{"diffoscope-json-version": 1, "source1": "/srv/reproducible-results/rbuild-debian/r-b-build.oPuzh5nV/b1/cctbx_2024.10+ds2+~3.22.1+ds1-4_amd64.changes", "source2": "/srv/reproducible-results/rbuild-debian/r-b-build.oPuzh5nV/b2/cctbx_2024.10+ds2+~3.22.1+ds1-4_amd64.changes", "unified_diff": null, "details": [{"source1": "Files", "source2": "Files", "unified_diff": "@@ -1,6 +1,6 @@\n \n  e95e49cf89048f0b23023af056918b78 1160556 devel optional libcctbx-dev_2024.10+ds2+~3.22.1+ds1-4_amd64.deb\n  1a1260ce9ebc0da32519f18b9b9e1dee 10160656 debug optional libcctbx0-dbgsym_2024.10+ds2+~3.22.1+ds1-4_amd64.deb\n  881ef14453133ecc4c0d82c1d920f014 2344564 libs optional libcctbx0_2024.10+ds2+~3.22.1+ds1-4_amd64.deb\n  27786146397f5a2eb53f1cbc5a4d98dc 289846896 debug optional python3-cctbx-dbgsym_2024.10+ds2+~3.22.1+ds1-4_amd64.deb\n- dc43e09322cc04fa99849431190487de 47157860 python optional python3-cctbx_2024.10+ds2+~3.22.1+ds1-4_amd64.deb\n+ bae0f270b2a0586c6e4185701883601d 47160472 python optional python3-cctbx_2024.10+ds2+~3.22.1+ds1-4_amd64.deb\n"}, {"source1": "python3-cctbx_2024.10+ds2+~3.22.1+ds1-4_amd64.deb", "source2": "python3-cctbx_2024.10+ds2+~3.22.1+ds1-4_amd64.deb", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -1,3 +1,3 @@\n -rw-r--r--   0        0        0        4 2024-11-20 14:50:35.000000 debian-binary\n -rw-r--r--   0        0        0   128352 2024-11-20 14:50:35.000000 control.tar.xz\n--rw-r--r--   0        0        0 47029316 2024-11-20 14:50:35.000000 data.tar.xz\n+-rw-r--r--   0        0        0 47031928 2024-11-20 14:50:35.000000 data.tar.xz\n"}, {"source1": "control.tar.xz", "source2": "control.tar.xz", "unified_diff": null, "details": [{"source1": "control.tar", "source2": "control.tar", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "comments": ["Files differ"], "unified_diff": null}]}]}]}, {"source1": "data.tar.xz", "source2": "data.tar.xz", "unified_diff": null, "details": [{"source1": "data.tar", "source2": "data.tar", "unified_diff": null, "details": [{"source1": "./usr/lib/cctbx/python3.12/libtbx_env", "source2": "./usr/lib/cctbx/python3.12/libtbx_env", "unified_diff": "@@ -111,59 +111,59 @@\n p49\n NsVexplicitly_requested_modules\n p50\n c__builtin__\n set\n p51\n ((lp52\n-Vtbxx\n+Vserialtbx\n p53\n-aVannlib_adaptbx\n+aVdxtbx\n p54\n-aVcbflib_adaptbx\n+aVrstbx\n p55\n-aVannlib\n+aVboost_adaptbx\n p56\n-aViotbx\n+aVsmtbx\n p57\n-aVccp4io_adaptbx\n+aVcma_es\n p58\n-aVrstbx\n+aVcrys3d\n p59\n-aVccp4io\n+aVannlib_adaptbx\n p60\n-aVcrys3d\n+aVcctbx\n p61\n-aVdxtbx\n+aVccp4io_adaptbx\n p62\n-aVsmtbx\n+aVcbflib_adaptbx\n p63\n-aVspotfinder\n+aVfable\n p64\n-aVmmtbx\n+aVannlib\n p65\n-aVcma_es\n+aVgltbx\n p66\n-aVfable\n+aVomptbx\n p67\n-aVwxtbx\n+aVmmtbx\n p68\n-aVgltbx\n+aVccp4io\n p69\n-aVserialtbx\n+aVlibtbx\n p70\n-aVomptbx\n-p71\n aVscitbx\n+p71\n+aVspotfinder\n p72\n-aVboost_adaptbx\n+aVtbxx\n p73\n-aVcctbx\n+aViotbx\n p74\n-aVlibtbx\n+aVwxtbx\n p75\n atp76\n Rp77\n sVbuild_options\n p78\n g0\n (clibtbx.env_config\n@@ -642,15 +642,15 @@\n g136\n sg137\n Vannlib\n p271\n sg139\n (lp272\n g271\n-ag54\n+ag60\n asg142\n (lp273\n g0\n (g17\n g2\n Ntp274\n Rp275\n@@ -696,15 +696,15 @@\n g136\n sg137\n Vcbflib\n p291\n sg139\n (lp292\n g291\n-ag55\n+ag63\n asg142\n (lp293\n Nag0\n (g17\n g2\n Ntp294\n Rp295\n@@ -739,15 +739,15 @@\n g136\n sg137\n Vccp4io\n p307\n sg139\n (lp308\n g307\n-ag58\n+ag62\n asg142\n (lp309\n g0\n (g17\n g2\n Ntp310\n Rp311\n@@ -831,18 +831,18 @@\n Rp342\n (dp343\n g134\n g4\n sg135\n g136\n sg137\n-g74\n+g61\n sg139\n (lp344\n-g74\n+g61\n aVcctbx_adaptbx\n p345\n asg142\n (lp346\n g0\n (g17\n g2\n@@ -879,18 +879,18 @@\n Rp360\n (dp361\n g134\n g4\n sg135\n g136\n sg137\n-g61\n+g59\n sg139\n (lp362\n-g61\n+g59\n aVcrys3d_adaptbx\n p363\n asg142\n (lp364\n g0\n (g17\n g2\n@@ -1063,18 +1063,18 @@\n Rp431\n (dp432\n g134\n g4\n sg135\n g136\n sg137\n-g62\n+g54\n sg139\n (lp433\n-g62\n+g54\n aVdxtbx_adaptbx\n p434\n asg142\n (lp435\n g0\n (g17\n g2\n@@ -1108,18 +1108,18 @@\n Rp448\n (dp449\n g134\n g4\n sg135\n g136\n sg137\n-g69\n+g66\n sg139\n (lp450\n-g69\n+g66\n aVgltbx_adaptbx\n p451\n asg142\n (lp452\n g0\n (g17\n g2\n@@ -1151,18 +1151,18 @@\n Rp464\n (dp465\n g134\n g4\n sg135\n g136\n sg137\n-g65\n+g68\n sg139\n (lp466\n-g65\n+g68\n aVmmtbx_adaptbx\n p467\n asg142\n (lp468\n g0\n (g17\n g2\n@@ -1248,18 +1248,18 @@\n Rp501\n (dp502\n g134\n g4\n sg135\n g136\n sg137\n-g59\n+g55\n sg139\n (lp503\n-g59\n+g55\n aVrstbx_adaptbx\n p504\n asg142\n (lp505\n g0\n (g17\n g2\n@@ -1295,18 +1295,18 @@\n Rp517\n (dp518\n g134\n g4\n sg135\n g136\n sg137\n-g70\n+g53\n sg139\n (lp519\n-g70\n+g53\n aVserialtbx_adaptbx\n p520\n asg142\n (lp521\n g0\n (g17\n g2\n@@ -1337,18 +1337,18 @@\n Rp533\n (dp534\n g134\n g4\n sg135\n g136\n sg137\n-g68\n+g75\n sg139\n (lp535\n-g68\n+g75\n aVwxtbx_adaptbx\n p536\n asg142\n (lp537\n g0\n (g17\n g2\n@@ -1391,39 +1391,39 @@\n g217\n sg237\n g235\n sg291\n g289\n sg307\n g305\n-sg74\n+sg61\n g342\n sg327\n g325\n-sg61\n+sg59\n g360\n-sg62\n+sg54\n g431\n sg413\n g411\n sg378\n g376\n sg395\n g393\n-sg69\n+sg66\n g448\n-sg65\n+sg68\n g464\n-sg59\n+sg55\n g501\n sg485\n g483\n-sg70\n+sg53\n g517\n-sg68\n+sg75\n g533\n ssVmodule_dist_paths\n p550\n (dp551\n g138\n g0\n (g17\n@@ -1444,15 +1444,15 @@\n Rp557\n (dp558\n g21\n g23\n sg26\n Vlib/python3/dist-packages/annlib\n p559\n-sbsg54\n+sbsg60\n g0\n (g17\n g2\n Ntp560\n Rp561\n (dp562\n g21\n@@ -1540,15 +1540,15 @@\n Rp589\n (dp590\n g21\n g23\n sg26\n Vlib/python3/dist-packages/fable\n p591\n-sbsg55\n+sbsg63\n g0\n (g17\n g2\n Ntp592\n Rp593\n (dp594\n g21\n@@ -1564,27 +1564,27 @@\n Rp597\n (dp598\n g21\n g23\n sg26\n Vlib/python3/dist-packages/ccp4io\n p599\n-sbsg58\n+sbsg62\n g0\n (g17\n g2\n Ntp600\n Rp601\n (dp602\n g21\n g23\n sg26\n Vlib/python3/dist-packages/ccp4io_adaptbx\n p603\n-sbsg74\n+sbsg61\n g0\n (g17\n g2\n Ntp604\n Rp605\n (dp606\n g21\n@@ -1600,27 +1600,27 @@\n Rp609\n (dp610\n g21\n g23\n sg26\n Vlib/python3/dist-packages/chiltbx\n p611\n-sbsg61\n+sbsg59\n g0\n (g17\n g2\n Ntp612\n Rp613\n (dp614\n g21\n g23\n sg26\n Vlib/python3/dist-packages/crys3d\n p615\n-sbsg62\n+sbsg54\n g0\n (g17\n g2\n Ntp616\n Rp617\n (dp618\n g21\n@@ -1660,39 +1660,39 @@\n Rp629\n (dp630\n g21\n g23\n sg26\n Vlib/python3/dist-packages/smtbx\n p631\n-sbsg69\n+sbsg66\n g0\n (g17\n g2\n Ntp632\n Rp633\n (dp634\n g21\n g23\n sg26\n Vlib/python3/dist-packages/gltbx\n p635\n-sbsg65\n+sbsg68\n g0\n (g17\n g2\n Ntp636\n Rp637\n (dp638\n g21\n g23\n sg26\n Vlib/python3/dist-packages/mmtbx\n p639\n-sbsg59\n+sbsg55\n g0\n (g17\n g2\n Ntp640\n Rp641\n (dp642\n g21\n@@ -1708,27 +1708,27 @@\n Rp645\n (dp646\n g21\n g23\n sg26\n Vlib/python3/dist-packages/spotfinder\n p647\n-sbsg70\n+sbsg53\n g0\n (g17\n g2\n Ntp648\n Rp649\n (dp650\n g21\n g23\n sg26\n Vlib/python3/dist-packages/serialtbx\n p651\n-sbsg68\n+sbsg75\n g0\n (g17\n g2\n Ntp652\n Rp653\n (dp654\n g21\n@@ -1748,19 +1748,19 @@\n ((lp661\n tp662\n Rp663\n sVmissing_optional\n p664\n g51\n ((lp665\n-g477\n-ag249\n-ag426\n+g426\n ag479\n ag478\n+ag477\n+ag249\n atp666\n Rp667\n sVscons_dist_path\n p668\n g0\n (g17\n g2\n@@ -1823,2732 +1823,2732 @@\n g2\n Ntp691\n Rp692\n (dp693\n g21\n g23\n sg26\n-Vbin/libtbx.csh\n+Vbin/libtbx.install\n p694\n sbg0\n (g17\n g2\n Ntp695\n Rp696\n (dp697\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/csh.sh\n+Vlib/python3/dist-packages/libtbx/command_line/install.py\n p698\n sbsg0\n (g17\n g2\n Ntp699\n Rp700\n (dp701\n g21\n g23\n sg26\n-Vbin/libtbx.show_variable_names\n+Vbin/libtbx.list_modules\n p702\n sbg0\n (g17\n g2\n Ntp703\n Rp704\n (dp705\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_variable_names.py\n+Vlib/python3/dist-packages/libtbx/command_line/list_modules.py\n p706\n sbsg0\n (g17\n g2\n Ntp707\n Rp708\n (dp709\n g21\n g23\n sg26\n-Vbin/libtbx.find_clutter\n+Vbin/libtbx.make_sphinx_html\n p710\n sbg0\n (g17\n g2\n Ntp711\n Rp712\n (dp713\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/find_clutter.py\n+Vlib/python3/dist-packages/libtbx/command_line/make_sphinx_html.py\n p714\n sbsg0\n (g17\n g2\n Ntp715\n Rp716\n (dp717\n g21\n g23\n sg26\n-Vbin/libtbx.sge_qstat_counts\n+Vbin/libtbx.find_files\n p718\n sbg0\n (g17\n g2\n Ntp719\n Rp720\n (dp721\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/sge_qstat_counts.py\n+Vlib/python3/dist-packages/libtbx/command_line/find_files.py\n p722\n sbsg0\n (g17\n g2\n Ntp723\n Rp724\n (dp725\n g21\n g23\n sg26\n-Vbin/libtbx.find_under_build\n+Vbin/libtbx.list_source_files_sorted_by_size\n p726\n sbg0\n (g17\n g2\n Ntp727\n Rp728\n (dp729\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/find_under_build.py\n+Vlib/python3/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py\n p730\n sbsg0\n (g17\n g2\n Ntp731\n Rp732\n (dp733\n g21\n g23\n sg26\n-Vbin/libtbx.bibtex\n+Vbin/libtbx.seconds_since_the_epoch\n p734\n sbg0\n (g17\n g2\n Ntp735\n Rp736\n (dp737\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/bibtex.sh\n+Vlib/python3/dist-packages/libtbx/command_line/seconds_since_the_epoch.py\n p738\n sbsg0\n (g17\n g2\n Ntp739\n Rp740\n (dp741\n g21\n g23\n sg26\n-Vbin/libtbx.seconds_since_the_epoch\n+Vbin/libtbx.chunk\n p742\n sbg0\n (g17\n g2\n Ntp743\n Rp744\n (dp745\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/seconds_since_the_epoch.py\n+Vlib/python3/dist-packages/libtbx/command_line/chunk.py\n p746\n sbsg0\n (g17\n g2\n Ntp747\n Rp748\n (dp749\n g21\n g23\n sg26\n-Vbin/libtbx.list_source_files_sorted_by_size\n+Vbin/libtbx.scons\n p750\n sbg0\n (g17\n g2\n Ntp751\n Rp752\n (dp753\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py\n+Vlib/python3/dist-packages/libtbx/command_line/scons.py\n p754\n sbsg0\n (g17\n g2\n Ntp755\n Rp756\n (dp757\n g21\n g23\n sg26\n-Vbin/libtbx.latex\n+Vbin/libtbx.run_pickled_function\n p758\n sbg0\n (g17\n g2\n Ntp759\n Rp760\n (dp761\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/latex.sh\n+Vlib/python3/dist-packages/libtbx/command_line/run_pickled_function.py\n p762\n sbsg0\n (g17\n g2\n Ntp763\n Rp764\n (dp765\n g21\n g23\n sg26\n-Vbin/libtbx.nequal\n+Vbin/libtbx.path_utility\n p766\n sbg0\n (g17\n g2\n Ntp767\n Rp768\n (dp769\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/nequal.py\n+Vlib/python3/dist-packages/libtbx/command_line/path_utility.py\n p770\n sbsg0\n (g17\n g2\n Ntp771\n Rp772\n (dp773\n g21\n g23\n sg26\n-Vbin/libtbx.bundle_as_selfx\n+Vbin/libtbx.bibtex\n p774\n sbg0\n (g17\n g2\n Ntp775\n Rp776\n (dp777\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/bundle_as_selfx.csh\n+Vlib/python3/dist-packages/libtbx/command_line/bibtex.sh\n p778\n sbsg0\n (g17\n g2\n Ntp779\n Rp780\n (dp781\n g21\n g23\n sg26\n-Vbin/libtbx.exec\n+Vbin/libtbx.unpack_in_sources\n p782\n sbg0\n (g17\n g2\n Ntp783\n Rp784\n (dp785\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/exec.sh\n+Vlib/python3/dist-packages/libtbx/command_line/unpack_in_sources.csh\n p786\n sbsg0\n (g17\n g2\n Ntp787\n Rp788\n (dp789\n g21\n g23\n sg26\n-Vbin/libtbx.gdb\n+Vbin/libtbx.sge_available_slots\n p790\n sbg0\n (g17\n g2\n Ntp791\n Rp792\n (dp793\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/gdb.sh\n+Vlib/python3/dist-packages/libtbx/command_line/sge_available_slots.py\n p794\n sbsg0\n (g17\n g2\n Ntp795\n Rp796\n (dp797\n g21\n g23\n sg26\n-Vbin/libtbx.start_binary_bundle\n+Vbin/libtbx.create_cctbx_bundle_for_installer\n p798\n sbg0\n (g17\n g2\n Ntp799\n Rp800\n (dp801\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/start_binary_bundle.py\n+Vlib/python3/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py\n p802\n sbsg0\n (g17\n g2\n Ntp803\n Rp804\n (dp805\n g21\n g23\n sg26\n-Vbin/libtbx.bundle_as_exe\n+Vbin/libtbx.extract_code_from_txt\n p806\n sbg0\n (g17\n g2\n Ntp807\n Rp808\n (dp809\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/bundle_as_exe.py\n+Vlib/python3/dist-packages/libtbx/command_line/extract_code_from_txt.py\n p810\n sbsg0\n (g17\n g2\n Ntp811\n Rp812\n (dp813\n g21\n g23\n sg26\n-Vbin/libtbx.env_run\n+Vbin/libtbx.find_under_build\n p814\n sbg0\n (g17\n g2\n Ntp815\n Rp816\n (dp817\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/env_run.py\n+Vlib/python3/dist-packages/libtbx/command_line/find_under_build.py\n p818\n sbsg0\n (g17\n g2\n Ntp819\n Rp820\n (dp821\n g21\n g23\n sg26\n-Vbin/libtbx.assert_stdin\n+Vbin/libtbx.configure\n p822\n sbg0\n (g17\n g2\n Ntp823\n Rp824\n (dp825\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/assert_stdin.py\n+Vlib/python3/dist-packages/libtbx/command_line/configure.sh\n p826\n sbsg0\n (g17\n g2\n Ntp827\n Rp828\n (dp829\n g21\n g23\n sg26\n-Vbin/libtbx.import_all_ext\n+Vbin/libtbx.show_dist_paths\n p830\n sbg0\n (g17\n g2\n Ntp831\n Rp832\n (dp833\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/import_all_ext.py\n+Vlib/python3/dist-packages/libtbx/command_line/show_dist_paths.py\n p834\n sbsg0\n (g17\n g2\n Ntp835\n Rp836\n (dp837\n g21\n g23\n sg26\n-Vbin/libtbx.find_untested\n+Vbin/libtbx.show_all_on_path\n p838\n sbg0\n (g17\n g2\n Ntp839\n Rp840\n (dp841\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/find_untested.py\n+Vlib/python3/dist-packages/libtbx/command_line/show_all_on_path.py\n p842\n sbsg0\n (g17\n g2\n Ntp843\n Rp844\n (dp845\n g21\n g23\n sg26\n-Vbin/libtbx.unpack_in_sources\n+Vbin/libtbx.any2unix\n p846\n sbg0\n (g17\n g2\n Ntp847\n Rp848\n (dp849\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/unpack_in_sources.csh\n+Vlib/python3/dist-packages/libtbx/command_line/any2unix.py\n p850\n sbsg0\n (g17\n g2\n Ntp851\n Rp852\n (dp853\n g21\n g23\n sg26\n-Vbin/libtbx.show_but_no_repr\n+Vbin/libtbx.clean_clutter\n p854\n sbg0\n (g17\n g2\n Ntp855\n Rp856\n (dp857\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_but_no_repr.py\n+Vlib/python3/dist-packages/libtbx/command_line/clean_clutter.py\n p858\n sbsg0\n (g17\n g2\n Ntp859\n Rp860\n (dp861\n g21\n g23\n sg26\n-Vbin/libtbx.find_in_repositories\n+Vbin/libtbx.create_unzipsfx\n p862\n sbg0\n (g17\n g2\n Ntp863\n Rp864\n (dp865\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/find_in_repositories.py\n+Vlib/python3/dist-packages/libtbx/command_line/create_unzipsfx.py\n p866\n sbsg0\n (g17\n g2\n Ntp867\n Rp868\n (dp869\n g21\n g23\n 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g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/make_sphinx_html.py\n+Vlib/python3/dist-packages/libtbx/command_line/nequal.py\n p1426\n sbsg0\n (g17\n g2\n Ntp1427\n Rp1428\n (dp1429\n g21\n g23\n sg26\n-Vbin/libtbx.epydoc_run\n+Vbin/libtbx.refresh\n p1430\n sbg0\n (g17\n g2\n Ntp1431\n Rp1432\n (dp1433\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/epydoc_run.py\n+Vlib/python3/dist-packages/libtbx/command_line/refresh.sh\n p1434\n sbsg0\n (g17\n g2\n Ntp1435\n Rp1436\n (dp1437\n g21\n g23\n sg26\n-Vbin/libtbx.show_all_on_path\n+Vbin/libtbx.start_binary_bundle\n p1438\n sbg0\n (g17\n g2\n Ntp1439\n Rp1440\n (dp1441\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_all_on_path.py\n+Vlib/python3/dist-packages/libtbx/command_line/start_binary_bundle.py\n p1442\n sbsg0\n (g17\n g2\n Ntp1443\n Rp1444\n (dp1445\n g21\n g23\n sg26\n-Vbin/libtbx.find_files\n+Vbin/libtbx.gdb\n p1446\n sbg0\n (g17\n g2\n Ntp1447\n Rp1448\n (dp1449\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/find_files.py\n+Vlib/python3/dist-packages/libtbx/command_line/gdb.sh\n p1450\n sbsg0\n (g17\n g2\n Ntp1451\n Rp1452\n (dp1453\n g21\n g23\n sg26\n-Vbin/libtbx.scons\n+Vbin/libtbx.prime_factors_of\n p1454\n sbg0\n (g17\n g2\n Ntp1455\n Rp1456\n (dp1457\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/scons.py\n+Vlib/python3/dist-packages/libtbx/command_line/prime_factors_of.py\n p1458\n sbsg0\n (g17\n g2\n Ntp1459\n Rp1460\n (dp1461\n g21\n g23\n sg26\n-Vbin/libtbx.show_build_options\n+Vbin/libtbx.easy_qsub\n p1462\n sbg0\n (g17\n g2\n Ntp1463\n Rp1464\n (dp1465\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_build_options.py\n+Vlib/python3/dist-packages/libtbx/command_line/easy_qsub.py\n p1466\n sbsg0\n (g17\n g2\n Ntp1467\n Rp1468\n (dp1469\n g21\n g23\n sg26\n-Vbin/libtbx.make_dist\n+Vbin/libtbx.parallel_simple\n p1470\n sbg0\n (g17\n g2\n Ntp1471\n Rp1472\n (dp1473\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/make_dist.py\n+Vlib/python3/dist-packages/libtbx/command_line/parallel_simple.py\n p1474\n sbsg0\n (g17\n g2\n Ntp1475\n Rp1476\n (dp1477\n g21\n g23\n sg26\n-Vbin/libtbx.py_compile_all\n+Vbin/libtbx.clear_paths\n p1478\n sbg0\n (g17\n g2\n Ntp1479\n Rp1480\n (dp1481\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/py_compile_all.py\n+Vlib/python3/dist-packages/libtbx/command_line/clear_paths.py\n p1482\n sbsg0\n (g17\n g2\n Ntp1483\n Rp1484\n (dp1485\n g21\n g23\n sg26\n-Vbin/libtbx.create_selfx\n+Vbin/libtbx.create_installer\n p1486\n sbg0\n (g17\n g2\n Ntp1487\n Rp1488\n (dp1489\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/create_selfx.py\n+Vlib/python3/dist-packages/libtbx/command_line/create_installer.py\n p1490\n sbsg0\n (g17\n g2\n Ntp1491\n Rp1492\n (dp1493\n g21\n g23\n sg26\n-Vbin/libtbx.show_bin_path\n+Vbin/libtbx.exec\n p1494\n sbg0\n (g17\n g2\n Ntp1495\n Rp1496\n (dp1497\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_bin_path.py\n+Vlib/python3/dist-packages/libtbx/command_line/exec.sh\n p1498\n sbsg0\n (g17\n g2\n Ntp1499\n Rp1500\n (dp1501\n g21\n g23\n sg26\n-Vbin/libtbx.show_date_and_time\n+Vbin/libtbx.show_bin_path\n p1502\n sbg0\n (g17\n g2\n Ntp1503\n Rp1504\n (dp1505\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_date_and_time.py\n+Vlib/python3/dist-packages/libtbx/command_line/show_bin_path.py\n p1506\n sbsg0\n (g17\n g2\n Ntp1507\n Rp1508\n (dp1509\n g21\n g23\n sg26\n-Vbin/libtbx.show_number_of_processors\n+Vbin/libtbx.show_variable_names\n p1510\n sbg0\n (g17\n g2\n Ntp1511\n Rp1512\n (dp1513\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_number_of_processors.py\n+Vlib/python3/dist-packages/libtbx/command_line/show_variable_names.py\n p1514\n sbsg0\n (g17\n g2\n Ntp1515\n Rp1516\n (dp1517\n g21\n g23\n sg26\n-Vbin/libtbx.chunk\n+Vbin/libtbx.resource_monitor_plot\n p1518\n sbg0\n (g17\n g2\n Ntp1519\n Rp1520\n (dp1521\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/chunk.py\n+Vlib/python3/dist-packages/libtbx/command_line/resource_monitor_plot.py\n p1522\n sbsg0\n (g17\n g2\n Ntp1523\n Rp1524\n (dp1525\n g21\n g23\n sg26\n-Vbin/libtbx.show_numpy_version\n+Vbin/libtbx.show_env\n p1526\n sbg0\n (g17\n g2\n Ntp1527\n Rp1528\n (dp1529\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_numpy_version.py\n+Vlib/python3/dist-packages/libtbx/command_line/show_env.py\n p1530\n sbsg0\n (g17\n g2\n Ntp1531\n Rp1532\n (dp1533\n g21\n g23\n sg26\n-Vbin/libtbx.check_libcpp\n+Vbin/libtbx.show_host_and_user\n p1534\n sbg0\n (g17\n g2\n Ntp1535\n Rp1536\n (dp1537\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/check_libcpp.py\n+Vlib/python3/dist-packages/libtbx/command_line/show_host_and_user.py\n p1538\n sbsg0\n (g17\n g2\n Ntp1539\n Rp1540\n (dp1541\n g21\n g23\n sg26\n-Vbin/libtbx.run_pickled_function\n+Vbin/libtbx.show_pythonpath\n p1542\n sbg0\n (g17\n g2\n Ntp1543\n Rp1544\n (dp1545\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/run_pickled_function.py\n+Vlib/python3/dist-packages/libtbx/command_line/show_pythonpath.py\n p1546\n sbsg0\n (g17\n g2\n Ntp1547\n Rp1548\n (dp1549\n g21\n g23\n sg26\n-Vbin/libtbx.wait_for_file\n+Vbin/libtbx.tcsh\n p1550\n sbg0\n (g17\n g2\n Ntp1551\n Rp1552\n (dp1553\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/wait_for_file.py\n+Vlib/python3/dist-packages/libtbx/command_line/tcsh.sh\n p1554\n sbsg0\n (g17\n g2\n Ntp1555\n Rp1556\n (dp1557\n g21\n g23\n sg26\n-Vbin/libtbx.find_pdb_mmcif_problems\n+Vbin/libtbx.assert_stdin_ends_with\n p1558\n sbg0\n (g17\n g2\n Ntp1559\n Rp1560\n (dp1561\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/find_pdb_mmcif_problems.py\n+Vlib/python3/dist-packages/libtbx/command_line/assert_stdin_ends_with.py\n p1562\n sbsg0\n (g17\n g2\n Ntp1563\n Rp1564\n (dp1565\n g21\n g23\n sg26\n-Vbin/boost_adaptbx.divide_by_zero\n+Vbin/boost_adaptbx.int_overflow\n p1566\n sbg0\n (g17\n g2\n Ntp1567\n Rp1568\n (dp1569\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/divide_by_zero.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/int_overflow.py\n p1570\n sbsg0\n (g17\n g2\n Ntp1571\n Rp1572\n (dp1573\n g21\n g23\n sg26\n-Vbin/boost_adaptbx.show_platform_info\n+Vbin/boost.gcd\n p1574\n sbg0\n (g17\n g2\n Ntp1575\n Rp1576\n (dp1577\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/show_platform_info.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/gcd.py\n p1578\n sbsg0\n (g17\n g2\n Ntp1579\n Rp1580\n (dp1581\n g21\n g23\n sg26\n-Vbin/boost_adaptbx.inexact\n+Vbin/boost_adaptbx.nested_cpp_loops_with_check_signals\n p1582\n sbg0\n (g17\n g2\n Ntp1583\n Rp1584\n (dp1585\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/inexact.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py\n p1586\n sbsg0\n (g17\n g2\n Ntp1587\n Rp1588\n (dp1589\n g21\n g23\n sg26\n-Vbin/boost.gcd\n+Vbin/boost_adaptbx.segmentation_fault\n p1590\n sbg0\n (g17\n g2\n Ntp1591\n Rp1592\n (dp1593\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/gcd.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/segmentation_fault.py\n p1594\n sbsg0\n (g17\n g2\n Ntp1595\n Rp1596\n (dp1597\n g21\n g23\n sg26\n-Vbin/boost.lcm\n+Vbin/boost_adaptbx.show_environ_usage\n p1598\n sbg0\n (g17\n g2\n Ntp1599\n Rp1600\n (dp1601\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/lcm.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/show_environ_usage.py\n p1602\n sbsg0\n (g17\n g2\n Ntp1603\n Rp1604\n (dp1605\n g21\n g23\n sg26\n-Vbin/boost_adaptbx.double_overflow\n+Vbin/boost.lcm\n p1606\n sbg0\n (g17\n g2\n Ntp1607\n Rp1608\n (dp1609\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/double_overflow.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/lcm.py\n p1610\n sbsg0\n (g17\n g2\n Ntp1611\n Rp1612\n (dp1613\n g21\n g23\n sg26\n-Vbin/boost_adaptbx.segmentation_fault\n+Vbin/boost_adaptbx.show_platform_info\n p1614\n sbg0\n (g17\n g2\n Ntp1615\n Rp1616\n (dp1617\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/segmentation_fault.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/show_platform_info.py\n p1618\n sbsg0\n (g17\n g2\n Ntp1619\n Rp1620\n (dp1621\n g21\n g23\n sg26\n-Vbin/boost_adaptbx.nested_cpp_loops_with_check_signals\n+Vbin/boost_adaptbx.inexact\n p1622\n sbg0\n (g17\n g2\n Ntp1623\n Rp1624\n (dp1625\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/inexact.py\n p1626\n sbsg0\n (g17\n g2\n Ntp1627\n Rp1628\n (dp1629\n g21\n g23\n sg26\n-Vbin/boost_adaptbx.show_environ_usage\n+Vbin/boost_adaptbx.double_overflow\n p1630\n sbg0\n (g17\n g2\n Ntp1631\n Rp1632\n (dp1633\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/show_environ_usage.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/double_overflow.py\n p1634\n sbsg0\n (g17\n g2\n Ntp1635\n Rp1636\n (dp1637\n g21\n g23\n sg26\n-Vbin/boost_adaptbx.int_overflow\n+Vbin/boost_adaptbx.divide_by_zero\n p1638\n sbg0\n (g17\n g2\n Ntp1639\n Rp1640\n (dp1641\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/int_overflow.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/divide_by_zero.py\n p1642\n sbsg0\n (g17\n g2\n Ntp1643\n Rp1644\n (dp1645\n g21\n g23\n sg26\n-Vbin/fable.read\n+Vbin/fable.fem_include_search_paths\n p1646\n sbg0\n (g17\n g2\n Ntp1647\n Rp1648\n (dp1649\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/fable/command_line/read.py\n+Vlib/python3/dist-packages/fable/command_line/fem_include_search_paths.py\n p1650\n sbsg0\n (g17\n g2\n Ntp1651\n Rp1652\n (dp1653\n g21\n g23\n sg26\n-Vbin/fable.cout\n+Vbin/fable.split\n p1654\n sbg0\n (g17\n g2\n Ntp1655\n Rp1656\n (dp1657\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/fable/command_line/cout.py\n+Vlib/python3/dist-packages/fable/command_line/split.py\n p1658\n sbsg0\n (g17\n g2\n Ntp1659\n Rp1660\n (dp1661\n g21\n g23\n sg26\n-Vbin/fable.split\n+Vbin/fable.insert_write_at_start_of_each_procedure\n p1662\n sbg0\n (g17\n g2\n Ntp1663\n Rp1664\n (dp1665\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/fable/command_line/split.py\n+Vlib/python3/dist-packages/fable/command_line/insert_write_at_start_of_each_procedure.py\n p1666\n sbsg0\n (g17\n g2\n Ntp1667\n Rp1668\n (dp1669\n g21\n g23\n sg26\n-Vbin/fable.fem_include_search_paths\n+Vbin/fable.cout\n p1670\n sbg0\n (g17\n g2\n Ntp1671\n Rp1672\n (dp1673\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/fable/command_line/fem_include_search_paths.py\n+Vlib/python3/dist-packages/fable/command_line/cout.py\n p1674\n sbsg0\n (g17\n g2\n Ntp1675\n Rp1676\n (dp1677\n g21\n g23\n sg26\n-Vbin/fable.insert_write_at_start_of_each_procedure\n+Vbin/fable.read\n p1678\n sbg0\n (g17\n g2\n Ntp1679\n Rp1680\n (dp1681\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/fable/command_line/insert_write_at_start_of_each_procedure.py\n+Vlib/python3/dist-packages/fable/command_line/read.py\n p1682\n sbsg0\n (g17\n g2\n Ntp1683\n Rp1684\n (dp1685\n@@ -4573,136 +4573,136 @@\n g2\n Ntp1691\n Rp1692\n (dp1693\n g21\n g23\n sg26\n-Vbin/scitbx.show_sizes\n+Vbin/scitbx.histogram\n p1694\n sbg0\n (g17\n g2\n Ntp1695\n Rp1696\n (dp1697\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/scitbx/command_line/show_sizes.py\n+Vlib/python3/dist-packages/scitbx/command_line/histogram.py\n p1698\n sbsg0\n (g17\n g2\n Ntp1699\n Rp1700\n (dp1701\n g21\n g23\n sg26\n-Vbin/scitbx.apply_tapenade_hints\n+Vbin/scitbx.show_exp_times\n p1702\n sbg0\n (g17\n g2\n Ntp1703\n Rp1704\n (dp1705\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/scitbx/command_line/apply_tapenade_hints.py\n+Vlib/python3/dist-packages/scitbx/command_line/show_exp_times.py\n p1706\n sbsg0\n (g17\n g2\n Ntp1707\n Rp1708\n (dp1709\n g21\n g23\n sg26\n-Vbin/scitbx.show_exp_times\n+Vbin/scitbx.unicode_examples\n p1710\n sbg0\n (g17\n g2\n Ntp1711\n Rp1712\n (dp1713\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/scitbx/command_line/show_exp_times.py\n+Vlib/python3/dist-packages/scitbx/command_line/unicode_examples.py\n p1714\n sbsg0\n (g17\n g2\n Ntp1715\n Rp1716\n (dp1717\n g21\n g23\n sg26\n-Vbin/scitbx.generate_error_h\n+Vbin/scitbx.apply_tapenade_hints\n p1718\n sbg0\n (g17\n g2\n Ntp1719\n Rp1720\n (dp1721\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/scitbx/command_line/generate_error_h.py\n+Vlib/python3/dist-packages/scitbx/command_line/apply_tapenade_hints.py\n p1722\n sbsg0\n (g17\n g2\n Ntp1723\n Rp1724\n (dp1725\n g21\n g23\n sg26\n-Vbin/scitbx.histogram\n+Vbin/scitbx.show_sizes\n p1726\n sbg0\n (g17\n g2\n Ntp1727\n Rp1728\n (dp1729\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/scitbx/command_line/histogram.py\n+Vlib/python3/dist-packages/scitbx/command_line/show_sizes.py\n p1730\n sbsg0\n (g17\n g2\n Ntp1731\n Rp1732\n (dp1733\n g21\n g23\n sg26\n-Vbin/scitbx.unicode_examples\n+Vbin/scitbx.generate_error_h\n p1734\n sbg0\n (g17\n g2\n Ntp1735\n Rp1736\n (dp1737\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/scitbx/command_line/unicode_examples.py\n+Vlib/python3/dist-packages/scitbx/command_line/generate_error_h.py\n p1738\n sbsg0\n (g17\n g2\n Ntp1739\n Rp1740\n (dp1741\n@@ -4727,136 +4727,136 @@\n g2\n Ntp1747\n Rp1748\n (dp1749\n g21\n g23\n sg26\n-Vbin/cctbx.cod_select_and_pickle\n+Vbin/samosa.join\n p1750\n sbg0\n (g17\n g2\n Ntp1751\n Rp1752\n (dp1753\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/cod_select_and_pickle.py\n+Vlib/python3/dist-packages/cctbx/command_line/samosa_join.py\n p1754\n sbsg0\n (g17\n g2\n Ntp1755\n Rp1756\n (dp1757\n g21\n g23\n sg26\n-Vbin/cctbx.precession_view\n+Vbin/cctbx.cod_select_and_pickle\n p1758\n sbg0\n (g17\n g2\n Ntp1759\n Rp1760\n (dp1761\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/precession_view.py\n+Vlib/python3/dist-packages/cctbx/command_line/cod_select_and_pickle.py\n p1762\n sbsg0\n (g17\n g2\n Ntp1763\n Rp1764\n (dp1765\n g21\n g23\n sg26\n-Vbin/samosa.join\n+Vbin/cctbx.subgroups\n p1766\n sbg0\n (g17\n g2\n Ntp1767\n Rp1768\n (dp1769\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/samosa_join.py\n+Vlib/python3/dist-packages/cctbx/command_line/subgroups.py\n p1770\n sbsg0\n (g17\n g2\n Ntp1771\n Rp1772\n (dp1773\n g21\n g23\n sg26\n-Vbin/cctbx.version\n+Vbin/phenix.form_factor_query\n p1774\n sbg0\n (g17\n g2\n Ntp1775\n Rp1776\n (dp1777\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/version.py\n+Vlib/python3/dist-packages/cctbx/command_line/form_factor_query.py\n p1778\n sbsg0\n (g17\n g2\n Ntp1779\n Rp1780\n (dp1781\n g21\n g23\n sg26\n-Vbin/cctbx.wavelength_units\n+Vbin/mmtbx.development.qscore\n