Multivariate auto-regressive modeling - 3 variables" href="ar_est_3vars.html" />
│ │ │ │ +    <link rel="next" title="Filtering and normalizing fMRI data" href="filtering_fmri.html" />
│ │ │ │      <link rel="prev" title="Release notes for nitime version 0.3" href="../whatsnew/version0.3.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │ @@ -32,15 +32,15 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │ +          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../whatsnew/version0.3.html" title="Release notes for nitime version 0.3"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" accesskey="U">Nitime Documentation</a> &#187;</li>
│ │ │ │ @@ -65,36 +65,36 @@
│ │ │ │  <p>If you want to replicate a particular analysis or visualization, simply copy
│ │ │ │  the relevant “.py” script from the source distribution, or download the script
│ │ │ │  using the link at the bottom of each page.</p>
│ │ │ │  <p>Thanks to the developers of <a class="reference external" href="http://www.pymvpa.org">PyMVPA</a> for designing the software which enables us
│ │ │ │  to provide these documented examples!</p>
│ │ │ │  <div class="toctree-wrapper compound">
│ │ │ │  <ul>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="ar_est_3vars.html">Multivariate auto-regressive modeling - 3 variables</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="ar_est_1var.html">Fitting an AR model: algorithm module interface</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="mtm_harmonic_test.html">Multitaper F-test for harmonic components</a></li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="filtering_fmri.html">Filtering and normalizing fMRI data</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="ar_est_1var.html">Fitting an AR model: algorithm module interface</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="event_related_fmri.html">Event-related fMRI</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="seed_analysis.html">Seed correlation/coherence with fMRI data</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="multi_taper_spectral_estimation.html">Multitaper spectral estimation</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="grasshopper.html">Auditory processing in grasshoppers</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="multi_taper_coh.html">Multitaper coherence estimation</a></li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="granger_fmri.html">Granger ‘causality’ of fMRI data</a><ul>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="granger_fmri.html#references">References</a></li>
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="ar_est_2vars.html">Multivariate auto-regressive modeling</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="multi_taper_coh.html">Multitaper coherence estimation</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="seed_analysis.html">Seed correlation/coherence with fMRI data</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="grasshopper.html">Auditory processing in grasshoppers</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="mtm_harmonic_test.html">Multitaper F-test for harmonic components</a></li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="resting_state_fmri.html">Coherency analysis of fMRI data</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="ar_model_fit.html">Fitting an MAR model: analyzer interface</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="event_related_fmri.html">Event-related fMRI</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="ar_est_3vars.html">Multivariate auto-regressive modeling - 3 variables</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="snr_example.html">Calculation of signal-to-noise and information</a></li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="mtm_baseband_power.html">Multitaper method for baseband demodulation</a><ul>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="mtm_baseband_power.html#test-1">Test 1</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="mtm_baseband_power.html#test-2">Test 2</a></li>
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="snr_example.html">Calculation of signal-to-noise and information</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="multi_taper_spectral_estimation.html">Multitaper spectral estimation</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="ar_model_fit.html">Fitting an MAR model: analyzer interface</a></li>
│ │ │ │  </ul>
│ │ │ │  </div>
│ │ │ │  </section>
│ │ │ │  
│ │ │ │  
│ │ │ │              <div class="clearer"></div>
│ │ │ │            </div>
│ │ │ │ @@ -127,16 +127,16 @@
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │      <p class="topless"><a href="../whatsnew/version0.3.html"
│ │ │ │                            title="previous chapter">Release notes for nitime version 0.3</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="ar_est_3vars.html"
│ │ │ │ -                          title="next chapter">Multivariate auto-regressive modeling - 3 variables</a></p>
│ │ │ │ +    <p class="topless"><a href="filtering_fmri.html"
│ │ │ │ +                          title="next chapter">Filtering and normalizing fMRI data</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -154,15 +154,15 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │ +          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../whatsnew/version0.3.html" title="Release notes for nitime version 0.3"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -16,45 +16,45 @@
│ │ │ │ │  ffuunnccttiioonniinngg python scripts, which are available as part of the source
│ │ │ │ │  distribution in the doc/examples folder.
