--- /srv/reproducible-results/rbuild-debian/r-b-build.EsSTMZO7/b1/nitime_0.9-1_amd64.changes
+++ /srv/reproducible-results/rbuild-debian/r-b-build.EsSTMZO7/b2/nitime_0.9-1_amd64.changes
├── Files
│ @@ -1,3 +1,3 @@
│  
│ - fa9fdf5070e7963a1a8aa0724d42a6a6 2396552 doc optional python-nitime-doc_0.9-1_all.deb
│ + b566243992394935046da81e08ba86be 2396512 doc optional python-nitime-doc_0.9-1_all.deb
│   be8ef11c4bdedde33f3e700600af2108 2539880 python optional python3-nitime_0.9-1_all.deb
├── python-nitime-doc_0.9-1_all.deb
│ ├── file list
│ │ @@ -1,3 +1,3 @@
│ │  -rw-r--r--   0        0        0        4 2020-12-20 14:50:57.000000 debian-binary
│ │ --rw-r--r--   0        0        0     5044 2020-12-20 14:50:57.000000 control.tar.xz
│ │ --rw-r--r--   0        0        0  2391316 2020-12-20 14:50:57.000000 data.tar.xz
│ │ +-rw-r--r--   0        0        0     5040 2020-12-20 14:50:57.000000 control.tar.xz
│ │ +-rw-r--r--   0        0        0  2391280 2020-12-20 14:50:57.000000 data.tar.xz
│ ├── control.tar.xz
│ │ ├── control.tar
│ │ │ ├── ./md5sums
│ │ │ │ ├── ./md5sums
│ │ │ │ │┄ Files differ
│ ├── data.tar.xz
│ │ ├── data.tar
│ │ │ ├── file list
│ │ │ │ @@ -127,36 +127,36 @@
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     9086 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/devel/how_to_release.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     8044 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/devel/index.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    19208 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/devel/patching.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    13823 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/devel/set_up_fork.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     4324 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/devel/usecases.html
│ │ │ │  drwxr-xr-x   0 root         (0) root         (0)        0 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/discussion/
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    17537 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/discussion/base_classes.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)     6511 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/discussion/index.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)     6491 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/discussion/index.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    19286 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/discussion/interval_object.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    12722 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/discussion/multitaper_jackknife.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     6335 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/discussion/note_about_discussion.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    20344 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/discussion/time_series_access.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    13352 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/documentation.html
│ │ │ │  drwxr-xr-x   0 root         (0) root         (0)        0 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    15852 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_1var.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    34619 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_2vars.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    35689 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_3vars.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    20041 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_model_fit.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    17163 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/event_related_fmri.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    47924 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/filtering_fmri.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    25475 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/granger_fmri.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    25734 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/grasshopper.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)     8768 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/index.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    28203 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/mtm_baseband_power.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    28772 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/mtm_harmonic_test.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    37270 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_coh.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    43573 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_spectral_estimation.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    35262 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/resting_state_fmri.html
│ │ │ │ --rw-r--r--   0 root         (0) root         (0)    28299 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/seed_analysis.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    15860 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_1var.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    34591 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_2vars.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    35773 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_est_3vars.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    20093 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/ar_model_fit.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    17231 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/event_related_fmri.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    48068 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/filtering_fmri.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    25463 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/granger_fmri.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    25822 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/grasshopper.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)     8816 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/index.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    28223 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/mtm_baseband_power.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    28760 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/mtm_harmonic_test.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    37174 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_coh.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    43305 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_spectral_estimation.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    35146 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/resting_state_fmri.html
│ │ │ │ +-rw-r--r--   0 root         (0) root         (0)    28339 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/seed_analysis.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    20898 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/examples/snr_example.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    68809 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/genindex.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     5768 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/index.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     4490 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/news.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    10653 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/py-modindex.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)     4318 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/search.html
