--- /srv/reproducible-results/rbuild-debian/r-b-build.KnuMa8gY/b1/bmtk_1.1.0+ds-1_amd64.changes
+++ /srv/reproducible-results/rbuild-debian/r-b-build.KnuMa8gY/b2/bmtk_1.1.0+ds-1_amd64.changes
├── Files
│ @@ -1,4 +1,4 @@
│  
│ - bd0fe7a081de3946d6c2a7d10ba0a83b 52874060 doc optional python3-bmtk-doc_1.1.0+ds-1_all.deb
│ + 4ae67be8c09eb35291f0370da2121c0f 52874064 doc optional python3-bmtk-doc_1.1.0+ds-1_all.deb
│   7cf5f6169622db4baff75a2330044c1c 30914904 python optional python3-bmtk-examples_1.1.0+ds-1_all.deb
│   fc451527050a2ae77e7bd80fe747d470 527648 python optional python3-bmtk_1.1.0+ds-1_amd64.deb
├── python3-bmtk-doc_1.1.0+ds-1_all.deb
│ ├── file list
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│ │  -rw-r--r--   0        0        0        4 2024-04-24 10:15:57.000000 debian-binary
│ │ --rw-r--r--   0        0        0    14668 2024-04-24 10:15:57.000000 control.tar.xz
│ │ +-rw-r--r--   0        0        0    14672 2024-04-24 10:15:57.000000 control.tar.xz
│ │  -rw-r--r--   0        0        0 52859200 2024-04-24 10:15:57.000000 data.tar.xz
│ ├── control.tar.xz
│ │ ├── control.tar
│ │ │ ├── ./md5sums
│ │ │ │ ├── ./md5sums
│ │ │ │ │┄ Files differ
│ │ ├── xz --list
│ │ │ @@ -1,13 +1,13 @@
│ │ │    Streams:           1
│ │ │    Blocks:            1
│ │ │ -  Compressed size:   14.3 KiB (14668 B)
│ │ │ +  Compressed size:   14.3 KiB (14672 B)
│ │ │    Uncompressed size: 70.0 KiB (71680 B)
│ │ │    Ratio:             0.205
│ │ │    Check:             CRC64
│ │ │    Stream Padding:    0 B
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│ │ │ -         1         1               0               0           14668           71680  0.205  CRC64            0
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│ ├── data.tar.xz
│ │ ├── data.tar
│ │ │ ├── ./usr/share/doc/python3-bmtk-doc/html/tutorial_bionet_disconnected_sims.html
│ │ │ │ @@ -875,15 +875,15 @@
│ │ │ │  }
│ │ │ │  </style>
│ │ │ │  <section id="Replaying-Parts-of-a-Simulation">
│ │ │ │  <h1>Replaying Parts of a Simulation<a class="headerlink" href="#Replaying-Parts-of-a-Simulation" title="Link to this heading">¶</a></h1>
│ │ │ │  <p>When simulating a bio-realistic network, cells will recieve synaptic stimulation from both locally recurrent connections as-well-as feedforward connections from external inputs. Often when analyzing the results of a full network activity we would like to know the contribution of only a subset of the synaptic activity. For example, how much does the feedforward synapses, or only recurrent synapses between specific population of cells, contributed to the simulation results. Certain techniques,
│ │ │ │  like running with only a subset of the full network, or using optogenetic/current-clamping to turn on-off subpoluations, can provide useful insights but also not tell the full story of a network simulation.</p>
│ │ │ │  <p>Instead we can used the BMTK “replay” input module to disentangle subsections of a simulation activity from the full network in BioNet/biophysically realistic simulations. The BMTK “replay” module let’s the user take a previous simulation, and replay a simulation but using only activity for only a subset of the synapses. This can be helpful in parameter tuning and optimization, and for very large networks can provide an efficient manner to replay small subsets of a full network.</p>
│ │ │ │ -<div><p><img alt="15d687341b5e43699eb280398780ea66" class="no-scaled-link" src="_images/disconnected_sim_figure.png" style="width: 700px;" /></p>
│ │ │ │ +<div><p><img alt="004909301ef64228ac56c50b2948d792" class="no-scaled-link" src="_images/disconnected_sim_figure.png" style="width: 700px;" /></p>
│ │ │ │  </div><div class="nbinput nblast docutils container">
│ │ │ │  <div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[1]:
│ │ │ │  </pre></div>
│ │ │ │  </div>
│ │ │ │  <div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre><span></span>from bmtk.simulator import bionet
│ │ │ │  from bmtk.analyzer.spike_trains import plot_raster
│ │ │ │  </pre></div>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -14,15 +14,15 @@
│ │ │ │ │  Instead we can used the BMTK “replay” input module to disentangle subsections
│ │ │ │ │  of a simulation activity from the full network in BioNet/biophysically
│ │ │ │ │  realistic simulations. The BMTK “replay” module let’s the user take a previous
│ │ │ │ │  simulation, and replay a simulation but using only activity for only a subset
│ │ │ │ │  of the synapses. This can be helpful in parameter tuning and optimization, and
│ │ │ │ │  for very large networks can provide an efficient manner to replay small subsets
│ │ │ │ │  of a full network.
│ │ │ │ │ -[15d687341b5e43699eb280398780ea66]
│ │ │ │ │ +[004909301ef64228ac56c50b2948d792]
│ │ │ │ │  [1]:
│ │ │ │ │  from bmtk.simulator import bionet
│ │ │ │ │  from bmtk.analyzer.spike_trains import plot_raster
│ │ │ │ │  ********** IInniittiiaall SSiimmuullaattiioonn ((GGeenneerraattiinngg aa BBaasseelliinnee ffoorr SSyynnaappttiicc AAccttiivviittyy))_?¶ **********
│ │ │ │ │  First step is to take an existing network + simulation or build one from
│ │ │ │ │  scratch. For more information on how to build and run BioNet simulations please
│ │ │ │ │  see existing _t_u_t_o_r_i_a_l_s. For our example we copy the _b_i_o_n_e_t___4_5_0_c_e_l_l_ _e_x_a_m_p_l_e