p1782\n sbg0\n (g17\n g2\n Ntp1783\n Rp1784\n (dp1785\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/wavelength_units.py\n+Vlib/python3/dist-packages/cctbx/command_line/qscore.py\n p1786\n sbsg0\n (g17\n g2\n Ntp1787\n Rp1788\n (dp1789\n g21\n g23\n sg26\n-Vbin/phenix.segment_and_split_map\n+Vbin/cctbx.precession_view\n p1790\n sbg0\n (g17\n g2\n Ntp1791\n Rp1792\n (dp1793\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/segment_and_split_map.py\n+Vlib/python3/dist-packages/cctbx/command_line/precession_view.py\n p1794\n sbsg0\n (g17\n g2\n Ntp1795\n Rp1796\n (dp1797\n@@ -4881,367 +4881,367 @@\n g2\n Ntp1803\n Rp1804\n (dp1805\n g21\n g23\n sg26\n-Vbin/cctbx.subgroups\n+Vbin/samosa.scale\n p1806\n sbg0\n (g17\n g2\n Ntp1807\n Rp1808\n (dp1809\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/subgroups.py\n+Vlib/python3/dist-packages/cctbx/command_line/samosa_scale.py\n p1810\n sbsg0\n (g17\n g2\n Ntp1811\n Rp1812\n (dp1813\n g21\n g23\n sg26\n-Vbin/cctbx.structure_factor_timings\n+Vbin/phenix.auto_sharpen\n p1814\n sbg0\n (g17\n g2\n Ntp1815\n Rp1816\n (dp1817\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/structure_factor_timings.py\n+Vlib/python3/dist-packages/cctbx/command_line/auto_sharpen.py\n p1818\n sbsg0\n (g17\n g2\n Ntp1819\n Rp1820\n (dp1821\n g21\n g23\n sg26\n-Vbin/phenix.find_reticular_twin_laws\n+Vbin/cctbx.structure_factor_timings\n p1822\n sbg0\n (g17\n g2\n Ntp1823\n Rp1824\n (dp1825\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/find_reticular_twin_laws.py\n+Vlib/python3/dist-packages/cctbx/command_line/structure_factor_timings.py\n p1826\n sbsg0\n (g17\n g2\n Ntp1827\n Rp1828\n (dp1829\n g21\n g23\n sg26\n-Vbin/phenix.form_factor_query\n+Vbin/cctbx.version\n p1830\n sbg0\n (g17\n g2\n Ntp1831\n Rp1832\n (dp1833\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/form_factor_query.py\n+Vlib/python3/dist-packages/cctbx/command_line/version.py\n p1834\n sbsg0\n (g17\n g2\n Ntp1835\n Rp1836\n (dp1837\n g21\n g23\n sg26\n-Vbin/phenix.auto_sharpen\n+Vbin/cctbx.eltbx.show_fp_fdp\n p1838\n sbg0\n (g17\n g2\n Ntp1839\n Rp1840\n (dp1841\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/auto_sharpen.py\n+Vlib/python3/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py\n p1842\n sbsg0\n (g17\n g2\n Ntp1843\n Rp1844\n (dp1845\n g21\n g23\n sg26\n-Vbin/phenix.diffuse\n+Vbin/phenix.find_reticular_twin_laws\n p1846\n sbg0\n (g17\n g2\n Ntp1847\n Rp1848\n (dp1849\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/diffuse.py\n+Vlib/python3/dist-packages/cctbx/command_line/find_reticular_twin_laws.py\n p1850\n sbsg0\n (g17\n g2\n Ntp1851\n Rp1852\n (dp1853\n g21\n g23\n sg26\n-Vbin/cctbx.euclidean_model_matching\n+Vbin/cctbx_regression.test_nightly\n p1854\n sbg0\n (g17\n g2\n Ntp1855\n Rp1856\n (dp1857\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/euclidean_model_matching.py\n+Vlib/python3/dist-packages/cctbx/command_line/cctbx_test_nightly.py\n p1858\n sbsg0\n (g17\n g2\n Ntp1859\n Rp1860\n (dp1861\n g21\n g23\n sg26\n-Vbin/samosa.scale\n+Vbin/cctbx.space_group_info\n p1862\n sbg0\n (g17\n g2\n Ntp1863\n Rp1864\n (dp1865\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/samosa_scale.py\n+Vlib/python3/dist-packages/cctbx/command_line/space_group_info.py\n p1866\n sbsg0\n (g17\n g2\n Ntp1867\n Rp1868\n (dp1869\n g21\n g23\n sg26\n-Vbin/cctbx_regression.test_nightly\n+Vbin/cctbx.euclidean_model_matching\n p1870\n sbg0\n (g17\n g2\n Ntp1871\n Rp1872\n (dp1873\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/cctbx_test_nightly.py\n+Vlib/python3/dist-packages/cctbx/command_line/euclidean_model_matching.py\n p1874\n sbsg0\n (g17\n g2\n Ntp1875\n Rp1876\n (dp1877\n g21\n g23\n sg26\n-Vbin/cctbx.space_group_info\n+Vbin/cctbx.wavelength_units\n p1878\n sbg0\n (g17\n g2\n Ntp1879\n Rp1880\n (dp1881\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/space_group_info.py\n+Vlib/python3/dist-packages/cctbx/command_line/wavelength_units.py\n p1882\n sbsg0\n (g17\n g2\n Ntp1883\n Rp1884\n (dp1885\n g21\n g23\n sg26\n-Vbin/cctbx.eltbx.show_fp_fdp\n+Vbin/phenix.diffuse\n p1886\n sbg0\n (g17\n g2\n Ntp1887\n Rp1888\n (dp1889\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py\n+Vlib/python3/dist-packages/cctbx/command_line/diffuse.py\n p1890\n sbsg0\n (g17\n g2\n Ntp1891\n Rp1892\n (dp1893\n g21\n g23\n sg26\n-Vbin/cctbx.web.install\n+Vbin/phenix.segment_and_split_map\n p1894\n sbg0\n (g17\n g2\n Ntp1895\n Rp1896\n (dp1897\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/web.install.csh\n+Vlib/python3/dist-packages/cctbx/command_line/segment_and_split_map.py\n p1898\n sbsg0\n (g17\n g2\n Ntp1899\n Rp1900\n (dp1901\n g21\n g23\n sg26\n-Vbin/mmtbx.development.qscore\n+Vbin/cctbx.web.install\n p1902\n sbg0\n (g17\n g2\n Ntp1903\n Rp1904\n (dp1905\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/qscore.py\n+Vlib/python3/dist-packages/cctbx/command_line/web.install.csh\n p1906\n sbsg0\n (g17\n g2\n Ntp1907\n Rp1908\n (dp1909\n g21\n g23\n sg26\n-Vbin/phenix.data_viewer\n+Vbin/crys3d.model_viewer\n p1910\n sbg0\n (g17\n g2\n Ntp1911\n Rp1912\n (dp1913\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/hklview.py\n+Vlib/python3/dist-packages/crys3d/command_line/model_viewer.py\n p1914\n sbsg0\n (g17\n g2\n Ntp1915\n Rp1916\n (dp1917\n g21\n g23\n sg26\n-Vbin/cctbx.data_viewer\n+Vbin/crys3d.qttbx.view_structure\n p1918\n sbg0\n (g17\n g2\n Ntp1919\n Rp1920\n (dp1921\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/hklview.py\n+Vlib/python3/dist-packages/crys3d/command_line/qttbx.view_structure.py\n p1922\n sbsg0\n (g17\n g2\n Ntp1923\n Rp1924\n (dp1925\n g21\n g23\n sg26\n-Vbin/cctbx.visualize_r_factors\n+Vbin/phenix.HKLviewer\n p1926\n sbg0\n (g17\n g2\n Ntp1927\n Rp1928\n (dp1929\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/visualize_r_factors.py\n+Vlib/python3/dist-packages/crys3d/command_line/HKLviewer.py\n p1930\n sbsg0\n (g17\n g2\n Ntp1931\n Rp1932\n (dp1933\n g21\n g23\n sg26\n-Vbin/phenix.HKLviewer\n+Vbin/cctbx.HKLviewer\n p1934\n sbg0\n (g17\n g2\n Ntp1935\n Rp1936\n (dp1937\n@@ -5255,15 +5255,15 @@\n g2\n Ntp1939\n Rp1940\n (dp1941\n g21\n g23\n sg26\n-Vbin/cctbx.HKLviewer\n+Vbin/phasertng.HKLviewer\n p1942\n sbg0\n (g17\n g2\n Ntp1943\n Rp1944\n (dp1945\n@@ -5277,268 +5277,268 @@\n g2\n Ntp1947\n Rp1948\n (dp1949\n g21\n g23\n sg26\n-Vbin/phasertng.HKLviewer\n+Vbin/cctbx.multiplicity_viewer\n p1950\n sbg0\n (g17\n g2\n Ntp1951\n Rp1952\n (dp1953\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/HKLviewer.py\n+Vlib/python3/dist-packages/crys3d/command_line/multiplicity_viewer.py\n p1954\n sbsg0\n (g17\n g2\n Ntp1955\n Rp1956\n (dp1957\n g21\n g23\n sg26\n-Vbin/cctbx.make_install_HKLviewer_ChimeraX\n+Vbin/phenix.HKLinfo\n p1958\n sbg0\n (g17\n g2\n Ntp1959\n Rp1960\n (dp1961\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/make_install_HKLviewer_ChimeraX.py\n+Vlib/python3/dist-packages/crys3d/command_line/HKLinfo.py\n p1962\n sbsg0\n (g17\n g2\n Ntp1963\n Rp1964\n (dp1965\n g21\n g23\n sg26\n-Vbin/phenix.compare_datasets\n+Vbin/cctbx.HKLinfo\n p1966\n sbg0\n (g17\n g2\n Ntp1967\n Rp1968\n (dp1969\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/compare_datasets.py\n+Vlib/python3/dist-packages/crys3d/command_line/HKLinfo.py\n p1970\n sbsg0\n (g17\n g2\n Ntp1971\n Rp1972\n (dp1973\n g21\n g23\n sg26\n-Vbin/cctbx.multiplicity_viewer\n+Vbin/cctbx.make_install_HKLviewer_ChimeraX\n p1974\n sbg0\n (g17\n g2\n Ntp1975\n Rp1976\n (dp1977\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/multiplicity_viewer.py\n+Vlib/python3/dist-packages/crys3d/command_line/make_install_HKLviewer_ChimeraX.py\n p1978\n sbsg0\n (g17\n g2\n Ntp1979\n Rp1980\n (dp1981\n g21\n g23\n sg26\n-Vbin/crys3d.qttbx.view_structure\n+Vbin/cctbx.visualize_r_factors\n p1982\n sbg0\n (g17\n g2\n Ntp1983\n Rp1984\n (dp1985\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/qttbx.view_structure.py\n+Vlib/python3/dist-packages/crys3d/command_line/visualize_r_factors.py\n p1986\n sbsg0\n (g17\n g2\n Ntp1987\n Rp1988\n (dp1989\n g21\n g23\n sg26\n-Vbin/crys3d.model_viewer\n+Vbin/phenix.data_viewer\n p1990\n sbg0\n (g17\n g2\n Ntp1991\n Rp1992\n (dp1993\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/model_viewer.py\n+Vlib/python3/dist-packages/crys3d/command_line/hklview.py\n p1994\n sbsg0\n (g17\n g2\n Ntp1995\n Rp1996\n (dp1997\n g21\n g23\n sg26\n-Vbin/phenix.HKLinfo\n+Vbin/cctbx.data_viewer\n p1998\n sbg0\n (g17\n g2\n Ntp1999\n Rp2000\n (dp2001\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/HKLinfo.py\n+Vlib/python3/dist-packages/crys3d/command_line/hklview.py\n p2002\n sbsg0\n (g17\n g2\n Ntp2003\n Rp2004\n (dp2005\n g21\n g23\n sg26\n-Vbin/cctbx.HKLinfo\n+Vbin/phenix.compare_datasets\n p2006\n sbg0\n (g17\n g2\n Ntp2007\n Rp2008\n (dp2009\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/HKLinfo.py\n+Vlib/python3/dist-packages/crys3d/command_line/compare_datasets.py\n p2010\n sbsg0\n (g17\n g2\n Ntp2011\n Rp2012\n (dp2013\n g21\n g23\n sg26\n-Vbin/smtbx.masks\n+Vbin/smtbx.absolute_structure\n p2014\n sbg0\n (g17\n g2\n Ntp2015\n Rp2016\n (dp2017\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/smtbx/command_line/masks.py\n+Vlib/python3/dist-packages/smtbx/command_line/absolute_structure.py\n p2018\n sbsg0\n (g17\n g2\n Ntp2019\n Rp2020\n (dp2021\n g21\n g23\n sg26\n-Vbin/smtbx.anom_refine\n+Vbin/smtbx.masks\n p2022\n sbg0\n (g17\n g2\n Ntp2023\n Rp2024\n (dp2025\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/smtbx/command_line/anom_refine.py\n+Vlib/python3/dist-packages/smtbx/command_line/masks.py\n p2026\n sbsg0\n (g17\n g2\n Ntp2027\n Rp2028\n (dp2029\n g21\n g23\n sg26\n-Vbin/smtbx.refine\n+Vbin/smtbx.anom_refine\n p2030\n sbg0\n (g17\n g2\n Ntp2031\n Rp2032\n (dp2033\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/smtbx/command_line/refine.py\n+Vlib/python3/dist-packages/smtbx/command_line/anom_refine.py\n p2034\n sbsg0\n (g17\n g2\n Ntp2035\n Rp2036\n (dp2037\n g21\n g23\n sg26\n-Vbin/smtbx.absolute_structure\n+Vbin/smtbx.refine\n p2038\n sbg0\n (g17\n g2\n Ntp2039\n Rp2040\n (dp2041\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/smtbx/command_line/absolute_structure.py\n+Vlib/python3/dist-packages/smtbx/command_line/refine.py\n p2042\n sbsg0\n (g17\n g2\n Ntp2043\n Rp2044\n (dp2045\n@@ -5563,1764 +5563,1764 @@\n g2\n Ntp2051\n Rp2052\n (dp2053\n g21\n g23\n sg26\n-Vbin/phenix.merging_statistics\n+Vbin/iotbx.pdb.box_around_molecule\n p2054\n sbg0\n (g17\n g2\n Ntp2055\n Rp2056\n (dp2057\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/merging_statistics.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.box_around_molecule.py\n p2058\n sbsg0\n (g17\n g2\n Ntp2059\n Rp2060\n (dp2061\n g21\n g23\n sg26\n-Vbin/iotbx.merging_statistics\n+Vbin/iotbx.r_free_flags_completion_simple\n p2062\n sbg0\n (g17\n g2\n Ntp2063\n Rp2064\n (dp2065\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/merging_statistics.py\n+Vlib/python3/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py\n p2066\n sbsg0\n (g17\n g2\n Ntp2067\n Rp2068\n (dp2069\n g21\n g23\n sg26\n-Vbin/iotbx.cif.as_miller_arrays\n+Vbin/phenix.emma\n p2070\n sbg0\n (g17\n g2\n Ntp2071\n Rp2072\n (dp2073\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cif.as_miller_arrays.py\n+Vlib/python3/dist-packages/iotbx/command_line/emma.py\n p2074\n sbsg0\n (g17\n g2\n Ntp2075\n Rp2076\n (dp2077\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.get_citation\n+Vbin/iotbx.emma\n p2078\n sbg0\n (g17\n g2\n Ntp2079\n Rp2080\n (dp2081\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_get_citation.py\n+Vlib/python3/dist-packages/iotbx/command_line/emma.py\n p2082\n sbsg0\n (g17\n g2\n Ntp2083\n Rp2084\n (dp2085\n g21\n g23\n sg26\n-Vbin/cctbx.patterson_map\n+Vbin/iotbx.cif.as_miller_arrays\n p2086\n sbg0\n (g17\n g2\n Ntp2087\n Rp2088\n (dp2089\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/patterson_map.py\n+Vlib/python3/dist-packages/iotbx/command_line/cif.as_miller_arrays.py\n p2090\n sbsg0\n (g17\n g2\n Ntp2091\n Rp2092\n (dp2093\n g21\n g23\n sg26\n-Vbin/iotbx.xplor.map.show_summary\n+Vbin/iotbx.poscar_as_xray_structure\n p2094\n sbg0\n (g17\n g2\n Ntp2095\n Rp2096\n (dp2097\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/xplor.map.show_summary.py\n+Vlib/python3/dist-packages/iotbx/command_line/poscar_as_xray_structure.py\n p2098\n sbsg0\n (g17\n g2\n Ntp2099\n Rp2100\n (dp2101\n g21\n g23\n sg26\n-Vbin/phenix.emma\n+Vbin/cctbx.show_systematic_absences\n p2102\n sbg0\n (g17\n g2\n Ntp2103\n Rp2104\n (dp2105\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/emma.py\n+Vlib/python3/dist-packages/iotbx/command_line/show_systematic_absences.py\n p2106\n sbsg0\n (g17\n g2\n Ntp2107\n Rp2108\n (dp2109\n g21\n g23\n sg26\n-Vbin/iotbx.emma\n+Vbin/iotbx.dano_as_amplitudes\n p2110\n sbg0\n (g17\n g2\n Ntp2111\n Rp2112\n (dp2113\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/emma.py\n+Vlib/python3/dist-packages/iotbx/command_line/dano_as_amplitudes.py\n p2114\n sbsg0\n (g17\n g2\n Ntp2115\n Rp2116\n (dp2117\n g21\n g23\n sg26\n-Vbin/phenix.resolution\n+Vbin/iotbx.pdb.add_conformations\n p2118\n sbg0\n (g17\n g2\n Ntp2119\n Rp2120\n (dp2121\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/effective_resolution.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_add_conformations.py\n p2122\n sbsg0\n (g17\n g2\n Ntp2123\n Rp2124\n (dp2125\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.superpose_atoms_by_name\n+Vbin/phenix.pdb.biomt_reconstruction\n p2126\n sbg0\n (g17\n g2\n Ntp2127\n Rp2128\n (dp2129\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py\n+Vlib/python3/dist-packages/iotbx/command_line/biomt_reconstruction.py\n p2130\n sbsg0\n (g17\n g2\n Ntp2131\n Rp2132\n (dp2133\n g21\n g23\n sg26\n-Vbin/phenix.reflection_statistics\n+Vbin/iotbx.file_reader\n p2134\n sbg0\n (g17\n g2\n Ntp2135\n Rp2136\n (dp2137\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/reflection_statistics.py\n+Vlib/python3/dist-packages/iotbx/command_line/file_reader.py\n p2138\n sbsg0\n (g17\n g2\n Ntp2139\n Rp2140\n (dp2141\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.insert_scale_records\n+Vbin/phenix.mtz_as_cif\n p2142\n sbg0\n (g17\n g2\n Ntp2143\n Rp2144\n (dp2145\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.insert_scale_records.py\n+Vlib/python3/dist-packages/iotbx/command_line/mtz_as_cif.py\n p2146\n sbsg0\n (g17\n g2\n Ntp2147\n Rp2148\n (dp2149\n g21\n g23\n sg26\n-Vbin/iotbx.cif.as_xray_structure\n+Vbin/iotbx.symmetry_search\n p2150\n sbg0\n (g17\n g2\n Ntp2151\n Rp2152\n (dp2153\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cif.as_xray_structure.py\n+Vlib/python3/dist-packages/iotbx/command_line/symmetry_search.py\n p2154\n sbsg0\n (g17\n g2\n Ntp2155\n Rp2156\n (dp2157\n g21\n g23\n sg26\n-Vbin/phenix.pdb_cif_conversion\n+Vbin/iotbx.get_pubmed_citation\n p2158\n sbg0\n (g17\n g2\n Ntp2159\n Rp2160\n (dp2161\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_cif_conversion.py\n+Vlib/python3/dist-packages/iotbx/command_line/get_pubmed_citation.py\n p2162\n sbsg0\n (g17\n g2\n Ntp2163\n Rp2164\n (dp2165\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.link_as_geometry_restraints_edits\n+Vbin/iotbx.shelx.as_cif\n p2166\n sbg0\n (g17\n g2\n Ntp2167\n Rp2168\n (dp2169\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py\n+Vlib/python3/dist-packages/iotbx/command_line/shelx.as_cif.py\n p2170\n sbsg0\n (g17\n g2\n Ntp2171\n Rp2172\n (dp2173\n g21\n g23\n sg26\n-Vbin/phenix.mtz.dump\n+Vbin/phenix.merging_statistics\n p2174\n sbg0\n (g17\n g2\n Ntp2175\n Rp2176\n (dp2177\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/mtz.dump.py\n+Vlib/python3/dist-packages/iotbx/command_line/merging_statistics.py\n p2178\n sbsg0\n (g17\n g2\n Ntp2179\n Rp2180\n (dp2181\n g21\n g23\n sg26\n-Vbin/iotbx.mtz.dump\n+Vbin/iotbx.merging_statistics\n p2182\n sbg0\n (g17\n g2\n Ntp2183\n Rp2184\n (dp2185\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/mtz.dump.py\n+Vlib/python3/dist-packages/iotbx/command_line/merging_statistics.py\n p2186\n sbsg0\n (g17\n g2\n Ntp2187\n Rp2188\n (dp2189\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.box_around_molecule\n+Vbin/iotbx.pdb.superpose_centers_of_mass\n p2190\n sbg0\n (g17\n g2\n Ntp2191\n Rp2192\n (dp2193\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.box_around_molecule.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py\n p2194\n sbsg0\n (g17\n g2\n Ntp2195\n Rp2196\n (dp2197\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.superpose_centers_of_mass\n+Vbin/phenix.pdb.b_factor_stats\n p2198\n sbg0\n (g17\n g2\n Ntp2199\n Rp2200\n (dp2201\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.b_factor_stats.py\n p2202\n sbsg0\n (g17\n g2\n Ntp2203\n Rp2204\n (dp2205\n g21\n g23\n sg26\n-Vbin/phenix.cns_as_mtz\n+Vbin/phenix.explore_metric_symmetry\n p2206\n sbg0\n (g17\n g2\n Ntp2207\n Rp2208\n (dp2209\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cns_as_mtz.py\n+Vlib/python3/dist-packages/iotbx/command_line/explore_metric_symmetry.py\n p2210\n sbsg0\n (g17\n g2\n Ntp2211\n Rp2212\n (dp2213\n g21\n g23\n sg26\n-Vbin/iotbx.shelx.dump_as_python\n+Vbin/iotbx.unique_with_biomt\n p2214\n sbg0\n (g17\n g2\n Ntp2215\n Rp2216\n (dp2217\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/shelx.dump_as_python.py\n+Vlib/python3/dist-packages/iotbx/command_line/unique_with_biomt.py\n p2218\n sbsg0\n (g17\n g2\n Ntp2219\n Rp2220\n (dp2221\n g21\n g23\n sg26\n-Vbin/iotbx.cns.reflection_reader\n+Vbin/phenix.unique_with_biomt\n p2222\n sbg0\n (g17\n g2\n Ntp2223\n Rp2224\n (dp2225\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cns.reflection_reader.py\n+Vlib/python3/dist-packages/iotbx/command_line/unique_with_biomt.py\n p2226\n sbsg0\n (g17\n g2\n Ntp2227\n Rp2228\n (dp2229\n g21\n g23\n sg26\n-Vbin/phenix.pdb.hierarchy\n+Vbin/iotbx.pdb.as_xray_structure\n p2230\n sbg0\n (g17\n g2\n Ntp2231\n Rp2232\n (dp2233\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.hierarchy.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.as_xray_structure.py\n p2234\n sbsg0\n (g17\n g2\n Ntp2235\n Rp2236\n (dp2237\n g21\n g23\n sg26\n-Vbin/cctbx.show_systematic_absences\n+Vbin/phenix.pdb.mtrix_reconstruction\n p2238\n sbg0\n (g17\n g2\n Ntp2239\n Rp2240\n (dp2241\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/show_systematic_absences.py\n+Vlib/python3/dist-packages/iotbx/command_line/mtrix_reconstruction.py\n p2242\n sbsg0\n (g17\n g2\n Ntp2243\n Rp2244\n (dp2245\n g21\n g23\n sg26\n-Vbin/iotbx.r_free_flags_completion_simple\n+Vbin/iotbx.pdb.superpose_atoms_by_name\n p2246\n sbg0\n (g17\n g2\n Ntp2247\n Rp2248\n (dp2249\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py\n p2250\n sbsg0\n (g17\n g2\n Ntp2251\n Rp2252\n (dp2253\n g21\n g23\n sg26\n-Vbin/iotbx.shelx.as_xray_structure\n+Vbin/iotbx.blast_pdb\n p2254\n sbg0\n (g17\n g2\n Ntp2255\n Rp2256\n (dp2257\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/shelx.as_xray_structure.py\n+Vlib/python3/dist-packages/iotbx/command_line/blast_pdb.py\n p2258\n sbsg0\n (g17\n g2\n Ntp2259\n Rp2260\n (dp2261\n g21\n g23\n sg26\n-Vbin/iotbx.poscar_as_xray_structure\n+Vbin/iotbx.reflection_file_reader\n p2262\n sbg0\n (g17\n g2\n Ntp2263\n Rp2264\n (dp2265\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/poscar_as_xray_structure.py\n+Vlib/python3/dist-packages/iotbx/command_line/reflection_file_reader.py\n p2266\n sbsg0\n (g17\n g2\n Ntp2267\n Rp2268\n (dp2269\n g21\n g23\n sg26\n-Vbin/iotbx.export_scalepack_unmerged\n+Vbin/iotbx.pdb.sort_atoms\n p2270\n sbg0\n (g17\n g2\n Ntp2271\n Rp2272\n (dp2273\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/export_scalepack_unmerged.py\n+Vlib/python3/dist-packages/iotbx/command_line/sort_atoms.py\n p2274\n sbsg0\n (g17\n g2\n Ntp2275\n Rp2276\n (dp2277\n g21\n g23\n sg26\n-Vbin/phenix.reflection_file_converter\n+Vbin/phenix.csv_as_mtz\n p2278\n sbg0\n (g17\n g2\n Ntp2279\n Rp2280\n (dp2281\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/reflection_file_converter.py\n+Vlib/python3/dist-packages/iotbx/command_line/csv_as_mtz.py\n p2282\n sbsg0\n (g17\n g2\n Ntp2283\n Rp2284\n (dp2285\n g21\n g23\n sg26\n-Vbin/iotbx.reflection_file_converter\n+Vbin/iotbx.simple_map_coefficients\n p2286\n sbg0\n (g17\n g2\n Ntp2287\n Rp2288\n (dp2289\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/reflection_file_converter.py\n+Vlib/python3/dist-packages/iotbx/command_line/simple_map_coefficients.py\n p2290\n sbsg0\n (g17\n g2\n Ntp2291\n Rp2292\n (dp2293\n g21\n g23\n sg26\n-Vbin/phenix.csv_as_mtz\n+Vbin/iotbx.dtrek.to_cns\n p2294\n sbg0\n (g17\n g2\n Ntp2295\n Rp2296\n (dp2297\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/csv_as_mtz.py\n+Vlib/python3/dist-packages/iotbx/command_line/dtrek.to_cns.py\n p2298\n sbsg0\n (g17\n g2\n Ntp2299\n Rp2300\n (dp2301\n g21\n g23\n sg26\n-Vbin/iotbx.dano_as_amplitudes\n+Vbin/iotbx.cif.validate\n p2302\n sbg0\n (g17\n g2\n Ntp2303\n Rp2304\n (dp2305\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/dano_as_amplitudes.py\n+Vlib/python3/dist-packages/iotbx/command_line/cif.validate.py\n p2306\n sbsg0\n (g17\n g2\n Ntp2307\n Rp2308\n (dp2309\n g21\n g23\n sg26\n-Vbin/phenix.mtz_as_cif\n+Vbin/phenix.reflection_statistics\n p2310\n sbg0\n (g17\n g2\n Ntp2311\n Rp2312\n (dp2313\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/mtz_as_cif.py\n+Vlib/python3/dist-packages/iotbx/command_line/reflection_statistics.py\n p2314\n sbsg0\n (g17\n g2\n Ntp2315\n Rp2316\n (dp2317\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.join_fragment_files\n+Vbin/iotbx.pdb.show_connectivity\n p2318\n sbg0\n (g17\n g2\n Ntp2319\n Rp2320\n (dp2321\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.join_fragment_files.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_show_connectivity.py\n p2322\n sbsg0\n (g17\n g2\n Ntp2323\n Rp2324\n (dp2325\n g21\n g23\n sg26\n-Vbin/iotbx.phil\n+Vbin/phenix.pdb.hierarchy\n p2326\n sbg0\n (g17\n g2\n Ntp2327\n Rp2328\n (dp2329\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/phil.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.hierarchy.py\n p2330\n sbsg0\n (g17\n g2\n Ntp2331\n Rp2332\n (dp2333\n g21\n g23\n sg26\n-Vbin/labelit.png\n+Vbin/iotbx.pdb.join_fragment_files\n p2334\n sbg0\n (g17\n g2\n Ntp2335\n Rp2336\n (dp2337\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/detector_image_as_png.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.join_fragment_files.py\n p2338\n sbsg0\n (g17\n g2\n Ntp2339\n Rp2340\n (dp2341\n g21\n g23\n sg26\n-Vbin/phenix.cif_as_pdb\n+Vbin/iotbx.pdb_labels_diff\n p2342\n sbg0\n (g17\n g2\n Ntp2343\n Rp2344\n (dp2345\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cif_as_pdb.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_labels_diff.py\n p2346\n sbsg0\n (g17\n g2\n Ntp2347\n Rp2348\n (dp2349\n g21\n g23\n sg26\n-Vbin/iotbx.cif_as_pdb\n+Vbin/phenix.reindex\n p2350\n sbg0\n (g17\n g2\n Ntp2351\n Rp2352\n (dp2353\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cif_as_pdb.py\n+Vlib/python3/dist-packages/iotbx/command_line/reindex.py\n p2354\n sbsg0\n (g17\n g2\n Ntp2355\n Rp2356\n (dp2357\n g21\n g23\n sg26\n-Vbin/iotbx.lattice_symmetry\n+Vbin/iotbx.cns.transfer_crystal_symmetry\n p2358\n sbg0\n (g17\n g2\n Ntp2359\n Rp2360\n (dp2361\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/lattice_symmetry.py\n+Vlib/python3/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py\n p2362\n sbsg0\n (g17\n g2\n Ntp2363\n Rp2364\n (dp2365\n g21\n g23\n sg26\n-Vbin/iotbx.shelx.as_cif\n+Vbin/iotbx.r_free_flags_as_cns\n p2366\n sbg0\n (g17\n g2\n Ntp2367\n Rp2368\n (dp2369\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/shelx.as_cif.py\n+Vlib/python3/dist-packages/iotbx/command_line/r_free_flags_as_cns.py\n p2370\n sbsg0\n (g17\n g2\n Ntp2371\n Rp2372\n (dp2373\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.sort_atoms\n+Vbin/phenix.pdb_as_cif\n p2374\n sbg0\n (g17\n g2\n Ntp2375\n Rp2376\n (dp2377\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/sort_atoms.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_as_cif.py\n p2378\n sbsg0\n (g17\n g2\n Ntp2379\n Rp2380\n (dp2381\n g21\n g23\n sg26\n-Vbin/phenix.pdb.mtrix_reconstruction\n+Vbin/phenix.reflection_file_converter\n p2382\n sbg0\n (g17\n g2\n Ntp2383\n Rp2384\n (dp2385\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/mtrix_reconstruction.py\n+Vlib/python3/dist-packages/iotbx/command_line/reflection_file_converter.py\n p2386\n sbsg0\n (g17\n g2\n Ntp2387\n Rp2388\n (dp2389\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.print_sequence\n+Vbin/iotbx.reflection_file_converter\n p2390\n sbg0\n (g17\n g2\n Ntp2391\n Rp2392\n (dp2393\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.print_sequence.py\n+Vlib/python3/dist-packages/iotbx/command_line/reflection_file_converter.py\n p2394\n sbsg0\n (g17\n g2\n Ntp2395\n Rp2396\n (dp2397\n g21\n g23\n sg26\n-Vbin/phenix.explore_metric_symmetry\n+Vbin/iotbx.pdb_remediator\n p2398\n sbg0\n (g17\n g2\n Ntp2399\n Rp2400\n (dp2401\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/explore_metric_symmetry.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_remediator.py\n p2402\n sbsg0\n (g17\n g2\n Ntp2403\n Rp2404\n (dp2405\n g21\n g23\n sg26\n-Vbin/iotbx.reflection_file_reader\n+Vbin/iotbx.xplor.map.show_summary\n p2406\n sbg0\n (g17\n g2\n Ntp2407\n Rp2408\n (dp2409\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/reflection_file_reader.py\n+Vlib/python3/dist-packages/iotbx/command_line/xplor.map.show_summary.py\n p2410\n sbsg0\n (g17\n g2\n Ntp2411\n Rp2412\n (dp2413\n g21\n g23\n sg26\n-Vbin/iotbx.split_data_cif\n+Vbin/iotbx.pdb.insert_scale_records\n p2414\n sbg0\n (g17\n g2\n Ntp2415\n Rp2416\n (dp2417\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/split_data_cif.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.insert_scale_records.py\n p2418\n sbsg0\n (g17\n g2\n Ntp2419\n Rp2420\n (dp2421\n g21\n g23\n sg26\n-Vbin/iotbx.cbf_read\n+Vbin/phenix.resolution\n p2422\n sbg0\n (g17\n g2\n Ntp2423\n Rp2424\n (dp2425\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cbf_read.py\n+Vlib/python3/dist-packages/iotbx/command_line/effective_resolution.py\n p2426\n sbsg0\n (g17\n g2\n Ntp2427\n Rp2428\n (dp2429\n g21\n g23\n sg26\n-Vbin/phenix.french_wilson\n+Vbin/iotbx.cns.reflection_reader\n p2430\n sbg0\n (g17\n g2\n Ntp2431\n Rp2432\n (dp2433\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/french_wilson.py\n+Vlib/python3/dist-packages/iotbx/command_line/cns.reflection_reader.py\n p2434\n sbsg0\n (g17\n g2\n Ntp2435\n Rp2436\n (dp2437\n g21\n g23\n sg26\n-Vbin/iotbx.french_wilson\n+Vbin/iotbx.cbf_read\n p2438\n sbg0\n (g17\n g2\n Ntp2439\n Rp2440\n (dp2441\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/french_wilson.py\n+Vlib/python3/dist-packages/iotbx/command_line/cbf_read.py\n p2442\n sbsg0\n (g17\n g2\n Ntp2443\n Rp2444\n (dp2445\n g21\n g23\n sg26\n-Vbin/iotbx.r_free_flags_as_cns\n+Vbin/cctbx.patterson_map\n p2446\n sbg0\n (g17\n g2\n Ntp2447\n Rp2448\n (dp2449\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/r_free_flags_as_cns.py\n+Vlib/python3/dist-packages/iotbx/command_line/patterson_map.py\n p2450\n sbsg0\n (g17\n g2\n Ntp2451\n Rp2452\n (dp2453\n g21\n g23\n sg26\n-Vbin/phenix.reindex\n+Vbin/iotbx.phil\n p2454\n sbg0\n (g17\n g2\n Ntp2455\n Rp2456\n (dp2457\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/reindex.py\n+Vlib/python3/dist-packages/iotbx/command_line/phil.py\n p2458\n sbsg0\n (g17\n g2\n Ntp2459\n Rp2460\n (dp2461\n g21\n g23\n sg26\n-Vbin/iotbx.pdb_as_fasta\n+Vbin/iotbx.pdb_labels_comparison\n p2462\n sbg0\n (g17\n g2\n Ntp2463\n Rp2464\n (dp2465\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_as_fasta.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_labels_comparison.py\n p2466\n sbsg0\n (g17\n g2\n Ntp2467\n Rp2468\n (dp2469\n g21\n g23\n sg26\n-Vbin/phenix.pdb.b_factor_stats\n+Vbin/iotbx.show_distances\n p2470\n sbg0\n (g17\n g2\n Ntp2471\n Rp2472\n (dp2473\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.b_factor_stats.py\n+Vlib/python3/dist-packages/iotbx/command_line/show_distances.py\n p2474\n sbsg0\n (g17\n g2\n Ntp2475\n Rp2476\n (dp2477\n g21\n g23\n sg26\n-Vbin/iotbx.r_free_flags_accumulation\n+Vbin/phenix.cns_as_mtz\n p2478\n sbg0\n (g17\n g2\n Ntp2479\n Rp2480\n (dp2481\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/r_free_flags_accumulation.py\n+Vlib/python3/dist-packages/iotbx/command_line/cns_as_mtz.py\n p2482\n sbsg0\n (g17\n g2\n Ntp2483\n Rp2484\n (dp2485\n g21\n g23\n sg26\n-Vbin/iotbx.simple_map_coefficients\n+Vbin/phenix.pdb_cif_conversion\n p2486\n sbg0\n (g17\n g2\n Ntp2487\n Rp2488\n (dp2489\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/simple_map_coefficients.