│ │ │ │  -rw-r--r--   0 root         (0) root         (0)    80926 2020-12-20 14:50:57.000000 ./usr/share/doc/python-nitime-doc/html/searchindex.js
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/discussion/index.html
│ │ │ │ @@ -12,15 +12,15 @@
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │      <link rel="next" title="A note about the discussion section" href="note_about_discussion.html" />
│ │ │ │ -    <link rel="prev" title="Seed correlation/coherence with fMRI data" href="../examples/seed_analysis.html" />
│ │ │ │ +    <link rel="prev" title="Coherency analysis of fMRI data" href="../examples/resting_state_fmri.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -35,15 +35,15 @@
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="note_about_discussion.html" title="A note about the discussion section"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="../examples/seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │ +          <a href="../examples/resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" accesskey="U">Nitime Documentation</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │      </div>  
│ │ │ │ @@ -97,16 +97,16 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="../examples/seed_analysis.html"
│ │ │ │ -                        title="previous chapter">Seed correlation/coherence with fMRI data</a></p>
│ │ │ │ +  <p class="topless"><a href="../examples/resting_state_fmri.html"
│ │ │ │ +                        title="previous chapter">Coherency analysis of fMRI data</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │    <p class="topless"><a href="note_about_discussion.html"
│ │ │ │                          title="next chapter">A note about the discussion section</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │ @@ -129,15 +129,15 @@
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="note_about_discussion.html" title="A note about the discussion section"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="../examples/seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │ +          <a href="../examples/resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │      </div>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -31,15 +31,15 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Seed_correlation/coherence_with_fMRI_data
│ │ │ │ │ +Coherency_analysis_of_fMRI_data
│ │ │ │ │  *** Next topic ***
│ │ │ │ │  A_note_about_the_discussion_section
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/documentation.html
│ │ │ │┄ Ordering differences only
│ │ │ │ @@ -71,29 +71,29 @@
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="whatsnew/version0.6.html">Release notes for nitime version 0.6</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="whatsnew/version0.5.html">Release notes for nitime version 0.5</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="whatsnew/version0.4.html">Release notes for nitime version 0.4</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="whatsnew/version0.3.html">Release notes for nitime version 0.3</a></li>
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="examples/index.html">Examples</a><ul>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/filtering_fmri.html">Filtering and normalizing fMRI data</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/multi_taper_spectral_estimation.html">Multitaper spectral estimation</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/event_related_fmri.html">Event-related fMRI</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/seed_analysis.html">Seed correlation/coherence with fMRI data</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="examples/mtm_baseband_power.html">Multitaper method for baseband demodulation</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="examples/granger_fmri.html">Granger ‘causality’ of fMRI data</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/multi_taper_coh.html">Multitaper coherence estimation</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="examples/ar_est_2vars.html">Multivariate auto-regressive modeling</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/snr_example.html">Calculation of signal-to-noise and information</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/grasshopper.html">Auditory processing in grasshoppers</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/event_related_fmri.html">Event-related fMRI</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="examples/ar_model_fit.html">Fitting an MAR model: analyzer interface</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/resting_state_fmri.html">Coherency analysis of fMRI data</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/filtering_fmri.html">Filtering and normalizing fMRI data</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/mtm_harmonic_test.html">Multitaper F-test for harmonic components</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="examples/ar_est_3vars.html">Multivariate auto-regressive modeling - 3 variables</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/multi_taper_coh.html">Multitaper coherence estimation</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="examples/ar_est_1var.html">Fitting an AR model: algorithm module interface</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/multi_taper_spectral_estimation.html">Multitaper spectral estimation</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/mtm_harmonic_test.html">Multitaper F-test for harmonic components</a></li>
│ │ │ │ -<li class="toctree-l2"><a class="reference internal" href="examples/seed_analysis.html">Seed correlation/coherence with fMRI data</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/grasshopper.html">Auditory processing in grasshoppers</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/snr_example.html">Calculation of signal-to-noise and information</a></li>
│ │ │ │ +<li class="toctree-l2"><a class="reference internal" href="examples/resting_state_fmri.html">Coherency analysis of fMRI data</a></li>
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="discussion/index.html">Discussion</a><ul>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="discussion/note_about_discussion.html">A note about the discussion section</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="discussion/multitaper_jackknife.html">Jack-knifing a Multitaper SDF estimator</a></li>
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -27,29 +27,29 @@
│ │ │ │ │      * What’s_new_in_Nitime
│ │ │ │ │            o Release_notes_for_nitime_version_0.7
│ │ │ │ │            o Release_notes_for_nitime_version_0.6
│ │ │ │ │            o Release_notes_for_nitime_version_0.5
│ │ │ │ │            o Release_notes_for_nitime_version_0.4
│ │ │ │ │            o Release_notes_for_nitime_version_0.3
│ │ │ │ │      * Examples
│ │ │ │ │ -          o Filtering_and_normalizing_fMRI_data
│ │ │ │ │ +          o Multitaper_spectral_estimation
│ │ │ │ │ +          o Event-related_fMRI
│ │ │ │ │ +          o Seed_correlation/coherence_with_fMRI_data
│ │ │ │ │            o Multitaper_method_for_baseband_demodulation
│ │ │ │ │            o Granger_‘causality’_of_fMRI_data
│ │ │ │ │ +          o Multitaper_coherence_estimation
│ │ │ │ │            o Multivariate_auto-regressive_modeling
│ │ │ │ │ -          o Calculation_of_signal-to-noise_and_information
│ │ │ │ │ -          o Auditory_processing_in_grasshoppers
│ │ │ │ │ -          o Event-related_fMRI
│ │ │ │ │            o Fitting_an_MAR_model:_analyzer_interface
│ │ │ │ │ -          o Coherency_analysis_of_fMRI_data
│ │ │ │ │ +          o Filtering_and_normalizing_fMRI_data
│ │ │ │ │ +          o Multitaper_F-test_for_harmonic_components