│ │ │ │ │  If you want to replicate a particular analysis or visualization, simply copy
│ │ │ │ │  the relevant “.py” script from the source distribution, or download the script
│ │ │ │ │  using the link at the bottom of each page.
│ │ │ │ │  Thanks to the developers of _P_y_M_V_P_A for designing the software which enables us
│ │ │ │ │  to provide these documented examples!
│ │ │ │ │ -    * _M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g_ _-_ _3_ _v_a_r_i_a_b_l_e_s
│ │ │ │ │ -    * _F_i_t_t_i_n_g_ _a_n_ _A_R_ _m_o_d_e_l_:_ _a_l_g_o_r_i_t_h_m_ _m_o_d_u_l_e_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │ -    * _M_u_l_t_i_t_a_p_e_r_ _F_-_t_e_s_t_ _f_o_r_ _h_a_r_m_o_n_i_c_ _c_o_m_p_o_n_e_n_t_s
│ │ │ │ │      * _F_i_l_t_e_r_i_n_g_ _a_n_d_ _n_o_r_m_a_l_i_z_i_n_g_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ +    * _F_i_t_t_i_n_g_ _a_n_ _A_R_ _m_o_d_e_l_:_ _a_l_g_o_r_i_t_h_m_ _m_o_d_u_l_e_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │ +    * _E_v_e_n_t_-_r_e_l_a_t_e_d_ _f_M_R_I
│ │ │ │ │ +    * _S_e_e_d_ _c_o_r_r_e_l_a_t_i_o_n_/_c_o_h_e_r_e_n_c_e_ _w_i_t_h_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ +    * _M_u_l_t_i_t_a_p_e_r_ _s_p_e_c_t_r_a_l_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │ +    * _A_u_d_i_t_o_r_y_ _p_r_o_c_e_s_s_i_n_g_ _i_n_ _g_r_a_s_s_h_o_p_p_e_r_s
│ │ │ │ │ +    * _M_u_l_t_i_t_a_p_e_r_ _c_o_h_e_r_e_n_c_e_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │      * _G_r_a_n_g_e_r_ _‘_c_a_u_s_a_l_i_t_y_’_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │            o _R_e_f_e_r_e_n_c_e_s
│ │ │ │ │      * _M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g
│ │ │ │ │ -    * _M_u_l_t_i_t_a_p_e_r_ _c_o_h_e_r_e_n_c_e_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │ -    * _S_e_e_d_ _c_o_r_r_e_l_a_t_i_o_n_/_c_o_h_e_r_e_n_c_e_ _w_i_t_h_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ -    * _A_u_d_i_t_o_r_y_ _p_r_o_c_e_s_s_i_n_g_ _i_n_ _g_r_a_s_s_h_o_p_p_e_r_s
│ │ │ │ │ +    * _M_u_l_t_i_t_a_p_e_r_ _F_-_t_e_s_t_ _f_o_r_ _h_a_r_m_o_n_i_c_ _c_o_m_p_o_n_e_n_t_s
│ │ │ │ │      * _C_o_h_e_r_e_n_c_y_ _a_n_a_l_y_s_i_s_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ -    * _F_i_t_t_i_n_g_ _a_n_ _M_A_R_ _m_o_d_e_l_:_ _a_n_a_l_y_z_e_r_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │ -    * _E_v_e_n_t_-_r_e_l_a_t_e_d_ _f_M_R_I
│ │ │ │ │ +    * _M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g_ _-_ _3_ _v_a_r_i_a_b_l_e_s
│ │ │ │ │ +    * _C_a_l_c_u_l_a_t_i_o_n_ _o_f_ _s_i_g_n_a_l_-_t_o_-_n_o_i_s_e_ _a_n_d_ _i_n_f_o_r_m_a_t_i_o_n
│ │ │ │ │      * _M_u_l_t_i_t_a_p_e_r_ _m_e_t_h_o_d_ _f_o_r_ _b_a_s_e_b_a_n_d_ _d_e_m_o_d_u_l_a_t_i_o_n
│ │ │ │ │            o _T_e_s_t_ _1
│ │ │ │ │            o _T_e_s_t_ _2
│ │ │ │ │ -    * _C_a_l_c_u_l_a_t_i_o_n_ _o_f_ _s_i_g_n_a_l_-_t_o_-_n_o_i_s_e_ _a_n_d_ _i_n_f_o_r_m_a_t_i_o_n
│ │ │ │ │ -    * _M_u_l_t_i_t_a_p_e_r_ _s_p_e_c_t_r_a_l_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │ +    * _F_i_t_t_i_n_g_ _a_n_ _M_A_R_ _m_o_d_e_l_:_ _a_n_a_l_y_z_e_r_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │  ****** SSiittee NNaavviiggaattiioonn ******
│ │ │ │ │      * _D_o_c_u_m_e_n_t_a_t_i_o_n
│ │ │ │ │      * _D_e_v_e_l_o_p_m_e_n_t
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │  _R_e_l_e_a_s_e_ _n_o_t_e_s_ _f_o_r_ _n_i_t_i_m_e_ _v_e_r_s_i_o_n_ _0_._3
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g_ _-_ _3_ _v_a_r_i_a_b_l_e_s
│ │ │ │ │ +_F_i_l_t_e_r_i_n_g_ _a_n_d_ _n_o_r_m_a_l_i_z_i_n_g_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/mtm_baseband_power.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Calculation of signal-to-noise and information" href="snr_example.html" />
│ │ │ │ -    <link rel="prev" title="Event-related fMRI" href="event_related_fmri.html" />