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_cif_conversion.py\n p2490\n sbsg0\n (g17\n g2\n Ntp2491\n Rp2492\n (dp2493\n g21\n g23\n sg26\n-Vbin/iotbx.cif.validate\n+Vbin/labelit.png\n p2494\n sbg0\n (g17\n g2\n Ntp2495\n Rp2496\n (dp2497\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cif.validate.py\n+Vlib/python3/dist-packages/iotbx/command_line/detector_image_as_png.py\n p2498\n sbsg0\n (g17\n g2\n Ntp2499\n Rp2500\n (dp2501\n g21\n g23\n sg26\n-Vbin/phenix.pdb.biomt_reconstruction\n+Vbin/iotbx.cif.as_xray_structure\n p2502\n sbg0\n (g17\n g2\n Ntp2503\n Rp2504\n (dp2505\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/biomt_reconstruction.py\n+Vlib/python3/dist-packages/iotbx/command_line/cif.as_xray_structure.py\n p2506\n sbsg0\n (g17\n g2\n Ntp2507\n Rp2508\n (dp2509\n g21\n g23\n sg26\n-Vbin/iotbx.dtrek.to_cns\n+Vbin/iotbx.pdb.split_models\n p2510\n sbg0\n (g17\n g2\n Ntp2511\n Rp2512\n (dp2513\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/dtrek.to_cns.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_split_models.py\n p2514\n sbsg0\n (g17\n g2\n Ntp2515\n Rp2516\n (dp2517\n g21\n g23\n sg26\n-Vbin/iotbx.blast_pdb\n+Vbin/phenix.cif_as_pdb\n p2518\n sbg0\n (g17\n g2\n Ntp2519\n Rp2520\n (dp2521\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/blast_pdb.py\n+Vlib/python3/dist-packages/iotbx/command_line/cif_as_pdb.py\n p2522\n sbsg0\n (g17\n g2\n Ntp2523\n Rp2524\n (dp2525\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.add_conformations\n+Vbin/iotbx.cif_as_pdb\n p2526\n sbg0\n (g17\n g2\n Ntp2527\n Rp2528\n (dp2529\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_add_conformations.py\n+Vlib/python3/dist-packages/iotbx/command_line/cif_as_pdb.py\n p2530\n sbsg0\n (g17\n g2\n Ntp2531\n Rp2532\n (dp2533\n g21\n g23\n sg26\n-Vbin/iotbx.crystal_symmetry_from_any\n+Vbin/iotbx.build_phil_cache\n p2534\n sbg0\n (g17\n g2\n Ntp2535\n Rp2536\n (dp2537\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py\n+Vlib/python3/dist-packages/iotbx/command_line/build_phil_cache.py\n p2538\n sbsg0\n (g17\n g2\n Ntp2539\n Rp2540\n (dp2541\n g21\n g23\n sg26\n-Vbin/iotbx.distance_least_squares\n+Vbin/iotbx.lattice_symmetry\n p2542\n sbg0\n (g17\n g2\n Ntp2543\n Rp2544\n (dp2545\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/distance_least_squares.py\n+Vlib/python3/dist-packages/iotbx/command_line/lattice_symmetry.py\n p2546\n sbsg0\n (g17\n g2\n Ntp2547\n Rp2548\n (dp2549\n g21\n g23\n sg26\n-Vbin/iotbx.cns.transfer_crystal_symmetry\n+Vbin/iotbx.crystal_symmetry_from_any\n p2550\n sbg0\n (g17\n g2\n Ntp2551\n Rp2552\n (dp2553\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py\n+Vlib/python3/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py\n p2554\n sbsg0\n (g17\n g2\n Ntp2555\n Rp2556\n (dp2557\n g21\n g23\n sg26\n-Vbin/iotbx.pdb_remediator\n+Vbin/phenix.french_wilson\n p2558\n sbg0\n (g17\n g2\n Ntp2559\n Rp2560\n (dp2561\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_remediator.py\n+Vlib/python3/dist-packages/iotbx/command_line/french_wilson.py\n p2562\n sbsg0\n (g17\n g2\n Ntp2563\n Rp2564\n (dp2565\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.split_models\n+Vbin/iotbx.french_wilson\n p2566\n sbg0\n (g17\n g2\n Ntp2567\n Rp2568\n (dp2569\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_split_models.py\n+Vlib/python3/dist-packages/iotbx/command_line/french_wilson.py\n p2570\n sbsg0\n (g17\n g2\n Ntp2571\n Rp2572\n (dp2573\n g21\n g23\n sg26\n-Vbin/iotbx.pdb_labels_diff\n+Vbin/iotbx.shelx.as_xray_structure\n p2574\n sbg0\n (g17\n g2\n Ntp2575\n Rp2576\n (dp2577\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_labels_diff.py\n+Vlib/python3/dist-packages/iotbx/command_line/shelx.as_xray_structure.py\n p2578\n sbsg0\n (g17\n g2\n Ntp2579\n Rp2580\n (dp2581\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.show_connectivity\n+Vbin/iotbx.cns.sdb_reader\n p2582\n sbg0\n (g17\n g2\n Ntp2583\n Rp2584\n (dp2585\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_show_connectivity.py\n+Vlib/python3/dist-packages/iotbx/command_line/cns.sdb_reader.py\n p2586\n sbsg0\n (g17\n g2\n Ntp2587\n Rp2588\n (dp2589\n g21\n g23\n sg26\n-Vbin/iotbx.get_pubmed_citation\n+Vbin/iotbx.pdb.print_sequence\n p2590\n sbg0\n (g17\n g2\n Ntp2591\n Rp2592\n (dp2593\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/get_pubmed_citation.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.print_sequence.py\n p2594\n sbsg0\n (g17\n g2\n Ntp2595\n Rp2596\n (dp2597\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.flip_symmetric_amino_acids\n+Vbin/phenix.mtz.dump\n p2598\n sbg0\n (g17\n g2\n Ntp2599\n Rp2600\n (dp2601\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py\n+Vlib/python3/dist-packages/iotbx/command_line/mtz.dump.py\n p2602\n sbsg0\n (g17\n g2\n Ntp2603\n Rp2604\n (dp2605\n g21\n g23\n sg26\n-Vbin/iotbx.pdb_labels_comparison\n+Vbin/iotbx.mtz.dump\n p2606\n sbg0\n (g17\n g2\n Ntp2607\n Rp2608\n (dp2609\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_labels_comparison.py\n+Vlib/python3/dist-packages/iotbx/command_line/mtz.dump.py\n p2610\n sbsg0\n (g17\n g2\n Ntp2611\n Rp2612\n (dp2613\n g21\n g23\n sg26\n-Vbin/iotbx.show_distances\n+Vbin/iotbx.pdb.flip_symmetric_amino_acids\n p2614\n sbg0\n (g17\n g2\n Ntp2615\n Rp2616\n (dp2617\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/show_distances.py\n+Vlib/python3/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py\n p2618\n sbsg0\n (g17\n g2\n Ntp2619\n Rp2620\n (dp2621\n g21\n g23\n sg26\n-Vbin/iotbx.unique_with_biomt\n+Vbin/iotbx.pdb.get_citation\n p2622\n sbg0\n (g17\n g2\n Ntp2623\n Rp2624\n (dp2625\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/unique_with_biomt.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_get_citation.py\n p2626\n sbsg0\n (g17\n g2\n Ntp2627\n Rp2628\n (dp2629\n g21\n g23\n sg26\n-Vbin/phenix.unique_with_biomt\n+Vbin/iotbx.pdb_as_fasta\n p2630\n sbg0\n (g17\n g2\n Ntp2631\n Rp2632\n (dp2633\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/unique_with_biomt.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_as_fasta.py\n p2634\n sbsg0\n (g17\n g2\n Ntp2635\n Rp2636\n (dp2637\n g21\n g23\n sg26\n-Vbin/iotbx.file_reader\n+Vbin/iotbx.split_data_cif\n p2638\n sbg0\n (g17\n g2\n Ntp2639\n Rp2640\n (dp2641\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/file_reader.py\n+Vlib/python3/dist-packages/iotbx/command_line/split_data_cif.py\n p2642\n sbsg0\n (g17\n g2\n Ntp2643\n Rp2644\n (dp2645\n g21\n g23\n sg26\n-Vbin/iotbx.symmetry_search\n+Vbin/iotbx.r_free_flags_accumulation\n p2646\n sbg0\n (g17\n g2\n Ntp2647\n Rp2648\n (dp2649\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/symmetry_search.py\n+Vlib/python3/dist-packages/iotbx/command_line/r_free_flags_accumulation.py\n p2650\n sbsg0\n (g17\n g2\n Ntp2651\n Rp2652\n (dp2653\n g21\n g23\n sg26\n-Vbin/phenix.pdb_as_cif\n+Vbin/iotbx.pdb.link_as_geometry_restraints_edits\n p2654\n sbg0\n (g17\n g2\n Ntp2655\n Rp2656\n (dp2657\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_as_cif.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py\n p2658\n sbsg0\n (g17\n g2\n Ntp2659\n Rp2660\n (dp2661\n g21\n g23\n sg26\n-Vbin/iotbx.reflection_file_editor\n+Vbin/iotbx.export_scalepack_unmerged\n p2662\n sbg0\n (g17\n g2\n Ntp2663\n Rp2664\n (dp2665\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/reflection_file_editor.py\n+Vlib/python3/dist-packages/iotbx/command_line/export_scalepack_unmerged.py\n p2666\n sbsg0\n (g17\n g2\n Ntp2667\n Rp2668\n (dp2669\n g21\n g23\n sg26\n-Vbin/iotbx.build_phil_cache\n+Vbin/iotbx.shelx.dump_as_python\n p2670\n sbg0\n (g17\n g2\n Ntp2671\n Rp2672\n (dp2673\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/build_phil_cache.py\n+Vlib/python3/dist-packages/iotbx/command_line/shelx.dump_as_python.py\n p2674\n sbsg0\n (g17\n g2\n Ntp2675\n Rp2676\n (dp2677\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.as_xray_structure\n+Vbin/iotbx.reflection_file_editor\n p2678\n sbg0\n (g17\n g2\n Ntp2679\n Rp2680\n (dp2681\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.as_xray_structure.py\n+Vlib/python3/dist-packages/iotbx/command_line/reflection_file_editor.py\n p2682\n sbsg0\n (g17\n g2\n Ntp2683\n Rp2684\n (dp2685\n g21\n g23\n sg26\n-Vbin/iotbx.cns.sdb_reader\n+Vbin/iotbx.distance_least_squares\n p2686\n sbg0\n (g17\n g2\n Ntp2687\n Rp2688\n (dp2689\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cns.sdb_reader.py\n+Vlib/python3/dist-packages/iotbx/command_line/distance_least_squares.py\n p2690\n sbsg0\n (g17\n g2\n Ntp2691\n Rp2692\n (dp2693\n@@ -7345,3480 +7345,3480 @@\n g2\n Ntp2699\n Rp2700\n (dp2701\n g21\n g23\n sg26\n-Vbin/phenix.fem\n+Vbin/phenix.maximum_entropy_map\n p2702\n sbg0\n (g17\n g2\n Ntp2703\n Rp2704\n (dp2705\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/development_fem.py\n+Vlib/python3/dist-packages/mmtbx/command_line/maximum_entropy_map.py\n p2706\n sbsg0\n (g17\n g2\n Ntp2707\n Rp2708\n (dp2709\n g21\n g23\n sg26\n-Vbin/phenix.feature_enhanced_map\n+Vbin/phenix.rank_scale_map\n p2710\n sbg0\n (g17\n g2\n Ntp2711\n Rp2712\n (dp2713\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/development_fem.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rank_scale_map.py\n p2714\n sbsg0\n (g17\n g2\n Ntp2715\n Rp2716\n (dp2717\n g21\n g23\n sg26\n-Vbin/mmtbx.distance_difference\n+Vbin/phenix.mp_validate_bonds\n p2718\n sbg0\n (g17\n g2\n Ntp2719\n Rp2720\n (dp2721\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/distance_difference.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mp_validate_bonds.py\n p2722\n sbsg0\n (g17\n g2\n Ntp2723\n Rp2724\n (dp2725\n g21\n g23\n sg26\n-Vbin/phenix.tls_analysis\n+Vbin/molprobity.mp_validate_bonds\n p2726\n sbg0\n (g17\n g2\n Ntp2727\n Rp2728\n (dp2729\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/tls_analysis.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mp_validate_bonds.py\n p2730\n sbsg0\n (g17\n g2\n Ntp2731\n Rp2732\n (dp2733\n g21\n g23\n sg26\n-Vbin/phenix.find_peaks_holes\n+Vbin/mmtbx.development.electrons\n p2734\n sbg0\n (g17\n g2\n Ntp2735\n Rp2736\n (dp2737\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/find_peaks_holes.py\n+Vlib/python3/dist-packages/mmtbx/command_line/electrons.py\n p2738\n sbsg0\n (g17\n g2\n Ntp2739\n Rp2740\n (dp2741\n g21\n g23\n sg26\n-Vbin/mmtbx.find_peaks_holes\n+Vbin/phenix.fobs_minus_fobs_map\n p2742\n sbg0\n (g17\n g2\n Ntp2743\n Rp2744\n (dp2745\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/find_peaks_holes.py\n+Vlib/python3/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py\n p2746\n sbsg0\n (g17\n g2\n Ntp2747\n Rp2748\n (dp2749\n g21\n g23\n sg26\n-Vbin/phenix.fetch_pdb\n+Vbin/phenix.fab_elbow_angle\n p2750\n sbg0\n (g17\n g2\n Ntp2751\n Rp2752\n (dp2753\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/fetch_pdb.py\n+Vlib/python3/dist-packages/mmtbx/command_line/fab_elbow_angle.py\n p2754\n sbsg0\n (g17\n g2\n Ntp2755\n Rp2756\n (dp2757\n g21\n g23\n sg26\n-Vbin/iotbx.fetch_pdb\n+Vbin/phenix.fake_f_obs\n p2758\n sbg0\n (g17\n g2\n Ntp2759\n Rp2760\n (dp2761\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/fetch_pdb.py\n+Vlib/python3/dist-packages/mmtbx/command_line/fake_f_obs.py\n p2762\n sbsg0\n (g17\n g2\n Ntp2763\n Rp2764\n (dp2765\n g21\n g23\n sg26\n-Vbin/phenix.reciprocal_space_arrays\n+Vbin/phenix.rna_validate_suites\n p2766\n sbg0\n (g17\n g2\n Ntp2767\n Rp2768\n (dp2769\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_suites.py\n p2770\n sbsg0\n (g17\n g2\n Ntp2771\n Rp2772\n (dp2773\n g21\n g23\n sg26\n-Vbin/mmtbx.matthews\n+Vbin/molprobity.rna_validate_suites\n p2774\n sbg0\n (g17\n g2\n Ntp2775\n Rp2776\n (dp2777\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/matthews.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_suites.py\n p2778\n sbsg0\n (g17\n g2\n Ntp2779\n Rp2780\n (dp2781\n g21\n g23\n sg26\n-Vbin/mmtbx.massage_data\n+Vbin/phenix.model_idealization\n p2782\n sbg0\n (g17\n g2\n Ntp2783\n Rp2784\n (dp2785\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/massage_data.py\n+Vlib/python3/dist-packages/mmtbx/command_line/model_idealization.py\n p2786\n sbsg0\n (g17\n g2\n Ntp2787\n Rp2788\n (dp2789\n g21\n g23\n sg26\n-Vbin/phenix.mtz2map\n+Vbin/phenix.cif_as_mtz\n p2790\n sbg0\n (g17\n g2\n Ntp2791\n Rp2792\n (dp2793\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mtz2map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cif_as_mtz.py\n p2794\n sbsg0\n (g17\n g2\n Ntp2795\n Rp2796\n (dp2797\n g21\n g23\n sg26\n-Vbin/phenix.fft\n+Vbin/iotbx.cif_as_mtz\n p2798\n sbg0\n (g17\n g2\n Ntp2799\n Rp2800\n (dp2801\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mtz2map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cif_as_mtz.py\n p2802\n sbsg0\n (g17\n g2\n Ntp2803\n Rp2804\n (dp2805\n g21\n g23\n sg26\n-Vbin/mmtbx.fft\n+Vbin/mmtbx.hydrogenate\n p2806\n sbg0\n (g17\n g2\n Ntp2807\n Rp2808\n (dp2809\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mtz2map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/hydrogenate.py\n p2810\n sbsg0\n (g17\n g2\n Ntp2811\n Rp2812\n (dp2813\n g21\n g23\n sg26\n-Vbin/phenix.grow_density\n+Vbin/mmtbx.mp_geo\n p2814\n sbg0\n (g17\n g2\n Ntp2815\n Rp2816\n (dp2817\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/grow_density.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mp_geo.py\n p2818\n sbsg0\n (g17\n g2\n Ntp2819\n Rp2820\n (dp2821\n g21\n g23\n sg26\n-Vbin/phenix.secondary_structure_restraints\n+Vbin/mmtbx.verify_mon_lib_data\n p2822\n sbg0\n (g17\n g2\n Ntp2823\n Rp2824\n (dp2825\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/secondary_structure_restraints.py\n+Vlib/python3/dist-packages/mmtbx/command_line/verify_mon_lib_data.py\n p2826\n sbsg0\n (g17\n g2\n Ntp2827\n Rp2828\n (dp2829\n g21\n g23\n sg26\n-Vbin/phenix.comparama\n+Vbin/phenix.pdb_atom_selection\n p2830\n sbg0\n (g17\n g2\n Ntp2831\n Rp2832\n (dp2833\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/comparama.py\n+Vlib/python3/dist-packages/mmtbx/command_line/pdb_atom_selection.py\n p2834\n sbsg0\n (g17\n g2\n Ntp2835\n Rp2836\n (dp2837\n g21\n g23\n sg26\n-Vbin/phenix.clashscore\n+Vbin/phenix.fetch_pdb\n p2838\n sbg0\n (g17\n g2\n Ntp2839\n Rp2840\n (dp2841\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/clashscore.py\n+Vlib/python3/dist-packages/mmtbx/command_line/fetch_pdb.py\n p2842\n sbsg0\n (g17\n g2\n Ntp2843\n Rp2844\n (dp2845\n g21\n g23\n sg26\n-Vbin/molprobity.clashscore\n+Vbin/iotbx.fetch_pdb\n p2846\n sbg0\n (g17\n g2\n Ntp2847\n Rp2848\n (dp2849\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/clashscore.py\n+Vlib/python3/dist-packages/mmtbx/command_line/fetch_pdb.py\n p2850\n sbsg0\n (g17\n g2\n Ntp2851\n Rp2852\n (dp2853\n g21\n g23\n sg26\n-Vbin/phenix.model_map\n+Vbin/phenix.real_space_correlation\n p2854\n sbg0\n (g17\n g2\n Ntp2855\n Rp2856\n (dp2857\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/model_map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/real_space_correlation.py\n p2858\n sbsg0\n (g17\n g2\n Ntp2859\n Rp2860\n (dp2861\n g21\n g23\n sg26\n-Vbin/mmtbx.quantum_interface\n+Vbin/phenix.molprobity\n p2862\n sbg0\n (g17\n g2\n Ntp2863\n Rp2864\n (dp2865\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/quantum_interface.py\n+Vlib/python3/dist-packages/mmtbx/command_line/molprobity.py\n p2866\n sbsg0\n (g17\n g2\n Ntp2867\n Rp2868\n (dp2869\n g21\n g23\n sg26\n-Vbin/phenix.helix_sheet_recs_as_pdb_files\n+Vbin/molprobity.molprobity\n p2870\n sbg0\n (g17\n g2\n Ntp2871\n Rp2872\n (dp2873\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py\n+Vlib/python3/dist-packages/mmtbx/command_line/molprobity.py\n p2874\n sbsg0\n (g17\n g2\n Ntp2875\n Rp2876\n (dp2877\n g21\n g23\n sg26\n-Vbin/mmtbx.development.ligand_restraints_validation\n+Vbin/mmtbx.apply_ncs_to_ligand\n p2878\n sbg0\n (g17\n g2\n Ntp2879\n Rp2880\n (dp2881\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/ligand_restraints_validation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py\n p2882\n sbsg0\n (g17\n g2\n Ntp2883\n Rp2884\n (dp2885\n g21\n g23\n sg26\n-Vbin/phenix.secondary_structure_validation\n+Vbin/phenix.xtriage\n p2886\n sbg0\n (g17\n g2\n Ntp2887\n Rp2888\n (dp2889\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/secondary_structure_validation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/xtriage.py\n p2890\n sbsg0\n (g17\n g2\n Ntp2891\n Rp2892\n (dp2893\n g21\n g23\n sg26\n-Vbin/mmtbx.superpose\n+Vbin/mmtbx.xtriage\n p2894\n sbg0\n (g17\n g2\n Ntp2895\n Rp2896\n (dp2897\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/superpose.py\n+Vlib/python3/dist-packages/mmtbx/command_line/xtriage.py\n p2898\n sbsg0\n (g17\n g2\n Ntp2899\n Rp2900\n (dp2901\n g21\n g23\n sg26\n-Vbin/phenix.xtriage\n+Vbin/phenix.geometry_minimization\n p2902\n sbg0\n (g17\n g2\n Ntp2903\n Rp2904\n (dp2905\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/xtriage.py\n+Vlib/python3/dist-packages/mmtbx/command_line/geometry_minimization.py\n p2906\n sbsg0\n (g17\n g2\n Ntp2907\n Rp2908\n (dp2909\n g21\n g23\n sg26\n-Vbin/mmtbx.xtriage\n+Vbin/mmtbx.rigid_bond_test\n p2910\n sbg0\n (g17\n g2\n Ntp2911\n Rp2912\n (dp2913\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/xtriage.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rigid_bond_test.py\n p2914\n sbsg0\n (g17\n g2\n Ntp2915\n Rp2916\n (dp2917\n g21\n g23\n sg26\n-Vbin/phenix.map_to_structure_factors\n+Vbin/phenix.barbed_wire_analysis\n p2918\n sbg0\n (g17\n g2\n Ntp2919\n Rp2920\n (dp2921\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/map_to_structure_factors.py\n+Vlib/python3/dist-packages/mmtbx/command_line/barbed_wire_analysis.py\n p2922\n sbsg0\n (g17\n g2\n Ntp2923\n Rp2924\n (dp2925\n g21\n g23\n sg26\n-Vbin/phenix.model_model_distances\n+Vbin/molprobity.barbed_wire_analysis\n p2926\n sbg0\n (g17\n g2\n Ntp2927\n Rp2928\n (dp2929\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/model_model_distances.py\n+Vlib/python3/dist-packages/mmtbx/command_line/barbed_wire_analysis.py\n p2930\n sbsg0\n (g17\n g2\n Ntp2931\n Rp2932\n (dp2933\n g21\n g23\n sg26\n-Vbin/mmtbx.super\n+Vbin/phenix.secondary_structure_restraints\n p2934\n sbg0\n (g17\n g2\n Ntp2935\n Rp2936\n (dp2937\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/super.py\n+Vlib/python3/dist-packages/mmtbx/command_line/secondary_structure_restraints.py\n p2938\n sbsg0\n (g17\n g2\n Ntp2939\n Rp2940\n (dp2941\n g21\n g23\n sg26\n-Vbin/molprobity.probescore_ligand\n+Vbin/mmtbx.superpose\n p2942\n sbg0\n (g17\n g2\n Ntp2943\n Rp2944\n (dp2945\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/probescore_ligand.py\n+Vlib/python3/dist-packages/mmtbx/command_line/superpose.py\n p2946\n sbsg0\n (g17\n g2\n Ntp2947\n Rp2948\n (dp2949\n g21\n g23\n sg26\n-Vbin/mmtbx.refine_anomalous_substructure\n+Vbin/phenix.models_as_chains\n p2950\n sbg0\n (g17\n g2\n Ntp2951\n Rp2952\n (dp2953\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py\n+Vlib/python3/dist-packages/mmtbx/command_line/models_as_chains.py\n p2954\n sbsg0\n (g17\n g2\n Ntp2955\n Rp2956\n (dp2957\n g21\n g23\n sg26\n-Vbin/mmtbx.find_residue_in_pdb\n+Vbin/mmtbx.table_one\n p2958\n sbg0\n (g17\n g2\n Ntp2959\n Rp2960\n (dp2961\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/find_residue_in_pdb.py\n+Vlib/python3/dist-packages/mmtbx/command_line/table_one.py\n p2962\n sbsg0\n (g17\n g2\n Ntp2963\n Rp2964\n (dp2965\n g21\n g23\n sg26\n-Vbin/phenix.kinemage\n+Vbin/phenix.find_tls_groups\n p2966\n sbg0\n (g17\n g2\n Ntp2967\n Rp2968\n (dp2969\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/kinemage.py\n+Vlib/python3/dist-packages/mmtbx/command_line/find_tls_groups.py\n p2970\n sbsg0\n (g17\n g2\n Ntp2971\n Rp2972\n (dp2973\n g21\n g23\n sg26\n-Vbin/molprobity.kinemage\n+Vbin/phenix.fem\n p2974\n sbg0\n (g17\n g2\n Ntp2975\n Rp2976\n (dp2977\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/kinemage.py\n+Vlib/python3/dist-packages/mmtbx/command_line/development_fem.py\n p2978\n sbsg0\n (g17\n g2\n Ntp2979\n Rp2980\n (dp2981\n g21\n g23\n sg26\n-Vbin/phenix.suitename_old\n+Vbin/phenix.feature_enhanced_map\n p2982\n sbg0\n (g17\n g2\n Ntp2983\n Rp2984\n (dp2985\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/suitename_old.py\n+Vlib/python3/dist-packages/mmtbx/command_line/development_fem.py\n p2986\n sbsg0\n (g17\n g2\n Ntp2987\n Rp2988\n (dp2989\n g21\n g23\n sg26\n-Vbin/molprobity.suitename_old\n+Vbin/phenix.tls_analysis\n p2990\n sbg0\n (g17\n g2\n Ntp2991\n Rp2992\n (dp2993\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/suitename_old.py\n+Vlib/python3/dist-packages/mmtbx/command_line/tls_analysis.py\n p2994\n sbsg0\n (g17\n g2\n Ntp2995\n Rp2996\n (dp2997\n g21\n g23\n sg26\n-Vbin/cctbx.suitename_old\n+Vbin/phenix.map_box\n p2998\n sbg0\n (g17\n g2\n Ntp2999\n Rp3000\n (dp3001\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/suitename_old.py\n+Vlib/python3/dist-packages/mmtbx/command_line/map_box.py\n p3002\n sbsg0\n (g17\n g2\n Ntp3003\n Rp3004\n (dp3005\n g21\n g23\n sg26\n-Vbin/phenix.cbetadev\n+Vbin/phenix.clashscore\n p3006\n sbg0\n (g17\n g2\n Ntp3007\n Rp3008\n (dp3009\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cbetadev.py\n+Vlib/python3/dist-packages/mmtbx/command_line/clashscore.py\n p3010\n sbsg0\n (g17\n g2\n Ntp3011\n Rp3012\n (dp3013\n g21\n g23\n sg26\n-Vbin/molprobity.cbetadev\n+Vbin/molprobity.clashscore\n p3014\n sbg0\n (g17\n g2\n Ntp3015\n Rp3016\n (dp3017\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cbetadev.py\n+Vlib/python3/dist-packages/mmtbx/command_line/clashscore.py\n p3018\n sbsg0\n (g17\n g2\n Ntp3019\n Rp3020\n (dp3021\n g21\n g23\n sg26\n-Vbin/phenix.pdbtools\n+Vbin/phenix.mtz2map\n p3022\n sbg0\n (g17\n g2\n Ntp3023\n Rp3024\n (dp3025\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/pdbtools.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mtz2map.py\n p3026\n sbsg0\n (g17\n g2\n Ntp3027\n Rp3028\n (dp3029\n g21\n g23\n sg26\n-Vbin/mmtbx.reduce2\n+Vbin/phenix.fft\n p3030\n sbg0\n (g17\n g2\n Ntp3031\n Rp3032\n (dp3033\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/reduce2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mtz2map.py\n p3034\n sbsg0\n (g17\n g2\n Ntp3035\n Rp3036\n (dp3037\n g21\n g23\n sg26\n-Vbin/mmtbx.search_pdb_symmetry\n+Vbin/mmtbx.fft\n p3038\n sbg0\n (g17\n g2\n Ntp3039\n Rp3040\n (dp3041\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/search_pdb_symmetry.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mtz2map.py\n p3042\n sbsg0\n (g17\n g2\n Ntp3043\n Rp3044\n (dp3045\n g21\n g23\n sg26\n-Vbin/mmtbx.prune_model\n+Vbin/phenix.rna_validate_bonds\n p3046\n sbg0\n (g17\n g2\n Ntp3047\n Rp3048\n (dp3049\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/prune_model.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_bonds.py\n p3050\n sbsg0\n (g17\n g2\n Ntp3051\n Rp3052\n (dp3053\n g21\n g23\n sg26\n-Vbin/phenix.geometry_minimization\n+Vbin/molprobity.rna_validate_bonds\n p3054\n sbg0\n (g17\n g2\n Ntp3055\n Rp3056\n (dp3057\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/geometry_minimization.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_bonds.py\n p3058\n sbsg0\n (g17\n g2\n Ntp3059\n Rp3060\n (dp3061\n g21\n g23\n sg26\n-Vbin/mmtbx.development.validate_ligands\n+Vbin/mmtbx.reduce2\n p3062\n sbg0\n (g17\n g2\n Ntp3063\n Rp3064\n (dp3065\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/validate_ligands.py\n+Vlib/python3/dist-packages/mmtbx/command_line/reduce2.py\n p3066\n sbsg0\n (g17\n g2\n Ntp3067\n Rp3068\n (dp3069\n g21\n g23\n sg26\n-Vbin/phenix.cif_as_mtz\n+Vbin/phenix.model_map\n p3070\n sbg0\n (g17\n g2\n Ntp3071\n Rp3072\n (dp3073\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cif_as_mtz.py\n+Vlib/python3/dist-packages/mmtbx/command_line/model_map.py\n p3074\n sbsg0\n (g17\n g2\n Ntp3075\n Rp3076\n (dp3077\n g21\n g23\n sg26\n-Vbin/iotbx.cif_as_mtz\n+Vbin/phenix.map_to_structure_factors\n p3078\n sbg0\n (g17\n g2\n Ntp3079\n Rp3080\n (dp3081\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cif_as_mtz.py\n+Vlib/python3/dist-packages/mmtbx/command_line/map_to_structure_factors.py\n p3082\n sbsg0\n (g17\n g2\n Ntp3083\n Rp3084\n (dp3085\n g21\n g23\n sg26\n-Vbin/phenix.rna_validate_puckers\n+Vbin/phenix.clashscore2\n p3086\n sbg0\n (g17\n g2\n Ntp3087\n Rp3088\n (dp3089\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_puckers.py\n+Vlib/python3/dist-packages/mmtbx/command_line/clashscore2.py\n p3090\n sbsg0\n (g17\n g2\n Ntp3091\n Rp3092\n (dp3093\n g21\n g23\n sg26\n-Vbin/molprobity.rna_validate_puckers\n+Vbin/molprobity.clashscore2\n p3094\n sbg0\n (g17\n g2\n Ntp3095\n Rp3096\n (dp3097\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_puckers.py\n+Vlib/python3/dist-packages/mmtbx/command_line/clashscore2.py\n p3098\n sbsg0\n (g17\n g2\n Ntp3099\n Rp3100\n (dp3101\n g21\n g23\n sg26\n-Vbin/phenix.map_comparison\n+Vbin/mmtbx.clashscore2\n p3102\n sbg0\n (g17\n g2\n Ntp3103\n Rp3104\n (dp3105\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/map_comparison.py\n+Vlib/python3/dist-packages/mmtbx/command_line/clashscore2.py\n p3106\n sbsg0\n (g17\n g2\n Ntp3107\n Rp3108\n (dp3109\n g21\n g23\n sg26\n-Vbin/phenix.undowser_validation\n+Vbin/phenix.map_to_model_histogram\n p3110\n sbg0\n (g17\n g2\n Ntp3111\n Rp3112\n (dp3113\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/undowser.py\n+Vlib/python3/dist-packages/mmtbx/command_line/map_to_model_histogram.py\n p3114\n sbsg0\n (g17\n g2\n Ntp3115\n Rp3116\n (dp3117\n g21\n g23\n sg26\n-Vbin/molprobity.undowser_validation\n+Vbin/mmtbx.mon_lib_cif_triage\n p3118\n sbg0\n (g17\n g2\n Ntp3119\n Rp3120\n (dp3121\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/undowser.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py\n p3122\n sbsg0\n (g17\n g2\n Ntp3123\n Rp3124\n (dp3125\n g21\n g23\n sg26\n-Vbin/phenix.rna_validate_bonds\n+Vbin/mmtbx.development.ligand_restraints_validation\n p3126\n sbg0\n (g17\n g2\n Ntp3127\n Rp3128\n (dp3129\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_bonds.py\n+Vlib/python3/dist-packages/mmtbx/command_line/ligand_restraints_validation.py\n p3130\n sbsg0\n (g17\n g2\n Ntp3131\n Rp3132\n (dp3133\n g21\n g23\n sg26\n-Vbin/molprobity.rna_validate_bonds\n+Vbin/phenix.hbond\n p3134\n sbg0\n (g17\n g2\n Ntp3135\n Rp3136\n (dp3137\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_bonds.py\n+Vlib/python3/dist-packages/mmtbx/command_line/hbond.py\n p3138\n sbsg0\n (g17\n g2\n Ntp3139\n Rp3140\n (dp3141\n g21\n g23\n sg26\n-Vbin/phenix.real_space_correlation\n+Vbin/mmtbx.plan_sad_experiment\n p3142\n sbg0\n (g17\n g2\n Ntp3143\n Rp3144\n (dp3145\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/real_space_correlation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/plan_sad_experiment.py\n p3146\n sbsg0\n (g17\n g2\n Ntp3147\n Rp3148\n (dp3149\n g21\n g23\n sg26\n-Vbin/phenix.omegalyze\n+Vbin/mmtbx.search_pdb_symmetry\n p3150\n sbg0\n (g17\n g2\n Ntp3151\n Rp3152\n (dp3153\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/omegalyze.py\n+Vlib/python3/dist-packages/mmtbx/command_line/search_pdb_symmetry.py\n p3154\n sbsg0\n (g17\n g2\n Ntp3155\n Rp3156\n (dp3157\n g21\n g23\n sg26\n-Vbin/molprobity.omegalyze\n+Vbin/phenix.validate_H\n p3158\n sbg0\n (g17\n g2\n Ntp3159\n Rp3160\n (dp3161\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/omegalyze.py\n+Vlib/python3/dist-packages/mmtbx/command_line/validate_H_cl_app.py\n p3162\n sbsg0\n (g17\n g2\n Ntp3163\n Rp3164\n (dp3165\n g21\n g23\n sg26\n-Vbin/phenix.undowser2_validation\n+Vbin/mmtbx.quantum_interface\n p3166\n sbg0\n (g17\n g2\n Ntp3167\n Rp3168\n (dp3169\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/undowser2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/quantum_interface.py\n p3170\n sbsg0\n (g17\n g2\n Ntp3171\n Rp3172\n (dp3173\n g21\n g23\n sg26\n-Vbin/mmtbx.undowser2_validation\n+Vbin/mmtbx.find_residue_in_pdb\n p3174\n sbg0\n (g17\n g2\n Ntp3175\n Rp3176\n (dp3177\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/undowser2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/find_residue_in_pdb.py\n p3178\n sbsg0\n (g17\n g2\n Ntp3179\n Rp3180\n (dp3181\n g21\n g23\n sg26\n-Vbin/molprobity.undowser2_validation\n+Vbin/phenix.real_space_diff_map\n p3182\n sbg0\n (g17\n g2\n Ntp3183\n Rp3184\n (dp3185\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/undowser2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/real_space_diff_map.py\n p3186\n sbsg0\n (g17\n g2\n Ntp3187\n Rp3188\n (dp3189\n g21\n g23\n sg26\n-Vbin/mmtbx.plan_sad_experiment\n+Vbin/mmtbx.altloc_remediate\n p3190\n sbg0\n (g17\n g2\n Ntp3191\n Rp3192\n (dp3193\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/plan_sad_experiment.py\n+Vlib/python3/dist-packages/mmtbx/command_line/altloc_remediate.py\n p3194\n sbsg0\n (g17\n g2\n Ntp3195\n Rp3196\n (dp3197\n g21\n g23\n sg26\n-Vbin/phenix.validate_H\n+Vbin/mmtbx.development.validate_ligands\n p3198\n sbg0\n (g17\n g2\n Ntp3199\n Rp3200\n (dp3201\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/validate_H_cl_app.py\n+Vlib/python3/dist-packages/mmtbx/command_line/validate_ligands.py\n p3202\n sbsg0\n (g17\n g2\n Ntp3203\n Rp3204\n (dp3205\n g21\n g23\n sg26\n-Vbin/phenix.cablam_idealization\n+Vbin/mmtbx.distance_difference\n p3206\n sbg0\n (g17\n g2\n Ntp3207\n Rp3208\n (dp3209\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cablam_idealization.py\n+Vlib/python3/dist-packages/mmtbx/command_line/distance_difference.py\n p3210\n sbsg0\n (g17\n g2\n Ntp3211\n Rp3212\n (dp3213\n g21\n g23\n sg26\n-Vbin/mmtbx.altloc_remediate\n+Vbin/mmtbx.nonbonded_overlaps\n p3214\n sbg0\n (g17\n g2\n Ntp3215\n Rp3216\n (dp3217\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/altloc_remediate.py\n+Vlib/python3/dist-packages/mmtbx/command_line/nonbonded_overlaps.py\n p3218\n sbsg0\n (g17\n g2\n Ntp3219\n Rp3220\n (dp3221\n g21\n g23\n sg26\n-Vbin/phenix.sort_hetatms\n+Vbin/mmtbx.rebuild_rotarama_cache\n p3222\n sbg0\n (g17\n g2\n Ntp3223\n Rp3224\n (dp3225\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/sort_hetatms.