│ │ │ │ │            o Multivariate_auto-regressive_modeling_-_3_variables
│ │ │ │ │ -          o Multitaper_coherence_estimation
│ │ │ │ │            o Fitting_an_AR_model:_algorithm_module_interface
│ │ │ │ │ -          o Multitaper_spectral_estimation
│ │ │ │ │ -          o Multitaper_F-test_for_harmonic_components
│ │ │ │ │ -          o Seed_correlation/coherence_with_fMRI_data
│ │ │ │ │ +          o Auditory_processing_in_grasshoppers
│ │ │ │ │ +          o Calculation_of_signal-to-noise_and_information
│ │ │ │ │ +          o Coherency_analysis_of_fMRI_data
│ │ │ │ │      * Discussion
│ │ │ │ │            o A_note_about_the_discussion_section
│ │ │ │ │            o Jack-knifing_a_Multitaper_SDF_estimator
│ │ │ │ │      * Working_with_nitime_source_code
│ │ │ │ │            o Introduction
│ │ │ │ │            o Install_git
│ │ │ │ │            o Following_the_latest_source
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/ar_est_1var.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Multitaper spectral estimation" href="multi_taper_spectral_estimation.html" />
│ │ │ │ -    <link rel="prev" title="Multitaper coherence estimation" href="multi_taper_coh.html" />
│ │ │ │ +    <link rel="next" title="Auditory processing in grasshoppers" href="grasshopper.html" />
│ │ │ │ +    <link rel="prev" title="Multivariate auto-regressive modeling - 3 variables" href="ar_est_3vars.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │ +          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │ +          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -153,19 +153,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="multi_taper_coh.html"
│ │ │ │ -                        title="previous chapter">Multitaper coherence estimation</a></p>
│ │ │ │ +  <p class="topless"><a href="ar_est_3vars.html"
│ │ │ │ +                        title="previous chapter">Multivariate auto-regressive modeling - 3 variables</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="multi_taper_spectral_estimation.html"
│ │ │ │ -                        title="next chapter">Multitaper spectral estimation</a></p>
│ │ │ │ +  <p class="topless"><a href="grasshopper.html"
│ │ │ │ +                        title="next chapter">Auditory processing in grasshoppers</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -182,18 +182,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │ +          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │ +          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -78,17 +78,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Multitaper_coherence_estimation
│ │ │ │ │ +Multivariate_auto-regressive_modeling_-_3_variables
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Multitaper_spectral_estimation
│ │ │ │ │ +Auditory_processing_in_grasshoppers
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/ar_est_2vars.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Calculation of signal-to-noise and information" href="snr_example.html" />
│ │ │ │ -    <link rel="prev" title="Granger ‘causality’ of fMRI data" href="granger_fmri.html" />
│ │ │ │ +    <link rel="next" title="Fitting an MAR model: analyzer interface" href="ar_model_fit.html" />
│ │ │ │ +    <link rel="prev" title="Multitaper coherence estimation" href="multi_taper_coh.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │ +          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="granger_fmri.html" title="Granger ‘causality’ of fMRI data"
│ │ │ │ +          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -318,19 +318,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="granger_fmri.html"
│ │ │ │ -                        title="previous chapter">Granger ‘causality’ of fMRI data</a></p>
│ │ │ │ +  <p class="topless"><a href="multi_taper_coh.html"
│ │ │ │ +                        title="previous chapter">Multitaper coherence estimation</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="snr_example.html"
│ │ │ │ -                        title="next chapter">Calculation of signal-to-noise and information</a></p>
│ │ │ │ +  <p class="topless"><a href="ar_model_fit.html"
│ │ │ │ +                        title="next chapter">Fitting an MAR model: analyzer interface</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -347,18 +347,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │ +          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="granger_fmri.html" title="Granger ‘causality’ of fMRI data"
│ │ │ │ +          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -210,17 +210,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Granger_‘causality’_of_fMRI_data
│ │ │ │ │ +Multitaper_coherence_estimation
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Calculation_of_signal-to-noise_and_information
│ │ │ │ │ +Fitting_an_MAR_model:_analyzer_interface
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/ar_est_3vars.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Multitaper coherence estimation" href="multi_taper_coh.html" />
│ │ │ │ -    <link rel="prev" title="Coherency analysis of fMRI data" href="resting_state_fmri.html" />
│ │ │ │ +    <link rel="next" title="Fitting an AR model: algorithm module interface" href="ar_est_1var.html" />
│ │ │ │ +    <link rel="prev" title="Multitaper F-test for harmonic components" href="mtm_harmonic_test.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │ +          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │ +          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -259,19 +259,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="resting_state_fmri.html"
│ │ │ │ -                        title="previous chapter">Coherency analysis of fMRI data</a></p>
│ │ │ │ +  <p class="topless"><a href="mtm_harmonic_test.html"
│ │ │ │ +                        title="previous chapter">Multitaper F-test for harmonic components</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="multi_taper_coh.html"
│ │ │ │ -                        title="next chapter">Multitaper coherence estimation</a></p>
│ │ │ │ +  <p class="topless"><a href="ar_est_1var.html"
│ │ │ │ +                        title="next chapter">Fitting an AR model: algorithm module interface</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -288,18 +288,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │ +          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │ +          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -165,17 +165,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Coherency_analysis_of_fMRI_data
│ │ │ │ │ +Multitaper_F-test_for_harmonic_components
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Multitaper_coherence_estimation
│ │ │ │ │ +Fitting_an_AR_model:_algorithm_module_interface
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/ar_model_fit.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Coherency analysis of fMRI data" href="resting_state_fmri.html" />
│ │ │ │ -    <link rel="prev" title="Event-related fMRI" href="event_related_fmri.html" />
│ │ │ │ +    <link rel="next" title="Filtering and normalizing fMRI data" href="filtering_fmri.html" />
│ │ │ │ +    <link rel="prev" title="Multivariate auto-regressive modeling" href="ar_est_2vars.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │ +          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │ +          <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -193,19 +193,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="event_related_fmri.html"
│ │ │ │ -                        title="previous chapter">Event-related fMRI</a></p>
│ │ │ │ +  <p class="topless"><a href="ar_est_2vars.html"
│ │ │ │ +                        title="previous chapter">Multivariate auto-regressive modeling</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="resting_state_fmri.html"