│ │ │ │ +    <link rel="next" title="Fitting an MAR model: analyzer interface" href="ar_model_fit.html" />
│ │ │ │ +    <link rel="prev" title="Calculation of signal-to-noise and information" href="snr_example.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │ +          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │ +          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -238,21 +238,21 @@
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │  </ul>
│ │ │ │  
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="event_related_fmri.html"
│ │ │ │ -                          title="previous chapter">Event-related fMRI</a></p>
│ │ │ │ +    <p class="topless"><a href="snr_example.html"
│ │ │ │ +                          title="previous chapter">Calculation of signal-to-noise and information</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="snr_example.html"
│ │ │ │ -                          title="next chapter">Calculation of signal-to-noise and information</a></p>
│ │ │ │ +    <p class="topless"><a href="ar_model_fit.html"
│ │ │ │ +                          title="next chapter">Fitting an MAR model: analyzer interface</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -270,18 +270,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │ +          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │ +          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -125,17 +125,17 @@
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ******** _TT_aa_bb_ll_ee_ _oo_ff_ _CC_oo_nn_tt_ee_nn_tt_ss ********
│ │ │ │ │      * _M_u_l_t_i_t_a_p_e_r_ _m_e_t_h_o_d_ _f_o_r_ _b_a_s_e_b_a_n_d_ _d_e_m_o_d_u_l_a_t_i_o_n
│ │ │ │ │            o _T_e_s_t_ _1
│ │ │ │ │            o _T_e_s_t_ _2
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_E_v_e_n_t_-_r_e_l_a_t_e_d_ _f_M_R_I
│ │ │ │ │ -****** NNeexxtt ttooppiicc ******
│ │ │ │ │  _C_a_l_c_u_l_a_t_i_o_n_ _o_f_ _s_i_g_n_a_l_-_t_o_-_n_o_i_s_e_ _a_n_d_ _i_n_f_o_r_m_a_t_i_o_n
│ │ │ │ │ +****** NNeexxtt ttooppiicc ******
│ │ │ │ │ +_F_i_t_t_i_n_g_ _a_n_ _M_A_R_ _m_o_d_e_l_:_ _a_n_a_l_y_z_e_r_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/mtm_harmonic_test.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Filtering and normalizing fMRI data" href="filtering_fmri.html" />
│ │ │ │ -    <link rel="prev" title="Fitting an AR model: algorithm module interface" href="ar_est_1var.html" />
│ │ │ │ +    <link rel="next" title="Coherency analysis of fMRI data" href="resting_state_fmri.html" />
│ │ │ │ +    <link rel="prev" title="Multivariate auto-regressive modeling" href="ar_est_2vars.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │ +          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │ +          <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -204,21 +204,21 @@
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="ar_est_1var.html"
│ │ │ │ -                          title="previous chapter">Fitting an AR model: algorithm module interface</a></p>
│ │ │ │ +    <p class="topless"><a href="ar_est_2vars.html"
│ │ │ │ +                          title="previous chapter">Multivariate auto-regressive modeling</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="filtering_fmri.html"
│ │ │ │ -                          title="next chapter">Filtering and normalizing fMRI data</a></p>
│ │ │ │ +    <p class="topless"><a href="resting_state_fmri.html"
│ │ │ │ +                          title="next chapter">Coherency analysis of fMRI data</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -236,18 +236,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │ +          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │ +          <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -111,17 +111,17 @@