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py\n p3226\n sbsg0\n (g17\n g2\n Ntp3227\n Rp3228\n (dp3229\n g21\n g23\n sg26\n-Vbin/phenix.r_factor_statistics\n+Vbin/phenix.f000\n p3230\n sbg0\n (g17\n g2\n Ntp3231\n Rp3232\n (dp3233\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/r_factor_statistics.py\n+Vlib/python3/dist-packages/mmtbx/command_line/f000.py\n p3234\n sbsg0\n (g17\n g2\n Ntp3235\n Rp3236\n (dp3237\n g21\n g23\n sg26\n-Vbin/phenix.suitename\n+Vbin/phenix.find_peaks_holes\n p3238\n sbg0\n (g17\n g2\n Ntp3239\n Rp3240\n (dp3241\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/suitename.py\n+Vlib/python3/dist-packages/mmtbx/command_line/find_peaks_holes.py\n p3242\n sbsg0\n (g17\n g2\n Ntp3243\n Rp3244\n (dp3245\n g21\n g23\n sg26\n-Vbin/molprobity.suitename\n+Vbin/mmtbx.find_peaks_holes\n p3246\n sbg0\n (g17\n g2\n Ntp3247\n Rp3248\n (dp3249\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/suitename.py\n+Vlib/python3/dist-packages/mmtbx/command_line/find_peaks_holes.py\n p3250\n sbsg0\n (g17\n g2\n Ntp3251\n Rp3252\n (dp3253\n g21\n g23\n sg26\n-Vbin/cctbx.suitename\n+Vbin/mmtbx.refine_anomalous_substructure\n p3254\n sbg0\n (g17\n g2\n Ntp3255\n Rp3256\n (dp3257\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/suitename.py\n+Vlib/python3/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py\n p3258\n sbsg0\n (g17\n g2\n Ntp3259\n Rp3260\n (dp3261\n g21\n g23\n sg26\n-Vbin/mmtbx.ss_idealization\n+Vbin/mmtbx.rama_z\n p3262\n sbg0\n (g17\n g2\n Ntp3263\n Rp3264\n (dp3265\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/ss_idealization.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rama_z.py\n p3266\n sbsg0\n (g17\n g2\n Ntp3267\n Rp3268\n (dp3269\n g21\n g23\n sg26\n-Vbin/phenix.remove_outliers\n+Vbin/phenix.rama_z\n p3270\n sbg0\n (g17\n g2\n Ntp3271\n Rp3272\n (dp3273\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/remove_outliers.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rama_z.py\n p3274\n sbsg0\n (g17\n g2\n Ntp3275\n Rp3276\n (dp3277\n g21\n g23\n sg26\n-Vbin/mmtbx.density_modification\n+Vbin/phenix.emringer\n p3278\n sbg0\n (g17\n g2\n Ntp3279\n Rp3280\n (dp3281\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/density_modification.py\n+Vlib/python3/dist-packages/mmtbx/command_line/emringer.py\n p3282\n sbsg0\n (g17\n g2\n Ntp3283\n Rp3284\n (dp3285\n g21\n g23\n sg26\n-Vbin/phenix.xmanip\n+Vbin/mmtbx.massage_data\n p3286\n sbg0\n (g17\n g2\n Ntp3287\n Rp3288\n (dp3289\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/xmanip.py\n+Vlib/python3/dist-packages/mmtbx/command_line/massage_data.py\n p3290\n sbsg0\n (g17\n g2\n Ntp3291\n Rp3292\n (dp3293\n g21\n g23\n sg26\n-Vbin/phenix.maps\n+Vbin/phenix.model_vs_map\n p3294\n sbg0\n (g17\n g2\n Ntp3295\n Rp3296\n (dp3297\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/maps.py\n+Vlib/python3/dist-packages/mmtbx/command_line/model_vs_map.py\n p3298\n sbsg0\n (g17\n g2\n Ntp3299\n Rp3300\n (dp3301\n g21\n g23\n sg26\n-Vbin/mmtbx.model_vs_data\n+Vbin/mmtbx.estimate_bijvoet_ratio\n p3302\n sbg0\n (g17\n g2\n Ntp3303\n Rp3304\n (dp3305\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/model_vs_data.py\n+Vlib/python3/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py\n p3306\n sbsg0\n (g17\n g2\n Ntp3307\n Rp3308\n (dp3309\n g21\n g23\n sg26\n-Vbin/phenix.rotalyze\n+Vbin/phenix.maps\n p3310\n sbg0\n (g17\n g2\n Ntp3311\n Rp3312\n (dp3313\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rotalyze.py\n+Vlib/python3/dist-packages/mmtbx/command_line/maps.py\n p3314\n sbsg0\n (g17\n g2\n Ntp3315\n Rp3316\n (dp3317\n g21\n g23\n sg26\n-Vbin/molprobity.rotalyze\n+Vbin/phenix.tls\n p3318\n sbg0\n (g17\n g2\n Ntp3319\n Rp3320\n (dp3321\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rotalyze.py\n+Vlib/python3/dist-packages/mmtbx/command_line/tls.py\n p3322\n sbsg0\n (g17\n g2\n Ntp3323\n Rp3324\n (dp3325\n g21\n g23\n sg26\n-Vbin/mmtbx.hydrogenate\n+Vbin/phenix.cablam\n p3326\n sbg0\n (g17\n g2\n Ntp3327\n Rp3328\n (dp3329\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/hydrogenate.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cablam.py\n p3330\n sbsg0\n (g17\n g2\n Ntp3331\n Rp3332\n (dp3333\n g21\n g23\n sg26\n-Vbin/phenix.rna_validate_suites\n+Vbin/molprobity.cablam\n p3334\n sbg0\n (g17\n g2\n Ntp3335\n Rp3336\n (dp3337\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_suites.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cablam.py\n p3338\n sbsg0\n (g17\n g2\n Ntp3339\n Rp3340\n (dp3341\n g21\n g23\n sg26\n-Vbin/molprobity.rna_validate_suites\n+Vbin/phenix.model_model_distances\n p3342\n sbg0\n (g17\n g2\n Ntp3343\n Rp3344\n (dp3345\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_suites.py\n+Vlib/python3/dist-packages/mmtbx/command_line/model_model_distances.py\n p3346\n sbsg0\n (g17\n g2\n Ntp3347\n Rp3348\n (dp3349\n g21\n g23\n sg26\n-Vbin/phenix.cablam_validate\n+Vbin/mmtbx.arginine_geometry\n p3350\n sbg0\n (g17\n g2\n Ntp3351\n Rp3352\n (dp3353\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cablam_validate.py\n+Vlib/python3/dist-packages/mmtbx/command_line/arginine_geometry.py\n p3354\n sbsg0\n (g17\n g2\n Ntp3355\n Rp3356\n (dp3357\n g21\n g23\n sg26\n-Vbin/phenix.hbond\n+Vbin/phenix.grow_density\n p3358\n sbg0\n (g17\n g2\n Ntp3359\n Rp3360\n (dp3361\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/hbond.py\n+Vlib/python3/dist-packages/mmtbx/command_line/grow_density.py\n p3362\n sbsg0\n (g17\n g2\n Ntp3363\n Rp3364\n (dp3365\n g21\n g23\n sg26\n-Vbin/phenix.cc_star\n+Vbin/mmtbx.development.aev\n p3366\n sbg0\n (g17\n g2\n Ntp3367\n Rp3368\n (dp3369\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cc_star.py\n+Vlib/python3/dist-packages/mmtbx/command_line/development.aev.py\n p3370\n sbsg0\n (g17\n g2\n Ntp3371\n Rp3372\n (dp3373\n g21\n g23\n sg26\n-Vbin/phenix.molprobity\n+Vbin/mmtbx.probe2\n p3374\n sbg0\n (g17\n g2\n Ntp3375\n Rp3376\n (dp3377\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/molprobity.py\n+Vlib/python3/dist-packages/mmtbx/command_line/probe2.py\n p3378\n sbsg0\n (g17\n g2\n Ntp3379\n Rp3380\n (dp3381\n g21\n g23\n sg26\n-Vbin/molprobity.molprobity\n+Vbin/phenix.rotalyze\n p3382\n sbg0\n (g17\n g2\n Ntp3383\n Rp3384\n (dp3385\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/molprobity.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rotalyze.py\n p3386\n sbsg0\n (g17\n g2\n Ntp3387\n Rp3388\n (dp3389\n g21\n g23\n sg26\n-Vbin/phenix.polder\n+Vbin/molprobity.rotalyze\n p3390\n sbg0\n (g17\n g2\n Ntp3391\n Rp3392\n (dp3393\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/polder.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rotalyze.py\n p3394\n sbsg0\n (g17\n g2\n Ntp3395\n Rp3396\n (dp3397\n g21\n g23\n sg26\n-Vbin/mmtbx.rebuild_cablam_cache\n+Vbin/phenix.cablam_training\n p3398\n sbg0\n (g17\n g2\n Ntp3399\n Rp3400\n (dp3401\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cablam_training.py\n p3402\n sbsg0\n (g17\n g2\n Ntp3403\n Rp3404\n (dp3405\n g21\n g23\n sg26\n-Vbin/phenix.cablam_training\n+Vbin/mmtbx.ringer\n p3406\n sbg0\n (g17\n g2\n Ntp3407\n Rp3408\n (dp3409\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cablam_training.py\n+Vlib/python3/dist-packages/mmtbx/command_line/ringer.py\n p3410\n sbsg0\n (g17\n g2\n Ntp3411\n Rp3412\n (dp3413\n g21\n g23\n sg26\n-Vbin/phenix.find_tls_groups\n+Vbin/mmtbx.matthews\n p3414\n sbg0\n (g17\n g2\n Ntp3415\n Rp3416\n (dp3417\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/find_tls_groups.py\n+Vlib/python3/dist-packages/mmtbx/command_line/matthews.py\n p3418\n sbsg0\n (g17\n g2\n Ntp3419\n Rp3420\n (dp3421\n g21\n g23\n sg26\n-Vbin/phenix.barbed_wire_analysis\n+Vbin/phenix.polder\n p3422\n sbg0\n (g17\n g2\n Ntp3423\n Rp3424\n (dp3425\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/barbed_wire_analysis.py\n+Vlib/python3/dist-packages/mmtbx/command_line/polder.py\n p3426\n sbsg0\n (g17\n g2\n Ntp3427\n Rp3428\n (dp3429\n g21\n g23\n sg26\n-Vbin/molprobity.barbed_wire_analysis\n+Vbin/mmtbx.development.water_b_factors\n p3430\n sbg0\n (g17\n g2\n Ntp3431\n Rp3432\n (dp3433\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/barbed_wire_analysis.py\n+Vlib/python3/dist-packages/mmtbx/command_line/water_b_factors.py\n p3434\n sbsg0\n (g17\n g2\n Ntp3435\n Rp3436\n (dp3437\n g21\n g23\n sg26\n-Vbin/phenix.ramalyze\n+Vbin/mmtbx.super\n p3438\n sbg0\n (g17\n g2\n Ntp3439\n Rp3440\n (dp3441\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/ramalyze.py\n+Vlib/python3/dist-packages/mmtbx/command_line/super.py\n p3442\n sbsg0\n (g17\n g2\n Ntp3443\n Rp3444\n (dp3445\n g21\n g23\n sg26\n-Vbin/molprobity.ramalyze\n+Vbin/phenix.cc_star\n p3446\n sbg0\n (g17\n g2\n Ntp3447\n Rp3448\n (dp3449\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/ramalyze.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cc_star.py\n p3450\n sbsg0\n (g17\n g2\n Ntp3451\n Rp3452\n (dp3453\n g21\n g23\n sg26\n-Vbin/mmtbx.ringer\n+Vbin/phenix.kinemage\n p3454\n sbg0\n (g17\n g2\n Ntp3455\n Rp3456\n (dp3457\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/ringer.py\n+Vlib/python3/dist-packages/mmtbx/command_line/kinemage.py\n p3458\n sbsg0\n (g17\n g2\n Ntp3459\n Rp3460\n (dp3461\n g21\n g23\n sg26\n-Vbin/phenix.map_box\n+Vbin/molprobity.kinemage\n p3462\n sbg0\n (g17\n g2\n Ntp3463\n Rp3464\n (dp3465\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/map_box.py\n+Vlib/python3/dist-packages/mmtbx/command_line/kinemage.py\n p3466\n sbsg0\n (g17\n g2\n Ntp3467\n Rp3468\n (dp3469\n g21\n g23\n sg26\n-Vbin/mmtbx.development.water_b_factors\n+Vbin/phenix.mask\n p3470\n sbg0\n (g17\n g2\n Ntp3471\n Rp3472\n (dp3473\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/water_b_factors.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mask.py\n p3474\n sbsg0\n (g17\n g2\n Ntp3475\n Rp3476\n (dp3477\n g21\n g23\n sg26\n-Vbin/phenix.map_to_model_histogram\n+Vbin/phenix.xmanip\n p3478\n sbg0\n (g17\n g2\n Ntp3479\n Rp3480\n (dp3481\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/map_to_model_histogram.py\n+Vlib/python3/dist-packages/mmtbx/command_line/xmanip.py\n p3482\n sbsg0\n (g17\n g2\n Ntp3483\n Rp3484\n (dp3485\n g21\n g23\n sg26\n-Vbin/phenix.models_as_chains\n+Vbin/phenix.angle\n p3486\n sbg0\n (g17\n g2\n Ntp3487\n Rp3488\n (dp3489\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/models_as_chains.py\n+Vlib/python3/dist-packages/mmtbx/command_line/angle.py\n p3490\n sbsg0\n (g17\n g2\n Ntp3491\n Rp3492\n (dp3493\n g21\n g23\n sg26\n-Vbin/mmtbx.rigid_bond_test\n+Vbin/mmtbx.ss_idealization\n p3494\n sbg0\n (g17\n g2\n Ntp3495\n Rp3496\n (dp3497\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rigid_bond_test.py\n+Vlib/python3/dist-packages/mmtbx/command_line/ss_idealization.py\n p3498\n sbsg0\n (g17\n g2\n Ntp3499\n Rp3500\n (dp3501\n g21\n g23\n sg26\n-Vbin/mmtbx.process_predicted_model\n+Vbin/mmtbx.rebuild_cablam_cache\n p3502\n sbg0\n (g17\n g2\n Ntp3503\n Rp3504\n (dp3505\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/process_predicted_model.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py\n p3506\n sbsg0\n (g17\n g2\n Ntp3507\n Rp3508\n (dp3509\n g21\n g23\n sg26\n-Vbin/phenix.process_predicted_model\n+Vbin/mmtbx.density_modification\n p3510\n sbg0\n (g17\n g2\n Ntp3511\n Rp3512\n (dp3513\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/process_predicted_model.py\n+Vlib/python3/dist-packages/mmtbx/command_line/density_modification.py\n p3514\n sbsg0\n (g17\n g2\n Ntp3515\n Rp3516\n (dp3517\n g21\n g23\n sg26\n-Vbin/mmtbx.estimate_bijvoet_ratio\n+Vbin/phenix.omegalyze\n p3518\n sbg0\n (g17\n g2\n Ntp3519\n Rp3520\n (dp3521\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py\n+Vlib/python3/dist-packages/mmtbx/command_line/omegalyze.py\n p3522\n sbsg0\n (g17\n g2\n Ntp3523\n Rp3524\n (dp3525\n g21\n g23\n sg26\n-Vbin/mmtbx.nonbonded_overlaps\n+Vbin/molprobity.omegalyze\n p3526\n sbg0\n (g17\n g2\n Ntp3527\n Rp3528\n (dp3529\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/nonbonded_overlaps.py\n+Vlib/python3/dist-packages/mmtbx/command_line/omegalyze.py\n p3530\n sbsg0\n (g17\n g2\n Ntp3531\n Rp3532\n (dp3533\n g21\n g23\n sg26\n-Vbin/phenix.f000\n+Vbin/mmtbx.process_predicted_model\n p3534\n sbg0\n (g17\n g2\n Ntp3535\n Rp3536\n (dp3537\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/f000.py\n+Vlib/python3/dist-packages/mmtbx/command_line/process_predicted_model.py\n p3538\n sbsg0\n (g17\n g2\n Ntp3539\n Rp3540\n (dp3541\n g21\n g23\n sg26\n-Vbin/phenix.clashscore2\n+Vbin/phenix.process_predicted_model\n p3542\n sbg0\n (g17\n g2\n Ntp3543\n Rp3544\n (dp3545\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/clashscore2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/process_predicted_model.py\n p3546\n sbsg0\n (g17\n g2\n Ntp3547\n Rp3548\n (dp3549\n g21\n g23\n sg26\n-Vbin/molprobity.clashscore2\n+Vbin/phenix.cablam_validate\n p3550\n sbg0\n (g17\n g2\n Ntp3551\n Rp3552\n (dp3553\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/clashscore2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cablam_validate.py\n p3554\n sbsg0\n (g17\n g2\n Ntp3555\n Rp3556\n (dp3557\n g21\n g23\n sg26\n-Vbin/mmtbx.clashscore2\n+Vbin/phenix.pdb_interpretation\n p3558\n sbg0\n (g17\n g2\n Ntp3559\n Rp3560\n (dp3561\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/clashscore2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/pdb_interpretation.py\n p3562\n sbsg0\n (g17\n g2\n Ntp3563\n Rp3564\n (dp3565\n g21\n g23\n sg26\n-Vbin/mmtbx.table_one\n+Vbin/mmtbx.pdb_interpretation\n p3566\n sbg0\n (g17\n g2\n Ntp3567\n Rp3568\n (dp3569\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/table_one.py\n+Vlib/python3/dist-packages/mmtbx/command_line/pdb_interpretation.py\n p3570\n sbsg0\n (g17\n g2\n Ntp3571\n Rp3572\n (dp3573\n g21\n g23\n sg26\n-Vbin/phenix.model_vs_map\n+Vbin/mmtbx.show_r_factors_by_shell\n p3574\n sbg0\n (g17\n g2\n Ntp3575\n Rp3576\n (dp3577\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/model_vs_map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py\n p3578\n sbsg0\n (g17\n g2\n Ntp3579\n Rp3580\n (dp3581\n g21\n g23\n sg26\n-Vbin/phenix.fake_f_obs\n+Vbin/mmtbx.select_best_starting_model\n p3582\n sbg0\n (g17\n g2\n Ntp3583\n Rp3584\n (dp3585\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/fake_f_obs.py\n+Vlib/python3/dist-packages/mmtbx/command_line/select_best_starting_model.py\n p3586\n sbsg0\n (g17\n g2\n Ntp3587\n Rp3588\n (dp3589\n g21\n g23\n sg26\n-Vbin/mmtbx.rebuild_rotarama_cache\n+Vbin/phenix.chiral_validation\n p3590\n sbg0\n (g17\n g2\n Ntp3591\n Rp3592\n (dp3593\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py\n+Vlib/python3/dist-packages/mmtbx/command_line/chiral_validation.py\n p3594\n sbsg0\n (g17\n g2\n Ntp3595\n Rp3596\n (dp3597\n g21\n g23\n sg26\n-Vbin/mmtbx.verify_mon_lib_data\n+Vbin/molprobity.chiral_validation\n p3598\n sbg0\n (g17\n g2\n Ntp3599\n Rp3600\n (dp3601\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/verify_mon_lib_data.py\n+Vlib/python3/dist-packages/mmtbx/command_line/chiral_validation.py\n p3602\n sbsg0\n (g17\n g2\n Ntp3603\n Rp3604\n (dp3605\n g21\n g23\n sg26\n-Vbin/mmtbx.ribbons\n+Vbin/phenix.undowser2_validation\n p3606\n sbg0\n (g17\n g2\n Ntp3607\n Rp3608\n (dp3609\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/ribbons.py\n+Vlib/python3/dist-packages/mmtbx/command_line/undowser2.py\n p3610\n sbsg0\n (g17\n g2\n Ntp3611\n Rp3612\n (dp3613\n g21\n g23\n sg26\n-Vbin/phenix.cablam\n+Vbin/mmtbx.undowser2_validation\n p3614\n sbg0\n (g17\n g2\n Ntp3615\n Rp3616\n (dp3617\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cablam.py\n+Vlib/python3/dist-packages/mmtbx/command_line/undowser2.py\n p3618\n sbsg0\n (g17\n g2\n Ntp3619\n Rp3620\n (dp3621\n g21\n g23\n sg26\n-Vbin/molprobity.cablam\n+Vbin/molprobity.undowser2_validation\n p3622\n sbg0\n (g17\n g2\n Ntp3623\n Rp3624\n (dp3625\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cablam.py\n+Vlib/python3/dist-packages/mmtbx/command_line/undowser2.py\n p3626\n sbsg0\n (g17\n g2\n Ntp3627\n Rp3628\n (dp3629\n g21\n g23\n sg26\n-Vbin/mmtbx.rama_z\n+Vbin/phenix.r_factor_statistics\n p3630\n sbg0\n (g17\n g2\n Ntp3631\n Rp3632\n (dp3633\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rama_z.py\n+Vlib/python3/dist-packages/mmtbx/command_line/r_factor_statistics.py\n p3634\n sbsg0\n (g17\n g2\n Ntp3635\n Rp3636\n (dp3637\n g21\n g23\n sg26\n-Vbin/phenix.rama_z\n+Vbin/phenix.fmodel\n p3638\n sbg0\n (g17\n g2\n Ntp3639\n Rp3640\n (dp3641\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rama_z.py\n+Vlib/python3/dist-packages/mmtbx/command_line/fmodel.py\n p3642\n sbsg0\n (g17\n g2\n Ntp3643\n Rp3644\n (dp3645\n g21\n g23\n sg26\n-Vbin/phenix.emringer\n+Vbin/molprobity.probescore_ligand\n p3646\n sbg0\n (g17\n g2\n Ntp3647\n Rp3648\n (dp3649\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/emringer.py\n+Vlib/python3/dist-packages/mmtbx/command_line/probescore_ligand.py\n p3650\n sbsg0\n (g17\n g2\n Ntp3651\n Rp3652\n (dp3653\n g21\n g23\n sg26\n-Vbin/phenix.tls_as_xyz\n+Vbin/phenix.suitename\n p3654\n sbg0\n (g17\n g2\n Ntp3655\n Rp3656\n (dp3657\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/tls_as_xyz.py\n+Vlib/python3/dist-packages/mmtbx/command_line/suitename.py\n p3658\n sbsg0\n (g17\n g2\n Ntp3659\n Rp3660\n (dp3661\n g21\n g23\n sg26\n-Vbin/phenix.real_space_diff_map\n+Vbin/molprobity.suitename\n p3662\n sbg0\n (g17\n g2\n Ntp3663\n Rp3664\n (dp3665\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/real_space_diff_map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/suitename.py\n p3666\n sbsg0\n (g17\n g2\n Ntp3667\n Rp3668\n (dp3669\n g21\n g23\n sg26\n-Vbin/phenix.holton_geometry_validation\n+Vbin/cctbx.suitename\n p3670\n sbg0\n (g17\n g2\n Ntp3671\n Rp3672\n (dp3673\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/holton_geometry_validation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/suitename.py\n p3674\n sbsg0\n (g17\n g2\n Ntp3675\n Rp3676\n (dp3677\n g21\n g23\n sg26\n-Vbin/mmtbx.holton_geometry_validation\n+Vbin/phenix.ramalyze\n p3678\n sbg0\n (g17\n g2\n Ntp3679\n Rp3680\n (dp3681\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/holton_geometry_validation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/ramalyze.py\n p3682\n sbsg0\n (g17\n g2\n Ntp3683\n Rp3684\n (dp3685\n g21\n g23\n sg26\n-Vbin/phenix.fobs_minus_fobs_map\n+Vbin/molprobity.ramalyze\n p3686\n sbg0\n (g17\n g2\n Ntp3687\n Rp3688\n (dp3689\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/ramalyze.py\n p3690\n sbsg0\n (g17\n g2\n Ntp3691\n Rp3692\n (dp3693\n g21\n g23\n sg26\n-Vbin/mmtbx.mon_lib_cif_triage\n+Vbin/phenix.undowser_validation\n p3694\n sbg0\n (g17\n g2\n Ntp3695\n Rp3696\n (dp3697\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py\n+Vlib/python3/dist-packages/mmtbx/command_line/undowser.py\n p3698\n sbsg0\n (g17\n g2\n Ntp3699\n Rp3700\n (dp3701\n g21\n g23\n sg26\n-Vbin/phenix.chiral_validation\n+Vbin/molprobity.undowser_validation\n p3702\n sbg0\n (g17\n g2\n Ntp3703\n Rp3704\n (dp3705\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/chiral_validation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/undowser.py\n p3706\n sbsg0\n (g17\n g2\n Ntp3707\n Rp3708\n (dp3709\n g21\n g23\n sg26\n-Vbin/molprobity.chiral_validation\n+Vbin/mmtbx.ribbons\n p3710\n sbg0\n (g17\n g2\n Ntp3711\n Rp3712\n (dp3713\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/chiral_validation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/ribbons.py\n p3714\n sbsg0\n (g17\n g2\n Ntp3715\n Rp3716\n (dp3717\n g21\n g23\n sg26\n-Vbin/mmtbx.probe2\n+Vbin/phenix.secondary_structure_validation\n p3718\n sbg0\n (g17\n g2\n Ntp3719\n Rp3720\n (dp3721\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/probe2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/secondary_structure_validation.py\n p3722\n sbsg0\n (g17\n g2\n Ntp3723\n Rp3724\n (dp3725\n g21\n g23\n sg26\n-Vbin/phenix.angle\n+Vbin/phenix.pdbtools\n p3726\n sbg0\n (g17\n g2\n Ntp3727\n Rp3728\n (dp3729\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/angle.py\n+Vlib/python3/dist-packages/mmtbx/command_line/pdbtools.py\n p3730\n sbsg0\n (g17\n g2\n Ntp3731\n Rp3732\n (dp3733\n g21\n g23\n sg26\n-Vbin/mmtbx.mp_geo\n+Vbin/phenix.suitename_old\n p3734\n sbg0\n (g17\n g2\n Ntp3735\n Rp3736\n (dp3737\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mp_geo.py\n+Vlib/python3/dist-packages/mmtbx/command_line/suitename_old.py\n p3738\n sbsg0\n (g17\n g2\n Ntp3739\n Rp3740\n (dp3741\n g21\n g23\n sg26\n-Vbin/phenix.maximum_entropy_map\n+Vbin/molprobity.suitename_old\n p3742\n sbg0\n (g17\n g2\n Ntp3743\n Rp3744\n (dp3745\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/maximum_entropy_map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/suitename_old.py\n p3746\n sbsg0\n (g17\n g2\n Ntp3747\n Rp3748\n (dp3749\n g21\n g23\n sg26\n-Vbin/phenix.rna_validate\n+Vbin/cctbx.suitename_old\n p3750\n sbg0\n (g17\n g2\n Ntp3751\n Rp3752\n (dp3753\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate.py\n+Vlib/python3/dist-packages/mmtbx/command_line/suitename_old.py\n p3754\n sbsg0\n (g17\n g2\n Ntp3755\n Rp3756\n (dp3757\n g21\n g23\n sg26\n-Vbin/molprobity.rna_validate\n+Vbin/phenix.holton_geometry_validation\n p3758\n sbg0\n (g17\n g2\n Ntp3759\n Rp3760\n (dp3761\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate.py\n+Vlib/python3/dist-packages/mmtbx/command_line/holton_geometry_validation.py\n p3762\n sbsg0\n (g17\n g2\n Ntp3763\n Rp3764\n (dp3765\n g21\n g23\n sg26\n-Vbin/phenix.model_idealization\n+Vbin/mmtbx.holton_geometry_validation\n p3766\n sbg0\n (g17\n g2\n Ntp3767\n Rp3768\n (dp3769\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/model_idealization.py\n+Vlib/python3/dist-packages/mmtbx/command_line/holton_geometry_validation.py\n p3770\n sbsg0\n (g17\n g2\n Ntp3771\n Rp3772\n (dp3773\n g21\n g23\n sg26\n-Vbin/phenix.fab_elbow_angle\n+Vbin/phenix.tls_as_xyz\n p3774\n sbg0\n (g17\n g2\n Ntp3775\n Rp3776\n (dp3777\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/fab_elbow_angle.py\n+Vlib/python3/dist-packages/mmtbx/command_line/tls_as_xyz.py\n p3778\n sbsg0\n (g17\n g2\n Ntp3779\n Rp3780\n (dp3781\n g21\n g23\n sg26\n-Vbin/phenix.perigee\n+Vbin/phenix.cbetadev\n p3782\n sbg0\n (g17\n g2\n Ntp3783\n Rp3784\n (dp3785\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/perigee.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cbetadev.py\n p3786\n sbsg0\n (g17\n g2\n Ntp3787\n Rp3788\n (dp3789\n g21\n g23\n sg26\n-Vbin/phenix.dynamics\n+Vbin/molprobity.cbetadev\n p3790\n sbg0\n (g17\n g2\n Ntp3791\n Rp3792\n (dp3793\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/dynamics.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cbetadev.py\n p3794\n sbsg0\n (g17\n g2\n Ntp3795\n Rp3796\n (dp3797\n g21\n g23\n sg26\n-Vbin/mmtbx.development.aev\n+Vbin/phenix.helix_sheet_recs_as_pdb_files\n p3798\n sbg0\n (g17\n g2\n Ntp3799\n Rp3800\n (dp3801\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/development.aev.py\n+Vlib/python3/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py\n p3802\n sbsg0\n (g17\n g2\n Ntp3803\n Rp3804\n (dp3805\n g21\n g23\n sg26\n-Vbin/mmtbx.emringer_score\n+Vbin/mmtbx.model_vs_data\n p3806\n sbg0\n (g17\n g2\n Ntp3807\n Rp3808\n (dp3809\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/emringer_score.py\n+Vlib/python3/dist-packages/mmtbx/command_line/model_vs_data.py\n p3810\n sbsg0\n (g17\n g2\n Ntp3811\n Rp3812\n (dp3813\n g21\n g23\n sg26\n-Vbin/mmtbx.arginine_geometry\n+Vbin/phenix.reciprocal_space_arrays\n p3814\n sbg0\n (g17\n g2\n Ntp3815\n Rp3816\n (dp3817\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/arginine_geometry.py\n+Vlib/python3/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py\n p3818\n sbsg0\n (g17\n g2\n Ntp3819\n Rp3820\n (dp3821\n g21\n g23\n sg26\n-Vbin/phenix.tls\n+Vbin/phenix.cablam_idealization\n p3822\n sbg0\n (g17\n g2\n Ntp3823\n Rp3824\n (dp3825\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/tls.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cablam_idealization.py\n p3826\n sbsg0\n (g17\n g2\n Ntp3827\n Rp3828\n (dp3829\n g21\n g23\n sg26\n-Vbin/mmtbx.select_best_starting_model\n+Vbin/phenix.sisa\n p3830\n sbg0\n (g17\n g2\n Ntp3831\n Rp3832\n (dp3833\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/select_best_starting_model.py\n+Vlib/python3/dist-packages/mmtbx/command_line/sisa.py\n p3834\n sbsg0\n (g17\n g2\n Ntp3835\n Rp3836\n (dp3837\n g21\n g23\n sg26\n-Vbin/phenix.fmodel\n+Vbin/phenix.dynamics\n p3838\n sbg0\n (g17\n g2\n Ntp3839\n Rp3840\n (dp3841\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/fmodel.py\n+Vlib/python3/dist-packages/mmtbx/command_line/dynamics.py\n p3842\n sbsg0\n (g17\n g2\n Ntp3843\n Rp3844\n (dp3845\n g21\n g23\n sg26\n-Vbin/phenix.mask\n+Vbin/phenix.rna_validate_puckers\n p3846\n sbg0\n (g17\n g2\n Ntp3847\n Rp3848\n (dp3849\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mask.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_puckers.py\n p3850\n sbsg0\n (g17\n g2\n Ntp3851\n Rp3852\n (dp3853\n g21\n g23\n sg26\n-Vbin/mmtbx.prepare_pdb_deposition\n+Vbin/molprobity.rna_validate_puckers\n p3854\n sbg0\n (g17\n g2\n Ntp3855\n Rp3856\n (dp3857\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_puckers.py\n p3858\n sbsg0\n (g17\n g2\n Ntp3859\n Rp3860\n (dp3861\n g21\n g23\n sg26\n-Vbin/mmtbx.development.electrons\n+Vbin/phenix.sort_hetatms\n p3862\n sbg0\n (g17\n g2\n Ntp3863\n Rp3864\n (dp3865\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/electrons.py\n+Vlib/python3/dist-packages/mmtbx/command_line/sort_hetatms.py\n p3866\n sbsg0\n (g17\n g2\n Ntp3867\n Rp3868\n (dp3869\n g21\n g23\n sg26\n-Vbin/mmtbx.validation_summary\n+Vbin/phenix.rna_validate\n p3870\n sbg0\n (g17\n g2\n Ntp3871\n Rp3872\n (dp3873\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/validation_summary.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate.py\n p3874\n sbsg0\n (g17\n g2\n Ntp3875\n Rp3876\n (dp3877\n g21\n g23\n sg26\n-Vbin/phenix.sisa\n+Vbin/molprobity.rna_validate\n p3878\n sbg0\n (g17\n g2\n Ntp3879\n Rp3880\n (dp3881\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/sisa.