│ │ │ │ -                        title="next chapter">Coherency analysis of fMRI data</a></p>
│ │ │ │ +  <p class="topless"><a href="filtering_fmri.html"
│ │ │ │ +                        title="next chapter">Filtering and normalizing fMRI data</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -222,18 +222,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │ +          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │ +          <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -106,17 +106,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Event-related_fMRI
│ │ │ │ │ +Multivariate_auto-regressive_modeling
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Coherency_analysis_of_fMRI_data
│ │ │ │ │ +Filtering_and_normalizing_fMRI_data
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/event_related_fmri.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Fitting an MAR model: analyzer interface" href="ar_model_fit.html" />
│ │ │ │ -    <link rel="prev" title="Auditory processing in grasshoppers" href="grasshopper.html" />
│ │ │ │ +    <link rel="next" title="Seed correlation/coherence with fMRI data" href="seed_analysis.html" />
│ │ │ │ +    <link rel="prev" title="Multitaper spectral estimation" href="multi_taper_spectral_estimation.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │ +          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │ +          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -186,19 +186,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="grasshopper.html"
│ │ │ │ -                        title="previous chapter">Auditory processing in grasshoppers</a></p>
│ │ │ │ +  <p class="topless"><a href="multi_taper_spectral_estimation.html"
│ │ │ │ +                        title="previous chapter">Multitaper spectral estimation</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="ar_model_fit.html"
│ │ │ │ -                        title="next chapter">Fitting an MAR model: analyzer interface</a></p>
│ │ │ │ +  <p class="topless"><a href="seed_analysis.html"
│ │ │ │ +                        title="next chapter">Seed correlation/coherence with fMRI data</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -215,18 +215,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │ +          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │ +          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -101,17 +101,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Auditory_processing_in_grasshoppers
│ │ │ │ │ +Multitaper_spectral_estimation
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Fitting_an_MAR_model:_analyzer_interface
│ │ │ │ │ +Seed_correlation/coherence_with_fMRI_data
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/filtering_fmri.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Multitaper method for baseband demodulation" href="mtm_baseband_power.html" />
│ │ │ │ -    <link rel="prev" title="Examples" href="index.html" />
│ │ │ │ +    <link rel="next" title="Multitaper F-test for harmonic components" href="mtm_harmonic_test.html" />
│ │ │ │ +    <link rel="prev" title="Fitting an MAR model: analyzer interface" href="ar_model_fit.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="mtm_baseband_power.html" title="Multitaper method for baseband demodulation"
│ │ │ │ +          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="index.html" title="Examples"
│ │ │ │ +          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -427,19 +427,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="index.html"
│ │ │ │ -                        title="previous chapter">Examples</a></p>
│ │ │ │ +  <p class="topless"><a href="ar_model_fit.html"
│ │ │ │ +                        title="previous chapter">Fitting an MAR model: analyzer interface</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="mtm_baseband_power.html"
│ │ │ │ -                        title="next chapter">Multitaper method for baseband demodulation</a></p>
│ │ │ │ +  <p class="topless"><a href="mtm_harmonic_test.html"
│ │ │ │ +                        title="next chapter">Multitaper F-test for harmonic components</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -456,18 +456,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="mtm_baseband_power.html" title="Multitaper method for baseband demodulation"
│ │ │ │ +          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="index.html" title="Examples"
│ │ │ │ +          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -324,17 +324,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Examples
│ │ │ │ │ +Fitting_an_MAR_model:_analyzer_interface
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Multitaper_method_for_baseband_demodulation
│ │ │ │ │ +Multitaper_F-test_for_harmonic_components
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/granger_fmri.html
│ │ │ │ @@ -11,15 +11,15 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Multivariate auto-regressive modeling" href="ar_est_2vars.html" />
│ │ │ │ +    <link rel="next" title="Multitaper coherence estimation" href="multi_taper_coh.html" />
│ │ │ │      <link rel="prev" title="Multitaper method for baseband demodulation" href="mtm_baseband_power.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │ @@ -32,15 +32,15 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │ +          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="mtm_baseband_power.html" title="Multitaper method for baseband demodulation"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │ @@ -261,16 +261,16 @@
│ │ │ │  </li>
│ │ │ │  </ul>
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │    <p class="topless"><a href="mtm_baseband_power.html"
│ │ │ │                          title="previous chapter">Multitaper method for baseband demodulation</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="ar_est_2vars.html"
│ │ │ │ -                        title="next chapter">Multivariate auto-regressive modeling</a></p>
│ │ │ │ +  <p class="topless"><a href="multi_taper_coh.html"
│ │ │ │ +                        title="next chapter">Multitaper coherence estimation</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -287,15 +287,15 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │ +          <a href="multi_taper_coh.html" title="Multitaper coherence estimation"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="mtm_baseband_power.html" title="Multitaper method for baseband demodulation"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -160,15 +160,15 @@
│ │ │ │ │      * License
│ │ │ │ │  **** Table_of_Contents ****
│ │ │ │ │      * Granger_‘causality’_of_fMRI_data
│ │ │ │ │            o References
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │  Multitaper_method_for_baseband_demodulation
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Multivariate_auto-regressive_modeling
│ │ │ │ │ +Multitaper_coherence_estimation
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/grasshopper.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
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│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Event-related fMRI" href="event_related_fmri.html" />
│ │ │ │ -    <link rel="prev" title="Calculation of signal-to-noise and information" href="snr_example.html" />
│ │ │ │ +    <link rel="next" title="Calculation of signal-to-noise and information" href="snr_example.html" />
│ │ │ │ +    <link rel="prev" title="Fitting an AR model: algorithm module interface" href="ar_est_1var.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