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_F_i_t_t_i_n_g_ _a_n_ _A_R_ _m_o_d_e_l_:_ _a_l_g_o_r_i_t_h_m_ _m_o_d_u_l_e_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │ +_M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_F_i_l_t_e_r_i_n_g_ _a_n_d_ _n_o_r_m_a_l_i_z_i_n_g_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ +_C_o_h_e_r_e_n_c_y_ _a_n_a_l_y_s_i_s_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_coh.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Seed correlation/coherence with fMRI data" href="seed_analysis.html" />
│ │ │ │ -    <link rel="prev" title="Multivariate auto-regressive modeling" href="ar_est_2vars.html" />
│ │ │ │ +    <link rel="next" title="Granger ‘causality’ of fMRI data" href="granger_fmri.html" />
│ │ │ │ +    <link rel="prev" title="Auditory processing in grasshoppers" href="grasshopper.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │ +          <a href="granger_fmri.html" title="Granger ‘causality’ of fMRI data"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │ +          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -313,21 +313,21 @@
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="ar_est_2vars.html"
│ │ │ │ -                          title="previous chapter">Multivariate auto-regressive modeling</a></p>
│ │ │ │ +    <p class="topless"><a href="grasshopper.html"
│ │ │ │ +                          title="previous chapter">Auditory processing in grasshoppers</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="seed_analysis.html"
│ │ │ │ -                          title="next chapter">Seed correlation/coherence with fMRI data</a></p>
│ │ │ │ +    <p class="topless"><a href="granger_fmri.html"
│ │ │ │ +                          title="next chapter">Granger ‘causality’ of fMRI data</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -345,18 +345,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │ +          <a href="granger_fmri.html" title="Granger ‘causality’ of fMRI data"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │ +          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -190,17 +190,17 @@
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g
│ │ │ │ │ +_A_u_d_i_t_o_r_y_ _p_r_o_c_e_s_s_i_n_g_ _i_n_ _g_r_a_s_s_h_o_p_p_e_r_s
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_S_e_e_d_ _c_o_r_r_e_l_a_t_i_o_n_/_c_o_h_e_r_e_n_c_e_ _w_i_t_h_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │ +_G_r_a_n_g_e_r_ _‘_c_a_u_s_a_l_i_t_y_’_ _o_f_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_spectral_estimation.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Discussion" href="../discussion/index.html" />
│ │ │ │ -    <link rel="prev" title="Calculation of signal-to-noise and information" href="snr_example.html" />
│ │ │ │ +    <link rel="next" title="Auditory processing in grasshoppers" href="grasshopper.html" />
│ │ │ │ +    <link rel="prev" title="Seed correlation/coherence with fMRI data" href="seed_analysis.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="../discussion/index.html" title="Discussion"
│ │ │ │ +          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │ +          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -415,21 +415,21 @@
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="snr_example.html"
│ │ │ │ -                          title="previous chapter">Calculation of signal-to-noise and information</a></p>
│ │ │ │ +    <p class="topless"><a href="seed_analysis.html"
│ │ │ │ +                          title="previous chapter">Seed correlation/coherence with fMRI data</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="../discussion/index.html"
│ │ │ │ -                          title="next chapter">Discussion</a></p>