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate.py\n p3882\n sbsg0\n (g17\n g2\n Ntp3883\n Rp3884\n (dp3885\n g21\n g23\n sg26\n-Vbin/phenix.rank_scale_map\n+Vbin/phenix.comparama\n p3886\n sbg0\n (g17\n g2\n Ntp3887\n Rp3888\n (dp3889\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rank_scale_map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/comparama.py\n p3890\n sbsg0\n (g17\n g2\n Ntp3891\n Rp3892\n (dp3893\n g21\n g23\n sg26\n-Vbin/phenix.mp_validate_bonds\n+Vbin/phenix.map_comparison\n p3894\n sbg0\n (g17\n g2\n Ntp3895\n Rp3896\n (dp3897\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mp_validate_bonds.py\n+Vlib/python3/dist-packages/mmtbx/command_line/map_comparison.py\n p3898\n sbsg0\n (g17\n g2\n Ntp3899\n Rp3900\n (dp3901\n g21\n g23\n sg26\n-Vbin/molprobity.mp_validate_bonds\n+Vbin/mmtbx.prepare_pdb_deposition\n p3902\n sbg0\n (g17\n g2\n Ntp3903\n Rp3904\n (dp3905\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mp_validate_bonds.py\n+Vlib/python3/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py\n p3906\n sbsg0\n (g17\n g2\n Ntp3907\n Rp3908\n (dp3909\n g21\n g23\n sg26\n-Vbin/phenix.pdb_atom_selection\n+Vbin/mmtbx.prune_model\n p3910\n sbg0\n (g17\n g2\n Ntp3911\n Rp3912\n (dp3913\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/pdb_atom_selection.py\n+Vlib/python3/dist-packages/mmtbx/command_line/prune_model.py\n p3914\n sbsg0\n (g17\n g2\n Ntp3915\n Rp3916\n (dp3917\n g21\n g23\n sg26\n-Vbin/mmtbx.apply_ncs_to_ligand\n+Vbin/phenix.perigee\n p3918\n sbg0\n (g17\n g2\n Ntp3919\n Rp3920\n (dp3921\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py\n+Vlib/python3/dist-packages/mmtbx/command_line/perigee.py\n p3922\n sbsg0\n (g17\n g2\n Ntp3923\n Rp3924\n (dp3925\n g21\n g23\n sg26\n-Vbin/phenix.pdb_interpretation\n+Vbin/mmtbx.emringer_score\n p3926\n sbg0\n (g17\n g2\n Ntp3927\n Rp3928\n (dp3929\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/pdb_interpretation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/emringer_score.py\n p3930\n sbsg0\n (g17\n g2\n Ntp3931\n Rp3932\n (dp3933\n g21\n g23\n sg26\n-Vbin/mmtbx.pdb_interpretation\n+Vbin/mmtbx.validation_summary\n p3934\n sbg0\n (g17\n g2\n Ntp3935\n Rp3936\n (dp3937\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/pdb_interpretation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/validation_summary.py\n p3938\n sbsg0\n (g17\n g2\n Ntp3939\n Rp3940\n (dp3941\n g21\n g23\n sg26\n-Vbin/mmtbx.show_r_factors_by_shell\n+Vbin/phenix.remove_outliers\n p3942\n sbg0\n (g17\n g2\n Ntp3943\n Rp3944\n (dp3945\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py\n+Vlib/python3/dist-packages/mmtbx/command_line/remove_outliers.py\n p3946\n sbsg0\n (g17\n g2\n Ntp3947\n Rp3948\n (dp3949\n g21\n g23\n sg26\n-Vbin/distl.sweep_strength\n+Vbin/distl.mp_spotfinder_server_read_file\n p3950\n sbg0\n (g17\n g2\n Ntp3951\n Rp3952\n (dp3953\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/spotfinder/command_line/sweep_strength.py\n+Vlib/python3/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py\n p3954\n sbsg0\n (g17\n g2\n Ntp3955\n Rp3956\n (dp3957\n g21\n g23\n sg26\n-Vbin/distl.image_viewer\n+Vbin/distl.sweep_strength\n p3958\n sbg0\n (g17\n g2\n Ntp3959\n Rp3960\n (dp3961\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/spotfinder/command_line/image_viewer.py\n+Vlib/python3/dist-packages/spotfinder/command_line/sweep_strength.py\n p3962\n sbsg0\n (g17\n g2\n Ntp3963\n Rp3964\n (dp3965\n@@ -10843,26 +10843,26 @@\n g2\n Ntp3971\n Rp3972\n (dp3973\n g21\n g23\n sg26\n-Vbin/distl.mp_spotfinder_server_read_file\n+Vbin/distl.image_viewer\n p3974\n sbg0\n (g17\n g2\n Ntp3975\n Rp3976\n (dp3977\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py\n+Vlib/python3/dist-packages/spotfinder/command_line/image_viewer.py\n p3978\n sbsg0\n (g17\n g2\n Ntp3979\n Rp3980\n (dp3981\n@@ -10931,180 +10931,180 @@\n g2\n Ntp4003\n Rp4004\n (dp4005\n g21\n g23\n sg26\n-Vbin/rstbx.simage.wx_display\n+Vbin/cctbx.image_viewer\n p4006\n sbg0\n (g17\n g2\n Ntp4007\n Rp4008\n (dp4009\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/simage.wx_display.py\n+Vlib/python3/dist-packages/rstbx/command_line/slip_viewer.py\n p4010\n sbsg0\n (g17\n g2\n Ntp4011\n Rp4012\n (dp4013\n g21\n g23\n sg26\n-Vbin/rstbx.index\n+Vbin/rstbx.simage.solver\n p4014\n sbg0\n (g17\n g2\n Ntp4015\n Rp4016\n (dp4017\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/index.py\n+Vlib/python3/dist-packages/rstbx/command_line/simage.solver.py\n p4018\n sbsg0\n (g17\n g2\n Ntp4019\n Rp4020\n (dp4021\n g21\n g23\n sg26\n-Vbin/cctbx.image_viewer\n+Vbin/phenix.example_viewer\n p4022\n sbg0\n (g17\n g2\n Ntp4023\n Rp4024\n (dp4025\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/slip_viewer.py\n+Vlib/python3/dist-packages/rstbx/command_line/example_viewer.py\n p4026\n sbsg0\n (g17\n g2\n Ntp4027\n Rp4028\n (dp4029\n g21\n g23\n sg26\n-Vbin/rstbx.simage.solver\n+Vbin/rstbx.index\n p4030\n sbg0\n (g17\n g2\n Ntp4031\n Rp4032\n (dp4033\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/simage.solver.py\n+Vlib/python3/dist-packages/rstbx/command_line/index.py\n p4034\n sbsg0\n (g17\n g2\n Ntp4035\n Rp4036\n (dp4037\n g21\n g23\n sg26\n-Vbin/rstbx.simage.create\n+Vbin/phenix.image_viewer\n p4038\n sbg0\n (g17\n g2\n Ntp4039\n Rp4040\n (dp4041\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/simage.create.py\n+Vlib/python3/dist-packages/rstbx/command_line/viewer.py\n p4042\n sbsg0\n (g17\n g2\n Ntp4043\n Rp4044\n (dp4045\n g21\n g23\n sg26\n-Vbin/phenix.example_viewer\n+Vbin/rstbx.simage.wx_display\n p4046\n sbg0\n (g17\n g2\n Ntp4047\n Rp4048\n (dp4049\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/example_viewer.py\n+Vlib/python3/dist-packages/rstbx/command_line/simage.wx_display.py\n p4050\n sbsg0\n (g17\n g2\n Ntp4051\n Rp4052\n (dp4053\n g21\n g23\n sg26\n-Vbin/phenix.image_viewer\n+Vbin/rstbx.simage.create\n p4054\n sbg0\n (g17\n g2\n Ntp4055\n Rp4056\n (dp4057\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/viewer.py\n+Vlib/python3/dist-packages/rstbx/command_line/simage.create.py\n p4058\n sbsg0\n (g17\n g2\n Ntp4059\n Rp4060\n (dp4061\n g21\n g23\n sg26\n-Vbin/mmtbx.pdb_statistics\n+Vbin/wxtbx.inspect_r_free_flags\n p4062\n sbg0\n (g17\n g2\n Ntp4063\n Rp4064\n (dp4065\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/pdb_statistics.py\n+Vlib/python3/dist-packages/wxtbx/command_line/inspect_r_free_flags.py\n p4066\n sbsg0\n (g17\n g2\n Ntp4067\n Rp4068\n (dp4069\n@@ -11151,136 +11151,136 @@\n g2\n Ntp4083\n Rp4084\n (dp4085\n g21\n g23\n sg26\n-Vbin/wxtbx.plan_sad_experiment\n+Vbin/mmtbx.bfactor_plot\n p4086\n sbg0\n (g17\n g2\n Ntp4087\n Rp4088\n (dp4089\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/plan_sad_experiment.py\n+Vlib/python3/dist-packages/wxtbx/command_line/b_plot.py\n p4090\n sbsg0\n (g17\n g2\n Ntp4091\n Rp4092\n (dp4093\n g21\n g23\n sg26\n-Vbin/wxtbx.anomalous_differences_histogram\n+Vbin/wxtbx.show_file_info\n p4094\n sbg0\n (g17\n g2\n Ntp4095\n Rp4096\n (dp4097\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py\n+Vlib/python3/dist-packages/wxtbx/command_line/show_file_info.py\n p4098\n sbsg0\n (g17\n g2\n Ntp4099\n Rp4100\n (dp4101\n g21\n g23\n sg26\n-Vbin/mmtbx.bfactor_plot\n+Vbin/phenix.pdb_editor\n p4102\n sbg0\n (g17\n g2\n Ntp4103\n Rp4104\n (dp4105\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/b_plot.py\n+Vlib/python3/dist-packages/wxtbx/command_line/pdb_editor.py\n p4106\n sbsg0\n (g17\n g2\n Ntp4107\n Rp4108\n (dp4109\n g21\n g23\n sg26\n-Vbin/cctbx.loggraph\n+Vbin/wxtbx.plan_sad_experiment\n p4110\n sbg0\n (g17\n g2\n Ntp4111\n Rp4112\n (dp4113\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/loggraph.py\n+Vlib/python3/dist-packages/wxtbx/command_line/plan_sad_experiment.py\n p4114\n sbsg0\n (g17\n g2\n Ntp4115\n Rp4116\n (dp4117\n g21\n g23\n sg26\n-Vbin/phenix.pdb_editor\n+Vbin/cctbx.loggraph\n p4118\n sbg0\n (g17\n g2\n Ntp4119\n Rp4120\n (dp4121\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/pdb_editor.py\n+Vlib/python3/dist-packages/wxtbx/command_line/loggraph.py\n p4122\n sbsg0\n (g17\n g2\n Ntp4123\n Rp4124\n (dp4125\n g21\n g23\n sg26\n-Vbin/wxtbx.inspect_r_free_flags\n+Vbin/wxtbx.anomalous_differences_histogram\n p4126\n sbg0\n (g17\n g2\n Ntp4127\n Rp4128\n (dp4129\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/inspect_r_free_flags.py\n+Vlib/python3/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py\n p4130\n sbsg0\n (g17\n g2\n Ntp4131\n Rp4132\n (dp4133\n@@ -11305,477 +11305,477 @@\n g2\n Ntp4139\n Rp4140\n (dp4141\n g21\n g23\n sg26\n-Vbin/wxtbx.show_file_info\n+Vbin/cctbx.plot_anomalous_scattering\n p4142\n sbg0\n (g17\n g2\n Ntp4143\n Rp4144\n (dp4145\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/show_file_info.py\n+Vlib/python3/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py\n p4146\n sbsg0\n (g17\n g2\n Ntp4147\n Rp4148\n (dp4149\n g21\n g23\n sg26\n-Vbin/cctbx.plot_anomalous_scattering\n+Vbin/mmtbx.pdb_statistics\n p4150\n sbg0\n (g17\n g2\n Ntp4151\n Rp4152\n (dp4153\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py\n+Vlib/python3/dist-packages/wxtbx/command_line/pdb_statistics.py\n p4154\n sbsg0\n (g17\n g2\n Ntp4155\n Rp4156\n (dp4157\n g21\n g23\n sg26\n-Vbin/dev.dxtbx.debug_memory\n+Vbin/dxtbx.saturation\n p4158\n sbg0\n (g17\n g2\n Ntp4159\n Rp4160\n (dp4161\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/debug_memory.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/saturation.py\n p4162\n sbsg0\n (g17\n g2\n Ntp4163\n Rp4164\n (dp4165\n g21\n g23\n sg26\n-Vbin/dxtbx.radial_average\n+Vbin/dxtbx.overload\n p4166\n sbg0\n (g17\n g2\n Ntp4167\n Rp4168\n (dp4169\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/radial_average.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/overload.py\n p4170\n sbsg0\n (g17\n g2\n Ntp4171\n Rp4172\n (dp4173\n g21\n g23\n sg26\n-Vbin/dxtbx.install_format\n+Vbin/dxtbx.show_mask_info\n p4174\n sbg0\n (g17\n g2\n Ntp4175\n Rp4176\n (dp4177\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/install_format.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_mask_info.py\n p4178\n sbsg0\n (g17\n g2\n Ntp4179\n Rp4180\n (dp4181\n g21\n g23\n sg26\n-Vbin/dxtbx.print_header\n+Vbin/dxtbx.detector_superpose\n p4182\n sbg0\n (g17\n g2\n Ntp4183\n Rp4184\n (dp4185\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/print_header.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/detector_superpose.py\n p4186\n sbsg0\n (g17\n g2\n Ntp4187\n Rp4188\n (dp4189\n g21\n g23\n sg26\n-Vbin/dev.dxtbx.read_sequence\n+Vbin/dxtbx.dlsnxs2cbf\n p4190\n sbg0\n (g17\n g2\n Ntp4191\n Rp4192\n (dp4193\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/read_sequence.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/dlsnxs2cbf.py\n p4194\n sbsg0\n (g17\n g2\n Ntp4195\n Rp4196\n (dp4197\n g21\n g23\n sg26\n-Vbin/dxtbx.any2nexus\n+Vbin/dxtbx.show_matching_formats\n p4198\n sbg0\n (g17\n g2\n Ntp4199\n Rp4200\n (dp4201\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/any2nexus.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_matching_formats.py\n p4202\n sbsg0\n (g17\n g2\n Ntp4203\n Rp4204\n (dp4205\n g21\n g23\n sg26\n-Vbin/dxtbx.dlsnxs2cbf\n+Vbin/dev.dxtbx.read_sequence\n p4206\n sbg0\n (g17\n g2\n Ntp4207\n Rp4208\n (dp4209\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/dlsnxs2cbf.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/read_sequence.py\n p4210\n sbsg0\n (g17\n g2\n Ntp4211\n Rp4212\n (dp4213\n g21\n g23\n sg26\n-Vbin/dxtbx.overload\n+Vbin/dxtbx.depends_on\n p4214\n sbg0\n (g17\n g2\n Ntp4215\n Rp4216\n (dp4217\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/overload.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/depends_on.py\n p4218\n sbsg0\n (g17\n g2\n Ntp4219\n Rp4220\n (dp4221\n g21\n g23\n sg26\n-Vbin/dxtbx.depends_on\n+Vbin/dxtbx.show_registry\n p4222\n sbg0\n (g17\n g2\n Ntp4223\n Rp4224\n (dp4225\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/depends_on.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_registry.py\n p4226\n sbsg0\n (g17\n g2\n Ntp4227\n Rp4228\n (dp4229\n g21\n g23\n sg26\n-Vbin/dxtbx.saturation\n+Vbin/dxtbx.plot_detector_models\n p4230\n sbg0\n (g17\n g2\n Ntp4231\n Rp4232\n (dp4233\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/saturation.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/plot_detector_models.py\n p4234\n sbsg0\n (g17\n g2\n Ntp4235\n Rp4236\n (dp4237\n g21\n g23\n sg26\n-Vbin/dxtbx.show_registry\n+Vbin/dxtbx.display_parallax_correction\n p4238\n sbg0\n (g17\n g2\n Ntp4239\n Rp4240\n (dp4241\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_registry.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/display_parallax_correction.py\n p4242\n sbsg0\n (g17\n g2\n Ntp4243\n Rp4244\n (dp4245\n g21\n g23\n sg26\n-Vbin/dxtbx.image_average\n+Vbin/dxtbx.install_format\n p4246\n sbg0\n (g17\n g2\n Ntp4247\n Rp4248\n (dp4249\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image_average.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/install_format.py\n p4250\n sbsg0\n (g17\n g2\n Ntp4251\n Rp4252\n (dp4253\n g21\n g23\n sg26\n-Vbin/cxi.image_average\n+Vbin/dxtbx.print_matching_images\n p4254\n sbg0\n (g17\n g2\n Ntp4255\n Rp4256\n (dp4257\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image_average.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/print_matching_images.py\n p4258\n sbsg0\n (g17\n g2\n Ntp4259\n Rp4260\n (dp4261\n g21\n g23\n sg26\n-Vbin/dxtbx.show_mask_info\n+Vbin/dev.dxtbx.debug_memory\n p4262\n sbg0\n (g17\n g2\n Ntp4263\n Rp4264\n (dp4265\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_mask_info.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/debug_memory.py\n p4266\n sbsg0\n (g17\n g2\n Ntp4267\n Rp4268\n (dp4269\n g21\n g23\n sg26\n-Vbin/dxtbx.display_parallax_correction\n+Vbin/dxtbx.image_average\n p4270\n sbg0\n (g17\n g2\n Ntp4271\n Rp4272\n (dp4273\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/display_parallax_correction.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image_average.py\n p4274\n sbsg0\n (g17\n g2\n Ntp4275\n Rp4276\n (dp4277\n g21\n g23\n sg26\n-Vbin/dxtbx.print_matching_images\n+Vbin/cxi.image_average\n p4278\n sbg0\n (g17\n g2\n Ntp4279\n Rp4280\n (dp4281\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/print_matching_images.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image_average.py\n p4282\n sbsg0\n (g17\n g2\n Ntp4283\n Rp4284\n (dp4285\n g21\n g23\n sg26\n-Vbin/dxtbx.show_matching_formats\n+Vbin/dxtbx.print_header\n p4286\n sbg0\n (g17\n g2\n Ntp4287\n Rp4288\n (dp4289\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_matching_formats.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/print_header.py\n p4290\n sbsg0\n (g17\n g2\n Ntp4291\n Rp4292\n (dp4293\n g21\n g23\n sg26\n-Vbin/dxtbx.plot_detector_models\n+Vbin/dxtbx.any2nexus\n p4294\n sbg0\n (g17\n g2\n Ntp4295\n Rp4296\n (dp4297\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/plot_detector_models.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/any2nexus.py\n p4298\n sbsg0\n (g17\n g2\n Ntp4299\n Rp4300\n (dp4301\n g21\n g23\n sg26\n-Vbin/dxtbx.image2pickle\n+Vbin/dxtbx.radial_average\n p4302\n sbg0\n (g17\n g2\n Ntp4303\n Rp4304\n (dp4305\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image2pickle.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/radial_average.py\n p4306\n sbsg0\n (g17\n g2\n Ntp4307\n Rp4308\n (dp4309\n g21\n g23\n sg26\n-Vbin/cxi.image2pickle\n+Vbin/dxtbx.image2pickle\n p4310\n sbg0\n (g17\n g2\n Ntp4311\n Rp4312\n (dp4313\n@@ -11789,26 +11789,26 @@\n g2\n Ntp4315\n Rp4316\n (dp4317\n g21\n g23\n sg26\n-Vbin/dxtbx.detector_superpose\n+Vbin/cxi.image2pickle\n p4318\n sbg0\n (g17\n g2\n Ntp4319\n Rp4320\n (dp4321\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/detector_superpose.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image2pickle.py\n p4322\n sbsg0\n (g17\n g2\n Ntp4323\n Rp4324\n (dp4325\n"}, {"source1": "./usr/lib/cctbx/python3.13/libtbx_env", "source2": "./usr/lib/cctbx/python3.13/libtbx_env", "unified_diff": "@@ -111,59 +111,59 @@\n p49\n NsVexplicitly_requested_modules\n p50\n c__builtin__\n set\n p51\n ((lp52\n-Viotbx\n+Vscitbx\n p53\n-aVmmtbx\n+aVspotfinder\n p54\n-aVwxtbx\n+aVtbxx\n p55\n-aVlibtbx\n+aViotbx\n p56\n-aVscitbx\n+aVannlib\n p57\n-aVserialtbx\n+aVdxtbx\n p58\n-aVomptbx\n+aVrstbx\n p59\n-aVfable\n-p60\n aVboost_adaptbx\n+p60\n+aVccp4io\n p61\n-aVgltbx\n+aVomptbx\n p62\n-aVccp4io\n+aVlibtbx\n p63\n-aVcbflib_adaptbx\n+aVserialtbx\n p64\n-aVspotfinder\n+aVcctbx\n p65\n-aVrstbx\n+aVwxtbx\n p66\n-aVtbxx\n+aVmmtbx\n p67\n-aVsmtbx\n+aVannlib_adaptbx\n p68\n-aVdxtbx\n+aVgltbx\n p69\n-aVcrys3d\n+aVcbflib_adaptbx\n p70\n-aVccp4io_adaptbx\n+aVfable\n p71\n-aVannlib\n+aVcrys3d\n p72\n-aVannlib_adaptbx\n+aVsmtbx\n p73\n-aVcma_es\n+aVccp4io_adaptbx\n p74\n-aVcctbx\n+aVcma_es\n p75\n atp76\n Rp77\n sVbuild_options\n p78\n g0\n (clibtbx.env_config\n@@ -642,15 +642,15 @@\n g136\n sg137\n Vannlib\n p271\n sg139\n (lp272\n g271\n-ag73\n+ag68\n asg142\n (lp273\n g0\n (g17\n g2\n Ntp274\n Rp275\n@@ -696,15 +696,15 @@\n g136\n sg137\n Vcbflib\n p291\n sg139\n (lp292\n g291\n-ag64\n+ag70\n asg142\n (lp293\n Nag0\n (g17\n g2\n Ntp294\n Rp295\n@@ -739,15 +739,15 @@\n g136\n sg137\n Vccp4io\n p307\n sg139\n (lp308\n g307\n-ag71\n+ag74\n asg142\n (lp309\n g0\n (g17\n g2\n Ntp310\n Rp311\n@@ -831,18 +831,18 @@\n Rp342\n (dp343\n g134\n g4\n sg135\n g136\n sg137\n-g75\n+g65\n sg139\n (lp344\n-g75\n+g65\n aVcctbx_adaptbx\n p345\n asg142\n (lp346\n g0\n (g17\n g2\n@@ -879,18 +879,18 @@\n Rp360\n (dp361\n g134\n g4\n sg135\n g136\n sg137\n-g70\n+g72\n sg139\n (lp362\n-g70\n+g72\n aVcrys3d_adaptbx\n p363\n asg142\n (lp364\n g0\n (g17\n g2\n@@ -1063,18 +1063,18 @@\n Rp431\n (dp432\n g134\n g4\n sg135\n g136\n sg137\n-g69\n+g58\n sg139\n (lp433\n-g69\n+g58\n aVdxtbx_adaptbx\n p434\n asg142\n (lp435\n g0\n (g17\n g2\n@@ -1108,18 +1108,18 @@\n Rp448\n (dp449\n g134\n g4\n sg135\n g136\n sg137\n-g62\n+g69\n sg139\n (lp450\n-g62\n+g69\n aVgltbx_adaptbx\n p451\n asg142\n (lp452\n g0\n (g17\n g2\n@@ -1151,18 +1151,18 @@\n Rp464\n (dp465\n g134\n g4\n sg135\n g136\n sg137\n-g54\n+g67\n sg139\n (lp466\n-g54\n+g67\n aVmmtbx_adaptbx\n p467\n asg142\n (lp468\n g0\n (g17\n g2\n@@ -1248,18 +1248,18 @@\n Rp501\n (dp502\n g134\n g4\n sg135\n g136\n sg137\n-g66\n+g59\n sg139\n (lp503\n-g66\n+g59\n aVrstbx_adaptbx\n p504\n asg142\n (lp505\n g0\n (g17\n g2\n@@ -1295,18 +1295,18 @@\n Rp517\n (dp518\n g134\n g4\n sg135\n g136\n sg137\n-g58\n+g64\n sg139\n (lp519\n-g58\n+g64\n aVserialtbx_adaptbx\n p520\n asg142\n (lp521\n g0\n (g17\n g2\n@@ -1337,18 +1337,18 @@\n Rp533\n (dp534\n g134\n g4\n sg135\n g136\n sg137\n-g55\n+g66\n sg139\n (lp535\n-g55\n+g66\n aVwxtbx_adaptbx\n p536\n asg142\n (lp537\n g0\n (g17\n g2\n@@ -1391,39 +1391,39 @@\n g217\n sg237\n g235\n sg291\n g289\n sg307\n g305\n-sg75\n+sg65\n g342\n sg327\n g325\n-sg70\n+sg72\n g360\n-sg69\n+sg58\n g431\n sg413\n g411\n sg378\n g376\n sg395\n g393\n-sg62\n+sg69\n g448\n-sg54\n+sg67\n g464\n-sg66\n+sg59\n g501\n sg485\n g483\n-sg58\n+sg64\n g517\n-sg55\n+sg66\n g533\n ssVmodule_dist_paths\n p550\n (dp551\n g138\n g0\n (g17\n@@ -1444,15 +1444,15 @@\n Rp557\n (dp558\n g21\n g23\n sg26\n Vlib/python3/dist-packages/annlib\n p559\n-sbsg73\n+sbsg68\n g0\n (g17\n g2\n Ntp560\n Rp561\n (dp562\n g21\n@@ -1540,15 +1540,15 @@\n Rp589\n (dp590\n g21\n g23\n sg26\n Vlib/python3/dist-packages/fable\n p591\n-sbsg64\n+sbsg70\n g0\n (g17\n g2\n Ntp592\n Rp593\n (dp594\n g21\n@@ -1564,27 +1564,27 @@\n Rp597\n (dp598\n g21\n g23\n sg26\n Vlib/python3/dist-packages/ccp4io\n p599\n-sbsg71\n+sbsg74\n g0\n (g17\n g2\n Ntp600\n Rp601\n (dp602\n g21\n g23\n sg26\n Vlib/python3/dist-packages/ccp4io_adaptbx\n p603\n-sbsg75\n+sbsg65\n g0\n (g17\n g2\n Ntp604\n Rp605\n (dp606\n g21\n@@ -1600,27 +1600,27 @@\n Rp609\n (dp610\n g21\n g23\n sg26\n Vlib/python3/dist-packages/chiltbx\n p611\n-sbsg70\n+sbsg72\n g0\n (g17\n g2\n Ntp612\n Rp613\n (dp614\n g21\n g23\n sg26\n Vlib/python3/dist-packages/crys3d\n p615\n-sbsg69\n+sbsg58\n g0\n (g17\n g2\n Ntp616\n Rp617\n (dp618\n g21\n@@ -1660,39 +1660,39 @@\n Rp629\n (dp630\n g21\n g23\n sg26\n Vlib/python3/dist-packages/smtbx\n p631\n-sbsg62\n+sbsg69\n g0\n (g17\n g2\n Ntp632\n Rp633\n (dp634\n g21\n g23\n sg26\n Vlib/python3/dist-packages/gltbx\n p635\n-sbsg54\n+sbsg67\n g0\n (g17\n g2\n Ntp636\n Rp637\n (dp638\n g21\n g23\n sg26\n Vlib/python3/dist-packages/mmtbx\n p639\n-sbsg66\n+sbsg59\n g0\n (g17\n g2\n Ntp640\n Rp641\n (dp642\n g21\n@@ -1708,27 +1708,27 @@\n Rp645\n (dp646\n g21\n g23\n sg26\n Vlib/python3/dist-packages/spotfinder\n p647\n-sbsg58\n+sbsg64\n g0\n (g17\n g2\n Ntp648\n Rp649\n (dp650\n g21\n g23\n sg26\n Vlib/python3/dist-packages/serialtbx\n p651\n-sbsg55\n+sbsg66\n g0\n (g17\n g2\n Ntp652\n Rp653\n (dp654\n g21\n@@ -1748,19 +1748,19 @@\n ((lp661\n tp662\n Rp663\n sVmissing_optional\n p664\n g51\n ((lp665\n-g426\n+g478\n+ag426\n+ag479\n ag249\n ag477\n-ag479\n-ag478\n atp666\n Rp667\n sVscons_dist_path\n p668\n g0\n (g17\n g2\n@@ -1823,2732 +1823,2732 @@\n g2\n Ntp691\n Rp692\n (dp693\n g21\n g23\n sg26\n-Vbin/libtbx.csh\n+Vbin/libtbx.install\n p694\n sbg0\n (g17\n g2\n Ntp695\n Rp696\n (dp697\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/csh.sh\n+Vlib/python3/dist-packages/libtbx/command_line/install.py\n p698\n sbsg0\n (g17\n g2\n Ntp699\n Rp700\n (dp701\n g21\n g23\n sg26\n-Vbin/libtbx.show_variable_names\n+Vbin/libtbx.list_modules\n p702\n sbg0\n (g17\n g2\n Ntp703\n Rp704\n (dp705\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_variable_names.py\n+Vlib/python3/dist-packages/libtbx/command_line/list_modules.py\n p706\n sbsg0\n (g17\n g2\n Ntp707\n Rp708\n (dp709\n g21\n g23\n sg26\n-Vbin/libtbx.find_clutter\n+Vbin/libtbx.make_sphinx_html\n p710\n sbg0\n (g17\n g2\n Ntp711\n Rp712\n (dp713\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/find_clutter.py\n+Vlib/python3/dist-packages/libtbx/command_line/make_sphinx_html.py\n p714\n sbsg0\n (g17\n g2\n Ntp715\n Rp716\n (dp717\n g21\n g23\n sg26\n-Vbin/libtbx.sge_qstat_counts\n+Vbin/libtbx.find_files\n p718\n sbg0\n (g17\n g2\n Ntp719\n Rp720\n (dp721\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/sge_qstat_counts.py\n+Vlib/python3/dist-packages/libtbx/command_line/find_files.py\n p722\n sbsg0\n (g17\n g2\n Ntp723\n Rp724\n (dp725\n g21\n g23\n sg26\n-Vbin/libtbx.find_under_build\n+Vbin/libtbx.list_source_files_sorted_by_size\n p726\n sbg0\n (g17\n g2\n Ntp727\n Rp728\n (dp729\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/find_under_build.py\n+Vlib/python3/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py\n p730\n sbsg0\n (g17\n g2\n Ntp731\n Rp732\n (dp733\n g21\n g23\n sg26\n-Vbin/libtbx.bibtex\n+Vbin/libtbx.seconds_since_the_epoch\n p734\n sbg0\n (g17\n g2\n Ntp735\n Rp736\n (dp737\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/bibtex.sh\n+Vlib/python3/dist-packages/libtbx/command_line/seconds_since_the_epoch.py\n p738\n sbsg0\n (g17\n g2\n Ntp739\n Rp740\n (dp741\n g21\n g23\n sg26\n-Vbin/libtbx.seconds_since_the_epoch\n+Vbin/libtbx.chunk\n p742\n sbg0\n (g17\n g2\n Ntp743\n Rp744\n (dp745\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/seconds_since_the_epoch.py\n+Vlib/python3/dist-packages/libtbx/command_line/chunk.py\n p746\n sbsg0\n (g17\n g2\n Ntp747\n Rp748\n (dp749\n g21\n g23\n sg26\n-Vbin/libtbx.list_source_files_sorted_by_size\n+Vbin/libtbx.scons\n 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sg26\n-Vlib/python3/dist-packages/libtbx/command_line/configure.sh\n+Vlib/python3/dist-packages/libtbx/command_line/bootstrap.py\n p1050\n sbsg0\n (g17\n g2\n Ntp1051\n Rp1052\n (dp1053\n g21\n g23\n sg26\n-Vbin/libtbx.show_numeric_version\n+Vbin/libtbx.import_all_python\n p1054\n sbg0\n (g17\n g2\n Ntp1055\n Rp1056\n (dp1057\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_numeric_version.py\n+Vlib/python3/dist-packages/libtbx/command_line/import_all_python.py\n p1058\n sbsg0\n (g17\n g2\n Ntp1059\n Rp1060\n (dp1061\n g21\n g23\n sg26\n-Vbin/libtbx.tcsh\n+Vbin/libtbx.bundle_as_exe\n p1062\n sbg0\n (g17\n g2\n Ntp1063\n Rp1064\n (dp1065\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/tcsh.sh\n+Vlib/python3/dist-packages/libtbx/command_line/bundle_as_exe.py\n p1066\n sbsg0\n (g17\n g2\n Ntp1067\n Rp1068\n (dp1069\n g21\n g23\n sg26\n-Vbin/libtbx.dtrace\n+Vbin/libtbx.find_in_repositories\n p1070\n sbg0\n (g17\n g2\n Ntp1071\n Rp1072\n (dp1073\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/dtrace.py\n+Vlib/python3/dist-packages/libtbx/command_line/find_in_repositories.py\n p1074\n sbsg0\n (g17\n g2\n Ntp1075\n Rp1076\n (dp1077\n g21\n g23\n sg26\n-Vbin/sphinx.build\n+Vbin/libtbx.find_unused_imports\n p1078\n sbg0\n (g17\n g2\n Ntp1079\n Rp1080\n (dp1081\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/sphinx_build.py\n+Vlib/python3/dist-packages/libtbx/command_line/find_unused_imports.py\n p1082\n sbsg0\n (g17\n g2\n Ntp1083\n Rp1084\n (dp1085\n g21\n g23\n sg26\n-Vbin/libtbx.show_build_path\n+Vbin/libtbx.assert_stdin\n p1086\n sbg0\n (g17\n g2\n Ntp1087\n Rp1088\n (dp1089\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_build_path.py\n+Vlib/python3/dist-packages/libtbx/command_line/assert_stdin.py\n p1090\n sbsg0\n (g17\n g2\n Ntp1091\n Rp1092\n (dp1093\n g21\n g23\n sg26\n-Vbin/libtbx.create_installer\n+Vbin/libtbx.list_files\n p1094\n sbg0\n (g17\n g2\n 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sg26\n-Vlib/python3/dist-packages/libtbx/command_line/resource_monitor_plot.py\n+Vlib/python3/dist-packages/libtbx/command_line/remote_processing.py\n p1162\n sbsg0\n (g17\n g2\n Ntp1163\n Rp1164\n (dp1165\n g21\n g23\n sg26\n-Vbin/libtbx.clean_clutter\n+Vbin/libtbx.create_selfx\n p1166\n sbg0\n (g17\n g2\n Ntp1167\n Rp1168\n (dp1169\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/clean_clutter.py\n+Vlib/python3/dist-packages/libtbx/command_line/create_selfx.py\n p1170\n sbsg0\n (g17\n g2\n Ntp1171\n Rp1172\n (dp1173\n g21\n g23\n sg26\n-Vbin/libtbx.raise_exception_for_testing\n+Vbin/libtbx.show_full_command_path\n p1174\n sbg0\n (g17\n g2\n Ntp1175\n Rp1176\n (dp1177\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/raise_exception_for_testing.py\n+Vlib/python3/dist-packages/libtbx/command_line/show_full_command_path.py\n p1178\n sbsg0\n (g17\n g2\n Ntp1179\n Rp1180\n (dp1181\n g21\n g23\n sg26\n-Vbin/libtbx.create_mac_app\n+Vbin/libtbx.show_numeric_version\n p1182\n sbg0\n (g17\n g2\n Ntp1183\n Rp1184\n (dp1185\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/create_mac_app.py\n+Vlib/python3/dist-packages/libtbx/command_line/show_numeric_version.py\n p1186\n sbsg0\n (g17\n g2\n Ntp1187\n Rp1188\n (dp1189\n g21\n g23\n sg26\n-Vbin/libtbx.create_cctbx_bundle_for_installer\n+Vbin/libtbx.analyse_code_comments\n p1190\n sbg0\n (g17\n g2\n Ntp1191\n Rp1192\n (dp1193\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py\n+Vlib/python3/dist-packages/libtbx/command_line/analyse_code_comments.py\n p1194\n sbsg0\n (g17\n g2\n Ntp1195\n Rp1196\n (dp1197\n g21\n g23\n sg26\n-Vbin/libtbx.show_tests\n+Vbin/libtbx.find_untested\n p1198\n sbg0\n (g17\n g2\n Ntp1199\n Rp1200\n (dp1201\n g21\n g23\n 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sg26\n-Vbin/libtbx.assert_line_count\n+Vbin/libtbx.printenv\n p1246\n sbg0\n (g17\n g2\n Ntp1247\n Rp1248\n (dp1249\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/assert_line_count.py\n+Vlib/python3/dist-packages/libtbx/command_line/printenv.py\n p1250\n sbsg0\n (g17\n g2\n Ntp1251\n Rp1252\n (dp1253\n g21\n g23\n sg26\n-Vbin/libtbx.printenv\n+Vbin/libtbx.sh\n p1254\n sbg0\n (g17\n g2\n Ntp1255\n Rp1256\n (dp1257\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/printenv.py\n+Vlib/python3/dist-packages/libtbx/command_line/sh.sh\n p1258\n sbsg0\n (g17\n g2\n Ntp1259\n Rp1260\n (dp1261\n g21\n g23\n sg26\n-Vbin/libtbx.find_unused_imports\n+Vbin/libtbx.show_but_no_repr\n p1262\n sbg0\n (g17\n g2\n Ntp1263\n Rp1264\n (dp1265\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/find_unused_imports.py\n+Vlib/python3/dist-packages/libtbx/command_line/show_but_no_repr.py\n p1266\n sbsg0\n (g17\n g2\n Ntp1267\n Rp1268\n (dp1269\n g21\n g23\n sg26\n-Vbin/libtbx.install_conda\n+Vbin/libtbx.line_count\n p1270\n sbg0\n (g17\n g2\n Ntp1271\n Rp1272\n (dp1273\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/install_conda.py\n+Vlib/python3/dist-packages/libtbx/command_line/line_count.py\n p1274\n sbsg0\n (g17\n g2\n Ntp1275\n Rp1276\n (dp1277\n g21\n g23\n sg26\n-Vbin/libtbx.show_environ_usage\n+Vbin/libtbx.phil\n p1278\n sbg0\n (g17\n g2\n Ntp1279\n Rp1280\n (dp1281\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_environ_usage.py\n+Vlib/python3/dist-packages/libtbx/command_line/phil.py\n p1282\n sbsg0\n (g17\n g2\n Ntp1283\n Rp1284\n (dp1285\n g21\n g23\n sg26\n-Vbin/libtbx.sh\n+Vbin/libtbx.show_python_dependencies\n p1286\n sbg0\n (g17\n g2\n Ntp1287\n Rp1288\n (dp1289\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/sh.sh\n+Vlib/python3/dist-packages/libtbx/command_line/show_python_dependencies.py\n p1290\n sbsg0\n (g17\n g2\n Ntp1291\n Rp1292\n (dp1293\n g21\n 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sg26\n-Vlib/python3/dist-packages/libtbx/command_line/show_python_sys_executable.py\n+Vlib/python3/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py\n p1314\n sbsg0\n (g17\n g2\n Ntp1315\n Rp1316\n (dp1317\n g21\n g23\n sg26\n-Vbin/libtbx.parallel_simple\n+Vbin/libtbx.assert_stdin_does_not_contain_strings\n p1318\n sbg0\n (g17\n g2\n Ntp1319\n Rp1320\n (dp1321\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/parallel_simple.py\n+Vlib/python3/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py\n p1322\n sbsg0\n (g17\n g2\n Ntp1323\n Rp1324\n (dp1325\n g21\n g23\n sg26\n-Vbin/libtbx.git_avoid_merges\n+Vbin/libtbx.valgrind\n p1326\n sbg0\n (g17\n g2\n Ntp1327\n Rp1328\n (dp1329\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/git_avoid_merges.py\n+Vlib/python3/dist-packages/libtbx/command_line/valgrind.sh\n p1330\n sbsg0\n (g17\n g2\n Ntp1331\n Rp1332\n (dp1333\n g21\n g23\n sg26\n-Vbin/libtbx.valgrind\n+Vbin/libtbx.create_windows_exe\n p1334\n sbg0\n (g17\n g2\n Ntp1335\n Rp1336\n (dp1337\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/valgrind.sh\n+Vlib/python3/dist-packages/libtbx/command_line/create_windows_exe.py\n p1338\n sbsg0\n (g17\n g2\n Ntp1339\n Rp1340\n (dp1341\n g21\n g23\n sg26\n-Vbin/libtbx.help\n+Vbin/libtbx.pdflatex\n p1342\n sbg0\n (g17\n g2\n Ntp1343\n Rp1344\n (dp1345\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/help.py\n+Vlib/python3/dist-packages/libtbx/command_line/pdflatex.sh\n p1346\n sbsg0\n (g17\n g2\n Ntp1347\n Rp1348\n (dp1349\n g21\n g23\n sg26\n-Vbin/libtbx.easy_qsub\n+Vbin/libtbx.bundle_as_selfx\n p1350\n sbg0\n (g17\n g2\n Ntp1351\n Rp1352\n (dp1353\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/libtbx/command_line/easy_qsub.py\n+Vlib/python3/dist-packages/libtbx/command_line/bundle_as_selfx.csh\n p1354\n sbsg0\n (g17\n g2\n Ntp1355\n Rp1356\n (dp1357\n g21\n g23\n 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p1606\n sbg0\n (g17\n g2\n Ntp1607\n Rp1608\n (dp1609\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/double_overflow.