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│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │ +          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │ +          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │               accesskey="P">previous</a> |</li>
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│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -229,19 +229,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="snr_example.html"
│ │ │ │ -                        title="previous chapter">Calculation of signal-to-noise and information</a></p>
│ │ │ │ +  <p class="topless"><a href="ar_est_1var.html"
│ │ │ │ +                        title="previous chapter">Fitting an AR model: algorithm module interface</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="event_related_fmri.html"
│ │ │ │ -                        title="next chapter">Event-related fMRI</a></p>
│ │ │ │ +  <p class="topless"><a href="snr_example.html"
│ │ │ │ +                        title="next chapter">Calculation of signal-to-noise and information</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
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│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -258,18 +258,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │ +          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │ +          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │               >previous</a> |</li>
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│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -137,17 +137,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Calculation_of_signal-to-noise_and_information
│ │ │ │ │ +Fitting_an_AR_model:_algorithm_module_interface
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Event-related_fMRI
│ │ │ │ │ +Calculation_of_signal-to-noise_and_information
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/index.html
│ │ │ │ @@ -11,15 +11,15 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Filtering and normalizing fMRI data" href="filtering_fmri.html" />
│ │ │ │ +    <link rel="next" title="Multitaper spectral estimation" href="multi_taper_spectral_estimation.html" />
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│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │ @@ -32,15 +32,15 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │ +          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../whatsnew/version0.3.html" title="Release notes for nitime version 0.3"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" accesskey="U">Nitime Documentation</a> &#187;</li>
│ │ │ │ @@ -65,36 +65,36 @@
│ │ │ │  <p>If you want to replicate a particular analysis or visualization, simply copy
│ │ │ │  the relevant “.py” script from the source distribution, or download the script
│ │ │ │  using the link at the bottom of each page.</p>
│ │ │ │  <p>Thanks to the developers of <a class="reference external" href="http://www.pymvpa.org">PyMVPA</a> for designing the software which enables us
│ │ │ │  to provide these documented examples!</p>
│ │ │ │  <div class="toctree-wrapper compound">
│ │ │ │  <ul>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="filtering_fmri.html">Filtering and normalizing fMRI data</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="multi_taper_spectral_estimation.html">Multitaper spectral estimation</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="event_related_fmri.html">Event-related fMRI</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="seed_analysis.html">Seed correlation/coherence with fMRI data</a></li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="mtm_baseband_power.html">Multitaper method for baseband demodulation</a><ul>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="mtm_baseband_power.html#test-1">Test 1</a></li>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="mtm_baseband_power.html#test-2">Test 2</a></li>
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="granger_fmri.html">Granger ‘causality’ of fMRI data</a><ul>
│ │ │ │  <li class="toctree-l2"><a class="reference internal" href="granger_fmri.html#references">References</a></li>
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="multi_taper_coh.html">Multitaper coherence estimation</a></li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="ar_est_2vars.html">Multivariate auto-regressive modeling</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="snr_example.html">Calculation of signal-to-noise and information</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="grasshopper.html">Auditory processing in grasshoppers</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="event_related_fmri.html">Event-related fMRI</a></li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="ar_model_fit.html">Fitting an MAR model: analyzer interface</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="resting_state_fmri.html">Coherency analysis of fMRI data</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="filtering_fmri.html">Filtering and normalizing fMRI data</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="mtm_harmonic_test.html">Multitaper F-test for harmonic components</a></li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="ar_est_3vars.html">Multivariate auto-regressive modeling - 3 variables</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="multi_taper_coh.html">Multitaper coherence estimation</a></li>
│ │ │ │  <li class="toctree-l1"><a class="reference internal" href="ar_est_1var.html">Fitting an AR model: algorithm module interface</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="multi_taper_spectral_estimation.html">Multitaper spectral estimation</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="mtm_harmonic_test.html">Multitaper F-test for harmonic components</a></li>
│ │ │ │ -<li class="toctree-l1"><a class="reference internal" href="seed_analysis.html">Seed correlation/coherence with fMRI data</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="grasshopper.html">Auditory processing in grasshoppers</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="snr_example.html">Calculation of signal-to-noise and information</a></li>
│ │ │ │ +<li class="toctree-l1"><a class="reference internal" href="resting_state_fmri.html">Coherency analysis of fMRI data</a></li>
│ │ │ │  </ul>
│ │ │ │  </div>
│ │ │ │  </div>
│ │ │ │  
│ │ │ │  
│ │ │ │              <div class="clearer"></div>
│ │ │ │            </div>
│ │ │ │ @@ -124,16 +124,16 @@
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │    <p class="topless"><a href="../whatsnew/version0.3.html"
│ │ │ │                          title="previous chapter">Release notes for nitime version 0.3</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="filtering_fmri.html"
│ │ │ │ -                        title="next chapter">Filtering and normalizing fMRI data</a></p>
│ │ │ │ +  <p class="topless"><a href="multi_taper_spectral_estimation.html"
│ │ │ │ +                        title="next chapter">Multitaper spectral estimation</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -150,15 +150,15 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │ +          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../whatsnew/version0.3.html" title="Release notes for nitime version 0.3"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -25,45 +25,45 @@
│ │ │ │ │  functioning python scripts, which are available as part of the source
│ │ │ │ │  distribution in the doc/examples folder.
│ │ │ │ │  If you want to replicate a particular analysis or visualization, simply copy
│ │ │ │ │  the relevant “.py” script from the source distribution, or download the
│ │ │ │ │  script using the link at the bottom of each page.
│ │ │ │ │  Thanks to the developers of PyMVPA for designing the software which enables us
│ │ │ │ │  to provide these documented examples!