│ │ │ │ +    <p class="topless"><a href="grasshopper.html"
│ │ │ │ +                          title="next chapter">Auditory processing in grasshoppers</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -447,18 +447,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="../discussion/index.html" title="Discussion"
│ │ │ │ +          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │ +          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -283,17 +283,17 @@
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_C_a_l_c_u_l_a_t_i_o_n_ _o_f_ _s_i_g_n_a_l_-_t_o_-_n_o_i_s_e_ _a_n_d_ _i_n_f_o_r_m_a_t_i_o_n
│ │ │ │ │ +_S_e_e_d_ _c_o_r_r_e_l_a_t_i_o_n_/_c_o_h_e_r_e_n_c_e_ _w_i_t_h_ _f_M_R_I_ _d_a_t_a
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_D_i_s_c_u_s_s_i_o_n
│ │ │ │ │ +_A_u_d_i_t_o_r_y_ _p_r_o_c_e_s_s_i_n_g_ _i_n_ _g_r_a_s_s_h_o_p_p_e_r_s
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/resting_state_fmri.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Fitting an MAR model: analyzer interface" href="ar_model_fit.html" />
│ │ │ │ -    <link rel="prev" title="Auditory processing in grasshoppers" href="grasshopper.html" />
│ │ │ │ +    <link rel="next" title="Multivariate auto-regressive modeling - 3 variables" href="ar_est_3vars.html" />
│ │ │ │ +    <link rel="prev" title="Multitaper F-test for harmonic components" href="mtm_harmonic_test.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │ +          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │ +          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -359,21 +359,21 @@
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="grasshopper.html"
│ │ │ │ -                          title="previous chapter">Auditory processing in grasshoppers</a></p>
│ │ │ │ +    <p class="topless"><a href="mtm_harmonic_test.html"
│ │ │ │ +                          title="previous chapter">Multitaper F-test for harmonic components</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="ar_model_fit.html"
│ │ │ │ -                          title="next chapter">Fitting an MAR model: analyzer interface</a></p>
│ │ │ │ +    <p class="topless"><a href="ar_est_3vars.html"
│ │ │ │ +                          title="next chapter">Multivariate auto-regressive modeling - 3 variables</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -391,18 +391,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │ +          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │ +          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -238,17 +238,17 @@
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_A_u_d_i_t_o_r_y_ _p_r_o_c_e_s_s_i_n_g_ _i_n_ _g_r_a_s_s_h_o_p_p_e_r_s
│ │ │ │ │ +_M_u_l_t_i_t_a_p_e_r_ _F_-_t_e_s_t_ _f_o_r_ _h_a_r_m_o_n_i_c_ _c_o_m_p_o_n_e_n_t_s
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_F_i_t_t_i_n_g_ _a_n_ _M_A_R_ _m_o_d_e_l_:_ _a_n_a_l_y_z_e_r_ _i_n_t_e_r_f_a_c_e
│ │ │ │ │ +_M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g_ _-_ _3_ _v_a_r_i_a_b_l_e_s
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/seed_analysis.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Auditory processing in grasshoppers" href="grasshopper.html" />
│ │ │ │ -    <link rel="prev" title="Multitaper coherence estimation" href="multi_taper_coh.html" />
│ │ │ │ +    <link rel="next" title="Multitaper spectral estimation" href="multi_taper_spectral_estimation.html" />
│ │ │ │ +    <link rel="prev" title="Event-related fMRI" href="event_related_fmri.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │ +          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │ +          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -267,21 +267,21 @@