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/lcm.py\n p1610\n sbsg0\n (g17\n g2\n Ntp1611\n Rp1612\n (dp1613\n g21\n g23\n sg26\n-Vbin/boost_adaptbx.segmentation_fault\n+Vbin/boost_adaptbx.show_platform_info\n p1614\n sbg0\n (g17\n g2\n Ntp1615\n Rp1616\n (dp1617\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/segmentation_fault.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/show_platform_info.py\n p1618\n sbsg0\n (g17\n g2\n Ntp1619\n Rp1620\n (dp1621\n g21\n g23\n sg26\n-Vbin/boost_adaptbx.nested_cpp_loops_with_check_signals\n+Vbin/boost_adaptbx.inexact\n p1622\n sbg0\n (g17\n g2\n Ntp1623\n Rp1624\n (dp1625\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/inexact.py\n p1626\n sbsg0\n (g17\n g2\n Ntp1627\n Rp1628\n (dp1629\n g21\n g23\n sg26\n-Vbin/boost_adaptbx.show_environ_usage\n+Vbin/boost_adaptbx.double_overflow\n p1630\n sbg0\n (g17\n g2\n Ntp1631\n Rp1632\n (dp1633\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/show_environ_usage.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/double_overflow.py\n p1634\n sbsg0\n (g17\n g2\n Ntp1635\n Rp1636\n (dp1637\n g21\n g23\n sg26\n-Vbin/boost_adaptbx.int_overflow\n+Vbin/boost_adaptbx.divide_by_zero\n p1638\n sbg0\n (g17\n g2\n Ntp1639\n Rp1640\n (dp1641\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/boost_adaptbx/command_line/int_overflow.py\n+Vlib/python3/dist-packages/boost_adaptbx/command_line/divide_by_zero.py\n p1642\n sbsg0\n (g17\n g2\n Ntp1643\n Rp1644\n (dp1645\n g21\n g23\n sg26\n-Vbin/fable.read\n+Vbin/fable.fem_include_search_paths\n p1646\n sbg0\n (g17\n g2\n Ntp1647\n Rp1648\n (dp1649\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/fable/command_line/read.py\n+Vlib/python3/dist-packages/fable/command_line/fem_include_search_paths.py\n p1650\n sbsg0\n (g17\n g2\n Ntp1651\n Rp1652\n (dp1653\n g21\n g23\n sg26\n-Vbin/fable.cout\n+Vbin/fable.split\n p1654\n sbg0\n (g17\n g2\n Ntp1655\n Rp1656\n (dp1657\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/fable/command_line/cout.py\n+Vlib/python3/dist-packages/fable/command_line/split.py\n p1658\n sbsg0\n (g17\n g2\n Ntp1659\n Rp1660\n (dp1661\n g21\n g23\n sg26\n-Vbin/fable.split\n+Vbin/fable.insert_write_at_start_of_each_procedure\n p1662\n sbg0\n (g17\n g2\n Ntp1663\n Rp1664\n (dp1665\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/fable/command_line/split.py\n+Vlib/python3/dist-packages/fable/command_line/insert_write_at_start_of_each_procedure.py\n p1666\n sbsg0\n (g17\n g2\n Ntp1667\n Rp1668\n (dp1669\n g21\n g23\n sg26\n-Vbin/fable.fem_include_search_paths\n+Vbin/fable.cout\n p1670\n sbg0\n (g17\n g2\n Ntp1671\n Rp1672\n (dp1673\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/fable/command_line/fem_include_search_paths.py\n+Vlib/python3/dist-packages/fable/command_line/cout.py\n p1674\n sbsg0\n (g17\n g2\n Ntp1675\n Rp1676\n (dp1677\n g21\n g23\n sg26\n-Vbin/fable.insert_write_at_start_of_each_procedure\n+Vbin/fable.read\n p1678\n sbg0\n (g17\n g2\n Ntp1679\n Rp1680\n (dp1681\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/fable/command_line/insert_write_at_start_of_each_procedure.py\n+Vlib/python3/dist-packages/fable/command_line/read.py\n p1682\n sbsg0\n (g17\n g2\n Ntp1683\n Rp1684\n (dp1685\n@@ -4573,136 +4573,136 @@\n g2\n Ntp1691\n Rp1692\n (dp1693\n g21\n g23\n sg26\n-Vbin/scitbx.show_sizes\n+Vbin/scitbx.histogram\n p1694\n sbg0\n (g17\n g2\n Ntp1695\n Rp1696\n (dp1697\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/scitbx/command_line/show_sizes.py\n+Vlib/python3/dist-packages/scitbx/command_line/histogram.py\n p1698\n sbsg0\n (g17\n g2\n Ntp1699\n Rp1700\n (dp1701\n g21\n g23\n sg26\n-Vbin/scitbx.apply_tapenade_hints\n+Vbin/scitbx.show_exp_times\n p1702\n sbg0\n (g17\n g2\n Ntp1703\n Rp1704\n (dp1705\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/scitbx/command_line/apply_tapenade_hints.py\n+Vlib/python3/dist-packages/scitbx/command_line/show_exp_times.py\n p1706\n sbsg0\n (g17\n g2\n Ntp1707\n Rp1708\n (dp1709\n g21\n g23\n sg26\n-Vbin/scitbx.show_exp_times\n+Vbin/scitbx.unicode_examples\n p1710\n sbg0\n (g17\n g2\n Ntp1711\n Rp1712\n (dp1713\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/scitbx/command_line/show_exp_times.py\n+Vlib/python3/dist-packages/scitbx/command_line/unicode_examples.py\n p1714\n sbsg0\n (g17\n g2\n Ntp1715\n Rp1716\n (dp1717\n g21\n g23\n sg26\n-Vbin/scitbx.generate_error_h\n+Vbin/scitbx.apply_tapenade_hints\n p1718\n sbg0\n (g17\n g2\n Ntp1719\n Rp1720\n (dp1721\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/scitbx/command_line/generate_error_h.py\n+Vlib/python3/dist-packages/scitbx/command_line/apply_tapenade_hints.py\n p1722\n sbsg0\n (g17\n g2\n Ntp1723\n Rp1724\n (dp1725\n g21\n g23\n sg26\n-Vbin/scitbx.histogram\n+Vbin/scitbx.show_sizes\n p1726\n sbg0\n (g17\n g2\n Ntp1727\n Rp1728\n (dp1729\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/scitbx/command_line/histogram.py\n+Vlib/python3/dist-packages/scitbx/command_line/show_sizes.py\n p1730\n sbsg0\n (g17\n g2\n Ntp1731\n Rp1732\n (dp1733\n g21\n g23\n sg26\n-Vbin/scitbx.unicode_examples\n+Vbin/scitbx.generate_error_h\n p1734\n sbg0\n (g17\n g2\n Ntp1735\n Rp1736\n (dp1737\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/scitbx/command_line/unicode_examples.py\n+Vlib/python3/dist-packages/scitbx/command_line/generate_error_h.py\n p1738\n sbsg0\n (g17\n g2\n Ntp1739\n Rp1740\n (dp1741\n@@ -4727,136 +4727,136 @@\n g2\n Ntp1747\n Rp1748\n (dp1749\n g21\n g23\n sg26\n-Vbin/cctbx.cod_select_and_pickle\n+Vbin/samosa.join\n p1750\n sbg0\n (g17\n g2\n Ntp1751\n Rp1752\n (dp1753\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/cod_select_and_pickle.py\n+Vlib/python3/dist-packages/cctbx/command_line/samosa_join.py\n p1754\n sbsg0\n (g17\n g2\n Ntp1755\n Rp1756\n (dp1757\n g21\n g23\n sg26\n-Vbin/cctbx.precession_view\n+Vbin/cctbx.cod_select_and_pickle\n p1758\n sbg0\n (g17\n g2\n Ntp1759\n Rp1760\n (dp1761\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/precession_view.py\n+Vlib/python3/dist-packages/cctbx/command_line/cod_select_and_pickle.py\n p1762\n sbsg0\n (g17\n g2\n Ntp1763\n Rp1764\n (dp1765\n g21\n g23\n sg26\n-Vbin/samosa.join\n+Vbin/cctbx.subgroups\n p1766\n sbg0\n (g17\n g2\n Ntp1767\n Rp1768\n (dp1769\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/samosa_join.py\n+Vlib/python3/dist-packages/cctbx/command_line/subgroups.py\n p1770\n sbsg0\n (g17\n g2\n Ntp1771\n Rp1772\n (dp1773\n g21\n g23\n sg26\n-Vbin/cctbx.version\n+Vbin/phenix.form_factor_query\n p1774\n sbg0\n (g17\n g2\n Ntp1775\n Rp1776\n (dp1777\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/version.py\n+Vlib/python3/dist-packages/cctbx/command_line/form_factor_query.py\n p1778\n sbsg0\n (g17\n g2\n Ntp1779\n Rp1780\n (dp1781\n g21\n g23\n sg26\n-Vbin/cctbx.wavelength_units\n+Vbin/mmtbx.development.qscore\n p1782\n sbg0\n (g17\n g2\n Ntp1783\n Rp1784\n (dp1785\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/wavelength_units.py\n+Vlib/python3/dist-packages/cctbx/command_line/qscore.py\n p1786\n sbsg0\n (g17\n g2\n Ntp1787\n Rp1788\n (dp1789\n g21\n g23\n sg26\n-Vbin/phenix.segment_and_split_map\n+Vbin/cctbx.precession_view\n p1790\n sbg0\n (g17\n g2\n Ntp1791\n Rp1792\n (dp1793\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/segment_and_split_map.py\n+Vlib/python3/dist-packages/cctbx/command_line/precession_view.py\n p1794\n sbsg0\n (g17\n g2\n Ntp1795\n Rp1796\n (dp1797\n@@ -4881,367 +4881,367 @@\n g2\n Ntp1803\n Rp1804\n (dp1805\n g21\n g23\n sg26\n-Vbin/cctbx.subgroups\n+Vbin/samosa.scale\n p1806\n sbg0\n (g17\n g2\n Ntp1807\n Rp1808\n (dp1809\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/subgroups.py\n+Vlib/python3/dist-packages/cctbx/command_line/samosa_scale.py\n p1810\n sbsg0\n (g17\n g2\n Ntp1811\n Rp1812\n (dp1813\n g21\n g23\n sg26\n-Vbin/cctbx.structure_factor_timings\n+Vbin/phenix.auto_sharpen\n p1814\n sbg0\n (g17\n g2\n Ntp1815\n Rp1816\n (dp1817\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/structure_factor_timings.py\n+Vlib/python3/dist-packages/cctbx/command_line/auto_sharpen.py\n p1818\n sbsg0\n (g17\n g2\n Ntp1819\n Rp1820\n (dp1821\n g21\n g23\n sg26\n-Vbin/phenix.find_reticular_twin_laws\n+Vbin/cctbx.structure_factor_timings\n p1822\n sbg0\n (g17\n g2\n Ntp1823\n Rp1824\n (dp1825\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/find_reticular_twin_laws.py\n+Vlib/python3/dist-packages/cctbx/command_line/structure_factor_timings.py\n p1826\n sbsg0\n (g17\n g2\n Ntp1827\n Rp1828\n (dp1829\n g21\n g23\n sg26\n-Vbin/phenix.form_factor_query\n+Vbin/cctbx.version\n p1830\n sbg0\n (g17\n g2\n Ntp1831\n Rp1832\n (dp1833\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/form_factor_query.py\n+Vlib/python3/dist-packages/cctbx/command_line/version.py\n p1834\n sbsg0\n (g17\n g2\n Ntp1835\n Rp1836\n (dp1837\n g21\n g23\n sg26\n-Vbin/phenix.auto_sharpen\n+Vbin/cctbx.eltbx.show_fp_fdp\n p1838\n sbg0\n (g17\n g2\n Ntp1839\n Rp1840\n (dp1841\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/auto_sharpen.py\n+Vlib/python3/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py\n p1842\n sbsg0\n (g17\n g2\n Ntp1843\n Rp1844\n (dp1845\n g21\n g23\n sg26\n-Vbin/phenix.diffuse\n+Vbin/phenix.find_reticular_twin_laws\n p1846\n sbg0\n (g17\n g2\n Ntp1847\n Rp1848\n (dp1849\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/diffuse.py\n+Vlib/python3/dist-packages/cctbx/command_line/find_reticular_twin_laws.py\n p1850\n sbsg0\n (g17\n g2\n Ntp1851\n Rp1852\n (dp1853\n g21\n g23\n sg26\n-Vbin/cctbx.euclidean_model_matching\n+Vbin/cctbx_regression.test_nightly\n p1854\n sbg0\n (g17\n g2\n Ntp1855\n Rp1856\n (dp1857\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/euclidean_model_matching.py\n+Vlib/python3/dist-packages/cctbx/command_line/cctbx_test_nightly.py\n p1858\n sbsg0\n (g17\n g2\n Ntp1859\n Rp1860\n (dp1861\n g21\n g23\n sg26\n-Vbin/samosa.scale\n+Vbin/cctbx.space_group_info\n p1862\n sbg0\n (g17\n g2\n Ntp1863\n Rp1864\n (dp1865\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/samosa_scale.py\n+Vlib/python3/dist-packages/cctbx/command_line/space_group_info.py\n p1866\n sbsg0\n (g17\n g2\n Ntp1867\n Rp1868\n (dp1869\n g21\n g23\n sg26\n-Vbin/cctbx_regression.test_nightly\n+Vbin/cctbx.euclidean_model_matching\n p1870\n sbg0\n (g17\n g2\n Ntp1871\n Rp1872\n (dp1873\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/cctbx_test_nightly.py\n+Vlib/python3/dist-packages/cctbx/command_line/euclidean_model_matching.py\n p1874\n sbsg0\n (g17\n g2\n Ntp1875\n Rp1876\n (dp1877\n g21\n g23\n sg26\n-Vbin/cctbx.space_group_info\n+Vbin/cctbx.wavelength_units\n p1878\n sbg0\n (g17\n g2\n Ntp1879\n Rp1880\n (dp1881\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/space_group_info.py\n+Vlib/python3/dist-packages/cctbx/command_line/wavelength_units.py\n p1882\n sbsg0\n (g17\n g2\n Ntp1883\n Rp1884\n (dp1885\n g21\n g23\n sg26\n-Vbin/cctbx.eltbx.show_fp_fdp\n+Vbin/phenix.diffuse\n p1886\n sbg0\n (g17\n g2\n Ntp1887\n Rp1888\n (dp1889\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py\n+Vlib/python3/dist-packages/cctbx/command_line/diffuse.py\n p1890\n sbsg0\n (g17\n g2\n Ntp1891\n Rp1892\n (dp1893\n g21\n g23\n sg26\n-Vbin/cctbx.web.install\n+Vbin/phenix.segment_and_split_map\n p1894\n sbg0\n (g17\n g2\n Ntp1895\n Rp1896\n (dp1897\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/web.install.csh\n+Vlib/python3/dist-packages/cctbx/command_line/segment_and_split_map.py\n p1898\n sbsg0\n (g17\n g2\n Ntp1899\n Rp1900\n (dp1901\n g21\n g23\n sg26\n-Vbin/mmtbx.development.qscore\n+Vbin/cctbx.web.install\n p1902\n sbg0\n (g17\n g2\n Ntp1903\n Rp1904\n (dp1905\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/cctbx/command_line/qscore.py\n+Vlib/python3/dist-packages/cctbx/command_line/web.install.csh\n p1906\n sbsg0\n (g17\n g2\n Ntp1907\n Rp1908\n (dp1909\n g21\n g23\n sg26\n-Vbin/phenix.data_viewer\n+Vbin/crys3d.model_viewer\n p1910\n sbg0\n (g17\n g2\n Ntp1911\n Rp1912\n (dp1913\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/hklview.py\n+Vlib/python3/dist-packages/crys3d/command_line/model_viewer.py\n p1914\n sbsg0\n (g17\n g2\n Ntp1915\n Rp1916\n (dp1917\n g21\n g23\n sg26\n-Vbin/cctbx.data_viewer\n+Vbin/crys3d.qttbx.view_structure\n p1918\n sbg0\n (g17\n g2\n Ntp1919\n Rp1920\n (dp1921\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/hklview.py\n+Vlib/python3/dist-packages/crys3d/command_line/qttbx.view_structure.py\n p1922\n sbsg0\n (g17\n g2\n Ntp1923\n Rp1924\n (dp1925\n g21\n g23\n sg26\n-Vbin/cctbx.visualize_r_factors\n+Vbin/phenix.HKLviewer\n p1926\n sbg0\n (g17\n g2\n Ntp1927\n Rp1928\n (dp1929\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/visualize_r_factors.py\n+Vlib/python3/dist-packages/crys3d/command_line/HKLviewer.py\n p1930\n sbsg0\n (g17\n g2\n Ntp1931\n Rp1932\n (dp1933\n g21\n g23\n sg26\n-Vbin/phenix.HKLviewer\n+Vbin/cctbx.HKLviewer\n p1934\n sbg0\n (g17\n g2\n Ntp1935\n Rp1936\n (dp1937\n@@ -5255,15 +5255,15 @@\n g2\n Ntp1939\n Rp1940\n (dp1941\n g21\n g23\n sg26\n-Vbin/cctbx.HKLviewer\n+Vbin/phasertng.HKLviewer\n p1942\n sbg0\n (g17\n g2\n Ntp1943\n Rp1944\n (dp1945\n@@ -5277,268 +5277,268 @@\n g2\n Ntp1947\n Rp1948\n (dp1949\n g21\n g23\n sg26\n-Vbin/phasertng.HKLviewer\n+Vbin/cctbx.multiplicity_viewer\n p1950\n sbg0\n (g17\n g2\n Ntp1951\n Rp1952\n (dp1953\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/HKLviewer.py\n+Vlib/python3/dist-packages/crys3d/command_line/multiplicity_viewer.py\n p1954\n sbsg0\n (g17\n g2\n Ntp1955\n Rp1956\n (dp1957\n g21\n g23\n sg26\n-Vbin/cctbx.make_install_HKLviewer_ChimeraX\n+Vbin/phenix.HKLinfo\n p1958\n sbg0\n (g17\n g2\n Ntp1959\n Rp1960\n (dp1961\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/make_install_HKLviewer_ChimeraX.py\n+Vlib/python3/dist-packages/crys3d/command_line/HKLinfo.py\n p1962\n sbsg0\n (g17\n g2\n Ntp1963\n Rp1964\n (dp1965\n g21\n g23\n sg26\n-Vbin/phenix.compare_datasets\n+Vbin/cctbx.HKLinfo\n p1966\n sbg0\n (g17\n g2\n Ntp1967\n Rp1968\n (dp1969\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/compare_datasets.py\n+Vlib/python3/dist-packages/crys3d/command_line/HKLinfo.py\n p1970\n sbsg0\n (g17\n g2\n Ntp1971\n Rp1972\n (dp1973\n g21\n g23\n sg26\n-Vbin/cctbx.multiplicity_viewer\n+Vbin/cctbx.make_install_HKLviewer_ChimeraX\n p1974\n sbg0\n (g17\n g2\n Ntp1975\n Rp1976\n (dp1977\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/multiplicity_viewer.py\n+Vlib/python3/dist-packages/crys3d/command_line/make_install_HKLviewer_ChimeraX.py\n p1978\n sbsg0\n (g17\n g2\n Ntp1979\n Rp1980\n (dp1981\n g21\n g23\n sg26\n-Vbin/crys3d.qttbx.view_structure\n+Vbin/cctbx.visualize_r_factors\n p1982\n sbg0\n (g17\n g2\n Ntp1983\n Rp1984\n (dp1985\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/qttbx.view_structure.py\n+Vlib/python3/dist-packages/crys3d/command_line/visualize_r_factors.py\n p1986\n sbsg0\n (g17\n g2\n Ntp1987\n Rp1988\n (dp1989\n g21\n g23\n sg26\n-Vbin/crys3d.model_viewer\n+Vbin/phenix.data_viewer\n p1990\n sbg0\n (g17\n g2\n Ntp1991\n Rp1992\n (dp1993\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/model_viewer.py\n+Vlib/python3/dist-packages/crys3d/command_line/hklview.py\n p1994\n sbsg0\n (g17\n g2\n Ntp1995\n Rp1996\n (dp1997\n g21\n g23\n sg26\n-Vbin/phenix.HKLinfo\n+Vbin/cctbx.data_viewer\n p1998\n sbg0\n (g17\n g2\n Ntp1999\n Rp2000\n (dp2001\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/HKLinfo.py\n+Vlib/python3/dist-packages/crys3d/command_line/hklview.py\n p2002\n sbsg0\n (g17\n g2\n Ntp2003\n Rp2004\n (dp2005\n g21\n g23\n sg26\n-Vbin/cctbx.HKLinfo\n+Vbin/phenix.compare_datasets\n p2006\n sbg0\n (g17\n g2\n Ntp2007\n Rp2008\n (dp2009\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/crys3d/command_line/HKLinfo.py\n+Vlib/python3/dist-packages/crys3d/command_line/compare_datasets.py\n p2010\n sbsg0\n (g17\n g2\n Ntp2011\n Rp2012\n (dp2013\n g21\n g23\n sg26\n-Vbin/smtbx.masks\n+Vbin/smtbx.absolute_structure\n p2014\n sbg0\n (g17\n g2\n Ntp2015\n Rp2016\n (dp2017\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/smtbx/command_line/masks.py\n+Vlib/python3/dist-packages/smtbx/command_line/absolute_structure.py\n p2018\n sbsg0\n (g17\n g2\n Ntp2019\n Rp2020\n (dp2021\n g21\n g23\n sg26\n-Vbin/smtbx.anom_refine\n+Vbin/smtbx.masks\n p2022\n sbg0\n (g17\n g2\n Ntp2023\n Rp2024\n (dp2025\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/smtbx/command_line/anom_refine.py\n+Vlib/python3/dist-packages/smtbx/command_line/masks.py\n p2026\n sbsg0\n (g17\n g2\n Ntp2027\n Rp2028\n (dp2029\n g21\n g23\n sg26\n-Vbin/smtbx.refine\n+Vbin/smtbx.anom_refine\n p2030\n sbg0\n (g17\n g2\n Ntp2031\n Rp2032\n (dp2033\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/smtbx/command_line/refine.py\n+Vlib/python3/dist-packages/smtbx/command_line/anom_refine.py\n p2034\n sbsg0\n (g17\n g2\n Ntp2035\n Rp2036\n (dp2037\n g21\n g23\n sg26\n-Vbin/smtbx.absolute_structure\n+Vbin/smtbx.refine\n p2038\n sbg0\n (g17\n g2\n Ntp2039\n Rp2040\n (dp2041\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/smtbx/command_line/absolute_structure.py\n+Vlib/python3/dist-packages/smtbx/command_line/refine.py\n p2042\n sbsg0\n (g17\n g2\n Ntp2043\n Rp2044\n (dp2045\n@@ -5563,1764 +5563,1764 @@\n g2\n Ntp2051\n Rp2052\n (dp2053\n g21\n g23\n sg26\n-Vbin/phenix.merging_statistics\n+Vbin/iotbx.pdb.box_around_molecule\n p2054\n sbg0\n (g17\n g2\n Ntp2055\n Rp2056\n (dp2057\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/merging_statistics.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.box_around_molecule.py\n p2058\n sbsg0\n (g17\n g2\n Ntp2059\n Rp2060\n (dp2061\n g21\n g23\n sg26\n-Vbin/iotbx.merging_statistics\n+Vbin/iotbx.r_free_flags_completion_simple\n p2062\n sbg0\n (g17\n g2\n Ntp2063\n Rp2064\n (dp2065\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/merging_statistics.py\n+Vlib/python3/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py\n p2066\n sbsg0\n (g17\n g2\n Ntp2067\n Rp2068\n (dp2069\n g21\n g23\n sg26\n-Vbin/iotbx.cif.as_miller_arrays\n+Vbin/phenix.emma\n p2070\n sbg0\n (g17\n g2\n Ntp2071\n Rp2072\n (dp2073\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cif.as_miller_arrays.py\n+Vlib/python3/dist-packages/iotbx/command_line/emma.py\n p2074\n sbsg0\n (g17\n g2\n Ntp2075\n Rp2076\n (dp2077\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.get_citation\n+Vbin/iotbx.emma\n p2078\n sbg0\n (g17\n g2\n Ntp2079\n Rp2080\n (dp2081\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_get_citation.py\n+Vlib/python3/dist-packages/iotbx/command_line/emma.py\n p2082\n sbsg0\n (g17\n g2\n Ntp2083\n Rp2084\n (dp2085\n g21\n g23\n sg26\n-Vbin/cctbx.patterson_map\n+Vbin/iotbx.cif.as_miller_arrays\n p2086\n sbg0\n (g17\n g2\n Ntp2087\n Rp2088\n (dp2089\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/patterson_map.py\n+Vlib/python3/dist-packages/iotbx/command_line/cif.as_miller_arrays.py\n p2090\n sbsg0\n (g17\n g2\n Ntp2091\n Rp2092\n (dp2093\n g21\n g23\n sg26\n-Vbin/iotbx.xplor.map.show_summary\n+Vbin/iotbx.poscar_as_xray_structure\n p2094\n sbg0\n (g17\n g2\n Ntp2095\n Rp2096\n (dp2097\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/xplor.map.show_summary.py\n+Vlib/python3/dist-packages/iotbx/command_line/poscar_as_xray_structure.py\n p2098\n sbsg0\n (g17\n g2\n Ntp2099\n Rp2100\n (dp2101\n g21\n g23\n sg26\n-Vbin/phenix.emma\n+Vbin/cctbx.show_systematic_absences\n p2102\n sbg0\n (g17\n g2\n Ntp2103\n Rp2104\n (dp2105\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/emma.py\n+Vlib/python3/dist-packages/iotbx/command_line/show_systematic_absences.py\n p2106\n sbsg0\n (g17\n g2\n Ntp2107\n Rp2108\n (dp2109\n g21\n g23\n sg26\n-Vbin/iotbx.emma\n+Vbin/iotbx.dano_as_amplitudes\n p2110\n sbg0\n (g17\n g2\n Ntp2111\n Rp2112\n (dp2113\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/emma.py\n+Vlib/python3/dist-packages/iotbx/command_line/dano_as_amplitudes.py\n p2114\n sbsg0\n (g17\n g2\n Ntp2115\n Rp2116\n (dp2117\n g21\n g23\n sg26\n-Vbin/phenix.resolution\n+Vbin/iotbx.pdb.add_conformations\n p2118\n sbg0\n (g17\n g2\n Ntp2119\n Rp2120\n (dp2121\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/effective_resolution.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_add_conformations.py\n p2122\n sbsg0\n (g17\n g2\n Ntp2123\n Rp2124\n (dp2125\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.superpose_atoms_by_name\n+Vbin/phenix.pdb.biomt_reconstruction\n p2126\n sbg0\n (g17\n g2\n Ntp2127\n Rp2128\n (dp2129\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py\n+Vlib/python3/dist-packages/iotbx/command_line/biomt_reconstruction.py\n p2130\n sbsg0\n (g17\n g2\n Ntp2131\n Rp2132\n (dp2133\n g21\n g23\n sg26\n-Vbin/phenix.reflection_statistics\n+Vbin/iotbx.file_reader\n p2134\n sbg0\n (g17\n g2\n Ntp2135\n Rp2136\n (dp2137\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/reflection_statistics.py\n+Vlib/python3/dist-packages/iotbx/command_line/file_reader.py\n p2138\n sbsg0\n (g17\n g2\n Ntp2139\n Rp2140\n (dp2141\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.insert_scale_records\n+Vbin/phenix.mtz_as_cif\n p2142\n sbg0\n (g17\n g2\n Ntp2143\n Rp2144\n (dp2145\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.insert_scale_records.py\n+Vlib/python3/dist-packages/iotbx/command_line/mtz_as_cif.py\n p2146\n sbsg0\n (g17\n g2\n Ntp2147\n Rp2148\n (dp2149\n g21\n g23\n sg26\n-Vbin/iotbx.cif.as_xray_structure\n+Vbin/iotbx.symmetry_search\n p2150\n sbg0\n (g17\n g2\n Ntp2151\n Rp2152\n (dp2153\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cif.as_xray_structure.py\n+Vlib/python3/dist-packages/iotbx/command_line/symmetry_search.py\n p2154\n sbsg0\n (g17\n g2\n Ntp2155\n Rp2156\n (dp2157\n g21\n g23\n sg26\n-Vbin/phenix.pdb_cif_conversion\n+Vbin/iotbx.get_pubmed_citation\n p2158\n sbg0\n (g17\n g2\n Ntp2159\n Rp2160\n (dp2161\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_cif_conversion.py\n+Vlib/python3/dist-packages/iotbx/command_line/get_pubmed_citation.py\n p2162\n sbsg0\n (g17\n g2\n Ntp2163\n Rp2164\n (dp2165\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.link_as_geometry_restraints_edits\n+Vbin/iotbx.shelx.as_cif\n p2166\n sbg0\n (g17\n g2\n Ntp2167\n Rp2168\n (dp2169\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py\n+Vlib/python3/dist-packages/iotbx/command_line/shelx.as_cif.py\n p2170\n sbsg0\n (g17\n g2\n Ntp2171\n Rp2172\n (dp2173\n g21\n g23\n sg26\n-Vbin/phenix.mtz.dump\n+Vbin/phenix.merging_statistics\n p2174\n sbg0\n (g17\n g2\n Ntp2175\n Rp2176\n (dp2177\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/mtz.dump.py\n+Vlib/python3/dist-packages/iotbx/command_line/merging_statistics.py\n p2178\n sbsg0\n (g17\n g2\n Ntp2179\n Rp2180\n (dp2181\n g21\n g23\n sg26\n-Vbin/iotbx.mtz.dump\n+Vbin/iotbx.merging_statistics\n p2182\n sbg0\n (g17\n g2\n Ntp2183\n Rp2184\n (dp2185\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/mtz.dump.py\n+Vlib/python3/dist-packages/iotbx/command_line/merging_statistics.py\n p2186\n sbsg0\n (g17\n g2\n Ntp2187\n Rp2188\n (dp2189\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.box_around_molecule\n+Vbin/iotbx.pdb.superpose_centers_of_mass\n p2190\n sbg0\n (g17\n g2\n Ntp2191\n Rp2192\n (dp2193\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.box_around_molecule.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py\n p2194\n sbsg0\n (g17\n g2\n Ntp2195\n Rp2196\n (dp2197\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.superpose_centers_of_mass\n+Vbin/phenix.pdb.b_factor_stats\n p2198\n sbg0\n (g17\n g2\n Ntp2199\n Rp2200\n (dp2201\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.b_factor_stats.py\n p2202\n sbsg0\n (g17\n g2\n Ntp2203\n Rp2204\n (dp2205\n g21\n g23\n sg26\n-Vbin/phenix.cns_as_mtz\n+Vbin/phenix.explore_metric_symmetry\n p2206\n sbg0\n (g17\n g2\n Ntp2207\n Rp2208\n (dp2209\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cns_as_mtz.py\n+Vlib/python3/dist-packages/iotbx/command_line/explore_metric_symmetry.py\n p2210\n sbsg0\n (g17\n g2\n Ntp2211\n Rp2212\n (dp2213\n g21\n g23\n sg26\n-Vbin/iotbx.shelx.dump_as_python\n+Vbin/iotbx.unique_with_biomt\n p2214\n sbg0\n (g17\n g2\n Ntp2215\n Rp2216\n (dp2217\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/shelx.dump_as_python.py\n+Vlib/python3/dist-packages/iotbx/command_line/unique_with_biomt.py\n p2218\n sbsg0\n (g17\n g2\n Ntp2219\n Rp2220\n (dp2221\n g21\n g23\n sg26\n-Vbin/iotbx.cns.reflection_reader\n+Vbin/phenix.unique_with_biomt\n p2222\n sbg0\n (g17\n g2\n Ntp2223\n Rp2224\n (dp2225\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cns.reflection_reader.py\n+Vlib/python3/dist-packages/iotbx/command_line/unique_with_biomt.py\n p2226\n sbsg0\n (g17\n g2\n Ntp2227\n Rp2228\n (dp2229\n g21\n g23\n sg26\n-Vbin/phenix.pdb.hierarchy\n+Vbin/iotbx.pdb.as_xray_structure\n p2230\n sbg0\n (g17\n g2\n Ntp2231\n Rp2232\n (dp2233\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.hierarchy.