│ │ │ │ │ -    * Filtering_and_normalizing_fMRI_data
│ │ │ │ │ +    * Multitaper_spectral_estimation
│ │ │ │ │ +    * Event-related_fMRI
│ │ │ │ │ +    * Seed_correlation/coherence_with_fMRI_data
│ │ │ │ │      * Multitaper_method_for_baseband_demodulation
│ │ │ │ │            o Test_1
│ │ │ │ │            o Test_2
│ │ │ │ │      * Granger_‘causality’_of_fMRI_data
│ │ │ │ │            o References
│ │ │ │ │ +    * Multitaper_coherence_estimation
│ │ │ │ │      * Multivariate_auto-regressive_modeling
│ │ │ │ │ -    * Calculation_of_signal-to-noise_and_information
│ │ │ │ │ -    * Auditory_processing_in_grasshoppers
│ │ │ │ │ -    * Event-related_fMRI
│ │ │ │ │      * Fitting_an_MAR_model:_analyzer_interface
│ │ │ │ │ -    * Coherency_analysis_of_fMRI_data
│ │ │ │ │ +    * Filtering_and_normalizing_fMRI_data
│ │ │ │ │ +    * Multitaper_F-test_for_harmonic_components
│ │ │ │ │      * Multivariate_auto-regressive_modeling_-_3_variables
│ │ │ │ │ -    * Multitaper_coherence_estimation
│ │ │ │ │      * Fitting_an_AR_model:_algorithm_module_interface
│ │ │ │ │ -    * Multitaper_spectral_estimation
│ │ │ │ │ -    * Multitaper_F-test_for_harmonic_components
│ │ │ │ │ -    * Seed_correlation/coherence_with_fMRI_data
│ │ │ │ │ +    * Auditory_processing_in_grasshoppers
│ │ │ │ │ +    * Calculation_of_signal-to-noise_and_information
│ │ │ │ │ +    * Coherency_analysis_of_fMRI_data
│ │ │ │ │  *** Site Navigation ***
│ │ │ │ │      * Documentation
│ │ │ │ │      * Development
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
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│ │ │ │ │  *** Previous topic ***
│ │ │ │ │  Release_notes_for_nitime_version_0.3
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Filtering_and_normalizing_fMRI_data
│ │ │ │ │ +Multitaper_spectral_estimation
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
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│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/mtm_baseband_power.html
│ │ │ │ @@ -12,15 +12,15 @@
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │      <link rel="next" title="Granger ‘causality’ of fMRI data" href="granger_fmri.html" />
│ │ │ │ -    <link rel="prev" title="Filtering and normalizing fMRI data" href="filtering_fmri.html" />
│ │ │ │ +    <link rel="prev" title="Seed correlation/coherence with fMRI data" href="seed_analysis.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
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│ │ │ │    </head><body>
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│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -35,15 +35,15 @@
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="granger_fmri.html" title="Granger ‘causality’ of fMRI data"
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│ │ │ │          <li class="right" >
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│ │ │ │  
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│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -232,16 +232,16 @@
│ │ │ │  <li><a class="reference internal" href="#test-1">Test 1</a></li>
│ │ │ │  <li><a class="reference internal" href="#test-2">Test 2</a></li>
│ │ │ │  </ul>
│ │ │ │  </li>
│ │ │ │  </ul>
│ │ │ │  
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│ │ │ │ -  <p class="topless"><a href="filtering_fmri.html"
│ │ │ │ -                        title="previous chapter">Filtering and normalizing fMRI data</a></p>
│ │ │ │ +  <p class="topless"><a href="seed_analysis.html"
│ │ │ │ +                        title="previous chapter">Seed correlation/coherence with fMRI data</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │    <p class="topless"><a href="granger_fmri.html"
│ │ │ │                          title="next chapter">Granger ‘causality’ of fMRI data</a></p>
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│ │ │ │ @@ -264,15 +264,15 @@
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│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
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│ │ │ │            <a href="granger_fmri.html" title="Granger ‘causality’ of fMRI data"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │ +          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -134,15 +134,15 @@
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  **** Table_of_Contents ****
│ │ │ │ │      * Multitaper_method_for_baseband_demodulation
│ │ │ │ │            o Test_1
│ │ │ │ │            o Test_2
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Filtering_and_normalizing_fMRI_data
│ │ │ │ │ +Seed_correlation/coherence_with_fMRI_data
│ │ │ │ │  *** Next topic ***
│ │ │ │ │  Granger_‘causality’_of_fMRI_data
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/mtm_harmonic_test.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Seed correlation/coherence with fMRI data" href="seed_analysis.html" />
│ │ │ │ -    <link rel="prev" title="Multitaper spectral estimation" href="multi_taper_spectral_estimation.html" />
│ │ │ │ +    <link rel="next" title="Multivariate auto-regressive modeling - 3 variables" href="ar_est_3vars.html" />
│ │ │ │ +    <link rel="prev" title="Filtering and normalizing fMRI data" href="filtering_fmri.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │ +          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │ +          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -201,19 +201,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="multi_taper_spectral_estimation.html"
│ │ │ │ -                        title="previous chapter">Multitaper spectral estimation</a></p>
│ │ │ │ +  <p class="topless"><a href="filtering_fmri.html"
│ │ │ │ +                        title="previous chapter">Filtering and normalizing fMRI data</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="seed_analysis.html"
│ │ │ │ -                        title="next chapter">Seed correlation/coherence with fMRI data</a></p>
│ │ │ │ +  <p class="topless"><a href="ar_est_3vars.html"
│ │ │ │ +                        title="next chapter">Multivariate auto-regressive modeling - 3 variables</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -230,18 +230,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="seed_analysis.html" title="Seed correlation/coherence with fMRI data"
│ │ │ │ +          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="multi_taper_spectral_estimation.html" title="Multitaper spectral estimation"
│ │ │ │ +          <a href="filtering_fmri.html" title="Filtering and normalizing fMRI data"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -120,17 +120,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Multitaper_spectral_estimation
│ │ │ │ │ +Filtering_and_normalizing_fMRI_data
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Seed_correlation/coherence_with_fMRI_data
│ │ │ │ │ +Multivariate_auto-regressive_modeling_-_3_variables
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_coh.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Fitting an AR model: algorithm module interface" href="ar_est_1var.html" />
│ │ │ │ -    <link rel="prev" title="Multivariate auto-regressive modeling - 3 variables" href="ar_est_3vars.html" />
│ │ │ │ +    <link rel="next" title="Multivariate auto-regressive modeling" href="ar_est_2vars.html" />