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <div>
│ │ │ │      <h4>Previous topic</h4>
│ │ │ │ -    <p class="topless"><a href="multi_taper_coh.html"
│ │ │ │ -                          title="previous chapter">Multitaper coherence estimation</a></p>
│ │ │ │ +    <p class="topless"><a href="event_related_fmri.html"
│ │ │ │ +                          title="previous chapter">Event-related fMRI</a></p>
│ │ │ │    </div>
│ │ │ │    <div>
│ │ │ │      <h4>Next topic</h4>
│ │ │ │ -    <p class="topless"><a href="grasshopper.html"
│ │ │ │ -                          title="next chapter">Auditory processing in grasshoppers</a></p>
│ │ │ │ +    <p class="topless"><a href="multi_taper_spectral_estimation.html"
│ │ │ │ +                          title="next chapter">Multitaper spectral estimation</a></p>
│ │ │ │    </div>
│ │ │ │  <search id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │ @@ -299,18 +299,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │ +          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │ +          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -159,17 +159,17 @@
│ │ │ │ │      * _N_e_w_s
│ │ │ │ │  ****** NNIIPPYY CCoommmmuunniittyy ******
│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
│ │ │ │ │      * _M_a_i_l_i_n_g_ _L_i_s_t
│ │ │ │ │      * _L_i_c_e_n_s_e
│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_M_u_l_t_i_t_a_p_e_r_ _c_o_h_e_r_e_n_c_e_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │ +_E_v_e_n_t_-_r_e_l_a_t_e_d_ _f_M_R_I
│ │ │ │ │  ****** NNeexxtt ttooppiicc ******
│ │ │ │ │ -_A_u_d_i_t_o_r_y_ _p_r_o_c_e_s_s_i_n_g_ _i_n_ _g_r_a_s_s_h_o_p_p_e_r_s
│ │ │ │ │ +_M_u_l_t_i_t_a_p_e_r_ _s_p_e_c_t_r_a_l_ _e_s_t_i_m_a_t_i_o_n
│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
│ │ │ │ │  [q                   ][Go]
│ │ │ │ │  ******** NNaavviiggaattiioonn ********
│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/snr_example.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/plot_directive.css" />
│ │ │ │      <script src="../_static/documentation_options.js?v=7ca673de"></script>
│ │ │ │      <script src="../_static/doctools.js?v=9a2dae69"></script>
│ │ │ │      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Multitaper spectral estimation" href="multi_taper_spectral_estimation.html" />
│ │ │ │ -    <link rel="prev" title="Multitaper method for baseband demodulation" href="mtm_baseband_power.html" />
│ │ │ │ +    <link rel="next" title="Multitaper method for baseband demodulation" href="mtm_baseband_power.html" />
│ │ │ │ +    <link rel="prev" title="Multivariate auto-regressive modeling - 3 variables" href="ar_est_3vars.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │ +          <a href="mtm_baseband_power.html" title="Multitaper method for baseband demodulation"
│ │ │ │               accesskey="N">next</a> |</li>
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│ │ │ │ ├── html2text {}
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│ │ │ │ │      * _N_e_w_s
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│ │ │ │ │      * _C_o_m_m_u_n_i_t_y_ _H_o_m_e
│ │ │ │ │      * _N_I_P_Y_ _P_r_o_j_e_c_t_s
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│ │ │ │ │  ****** PPrreevviioouuss ttooppiicc ******
│ │ │ │ │ -_M_u_l_t_i_t_a_p_e_r_ _m_e_t_h_o_d_ _f_o_r_ _b_a_s_e_b_a_n_d_ _d_e_m_o_d_u_l_a_t_i_o_n
│ │ │ │ │ +_M_u_l_t_i_v_a_r_i_a_t_e_ _a_u_t_o_-_r_e_g_r_e_s_s_i_v_e_ _m_o_d_e_l_i_n_g_ _-_ _3_ _v_a_r_i_a_b_l_e_s
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│ │ │ │ │  ******** QQuuiicckk sseeaarrcchh ********
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│ │ │ │ │      * _i_n_d_e_x
│ │ │ │ │      * _m_o_d_u_l_e_s |
│ │ │ │ │      * _n_e_x_t |
│ │ │ │ │      * _p_r_e_v_i_o_u_s |