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.as_xray_structure.py\n p2234\n sbsg0\n (g17\n g2\n Ntp2235\n Rp2236\n (dp2237\n g21\n g23\n sg26\n-Vbin/cctbx.show_systematic_absences\n+Vbin/phenix.pdb.mtrix_reconstruction\n p2238\n sbg0\n (g17\n g2\n Ntp2239\n Rp2240\n (dp2241\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/show_systematic_absences.py\n+Vlib/python3/dist-packages/iotbx/command_line/mtrix_reconstruction.py\n p2242\n sbsg0\n (g17\n g2\n Ntp2243\n Rp2244\n (dp2245\n g21\n g23\n sg26\n-Vbin/iotbx.r_free_flags_completion_simple\n+Vbin/iotbx.pdb.superpose_atoms_by_name\n p2246\n sbg0\n (g17\n g2\n Ntp2247\n Rp2248\n (dp2249\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py\n p2250\n sbsg0\n (g17\n g2\n Ntp2251\n Rp2252\n (dp2253\n g21\n g23\n sg26\n-Vbin/iotbx.shelx.as_xray_structure\n+Vbin/iotbx.blast_pdb\n p2254\n sbg0\n (g17\n g2\n Ntp2255\n Rp2256\n (dp2257\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/shelx.as_xray_structure.py\n+Vlib/python3/dist-packages/iotbx/command_line/blast_pdb.py\n p2258\n sbsg0\n (g17\n g2\n Ntp2259\n Rp2260\n (dp2261\n g21\n g23\n sg26\n-Vbin/iotbx.poscar_as_xray_structure\n+Vbin/iotbx.reflection_file_reader\n p2262\n sbg0\n (g17\n g2\n Ntp2263\n Rp2264\n (dp2265\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/poscar_as_xray_structure.py\n+Vlib/python3/dist-packages/iotbx/command_line/reflection_file_reader.py\n p2266\n sbsg0\n (g17\n g2\n Ntp2267\n Rp2268\n (dp2269\n g21\n g23\n sg26\n-Vbin/iotbx.export_scalepack_unmerged\n+Vbin/iotbx.pdb.sort_atoms\n p2270\n sbg0\n (g17\n g2\n Ntp2271\n Rp2272\n (dp2273\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/export_scalepack_unmerged.py\n+Vlib/python3/dist-packages/iotbx/command_line/sort_atoms.py\n p2274\n sbsg0\n (g17\n g2\n Ntp2275\n Rp2276\n (dp2277\n g21\n g23\n sg26\n-Vbin/phenix.reflection_file_converter\n+Vbin/phenix.csv_as_mtz\n p2278\n sbg0\n (g17\n g2\n Ntp2279\n Rp2280\n (dp2281\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/reflection_file_converter.py\n+Vlib/python3/dist-packages/iotbx/command_line/csv_as_mtz.py\n p2282\n sbsg0\n (g17\n g2\n Ntp2283\n Rp2284\n (dp2285\n g21\n g23\n sg26\n-Vbin/iotbx.reflection_file_converter\n+Vbin/iotbx.simple_map_coefficients\n p2286\n sbg0\n (g17\n g2\n Ntp2287\n Rp2288\n (dp2289\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/reflection_file_converter.py\n+Vlib/python3/dist-packages/iotbx/command_line/simple_map_coefficients.py\n p2290\n sbsg0\n (g17\n g2\n Ntp2291\n Rp2292\n (dp2293\n g21\n g23\n sg26\n-Vbin/phenix.csv_as_mtz\n+Vbin/iotbx.dtrek.to_cns\n p2294\n sbg0\n (g17\n g2\n Ntp2295\n Rp2296\n (dp2297\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/csv_as_mtz.py\n+Vlib/python3/dist-packages/iotbx/command_line/dtrek.to_cns.py\n p2298\n sbsg0\n (g17\n g2\n Ntp2299\n Rp2300\n (dp2301\n g21\n g23\n sg26\n-Vbin/iotbx.dano_as_amplitudes\n+Vbin/iotbx.cif.validate\n p2302\n sbg0\n (g17\n g2\n Ntp2303\n Rp2304\n (dp2305\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/dano_as_amplitudes.py\n+Vlib/python3/dist-packages/iotbx/command_line/cif.validate.py\n p2306\n sbsg0\n (g17\n g2\n Ntp2307\n Rp2308\n (dp2309\n g21\n g23\n sg26\n-Vbin/phenix.mtz_as_cif\n+Vbin/phenix.reflection_statistics\n p2310\n sbg0\n (g17\n g2\n Ntp2311\n Rp2312\n (dp2313\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/mtz_as_cif.py\n+Vlib/python3/dist-packages/iotbx/command_line/reflection_statistics.py\n p2314\n sbsg0\n (g17\n g2\n Ntp2315\n Rp2316\n (dp2317\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.join_fragment_files\n+Vbin/iotbx.pdb.show_connectivity\n p2318\n sbg0\n (g17\n g2\n Ntp2319\n Rp2320\n (dp2321\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.join_fragment_files.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_show_connectivity.py\n p2322\n sbsg0\n (g17\n g2\n Ntp2323\n Rp2324\n (dp2325\n g21\n g23\n sg26\n-Vbin/iotbx.phil\n+Vbin/phenix.pdb.hierarchy\n p2326\n sbg0\n (g17\n g2\n Ntp2327\n Rp2328\n (dp2329\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/phil.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.hierarchy.py\n p2330\n sbsg0\n (g17\n g2\n Ntp2331\n Rp2332\n (dp2333\n g21\n g23\n sg26\n-Vbin/labelit.png\n+Vbin/iotbx.pdb.join_fragment_files\n p2334\n sbg0\n (g17\n g2\n Ntp2335\n Rp2336\n (dp2337\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/detector_image_as_png.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.join_fragment_files.py\n p2338\n sbsg0\n (g17\n g2\n Ntp2339\n Rp2340\n (dp2341\n g21\n g23\n sg26\n-Vbin/phenix.cif_as_pdb\n+Vbin/iotbx.pdb_labels_diff\n p2342\n sbg0\n (g17\n g2\n Ntp2343\n Rp2344\n (dp2345\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cif_as_pdb.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_labels_diff.py\n p2346\n sbsg0\n (g17\n g2\n Ntp2347\n Rp2348\n (dp2349\n g21\n g23\n sg26\n-Vbin/iotbx.cif_as_pdb\n+Vbin/phenix.reindex\n p2350\n sbg0\n (g17\n g2\n Ntp2351\n Rp2352\n (dp2353\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cif_as_pdb.py\n+Vlib/python3/dist-packages/iotbx/command_line/reindex.py\n p2354\n sbsg0\n (g17\n g2\n Ntp2355\n Rp2356\n (dp2357\n g21\n g23\n sg26\n-Vbin/iotbx.lattice_symmetry\n+Vbin/iotbx.cns.transfer_crystal_symmetry\n p2358\n sbg0\n (g17\n g2\n Ntp2359\n Rp2360\n (dp2361\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/lattice_symmetry.py\n+Vlib/python3/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py\n p2362\n sbsg0\n (g17\n g2\n Ntp2363\n Rp2364\n (dp2365\n g21\n g23\n sg26\n-Vbin/iotbx.shelx.as_cif\n+Vbin/iotbx.r_free_flags_as_cns\n p2366\n sbg0\n (g17\n g2\n Ntp2367\n Rp2368\n (dp2369\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/shelx.as_cif.py\n+Vlib/python3/dist-packages/iotbx/command_line/r_free_flags_as_cns.py\n p2370\n sbsg0\n (g17\n g2\n Ntp2371\n Rp2372\n (dp2373\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.sort_atoms\n+Vbin/phenix.pdb_as_cif\n p2374\n sbg0\n (g17\n g2\n Ntp2375\n Rp2376\n (dp2377\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/sort_atoms.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_as_cif.py\n p2378\n sbsg0\n (g17\n g2\n Ntp2379\n Rp2380\n (dp2381\n g21\n g23\n sg26\n-Vbin/phenix.pdb.mtrix_reconstruction\n+Vbin/phenix.reflection_file_converter\n p2382\n sbg0\n (g17\n g2\n Ntp2383\n Rp2384\n (dp2385\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/mtrix_reconstruction.py\n+Vlib/python3/dist-packages/iotbx/command_line/reflection_file_converter.py\n p2386\n sbsg0\n (g17\n g2\n Ntp2387\n Rp2388\n (dp2389\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.print_sequence\n+Vbin/iotbx.reflection_file_converter\n p2390\n sbg0\n (g17\n g2\n Ntp2391\n Rp2392\n (dp2393\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.print_sequence.py\n+Vlib/python3/dist-packages/iotbx/command_line/reflection_file_converter.py\n p2394\n sbsg0\n (g17\n g2\n Ntp2395\n Rp2396\n (dp2397\n g21\n g23\n sg26\n-Vbin/phenix.explore_metric_symmetry\n+Vbin/iotbx.pdb_remediator\n p2398\n sbg0\n (g17\n g2\n Ntp2399\n Rp2400\n (dp2401\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/explore_metric_symmetry.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_remediator.py\n p2402\n sbsg0\n (g17\n g2\n Ntp2403\n Rp2404\n (dp2405\n g21\n g23\n sg26\n-Vbin/iotbx.reflection_file_reader\n+Vbin/iotbx.xplor.map.show_summary\n p2406\n sbg0\n (g17\n g2\n Ntp2407\n Rp2408\n (dp2409\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/reflection_file_reader.py\n+Vlib/python3/dist-packages/iotbx/command_line/xplor.map.show_summary.py\n p2410\n sbsg0\n (g17\n g2\n Ntp2411\n Rp2412\n (dp2413\n g21\n g23\n sg26\n-Vbin/iotbx.split_data_cif\n+Vbin/iotbx.pdb.insert_scale_records\n p2414\n sbg0\n (g17\n g2\n Ntp2415\n Rp2416\n (dp2417\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/split_data_cif.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.insert_scale_records.py\n p2418\n sbsg0\n (g17\n g2\n Ntp2419\n Rp2420\n (dp2421\n g21\n g23\n sg26\n-Vbin/iotbx.cbf_read\n+Vbin/phenix.resolution\n p2422\n sbg0\n (g17\n g2\n Ntp2423\n Rp2424\n (dp2425\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cbf_read.py\n+Vlib/python3/dist-packages/iotbx/command_line/effective_resolution.py\n p2426\n sbsg0\n (g17\n g2\n Ntp2427\n Rp2428\n (dp2429\n g21\n g23\n sg26\n-Vbin/phenix.french_wilson\n+Vbin/iotbx.cns.reflection_reader\n p2430\n sbg0\n (g17\n g2\n Ntp2431\n Rp2432\n (dp2433\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/french_wilson.py\n+Vlib/python3/dist-packages/iotbx/command_line/cns.reflection_reader.py\n p2434\n sbsg0\n (g17\n g2\n Ntp2435\n Rp2436\n (dp2437\n g21\n g23\n sg26\n-Vbin/iotbx.french_wilson\n+Vbin/iotbx.cbf_read\n p2438\n sbg0\n (g17\n g2\n Ntp2439\n Rp2440\n (dp2441\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/french_wilson.py\n+Vlib/python3/dist-packages/iotbx/command_line/cbf_read.py\n p2442\n sbsg0\n (g17\n g2\n Ntp2443\n Rp2444\n (dp2445\n g21\n g23\n sg26\n-Vbin/iotbx.r_free_flags_as_cns\n+Vbin/cctbx.patterson_map\n p2446\n sbg0\n (g17\n g2\n Ntp2447\n Rp2448\n (dp2449\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/r_free_flags_as_cns.py\n+Vlib/python3/dist-packages/iotbx/command_line/patterson_map.py\n p2450\n sbsg0\n (g17\n g2\n Ntp2451\n Rp2452\n (dp2453\n g21\n g23\n sg26\n-Vbin/phenix.reindex\n+Vbin/iotbx.phil\n p2454\n sbg0\n (g17\n g2\n Ntp2455\n Rp2456\n (dp2457\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/reindex.py\n+Vlib/python3/dist-packages/iotbx/command_line/phil.py\n p2458\n sbsg0\n (g17\n g2\n Ntp2459\n Rp2460\n (dp2461\n g21\n g23\n sg26\n-Vbin/iotbx.pdb_as_fasta\n+Vbin/iotbx.pdb_labels_comparison\n p2462\n sbg0\n (g17\n g2\n Ntp2463\n Rp2464\n (dp2465\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_as_fasta.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_labels_comparison.py\n p2466\n sbsg0\n (g17\n g2\n Ntp2467\n Rp2468\n (dp2469\n g21\n g23\n sg26\n-Vbin/phenix.pdb.b_factor_stats\n+Vbin/iotbx.show_distances\n p2470\n sbg0\n (g17\n g2\n Ntp2471\n Rp2472\n (dp2473\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.b_factor_stats.py\n+Vlib/python3/dist-packages/iotbx/command_line/show_distances.py\n p2474\n sbsg0\n (g17\n g2\n Ntp2475\n Rp2476\n (dp2477\n g21\n g23\n sg26\n-Vbin/iotbx.r_free_flags_accumulation\n+Vbin/phenix.cns_as_mtz\n p2478\n sbg0\n (g17\n g2\n Ntp2479\n Rp2480\n (dp2481\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/r_free_flags_accumulation.py\n+Vlib/python3/dist-packages/iotbx/command_line/cns_as_mtz.py\n p2482\n sbsg0\n (g17\n g2\n Ntp2483\n Rp2484\n (dp2485\n g21\n g23\n sg26\n-Vbin/iotbx.simple_map_coefficients\n+Vbin/phenix.pdb_cif_conversion\n p2486\n sbg0\n (g17\n g2\n Ntp2487\n Rp2488\n (dp2489\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/simple_map_coefficients.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_cif_conversion.py\n p2490\n sbsg0\n (g17\n g2\n Ntp2491\n Rp2492\n (dp2493\n g21\n g23\n sg26\n-Vbin/iotbx.cif.validate\n+Vbin/labelit.png\n p2494\n sbg0\n (g17\n g2\n Ntp2495\n Rp2496\n (dp2497\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cif.validate.py\n+Vlib/python3/dist-packages/iotbx/command_line/detector_image_as_png.py\n p2498\n sbsg0\n (g17\n g2\n Ntp2499\n Rp2500\n (dp2501\n g21\n g23\n sg26\n-Vbin/phenix.pdb.biomt_reconstruction\n+Vbin/iotbx.cif.as_xray_structure\n p2502\n sbg0\n (g17\n g2\n Ntp2503\n Rp2504\n (dp2505\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/biomt_reconstruction.py\n+Vlib/python3/dist-packages/iotbx/command_line/cif.as_xray_structure.py\n p2506\n sbsg0\n (g17\n g2\n Ntp2507\n Rp2508\n (dp2509\n g21\n g23\n sg26\n-Vbin/iotbx.dtrek.to_cns\n+Vbin/iotbx.pdb.split_models\n p2510\n sbg0\n (g17\n g2\n Ntp2511\n Rp2512\n (dp2513\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/dtrek.to_cns.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_split_models.py\n p2514\n sbsg0\n (g17\n g2\n Ntp2515\n Rp2516\n (dp2517\n g21\n g23\n sg26\n-Vbin/iotbx.blast_pdb\n+Vbin/phenix.cif_as_pdb\n p2518\n sbg0\n (g17\n g2\n Ntp2519\n Rp2520\n (dp2521\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/blast_pdb.py\n+Vlib/python3/dist-packages/iotbx/command_line/cif_as_pdb.py\n p2522\n sbsg0\n (g17\n g2\n Ntp2523\n Rp2524\n (dp2525\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.add_conformations\n+Vbin/iotbx.cif_as_pdb\n p2526\n sbg0\n (g17\n g2\n Ntp2527\n Rp2528\n (dp2529\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_add_conformations.py\n+Vlib/python3/dist-packages/iotbx/command_line/cif_as_pdb.py\n p2530\n sbsg0\n (g17\n g2\n Ntp2531\n Rp2532\n (dp2533\n g21\n g23\n sg26\n-Vbin/iotbx.crystal_symmetry_from_any\n+Vbin/iotbx.build_phil_cache\n p2534\n sbg0\n (g17\n g2\n Ntp2535\n Rp2536\n (dp2537\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py\n+Vlib/python3/dist-packages/iotbx/command_line/build_phil_cache.py\n p2538\n sbsg0\n (g17\n g2\n Ntp2539\n Rp2540\n (dp2541\n g21\n g23\n sg26\n-Vbin/iotbx.distance_least_squares\n+Vbin/iotbx.lattice_symmetry\n p2542\n sbg0\n (g17\n g2\n Ntp2543\n Rp2544\n (dp2545\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/distance_least_squares.py\n+Vlib/python3/dist-packages/iotbx/command_line/lattice_symmetry.py\n p2546\n sbsg0\n (g17\n g2\n Ntp2547\n Rp2548\n (dp2549\n g21\n g23\n sg26\n-Vbin/iotbx.cns.transfer_crystal_symmetry\n+Vbin/iotbx.crystal_symmetry_from_any\n p2550\n sbg0\n (g17\n g2\n Ntp2551\n Rp2552\n (dp2553\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py\n+Vlib/python3/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py\n p2554\n sbsg0\n (g17\n g2\n Ntp2555\n Rp2556\n (dp2557\n g21\n g23\n sg26\n-Vbin/iotbx.pdb_remediator\n+Vbin/phenix.french_wilson\n p2558\n sbg0\n (g17\n g2\n Ntp2559\n Rp2560\n (dp2561\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_remediator.py\n+Vlib/python3/dist-packages/iotbx/command_line/french_wilson.py\n p2562\n sbsg0\n (g17\n g2\n Ntp2563\n Rp2564\n (dp2565\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.split_models\n+Vbin/iotbx.french_wilson\n p2566\n sbg0\n (g17\n g2\n Ntp2567\n Rp2568\n (dp2569\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_split_models.py\n+Vlib/python3/dist-packages/iotbx/command_line/french_wilson.py\n p2570\n sbsg0\n (g17\n g2\n Ntp2571\n Rp2572\n (dp2573\n g21\n g23\n sg26\n-Vbin/iotbx.pdb_labels_diff\n+Vbin/iotbx.shelx.as_xray_structure\n p2574\n sbg0\n (g17\n g2\n Ntp2575\n Rp2576\n (dp2577\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_labels_diff.py\n+Vlib/python3/dist-packages/iotbx/command_line/shelx.as_xray_structure.py\n p2578\n sbsg0\n (g17\n g2\n Ntp2579\n Rp2580\n (dp2581\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.show_connectivity\n+Vbin/iotbx.cns.sdb_reader\n p2582\n sbg0\n (g17\n g2\n Ntp2583\n Rp2584\n (dp2585\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_show_connectivity.py\n+Vlib/python3/dist-packages/iotbx/command_line/cns.sdb_reader.py\n p2586\n sbsg0\n (g17\n g2\n Ntp2587\n Rp2588\n (dp2589\n g21\n g23\n sg26\n-Vbin/iotbx.get_pubmed_citation\n+Vbin/iotbx.pdb.print_sequence\n p2590\n sbg0\n (g17\n g2\n Ntp2591\n Rp2592\n (dp2593\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/get_pubmed_citation.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.print_sequence.py\n p2594\n sbsg0\n (g17\n g2\n Ntp2595\n Rp2596\n (dp2597\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.flip_symmetric_amino_acids\n+Vbin/phenix.mtz.dump\n p2598\n sbg0\n (g17\n g2\n Ntp2599\n Rp2600\n (dp2601\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py\n+Vlib/python3/dist-packages/iotbx/command_line/mtz.dump.py\n p2602\n sbsg0\n (g17\n g2\n Ntp2603\n Rp2604\n (dp2605\n g21\n g23\n sg26\n-Vbin/iotbx.pdb_labels_comparison\n+Vbin/iotbx.mtz.dump\n p2606\n sbg0\n (g17\n g2\n Ntp2607\n Rp2608\n (dp2609\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_labels_comparison.py\n+Vlib/python3/dist-packages/iotbx/command_line/mtz.dump.py\n p2610\n sbsg0\n (g17\n g2\n Ntp2611\n Rp2612\n (dp2613\n g21\n g23\n sg26\n-Vbin/iotbx.show_distances\n+Vbin/iotbx.pdb.flip_symmetric_amino_acids\n p2614\n sbg0\n (g17\n g2\n Ntp2615\n Rp2616\n (dp2617\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/show_distances.py\n+Vlib/python3/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py\n p2618\n sbsg0\n (g17\n g2\n Ntp2619\n Rp2620\n (dp2621\n g21\n g23\n sg26\n-Vbin/iotbx.unique_with_biomt\n+Vbin/iotbx.pdb.get_citation\n p2622\n sbg0\n (g17\n g2\n Ntp2623\n Rp2624\n (dp2625\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/unique_with_biomt.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_get_citation.py\n p2626\n sbsg0\n (g17\n g2\n Ntp2627\n Rp2628\n (dp2629\n g21\n g23\n sg26\n-Vbin/phenix.unique_with_biomt\n+Vbin/iotbx.pdb_as_fasta\n p2630\n sbg0\n (g17\n g2\n Ntp2631\n Rp2632\n (dp2633\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/unique_with_biomt.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb_as_fasta.py\n p2634\n sbsg0\n (g17\n g2\n Ntp2635\n Rp2636\n (dp2637\n g21\n g23\n sg26\n-Vbin/iotbx.file_reader\n+Vbin/iotbx.split_data_cif\n p2638\n sbg0\n (g17\n g2\n Ntp2639\n Rp2640\n (dp2641\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/file_reader.py\n+Vlib/python3/dist-packages/iotbx/command_line/split_data_cif.py\n p2642\n sbsg0\n (g17\n g2\n Ntp2643\n Rp2644\n (dp2645\n g21\n g23\n sg26\n-Vbin/iotbx.symmetry_search\n+Vbin/iotbx.r_free_flags_accumulation\n p2646\n sbg0\n (g17\n g2\n Ntp2647\n Rp2648\n (dp2649\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/symmetry_search.py\n+Vlib/python3/dist-packages/iotbx/command_line/r_free_flags_accumulation.py\n p2650\n sbsg0\n (g17\n g2\n Ntp2651\n Rp2652\n (dp2653\n g21\n g23\n sg26\n-Vbin/phenix.pdb_as_cif\n+Vbin/iotbx.pdb.link_as_geometry_restraints_edits\n p2654\n sbg0\n (g17\n g2\n Ntp2655\n Rp2656\n (dp2657\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb_as_cif.py\n+Vlib/python3/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py\n p2658\n sbsg0\n (g17\n g2\n Ntp2659\n Rp2660\n (dp2661\n g21\n g23\n sg26\n-Vbin/iotbx.reflection_file_editor\n+Vbin/iotbx.export_scalepack_unmerged\n p2662\n sbg0\n (g17\n g2\n Ntp2663\n Rp2664\n (dp2665\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/reflection_file_editor.py\n+Vlib/python3/dist-packages/iotbx/command_line/export_scalepack_unmerged.py\n p2666\n sbsg0\n (g17\n g2\n Ntp2667\n Rp2668\n (dp2669\n g21\n g23\n sg26\n-Vbin/iotbx.build_phil_cache\n+Vbin/iotbx.shelx.dump_as_python\n p2670\n sbg0\n (g17\n g2\n Ntp2671\n Rp2672\n (dp2673\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/build_phil_cache.py\n+Vlib/python3/dist-packages/iotbx/command_line/shelx.dump_as_python.py\n p2674\n sbsg0\n (g17\n g2\n Ntp2675\n Rp2676\n (dp2677\n g21\n g23\n sg26\n-Vbin/iotbx.pdb.as_xray_structure\n+Vbin/iotbx.reflection_file_editor\n p2678\n sbg0\n (g17\n g2\n Ntp2679\n Rp2680\n (dp2681\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/pdb.as_xray_structure.py\n+Vlib/python3/dist-packages/iotbx/command_line/reflection_file_editor.py\n p2682\n sbsg0\n (g17\n g2\n Ntp2683\n Rp2684\n (dp2685\n g21\n g23\n sg26\n-Vbin/iotbx.cns.sdb_reader\n+Vbin/iotbx.distance_least_squares\n p2686\n sbg0\n (g17\n g2\n Ntp2687\n Rp2688\n (dp2689\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/iotbx/command_line/cns.sdb_reader.py\n+Vlib/python3/dist-packages/iotbx/command_line/distance_least_squares.py\n p2690\n sbsg0\n (g17\n g2\n Ntp2691\n Rp2692\n (dp2693\n@@ -7345,3480 +7345,3480 @@\n g2\n Ntp2699\n Rp2700\n (dp2701\n g21\n g23\n sg26\n-Vbin/phenix.fem\n+Vbin/phenix.maximum_entropy_map\n p2702\n sbg0\n (g17\n g2\n Ntp2703\n Rp2704\n (dp2705\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/development_fem.py\n+Vlib/python3/dist-packages/mmtbx/command_line/maximum_entropy_map.py\n p2706\n sbsg0\n (g17\n g2\n Ntp2707\n Rp2708\n (dp2709\n g21\n g23\n sg26\n-Vbin/phenix.feature_enhanced_map\n+Vbin/phenix.rank_scale_map\n p2710\n sbg0\n (g17\n g2\n Ntp2711\n Rp2712\n (dp2713\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/development_fem.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rank_scale_map.py\n p2714\n sbsg0\n (g17\n g2\n Ntp2715\n Rp2716\n (dp2717\n g21\n g23\n sg26\n-Vbin/mmtbx.distance_difference\n+Vbin/phenix.mp_validate_bonds\n p2718\n sbg0\n (g17\n g2\n Ntp2719\n Rp2720\n (dp2721\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/distance_difference.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mp_validate_bonds.py\n p2722\n sbsg0\n (g17\n g2\n Ntp2723\n Rp2724\n (dp2725\n g21\n g23\n sg26\n-Vbin/phenix.tls_analysis\n+Vbin/molprobity.mp_validate_bonds\n p2726\n sbg0\n (g17\n g2\n Ntp2727\n Rp2728\n (dp2729\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/tls_analysis.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mp_validate_bonds.py\n p2730\n sbsg0\n (g17\n g2\n Ntp2731\n Rp2732\n (dp2733\n g21\n g23\n sg26\n-Vbin/phenix.find_peaks_holes\n+Vbin/mmtbx.development.electrons\n p2734\n sbg0\n (g17\n g2\n Ntp2735\n Rp2736\n (dp2737\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/find_peaks_holes.py\n+Vlib/python3/dist-packages/mmtbx/command_line/electrons.py\n p2738\n sbsg0\n (g17\n g2\n Ntp2739\n Rp2740\n (dp2741\n g21\n g23\n sg26\n-Vbin/mmtbx.find_peaks_holes\n+Vbin/phenix.fobs_minus_fobs_map\n p2742\n sbg0\n (g17\n g2\n Ntp2743\n Rp2744\n (dp2745\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/find_peaks_holes.py\n+Vlib/python3/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py\n p2746\n sbsg0\n (g17\n g2\n Ntp2747\n Rp2748\n (dp2749\n g21\n g23\n sg26\n-Vbin/phenix.fetch_pdb\n+Vbin/phenix.fab_elbow_angle\n p2750\n sbg0\n (g17\n g2\n Ntp2751\n Rp2752\n (dp2753\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/fetch_pdb.py\n+Vlib/python3/dist-packages/mmtbx/command_line/fab_elbow_angle.py\n p2754\n sbsg0\n (g17\n g2\n Ntp2755\n Rp2756\n (dp2757\n g21\n g23\n sg26\n-Vbin/iotbx.fetch_pdb\n+Vbin/phenix.fake_f_obs\n p2758\n sbg0\n (g17\n g2\n Ntp2759\n Rp2760\n (dp2761\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/fetch_pdb.py\n+Vlib/python3/dist-packages/mmtbx/command_line/fake_f_obs.py\n p2762\n sbsg0\n (g17\n g2\n Ntp2763\n Rp2764\n (dp2765\n g21\n g23\n sg26\n-Vbin/phenix.reciprocal_space_arrays\n+Vbin/phenix.rna_validate_suites\n p2766\n sbg0\n (g17\n g2\n Ntp2767\n Rp2768\n (dp2769\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_suites.py\n p2770\n sbsg0\n (g17\n g2\n Ntp2771\n Rp2772\n (dp2773\n g21\n g23\n sg26\n-Vbin/mmtbx.matthews\n+Vbin/molprobity.rna_validate_suites\n p2774\n sbg0\n (g17\n g2\n Ntp2775\n Rp2776\n (dp2777\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/matthews.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_suites.py\n p2778\n sbsg0\n (g17\n g2\n Ntp2779\n Rp2780\n (dp2781\n g21\n g23\n sg26\n-Vbin/mmtbx.massage_data\n+Vbin/phenix.model_idealization\n p2782\n sbg0\n (g17\n g2\n Ntp2783\n Rp2784\n (dp2785\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/massage_data.py\n+Vlib/python3/dist-packages/mmtbx/command_line/model_idealization.py\n p2786\n sbsg0\n (g17\n g2\n Ntp2787\n Rp2788\n (dp2789\n g21\n g23\n sg26\n-Vbin/phenix.mtz2map\n+Vbin/phenix.cif_as_mtz\n p2790\n sbg0\n (g17\n g2\n Ntp2791\n Rp2792\n (dp2793\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mtz2map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cif_as_mtz.py\n p2794\n sbsg0\n (g17\n g2\n Ntp2795\n Rp2796\n (dp2797\n g21\n g23\n sg26\n-Vbin/phenix.fft\n+Vbin/iotbx.cif_as_mtz\n p2798\n sbg0\n (g17\n g2\n Ntp2799\n Rp2800\n (dp2801\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mtz2map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cif_as_mtz.py\n p2802\n sbsg0\n (g17\n g2\n Ntp2803\n Rp2804\n (dp2805\n g21\n g23\n sg26\n-Vbin/mmtbx.fft\n+Vbin/mmtbx.hydrogenate\n p2806\n sbg0\n (g17\n g2\n Ntp2807\n Rp2808\n (dp2809\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mtz2map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/hydrogenate.py\n p2810\n sbsg0\n (g17\n g2\n Ntp2811\n Rp2812\n (dp2813\n g21\n g23\n sg26\n-Vbin/phenix.grow_density\n+Vbin/mmtbx.mp_geo\n p2814\n sbg0\n (g17\n g2\n Ntp2815\n Rp2816\n (dp2817\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/grow_density.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mp_geo.py\n p2818\n sbsg0\n (g17\n g2\n Ntp2819\n Rp2820\n (dp2821\n g21\n g23\n sg26\n-Vbin/phenix.secondary_structure_restraints\n+Vbin/mmtbx.verify_mon_lib_data\n p2822\n sbg0\n (g17\n g2\n Ntp2823\n Rp2824\n (dp2825\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/secondary_structure_restraints.py\n+Vlib/python3/dist-packages/mmtbx/command_line/verify_mon_lib_data.py\n p2826\n sbsg0\n (g17\n g2\n Ntp2827\n Rp2828\n (dp2829\n g21\n g23\n sg26\n-Vbin/phenix.comparama\n+Vbin/phenix.pdb_atom_selection\n p2830\n sbg0\n (g17\n g2\n Ntp2831\n Rp2832\n (dp2833\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/comparama.py\n+Vlib/python3/dist-packages/mmtbx/command_line/pdb_atom_selection.py\n p2834\n sbsg0\n (g17\n g2\n Ntp2835\n Rp2836\n (dp2837\n g21\n g23\n sg26\n-Vbin/phenix.clashscore\n+Vbin/phenix.fetch_pdb\n p2838\n sbg0\n (g17\n g2\n Ntp2839\n Rp2840\n (dp2841\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/clashscore.py\n+Vlib/python3/dist-packages/mmtbx/command_line/fetch_pdb.py\n p2842\n sbsg0\n (g17\n g2\n Ntp2843\n Rp2844\n (dp2845\n g21\n g23\n sg26\n-Vbin/molprobity.clashscore\n+Vbin/iotbx.fetch_pdb\n p2846\n sbg0\n (g17\n g2\n Ntp2847\n Rp2848\n (dp2849\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/clashscore.py\n+Vlib/python3/dist-packages/mmtbx/command_line/fetch_pdb.py\n p2850\n sbsg0\n (g17\n g2\n Ntp2851\n Rp2852\n (dp2853\n g21\n g23\n sg26\n-Vbin/phenix.model_map\n+Vbin/phenix.real_space_correlation\n p2854\n sbg0\n (g17\n g2\n Ntp2855\n Rp2856\n (dp2857\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/model_map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/real_space_correlation.py\n p2858\n sbsg0\n (g17\n g2\n Ntp2859\n Rp2860\n (dp2861\n g21\n g23\n sg26\n-Vbin/mmtbx.quantum_interface\n+Vbin/phenix.molprobity\n p2862\n sbg0\n (g17\n g2\n Ntp2863\n Rp2864\n (dp2865\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/quantum_interface.py\n+Vlib/python3/dist-packages/mmtbx/command_line/molprobity.py\n p2866\n sbsg0\n (g17\n g2\n Ntp2867\n Rp2868\n (dp2869\n g21\n g23\n sg26\n-Vbin/phenix.helix_sheet_recs_as_pdb_files\n+Vbin/molprobity.molprobity\n p2870\n sbg0\n (g17\n g2\n Ntp2871\n Rp2872\n (dp2873\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py\n+Vlib/python3/dist-packages/mmtbx/command_line/molprobity.py\n p2874\n sbsg0\n (g17\n g2\n Ntp2875\n Rp2876\n (dp2877\n g21\n g23\n sg26\n-Vbin/mmtbx.development.ligand_restraints_validation\n+Vbin/mmtbx.apply_ncs_to_ligand\n p2878\n sbg0\n (g17\n g2\n Ntp2879\n Rp2880\n (dp2881\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/ligand_restraints_validation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py\n p2882\n sbsg0\n (g17\n g2\n Ntp2883\n Rp2884\n (dp2885\n g21\n g23\n sg26\n-Vbin/phenix.secondary_structure_validation\n+Vbin/phenix.xtriage\n p2886\n sbg0\n (g17\n g2\n Ntp2887\n Rp2888\n (dp2889\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/secondary_structure_validation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/xtriage.py\n p2890\n sbsg0\n (g17\n g2\n Ntp2891\n Rp2892\n (dp2893\n g21\n g23\n sg26\n-Vbin/mmtbx.superpose\n+Vbin/mmtbx.xtriage\n p2894\n sbg0\n (g17\n g2\n Ntp2895\n Rp2896\n (dp2897\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/superpose.py\n+Vlib/python3/dist-packages/mmtbx/command_line/xtriage.py\n p2898\n sbsg0\n (g17\n g2\n Ntp2899\n Rp2900\n (dp2901\n g21\n g23\n sg26\n-Vbin/phenix.xtriage\n+Vbin/phenix.geometry_minimization\n p2902\n sbg0\n (g17\n g2\n Ntp2903\n Rp2904\n (dp2905\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/xtriage.py\n+Vlib/python3/dist-packages/mmtbx/command_line/geometry_minimization.py\n p2906\n sbsg0\n (g17\n g2\n Ntp2907\n Rp2908\n (dp2909\n g21\n g23\n sg26\n-Vbin/mmtbx.xtriage\n+Vbin/mmtbx.rigid_bond_test\n p2910\n sbg0\n (g17\n g2\n Ntp2911\n Rp2912\n (dp2913\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/xtriage.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rigid_bond_test.py\n p2914\n sbsg0\n (g17\n g2\n Ntp2915\n Rp2916\n (dp2917\n g21\n g23\n sg26\n-Vbin/phenix.map_to_structure_factors\n+Vbin/phenix.barbed_wire_analysis\n p2918\n sbg0\n (g17\n g2\n Ntp2919\n Rp2920\n (dp2921\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/map_to_structure_factors.py\n+Vlib/python3/dist-packages/mmtbx/command_line/barbed_wire_analysis.py\n p2922\n sbsg0\n (g17\n g2\n Ntp2923\n Rp2924\n (dp2925\n g21\n g23\n sg26\n-Vbin/phenix.model_model_distances\n+Vbin/molprobity.barbed_wire_analysis\n p2926\n sbg0\n (g17\n g2\n Ntp2927\n Rp2928\n (dp2929\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/model_model_distances.py\n+Vlib/python3/dist-packages/mmtbx/command_line/barbed_wire_analysis.py\n p2930\n sbsg0\n (g17\n g2\n Ntp2931\n Rp2932\n (dp2933\n g21\n g23\n sg26\n-Vbin/mmtbx.super\n+Vbin/phenix.secondary_structure_restraints\n p2934\n sbg0\n (g17\n g2\n Ntp2935\n Rp2936\n (dp2937\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/super.py\n+Vlib/python3/dist-packages/mmtbx/command_line/secondary_structure_restraints.py\n p2938\n sbsg0\n (g17\n g2\n Ntp2939\n Rp2940\n (dp2941\n g21\n g23\n sg26\n-Vbin/molprobity.probescore_ligand\n+Vbin/mmtbx.superpose\n p2942\n sbg0\n (g17\n g2\n Ntp2943\n Rp2944\n (dp2945\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/probescore_ligand.py\n+Vlib/python3/dist-packages/mmtbx/command_line/superpose.py\n p2946\n sbsg0\n (g17\n g2\n Ntp2947\n Rp2948\n (dp2949\n g21\n g23\n sg26\n-Vbin/mmtbx.refine_anomalous_substructure\n+Vbin/phenix.models_as_chains\n p2950\n sbg0\n (g17\n g2\n Ntp2951\n Rp2952\n (dp2953\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py\n+Vlib/python3/dist-packages/mmtbx/command_line/models_as_chains.py\n p2954\n sbsg0\n (g17\n g2\n Ntp2955\n Rp2956\n (dp2957\n g21\n g23\n sg26\n-Vbin/mmtbx.find_residue_in_pdb\n+Vbin/mmtbx.table_one\n p2958\n sbg0\n (g17\n g2\n Ntp2959\n Rp2960\n (dp2961\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/find_residue_in_pdb.py\n+Vlib/python3/dist-packages/mmtbx/command_line/table_one.py\n p2962\n sbsg0\n (g17\n g2\n Ntp2963\n Rp2964\n (dp2965\n g21\n g23\n sg26\n-Vbin/phenix.kinemage\n+Vbin/phenix.find_tls_groups\n p2966\n sbg0\n (g17\n g2\n Ntp2967\n Rp2968\n (dp2969\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/kinemage.py\n+Vlib/python3/dist-packages/mmtbx/command_line/find_tls_groups.py\n p2970\n sbsg0\n (g17\n g2\n Ntp2971\n Rp2972\n (dp2973\n g21\n g23\n sg26\n-Vbin/molprobity.kinemage\n+Vbin/phenix.fem\n p2974\n sbg0\n (g17\n g2\n Ntp2975\n Rp2976\n (dp2977\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/kinemage.py\n+Vlib/python3/dist-packages/mmtbx/command_line/development_fem.py\n p2978\n sbsg0\n (g17\n g2\n Ntp2979\n Rp2980\n (dp2981\n g21\n g23\n sg26\n-Vbin/phenix.suitename_old\n+Vbin/phenix.feature_enhanced_map\n p2982\n sbg0\n (g17\n g2\n Ntp2983\n Rp2984\n (dp2985\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/suitename_old.py\n+Vlib/python3/dist-packages/mmtbx/command_line/development_fem.py\n p2986\n sbsg0\n (g17\n g2\n Ntp2987\n Rp2988\n (dp2989\n g21\n g23\n sg26\n-Vbin/molprobity.suitename_old\n+Vbin/phenix.tls_analysis\n p2990\n sbg0\n (g17\n g2\n Ntp2991\n Rp2992\n (dp2993\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/suitename_old.py\n+Vlib/python3/dist-packages/mmtbx/command_line/tls_analysis.py\n p2994\n sbsg0\n (g17\n g2\n Ntp2995\n Rp2996\n (dp2997\n g21\n g23\n sg26\n-Vbin/cctbx.suitename_old\n+Vbin/phenix.map_box\n p2998\n sbg0\n (g17\n g2\n Ntp2999\n Rp3000\n (dp3001\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/suitename_old.py\n+Vlib/python3/dist-packages/mmtbx/command_line/map_box.py\n p3002\n sbsg0\n (g17\n g2\n Ntp3003\n Rp3004\n (dp3005\n g21\n g23\n sg26\n-Vbin/phenix.cbetadev\n+Vbin/phenix.clashscore\n p3006\n sbg0\n (g17\n g2\n Ntp3007\n Rp3008\n (dp3009\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cbetadev.py\n+Vlib/python3/dist-packages/mmtbx/command_line/clashscore.py\n p3010\n sbsg0\n (g17\n g2\n Ntp3011\n Rp3012\n (dp3013\n g21\n g23\n sg26\n-Vbin/molprobity.cbetadev\n+Vbin/molprobity.clashscore\n p3014\n sbg0\n (g17\n g2\n Ntp3015\n Rp3016\n (dp3017\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cbetadev.py\n+Vlib/python3/dist-packages/mmtbx/command_line/clashscore.py\n p3018\n sbsg0\n (g17\n g2\n Ntp3019\n Rp3020\n (dp3021\n g21\n g23\n sg26\n-Vbin/phenix.pdbtools\n+Vbin/phenix.mtz2map\n p3022\n sbg0\n (g17\n g2\n Ntp3023\n Rp3024\n (dp3025\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/pdbtools.