│ │ │ │ +    <link rel="prev" title="Granger ‘causality’ of fMRI data" href="granger_fmri.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │ +          <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │ +          <a href="granger_fmri.html" title="Granger ‘causality’ of fMRI data"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -309,19 +309,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="ar_est_3vars.html"
│ │ │ │ -                        title="previous chapter">Multivariate auto-regressive modeling - 3 variables</a></p>
│ │ │ │ +  <p class="topless"><a href="granger_fmri.html"
│ │ │ │ +                        title="previous chapter">Granger ‘causality’ of fMRI data</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="ar_est_1var.html"
│ │ │ │ -                        title="next chapter">Fitting an AR model: algorithm module interface</a></p>
│ │ │ │ +  <p class="topless"><a href="ar_est_2vars.html"
│ │ │ │ +                        title="next chapter">Multivariate auto-regressive modeling</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -338,18 +338,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │ +          <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │ +          <a href="granger_fmri.html" title="Granger ‘causality’ of fMRI data"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -199,17 +199,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Multivariate_auto-regressive_modeling_-_3_variables
│ │ │ │ │ +Granger_‘causality’_of_fMRI_data
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Fitting_an_AR_model:_algorithm_module_interface
│ │ │ │ │ +Multivariate_auto-regressive_modeling
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/multi_taper_spectral_estimation.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Multitaper F-test for harmonic components" href="mtm_harmonic_test.html" />
│ │ │ │ -    <link rel="prev" title="Fitting an AR model: algorithm module interface" href="ar_est_1var.html" />
│ │ │ │ +    <link rel="next" title="Event-related fMRI" href="event_related_fmri.html" />
│ │ │ │ +    <link rel="prev" title="Examples" href="index.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │ +          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │ +          <a href="index.html" title="Examples"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -400,19 +400,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="ar_est_1var.html"
│ │ │ │ -                        title="previous chapter">Fitting an AR model: algorithm module interface</a></p>
│ │ │ │ +  <p class="topless"><a href="index.html"
│ │ │ │ +                        title="previous chapter">Examples</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="mtm_harmonic_test.html"
│ │ │ │ -                        title="next chapter">Multitaper F-test for harmonic components</a></p>
│ │ │ │ +  <p class="topless"><a href="event_related_fmri.html"
│ │ │ │ +                        title="next chapter">Event-related fMRI</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -429,18 +429,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │ +          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_1var.html" title="Fitting an AR model: algorithm module interface"
│ │ │ │ +          <a href="index.html" title="Examples"
│ │ │ │               >previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -293,17 +293,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Fitting_an_AR_model:_algorithm_module_interface
│ │ │ │ │ +Examples
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Multitaper_F-test_for_harmonic_components
│ │ │ │ │ +Event-related_fMRI
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/resting_state_fmri.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Multivariate auto-regressive modeling - 3 variables" href="ar_est_3vars.html" />
│ │ │ │ -    <link rel="prev" title="Fitting an MAR model: analyzer interface" href="ar_model_fit.html" />
│ │ │ │ +    <link rel="next" title="Discussion" href="../discussion/index.html" />
│ │ │ │ +    <link rel="prev" title="Calculation of signal-to-noise and information" href="snr_example.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
│ │ │ │  
│ │ │ │    </head><body>
│ │ │ │  <div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
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│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_3vars.html" title="Multivariate auto-regressive modeling - 3 variables"
│ │ │ │ +          <a href="../discussion/index.html" title="Discussion"
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│ │ │ │ -          <a href="ar_model_fit.html" title="Fitting an MAR model: analyzer interface"
│ │ │ │ +          <a href="snr_example.html" title="Calculation of signal-to-noise and information"
│ │ │ │               accesskey="P">previous</a> |</li>
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│ │ │ │        </ul>
│ │ │ │ @@ -350,19 +350,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="ar_model_fit.html"
│ │ │ │ -                        title="previous chapter">Fitting an MAR model: analyzer interface</a></p>
│ │ │ │ +  <p class="topless"><a href="snr_example.html"
│ │ │ │ +                        title="previous chapter">Calculation of signal-to-noise and information</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="ar_est_3vars.html"
│ │ │ │ -                        title="next chapter">Multivariate auto-regressive modeling - 3 variables</a></p>
│ │ │ │ +  <p class="topless"><a href="../discussion/index.html"
│ │ │ │ +                        title="next chapter">Discussion</a></p>
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│ │ │ │ @@ -379,18 +379,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
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│ │ │ │ +          <a href="../discussion/index.html" title="Discussion"
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│ │ │ │               >previous</a> |</li>
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│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -248,17 +248,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
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│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Fitting_an_MAR_model:_analyzer_interface
│ │ │ │ │ +Calculation_of_signal-to-noise_and_information
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Multivariate_auto-regressive_modeling_-_3_variables
│ │ │ │ │ +Discussion
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/seed_analysis.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
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│ │ │ │ -    <link rel="prev" title="Multitaper F-test for harmonic components" href="mtm_harmonic_test.html" />
│ │ │ │ +    <link rel="next" title="Multitaper method for baseband demodulation" href="mtm_baseband_power.html" />
│ │ │ │ +    <link rel="prev" title="Event-related fMRI" href="event_related_fmri.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
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│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="../discussion/index.html" title="Discussion"
│ │ │ │ +          <a href="mtm_baseband_power.html" title="Multitaper method for baseband demodulation"
│ │ │ │               accesskey="N">next</a> |</li>
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│ │ │ │ -          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │ +          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │               accesskey="P">previous</a> |</li>
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│ │ │ │        </ul>
│ │ │ │ @@ -264,19 +264,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="mtm_harmonic_test.html"
│ │ │ │ -                        title="previous chapter">Multitaper F-test for harmonic components</a></p>
│ │ │ │ +  <p class="topless"><a href="event_related_fmri.html"
│ │ │ │ +                        title="previous chapter">Event-related fMRI</a></p>
│ │ │ │    <h4>Next topic</h4>
│ │ │ │ -  <p class="topless"><a href="../discussion/index.html"
│ │ │ │ -                        title="next chapter">Discussion</a></p>
│ │ │ │ +  <p class="topless"><a href="mtm_baseband_power.html"
│ │ │ │ +                        title="next chapter">Multitaper method for baseband demodulation</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -293,18 +293,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="../discussion/index.html" title="Discussion"
│ │ │ │ +          <a href="mtm_baseband_power.html" title="Multitaper method for baseband demodulation"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="mtm_harmonic_test.html" title="Multitaper F-test for harmonic components"
│ │ │ │ +          <a href="event_related_fmri.html" title="Event-related fMRI"
│ │ │ │               >previous</a> |</li>
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│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -168,17 +168,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
│ │ │ │ │      * Community_Home
│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
│ │ │ │ │      * License
│ │ │ │ │  *** Previous topic ***
│ │ │ │ │ -Multitaper_F-test_for_harmonic_components
│ │ │ │ │ +Event-related_fMRI
│ │ │ │ │  *** Next topic ***
│ │ │ │ │ -Discussion
│ │ │ │ │ +Multitaper_method_for_baseband_demodulation
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
│ │ │ │ │      * modules |
│ │ │ │ │      * next |
│ │ │ │ │      * previous |
│ │ │ ├── ./usr/share/doc/python-nitime-doc/html/examples/snr_example.html
│ │ │ │ @@ -11,16 +11,16 @@
│ │ │ │      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css" />
│ │ │ │      <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
│ │ │ │      <script src="../_static/jquery.js"></script>
│ │ │ │      <script src="../_static/underscore.js"></script>
│ │ │ │      <script src="../_static/doctools.js"></script>
│ │ │ │      <link rel="index" title="Index" href="../genindex.html" />
│ │ │ │      <link rel="search" title="Search" href="../search.html" />
│ │ │ │ -    <link rel="next" title="Auditory processing in grasshoppers" href="grasshopper.html" />
│ │ │ │ -    <link rel="prev" title="Multivariate auto-regressive modeling" href="ar_est_2vars.html" />
│ │ │ │ +    <link rel="next" title="Coherency analysis of fMRI data" href="resting_state_fmri.html" />
│ │ │ │ +    <link rel="prev" title="Auditory processing in grasshoppers" href="grasshopper.html" />
│ │ │ │    <meta name="keywords" content="nipy, neuroimaging, python, neuroscience, time
│ │ │ │  				 series">
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│ │ │ │    </head><body>
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│ │ │ │   <a href="../index.html">
│ │ │ │    <img src="../_static/nitime-banner-bg.png" alt="NIPY logo"  border="0" />
│ │ │ │ @@ -32,18 +32,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               accesskey="I">index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │ +          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │               accesskey="N">next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │ +          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │               accesskey="P">previous</a> |</li>
│ │ │ │    <li><a href="../index.html">Nitime Home</a> |&nbsp;</li>
│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ @@ -208,19 +208,19 @@
│ │ │ │  	href="http://mail.scipy.org/mailman/listinfo/nipy-devel">Mailing List</a></li>
│ │ │ │      <li><a class="reference external"
│ │ │ │  	href="http://nipy.sourceforge.net/software/license/index.html">License</a></li>
│ │ │ │    </ul>
│ │ │ │  
│ │ │ │  
│ │ │ │    <h4>Previous topic</h4>
│ │ │ │ -  <p class="topless"><a href="ar_est_2vars.html"
│ │ │ │ -                        title="previous chapter">Multivariate auto-regressive modeling</a></p>
│ │ │ │ -  <h4>Next topic</h4>
│ │ │ │    <p class="topless"><a href="grasshopper.html"
│ │ │ │ -                        title="next chapter">Auditory processing in grasshoppers</a></p>
│ │ │ │ +                        title="previous chapter">Auditory processing in grasshoppers</a></p>
│ │ │ │ +  <h4>Next topic</h4>
│ │ │ │ +  <p class="topless"><a href="resting_state_fmri.html"
│ │ │ │ +                        title="next chapter">Coherency analysis of fMRI data</a></p>
│ │ │ │  <div id="searchbox" style="display: none" role="search">
│ │ │ │    <h3 id="searchlabel">Quick search</h3>
│ │ │ │      <div class="searchformwrapper">
│ │ │ │      <form class="search" action="../search.html" method="get">
│ │ │ │        <input type="text" name="q" aria-labelledby="searchlabel" />
│ │ │ │        <input type="submit" value="Go" />
│ │ │ │      </form>
│ │ │ │ @@ -237,18 +237,18 @@
│ │ │ │          <li class="right" style="margin-right: 10px">
│ │ │ │            <a href="../genindex.html" title="General Index"
│ │ │ │               >index</a></li>
│ │ │ │          <li class="right" >
│ │ │ │            <a href="../py-modindex.html" title="Python Module Index"
│ │ │ │               >modules</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │ +          <a href="resting_state_fmri.html" title="Coherency analysis of fMRI data"
│ │ │ │               >next</a> |</li>
│ │ │ │          <li class="right" >
│ │ │ │ -          <a href="ar_est_2vars.html" title="Multivariate auto-regressive modeling"
│ │ │ │ +          <a href="grasshopper.html" title="Auditory processing in grasshoppers"
│ │ │ │               >previous</a> |</li>
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│ │ │ │  
│ │ │ │            <li class="nav-item nav-item-1"><a href="../documentation.html" >Nitime Documentation</a> &#187;</li>
│ │ │ │            <li class="nav-item nav-item-2"><a href="index.html" >Examples</a> &#187;</li>
│ │ │ │          <li class="nav-item nav-item-this"><a href="">Neuroimaging in Python</a></li> 
│ │ │ │        </ul>
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -116,17 +116,17 @@
│ │ │ │ │      * News
│ │ │ │ │  *** NIPY Community ***
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│ │ │ │ │      * NIPY_Projects
│ │ │ │ │      * Mailing_List
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│ │ │ │ │ -Multivariate_auto-regressive_modeling
│ │ │ │ │ -*** Next topic ***
│ │ │ │ │  Auditory_processing_in_grasshoppers
│ │ │ │ │ +*** Next topic ***
│ │ │ │ │ +Coherency_analysis_of_fMRI_data
│ │ │ │ │  **** Quick search ****
│ │ │ │ │  [q                   ] [Go]
│ │ │ │ │  **** Navigation ****
│ │ │ │ │      * index
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