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mtz2map.py\n p3026\n sbsg0\n (g17\n g2\n Ntp3027\n Rp3028\n (dp3029\n g21\n g23\n sg26\n-Vbin/mmtbx.reduce2\n+Vbin/phenix.fft\n p3030\n sbg0\n (g17\n g2\n Ntp3031\n Rp3032\n (dp3033\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/reduce2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mtz2map.py\n p3034\n sbsg0\n (g17\n g2\n Ntp3035\n Rp3036\n (dp3037\n g21\n g23\n sg26\n-Vbin/mmtbx.search_pdb_symmetry\n+Vbin/mmtbx.fft\n p3038\n sbg0\n (g17\n g2\n Ntp3039\n Rp3040\n (dp3041\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/search_pdb_symmetry.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mtz2map.py\n p3042\n sbsg0\n (g17\n g2\n Ntp3043\n Rp3044\n (dp3045\n g21\n g23\n sg26\n-Vbin/mmtbx.prune_model\n+Vbin/phenix.rna_validate_bonds\n p3046\n sbg0\n (g17\n g2\n Ntp3047\n Rp3048\n (dp3049\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/prune_model.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_bonds.py\n p3050\n sbsg0\n (g17\n g2\n Ntp3051\n Rp3052\n (dp3053\n g21\n g23\n sg26\n-Vbin/phenix.geometry_minimization\n+Vbin/molprobity.rna_validate_bonds\n p3054\n sbg0\n (g17\n g2\n Ntp3055\n Rp3056\n (dp3057\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/geometry_minimization.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_bonds.py\n p3058\n sbsg0\n (g17\n g2\n Ntp3059\n Rp3060\n (dp3061\n g21\n g23\n sg26\n-Vbin/mmtbx.development.validate_ligands\n+Vbin/mmtbx.reduce2\n p3062\n sbg0\n (g17\n g2\n Ntp3063\n Rp3064\n (dp3065\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/validate_ligands.py\n+Vlib/python3/dist-packages/mmtbx/command_line/reduce2.py\n p3066\n sbsg0\n (g17\n g2\n Ntp3067\n Rp3068\n (dp3069\n g21\n g23\n sg26\n-Vbin/phenix.cif_as_mtz\n+Vbin/phenix.model_map\n p3070\n sbg0\n (g17\n g2\n Ntp3071\n Rp3072\n (dp3073\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cif_as_mtz.py\n+Vlib/python3/dist-packages/mmtbx/command_line/model_map.py\n p3074\n sbsg0\n (g17\n g2\n Ntp3075\n Rp3076\n (dp3077\n g21\n g23\n sg26\n-Vbin/iotbx.cif_as_mtz\n+Vbin/phenix.map_to_structure_factors\n p3078\n sbg0\n (g17\n g2\n Ntp3079\n Rp3080\n (dp3081\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cif_as_mtz.py\n+Vlib/python3/dist-packages/mmtbx/command_line/map_to_structure_factors.py\n p3082\n sbsg0\n (g17\n g2\n Ntp3083\n Rp3084\n (dp3085\n g21\n g23\n sg26\n-Vbin/phenix.rna_validate_puckers\n+Vbin/phenix.clashscore2\n p3086\n sbg0\n (g17\n g2\n Ntp3087\n Rp3088\n (dp3089\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_puckers.py\n+Vlib/python3/dist-packages/mmtbx/command_line/clashscore2.py\n p3090\n sbsg0\n (g17\n g2\n Ntp3091\n Rp3092\n (dp3093\n g21\n g23\n sg26\n-Vbin/molprobity.rna_validate_puckers\n+Vbin/molprobity.clashscore2\n p3094\n sbg0\n (g17\n g2\n Ntp3095\n Rp3096\n (dp3097\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_puckers.py\n+Vlib/python3/dist-packages/mmtbx/command_line/clashscore2.py\n p3098\n sbsg0\n (g17\n g2\n Ntp3099\n Rp3100\n (dp3101\n g21\n g23\n sg26\n-Vbin/phenix.map_comparison\n+Vbin/mmtbx.clashscore2\n p3102\n sbg0\n (g17\n g2\n Ntp3103\n Rp3104\n (dp3105\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/map_comparison.py\n+Vlib/python3/dist-packages/mmtbx/command_line/clashscore2.py\n p3106\n sbsg0\n (g17\n g2\n Ntp3107\n Rp3108\n (dp3109\n g21\n g23\n sg26\n-Vbin/phenix.undowser_validation\n+Vbin/phenix.map_to_model_histogram\n p3110\n sbg0\n (g17\n g2\n Ntp3111\n Rp3112\n (dp3113\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/undowser.py\n+Vlib/python3/dist-packages/mmtbx/command_line/map_to_model_histogram.py\n p3114\n sbsg0\n (g17\n g2\n Ntp3115\n Rp3116\n (dp3117\n g21\n g23\n sg26\n-Vbin/molprobity.undowser_validation\n+Vbin/mmtbx.mon_lib_cif_triage\n p3118\n sbg0\n (g17\n g2\n Ntp3119\n Rp3120\n (dp3121\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/undowser.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py\n p3122\n sbsg0\n (g17\n g2\n Ntp3123\n Rp3124\n (dp3125\n g21\n g23\n sg26\n-Vbin/phenix.rna_validate_bonds\n+Vbin/mmtbx.development.ligand_restraints_validation\n p3126\n sbg0\n (g17\n g2\n Ntp3127\n Rp3128\n (dp3129\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_bonds.py\n+Vlib/python3/dist-packages/mmtbx/command_line/ligand_restraints_validation.py\n p3130\n sbsg0\n (g17\n g2\n Ntp3131\n Rp3132\n (dp3133\n g21\n g23\n sg26\n-Vbin/molprobity.rna_validate_bonds\n+Vbin/phenix.hbond\n p3134\n sbg0\n (g17\n g2\n Ntp3135\n Rp3136\n (dp3137\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_bonds.py\n+Vlib/python3/dist-packages/mmtbx/command_line/hbond.py\n p3138\n sbsg0\n (g17\n g2\n Ntp3139\n Rp3140\n (dp3141\n g21\n g23\n sg26\n-Vbin/phenix.real_space_correlation\n+Vbin/mmtbx.plan_sad_experiment\n p3142\n sbg0\n (g17\n g2\n Ntp3143\n Rp3144\n (dp3145\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/real_space_correlation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/plan_sad_experiment.py\n p3146\n sbsg0\n (g17\n g2\n Ntp3147\n Rp3148\n (dp3149\n g21\n g23\n sg26\n-Vbin/phenix.omegalyze\n+Vbin/mmtbx.search_pdb_symmetry\n p3150\n sbg0\n (g17\n g2\n Ntp3151\n Rp3152\n (dp3153\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/omegalyze.py\n+Vlib/python3/dist-packages/mmtbx/command_line/search_pdb_symmetry.py\n p3154\n sbsg0\n (g17\n g2\n Ntp3155\n Rp3156\n (dp3157\n g21\n g23\n sg26\n-Vbin/molprobity.omegalyze\n+Vbin/phenix.validate_H\n p3158\n sbg0\n (g17\n g2\n Ntp3159\n Rp3160\n (dp3161\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/omegalyze.py\n+Vlib/python3/dist-packages/mmtbx/command_line/validate_H_cl_app.py\n p3162\n sbsg0\n (g17\n g2\n Ntp3163\n Rp3164\n (dp3165\n g21\n g23\n sg26\n-Vbin/phenix.undowser2_validation\n+Vbin/mmtbx.quantum_interface\n p3166\n sbg0\n (g17\n g2\n Ntp3167\n Rp3168\n (dp3169\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/undowser2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/quantum_interface.py\n p3170\n sbsg0\n (g17\n g2\n Ntp3171\n Rp3172\n (dp3173\n g21\n g23\n sg26\n-Vbin/mmtbx.undowser2_validation\n+Vbin/mmtbx.find_residue_in_pdb\n p3174\n sbg0\n (g17\n g2\n Ntp3175\n Rp3176\n (dp3177\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/undowser2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/find_residue_in_pdb.py\n p3178\n sbsg0\n (g17\n g2\n Ntp3179\n Rp3180\n (dp3181\n g21\n g23\n sg26\n-Vbin/molprobity.undowser2_validation\n+Vbin/phenix.real_space_diff_map\n p3182\n sbg0\n (g17\n g2\n Ntp3183\n Rp3184\n (dp3185\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/undowser2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/real_space_diff_map.py\n p3186\n sbsg0\n (g17\n g2\n Ntp3187\n Rp3188\n (dp3189\n g21\n g23\n sg26\n-Vbin/mmtbx.plan_sad_experiment\n+Vbin/mmtbx.altloc_remediate\n p3190\n sbg0\n (g17\n g2\n Ntp3191\n Rp3192\n (dp3193\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/plan_sad_experiment.py\n+Vlib/python3/dist-packages/mmtbx/command_line/altloc_remediate.py\n p3194\n sbsg0\n (g17\n g2\n Ntp3195\n Rp3196\n (dp3197\n g21\n g23\n sg26\n-Vbin/phenix.validate_H\n+Vbin/mmtbx.development.validate_ligands\n p3198\n sbg0\n (g17\n g2\n Ntp3199\n Rp3200\n (dp3201\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/validate_H_cl_app.py\n+Vlib/python3/dist-packages/mmtbx/command_line/validate_ligands.py\n p3202\n sbsg0\n (g17\n g2\n Ntp3203\n Rp3204\n (dp3205\n g21\n g23\n sg26\n-Vbin/phenix.cablam_idealization\n+Vbin/mmtbx.distance_difference\n p3206\n sbg0\n (g17\n g2\n Ntp3207\n Rp3208\n (dp3209\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cablam_idealization.py\n+Vlib/python3/dist-packages/mmtbx/command_line/distance_difference.py\n p3210\n sbsg0\n (g17\n g2\n Ntp3211\n Rp3212\n (dp3213\n g21\n g23\n sg26\n-Vbin/mmtbx.altloc_remediate\n+Vbin/mmtbx.nonbonded_overlaps\n p3214\n sbg0\n (g17\n g2\n Ntp3215\n Rp3216\n (dp3217\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/altloc_remediate.py\n+Vlib/python3/dist-packages/mmtbx/command_line/nonbonded_overlaps.py\n p3218\n sbsg0\n (g17\n g2\n Ntp3219\n Rp3220\n (dp3221\n g21\n g23\n sg26\n-Vbin/phenix.sort_hetatms\n+Vbin/mmtbx.rebuild_rotarama_cache\n p3222\n sbg0\n (g17\n g2\n Ntp3223\n Rp3224\n (dp3225\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/sort_hetatms.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py\n p3226\n sbsg0\n (g17\n g2\n Ntp3227\n Rp3228\n (dp3229\n g21\n g23\n sg26\n-Vbin/phenix.r_factor_statistics\n+Vbin/phenix.f000\n p3230\n sbg0\n (g17\n g2\n Ntp3231\n Rp3232\n (dp3233\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/r_factor_statistics.py\n+Vlib/python3/dist-packages/mmtbx/command_line/f000.py\n p3234\n sbsg0\n (g17\n g2\n Ntp3235\n Rp3236\n (dp3237\n g21\n g23\n sg26\n-Vbin/phenix.suitename\n+Vbin/phenix.find_peaks_holes\n p3238\n sbg0\n (g17\n g2\n Ntp3239\n Rp3240\n (dp3241\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/suitename.py\n+Vlib/python3/dist-packages/mmtbx/command_line/find_peaks_holes.py\n p3242\n sbsg0\n (g17\n g2\n Ntp3243\n Rp3244\n (dp3245\n g21\n g23\n sg26\n-Vbin/molprobity.suitename\n+Vbin/mmtbx.find_peaks_holes\n p3246\n sbg0\n (g17\n g2\n Ntp3247\n Rp3248\n (dp3249\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/suitename.py\n+Vlib/python3/dist-packages/mmtbx/command_line/find_peaks_holes.py\n p3250\n sbsg0\n (g17\n g2\n Ntp3251\n Rp3252\n (dp3253\n g21\n g23\n sg26\n-Vbin/cctbx.suitename\n+Vbin/mmtbx.refine_anomalous_substructure\n p3254\n sbg0\n (g17\n g2\n Ntp3255\n Rp3256\n (dp3257\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/suitename.py\n+Vlib/python3/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py\n p3258\n sbsg0\n (g17\n g2\n Ntp3259\n Rp3260\n (dp3261\n g21\n g23\n sg26\n-Vbin/mmtbx.ss_idealization\n+Vbin/mmtbx.rama_z\n p3262\n sbg0\n (g17\n g2\n Ntp3263\n Rp3264\n (dp3265\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/ss_idealization.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rama_z.py\n p3266\n sbsg0\n (g17\n g2\n Ntp3267\n Rp3268\n (dp3269\n g21\n g23\n sg26\n-Vbin/phenix.remove_outliers\n+Vbin/phenix.rama_z\n p3270\n sbg0\n (g17\n g2\n Ntp3271\n Rp3272\n (dp3273\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/remove_outliers.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rama_z.py\n p3274\n sbsg0\n (g17\n g2\n Ntp3275\n Rp3276\n (dp3277\n g21\n g23\n sg26\n-Vbin/mmtbx.density_modification\n+Vbin/phenix.emringer\n p3278\n sbg0\n (g17\n g2\n Ntp3279\n Rp3280\n (dp3281\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/density_modification.py\n+Vlib/python3/dist-packages/mmtbx/command_line/emringer.py\n p3282\n sbsg0\n (g17\n g2\n Ntp3283\n Rp3284\n (dp3285\n g21\n g23\n sg26\n-Vbin/phenix.xmanip\n+Vbin/mmtbx.massage_data\n p3286\n sbg0\n (g17\n g2\n Ntp3287\n Rp3288\n (dp3289\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/xmanip.py\n+Vlib/python3/dist-packages/mmtbx/command_line/massage_data.py\n p3290\n sbsg0\n (g17\n g2\n Ntp3291\n Rp3292\n (dp3293\n g21\n g23\n sg26\n-Vbin/phenix.maps\n+Vbin/phenix.model_vs_map\n p3294\n sbg0\n (g17\n g2\n Ntp3295\n Rp3296\n (dp3297\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/maps.py\n+Vlib/python3/dist-packages/mmtbx/command_line/model_vs_map.py\n p3298\n sbsg0\n (g17\n g2\n Ntp3299\n Rp3300\n (dp3301\n g21\n g23\n sg26\n-Vbin/mmtbx.model_vs_data\n+Vbin/mmtbx.estimate_bijvoet_ratio\n p3302\n sbg0\n (g17\n g2\n Ntp3303\n Rp3304\n (dp3305\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/model_vs_data.py\n+Vlib/python3/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py\n p3306\n sbsg0\n (g17\n g2\n Ntp3307\n Rp3308\n (dp3309\n g21\n g23\n sg26\n-Vbin/phenix.rotalyze\n+Vbin/phenix.maps\n p3310\n sbg0\n (g17\n g2\n Ntp3311\n Rp3312\n (dp3313\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rotalyze.py\n+Vlib/python3/dist-packages/mmtbx/command_line/maps.py\n p3314\n sbsg0\n (g17\n g2\n Ntp3315\n Rp3316\n (dp3317\n g21\n g23\n sg26\n-Vbin/molprobity.rotalyze\n+Vbin/phenix.tls\n p3318\n sbg0\n (g17\n g2\n Ntp3319\n Rp3320\n (dp3321\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rotalyze.py\n+Vlib/python3/dist-packages/mmtbx/command_line/tls.py\n p3322\n sbsg0\n (g17\n g2\n Ntp3323\n Rp3324\n (dp3325\n g21\n g23\n sg26\n-Vbin/mmtbx.hydrogenate\n+Vbin/phenix.cablam\n p3326\n sbg0\n (g17\n g2\n Ntp3327\n Rp3328\n (dp3329\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/hydrogenate.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cablam.py\n p3330\n sbsg0\n (g17\n g2\n Ntp3331\n Rp3332\n (dp3333\n g21\n g23\n sg26\n-Vbin/phenix.rna_validate_suites\n+Vbin/molprobity.cablam\n p3334\n sbg0\n (g17\n g2\n Ntp3335\n Rp3336\n (dp3337\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_suites.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cablam.py\n p3338\n sbsg0\n (g17\n g2\n Ntp3339\n Rp3340\n (dp3341\n g21\n g23\n sg26\n-Vbin/molprobity.rna_validate_suites\n+Vbin/phenix.model_model_distances\n p3342\n sbg0\n (g17\n g2\n Ntp3343\n Rp3344\n (dp3345\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_suites.py\n+Vlib/python3/dist-packages/mmtbx/command_line/model_model_distances.py\n p3346\n sbsg0\n (g17\n g2\n Ntp3347\n Rp3348\n (dp3349\n g21\n g23\n sg26\n-Vbin/phenix.cablam_validate\n+Vbin/mmtbx.arginine_geometry\n p3350\n sbg0\n (g17\n g2\n Ntp3351\n Rp3352\n (dp3353\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cablam_validate.py\n+Vlib/python3/dist-packages/mmtbx/command_line/arginine_geometry.py\n p3354\n sbsg0\n (g17\n g2\n Ntp3355\n Rp3356\n (dp3357\n g21\n g23\n sg26\n-Vbin/phenix.hbond\n+Vbin/phenix.grow_density\n p3358\n sbg0\n (g17\n g2\n Ntp3359\n Rp3360\n (dp3361\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/hbond.py\n+Vlib/python3/dist-packages/mmtbx/command_line/grow_density.py\n p3362\n sbsg0\n (g17\n g2\n Ntp3363\n Rp3364\n (dp3365\n g21\n g23\n sg26\n-Vbin/phenix.cc_star\n+Vbin/mmtbx.development.aev\n p3366\n sbg0\n (g17\n g2\n Ntp3367\n Rp3368\n (dp3369\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cc_star.py\n+Vlib/python3/dist-packages/mmtbx/command_line/development.aev.py\n p3370\n sbsg0\n (g17\n g2\n Ntp3371\n Rp3372\n (dp3373\n g21\n g23\n sg26\n-Vbin/phenix.molprobity\n+Vbin/mmtbx.probe2\n p3374\n sbg0\n (g17\n g2\n Ntp3375\n Rp3376\n (dp3377\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/molprobity.py\n+Vlib/python3/dist-packages/mmtbx/command_line/probe2.py\n p3378\n sbsg0\n (g17\n g2\n Ntp3379\n Rp3380\n (dp3381\n g21\n g23\n sg26\n-Vbin/molprobity.molprobity\n+Vbin/phenix.rotalyze\n p3382\n sbg0\n (g17\n g2\n Ntp3383\n Rp3384\n (dp3385\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/molprobity.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rotalyze.py\n p3386\n sbsg0\n (g17\n g2\n Ntp3387\n Rp3388\n (dp3389\n g21\n g23\n sg26\n-Vbin/phenix.polder\n+Vbin/molprobity.rotalyze\n p3390\n sbg0\n (g17\n g2\n Ntp3391\n Rp3392\n (dp3393\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/polder.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rotalyze.py\n p3394\n sbsg0\n (g17\n g2\n Ntp3395\n Rp3396\n (dp3397\n g21\n g23\n sg26\n-Vbin/mmtbx.rebuild_cablam_cache\n+Vbin/phenix.cablam_training\n p3398\n sbg0\n (g17\n g2\n Ntp3399\n Rp3400\n (dp3401\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cablam_training.py\n p3402\n sbsg0\n (g17\n g2\n Ntp3403\n Rp3404\n (dp3405\n g21\n g23\n sg26\n-Vbin/phenix.cablam_training\n+Vbin/mmtbx.ringer\n p3406\n sbg0\n (g17\n g2\n Ntp3407\n Rp3408\n (dp3409\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cablam_training.py\n+Vlib/python3/dist-packages/mmtbx/command_line/ringer.py\n p3410\n sbsg0\n (g17\n g2\n Ntp3411\n Rp3412\n (dp3413\n g21\n g23\n sg26\n-Vbin/phenix.find_tls_groups\n+Vbin/mmtbx.matthews\n p3414\n sbg0\n (g17\n g2\n Ntp3415\n Rp3416\n (dp3417\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/find_tls_groups.py\n+Vlib/python3/dist-packages/mmtbx/command_line/matthews.py\n p3418\n sbsg0\n (g17\n g2\n Ntp3419\n Rp3420\n (dp3421\n g21\n g23\n sg26\n-Vbin/phenix.barbed_wire_analysis\n+Vbin/phenix.polder\n p3422\n sbg0\n (g17\n g2\n Ntp3423\n Rp3424\n (dp3425\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/barbed_wire_analysis.py\n+Vlib/python3/dist-packages/mmtbx/command_line/polder.py\n p3426\n sbsg0\n (g17\n g2\n Ntp3427\n Rp3428\n (dp3429\n g21\n g23\n sg26\n-Vbin/molprobity.barbed_wire_analysis\n+Vbin/mmtbx.development.water_b_factors\n p3430\n sbg0\n (g17\n g2\n Ntp3431\n Rp3432\n (dp3433\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/barbed_wire_analysis.py\n+Vlib/python3/dist-packages/mmtbx/command_line/water_b_factors.py\n p3434\n sbsg0\n (g17\n g2\n Ntp3435\n Rp3436\n (dp3437\n g21\n g23\n sg26\n-Vbin/phenix.ramalyze\n+Vbin/mmtbx.super\n p3438\n sbg0\n (g17\n g2\n Ntp3439\n Rp3440\n (dp3441\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/ramalyze.py\n+Vlib/python3/dist-packages/mmtbx/command_line/super.py\n p3442\n sbsg0\n (g17\n g2\n Ntp3443\n Rp3444\n (dp3445\n g21\n g23\n sg26\n-Vbin/molprobity.ramalyze\n+Vbin/phenix.cc_star\n p3446\n sbg0\n (g17\n g2\n Ntp3447\n Rp3448\n (dp3449\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/ramalyze.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cc_star.py\n p3450\n sbsg0\n (g17\n g2\n Ntp3451\n Rp3452\n (dp3453\n g21\n g23\n sg26\n-Vbin/mmtbx.ringer\n+Vbin/phenix.kinemage\n p3454\n sbg0\n (g17\n g2\n Ntp3455\n Rp3456\n (dp3457\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/ringer.py\n+Vlib/python3/dist-packages/mmtbx/command_line/kinemage.py\n p3458\n sbsg0\n (g17\n g2\n Ntp3459\n Rp3460\n (dp3461\n g21\n g23\n sg26\n-Vbin/phenix.map_box\n+Vbin/molprobity.kinemage\n p3462\n sbg0\n (g17\n g2\n Ntp3463\n Rp3464\n (dp3465\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/map_box.py\n+Vlib/python3/dist-packages/mmtbx/command_line/kinemage.py\n p3466\n sbsg0\n (g17\n g2\n Ntp3467\n Rp3468\n (dp3469\n g21\n g23\n sg26\n-Vbin/mmtbx.development.water_b_factors\n+Vbin/phenix.mask\n p3470\n sbg0\n (g17\n g2\n Ntp3471\n Rp3472\n (dp3473\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/water_b_factors.py\n+Vlib/python3/dist-packages/mmtbx/command_line/mask.py\n p3474\n sbsg0\n (g17\n g2\n Ntp3475\n Rp3476\n (dp3477\n g21\n g23\n sg26\n-Vbin/phenix.map_to_model_histogram\n+Vbin/phenix.xmanip\n p3478\n sbg0\n (g17\n g2\n Ntp3479\n Rp3480\n (dp3481\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/map_to_model_histogram.py\n+Vlib/python3/dist-packages/mmtbx/command_line/xmanip.py\n p3482\n sbsg0\n (g17\n g2\n Ntp3483\n Rp3484\n (dp3485\n g21\n g23\n sg26\n-Vbin/phenix.models_as_chains\n+Vbin/phenix.angle\n p3486\n sbg0\n (g17\n g2\n Ntp3487\n Rp3488\n (dp3489\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/models_as_chains.py\n+Vlib/python3/dist-packages/mmtbx/command_line/angle.py\n p3490\n sbsg0\n (g17\n g2\n Ntp3491\n Rp3492\n (dp3493\n g21\n g23\n sg26\n-Vbin/mmtbx.rigid_bond_test\n+Vbin/mmtbx.ss_idealization\n p3494\n sbg0\n (g17\n g2\n Ntp3495\n Rp3496\n (dp3497\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rigid_bond_test.py\n+Vlib/python3/dist-packages/mmtbx/command_line/ss_idealization.py\n p3498\n sbsg0\n (g17\n g2\n Ntp3499\n Rp3500\n (dp3501\n g21\n g23\n sg26\n-Vbin/mmtbx.process_predicted_model\n+Vbin/mmtbx.rebuild_cablam_cache\n p3502\n sbg0\n (g17\n g2\n Ntp3503\n Rp3504\n (dp3505\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/process_predicted_model.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py\n p3506\n sbsg0\n (g17\n g2\n Ntp3507\n Rp3508\n (dp3509\n g21\n g23\n sg26\n-Vbin/phenix.process_predicted_model\n+Vbin/mmtbx.density_modification\n p3510\n sbg0\n (g17\n g2\n Ntp3511\n Rp3512\n (dp3513\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/process_predicted_model.py\n+Vlib/python3/dist-packages/mmtbx/command_line/density_modification.py\n p3514\n sbsg0\n (g17\n g2\n Ntp3515\n Rp3516\n (dp3517\n g21\n g23\n sg26\n-Vbin/mmtbx.estimate_bijvoet_ratio\n+Vbin/phenix.omegalyze\n p3518\n sbg0\n (g17\n g2\n Ntp3519\n Rp3520\n (dp3521\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py\n+Vlib/python3/dist-packages/mmtbx/command_line/omegalyze.py\n p3522\n sbsg0\n (g17\n g2\n Ntp3523\n Rp3524\n (dp3525\n g21\n g23\n sg26\n-Vbin/mmtbx.nonbonded_overlaps\n+Vbin/molprobity.omegalyze\n p3526\n sbg0\n (g17\n g2\n Ntp3527\n Rp3528\n (dp3529\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/nonbonded_overlaps.py\n+Vlib/python3/dist-packages/mmtbx/command_line/omegalyze.py\n p3530\n sbsg0\n (g17\n g2\n Ntp3531\n Rp3532\n (dp3533\n g21\n g23\n sg26\n-Vbin/phenix.f000\n+Vbin/mmtbx.process_predicted_model\n p3534\n sbg0\n (g17\n g2\n Ntp3535\n Rp3536\n (dp3537\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/f000.py\n+Vlib/python3/dist-packages/mmtbx/command_line/process_predicted_model.py\n p3538\n sbsg0\n (g17\n g2\n Ntp3539\n Rp3540\n (dp3541\n g21\n g23\n sg26\n-Vbin/phenix.clashscore2\n+Vbin/phenix.process_predicted_model\n p3542\n sbg0\n (g17\n g2\n Ntp3543\n Rp3544\n (dp3545\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/clashscore2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/process_predicted_model.py\n p3546\n sbsg0\n (g17\n g2\n Ntp3547\n Rp3548\n (dp3549\n g21\n g23\n sg26\n-Vbin/molprobity.clashscore2\n+Vbin/phenix.cablam_validate\n p3550\n sbg0\n (g17\n g2\n Ntp3551\n Rp3552\n (dp3553\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/clashscore2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cablam_validate.py\n p3554\n sbsg0\n (g17\n g2\n Ntp3555\n Rp3556\n (dp3557\n g21\n g23\n sg26\n-Vbin/mmtbx.clashscore2\n+Vbin/phenix.pdb_interpretation\n p3558\n sbg0\n (g17\n g2\n Ntp3559\n Rp3560\n (dp3561\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/clashscore2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/pdb_interpretation.py\n p3562\n sbsg0\n (g17\n g2\n Ntp3563\n Rp3564\n (dp3565\n g21\n g23\n sg26\n-Vbin/mmtbx.table_one\n+Vbin/mmtbx.pdb_interpretation\n p3566\n sbg0\n (g17\n g2\n Ntp3567\n Rp3568\n (dp3569\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/table_one.py\n+Vlib/python3/dist-packages/mmtbx/command_line/pdb_interpretation.py\n p3570\n sbsg0\n (g17\n g2\n Ntp3571\n Rp3572\n (dp3573\n g21\n g23\n sg26\n-Vbin/phenix.model_vs_map\n+Vbin/mmtbx.show_r_factors_by_shell\n p3574\n sbg0\n (g17\n g2\n Ntp3575\n Rp3576\n (dp3577\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/model_vs_map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py\n p3578\n sbsg0\n (g17\n g2\n Ntp3579\n Rp3580\n (dp3581\n g21\n g23\n sg26\n-Vbin/phenix.fake_f_obs\n+Vbin/mmtbx.select_best_starting_model\n p3582\n sbg0\n (g17\n g2\n Ntp3583\n Rp3584\n (dp3585\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/fake_f_obs.py\n+Vlib/python3/dist-packages/mmtbx/command_line/select_best_starting_model.py\n p3586\n sbsg0\n (g17\n g2\n Ntp3587\n Rp3588\n (dp3589\n g21\n g23\n sg26\n-Vbin/mmtbx.rebuild_rotarama_cache\n+Vbin/phenix.chiral_validation\n p3590\n sbg0\n (g17\n g2\n Ntp3591\n Rp3592\n (dp3593\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py\n+Vlib/python3/dist-packages/mmtbx/command_line/chiral_validation.py\n p3594\n sbsg0\n (g17\n g2\n Ntp3595\n Rp3596\n (dp3597\n g21\n g23\n sg26\n-Vbin/mmtbx.verify_mon_lib_data\n+Vbin/molprobity.chiral_validation\n p3598\n sbg0\n (g17\n g2\n Ntp3599\n Rp3600\n (dp3601\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/verify_mon_lib_data.py\n+Vlib/python3/dist-packages/mmtbx/command_line/chiral_validation.py\n p3602\n sbsg0\n (g17\n g2\n Ntp3603\n Rp3604\n (dp3605\n g21\n g23\n sg26\n-Vbin/mmtbx.ribbons\n+Vbin/phenix.undowser2_validation\n p3606\n sbg0\n (g17\n g2\n Ntp3607\n Rp3608\n (dp3609\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/ribbons.py\n+Vlib/python3/dist-packages/mmtbx/command_line/undowser2.py\n p3610\n sbsg0\n (g17\n g2\n Ntp3611\n Rp3612\n (dp3613\n g21\n g23\n sg26\n-Vbin/phenix.cablam\n+Vbin/mmtbx.undowser2_validation\n p3614\n sbg0\n (g17\n g2\n Ntp3615\n Rp3616\n (dp3617\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cablam.py\n+Vlib/python3/dist-packages/mmtbx/command_line/undowser2.py\n p3618\n sbsg0\n (g17\n g2\n Ntp3619\n Rp3620\n (dp3621\n g21\n g23\n sg26\n-Vbin/molprobity.cablam\n+Vbin/molprobity.undowser2_validation\n p3622\n sbg0\n (g17\n g2\n Ntp3623\n Rp3624\n (dp3625\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/cablam.py\n+Vlib/python3/dist-packages/mmtbx/command_line/undowser2.py\n p3626\n sbsg0\n (g17\n g2\n Ntp3627\n Rp3628\n (dp3629\n g21\n g23\n sg26\n-Vbin/mmtbx.rama_z\n+Vbin/phenix.r_factor_statistics\n p3630\n sbg0\n (g17\n g2\n Ntp3631\n Rp3632\n (dp3633\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rama_z.py\n+Vlib/python3/dist-packages/mmtbx/command_line/r_factor_statistics.py\n p3634\n sbsg0\n (g17\n g2\n Ntp3635\n Rp3636\n (dp3637\n g21\n g23\n sg26\n-Vbin/phenix.rama_z\n+Vbin/phenix.fmodel\n p3638\n sbg0\n (g17\n g2\n Ntp3639\n Rp3640\n (dp3641\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rama_z.py\n+Vlib/python3/dist-packages/mmtbx/command_line/fmodel.py\n p3642\n sbsg0\n (g17\n g2\n Ntp3643\n Rp3644\n (dp3645\n g21\n g23\n sg26\n-Vbin/phenix.emringer\n+Vbin/molprobity.probescore_ligand\n p3646\n sbg0\n (g17\n g2\n Ntp3647\n Rp3648\n (dp3649\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/emringer.py\n+Vlib/python3/dist-packages/mmtbx/command_line/probescore_ligand.py\n p3650\n sbsg0\n (g17\n g2\n Ntp3651\n Rp3652\n (dp3653\n g21\n g23\n sg26\n-Vbin/phenix.tls_as_xyz\n+Vbin/phenix.suitename\n p3654\n sbg0\n (g17\n g2\n Ntp3655\n Rp3656\n (dp3657\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/tls_as_xyz.py\n+Vlib/python3/dist-packages/mmtbx/command_line/suitename.py\n p3658\n sbsg0\n (g17\n g2\n Ntp3659\n Rp3660\n (dp3661\n g21\n g23\n sg26\n-Vbin/phenix.real_space_diff_map\n+Vbin/molprobity.suitename\n p3662\n sbg0\n (g17\n g2\n Ntp3663\n Rp3664\n (dp3665\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/real_space_diff_map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/suitename.py\n p3666\n sbsg0\n (g17\n g2\n Ntp3667\n Rp3668\n (dp3669\n g21\n g23\n sg26\n-Vbin/phenix.holton_geometry_validation\n+Vbin/cctbx.suitename\n p3670\n sbg0\n (g17\n g2\n Ntp3671\n Rp3672\n (dp3673\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/holton_geometry_validation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/suitename.py\n p3674\n sbsg0\n (g17\n g2\n Ntp3675\n Rp3676\n (dp3677\n g21\n g23\n sg26\n-Vbin/mmtbx.holton_geometry_validation\n+Vbin/phenix.ramalyze\n p3678\n sbg0\n (g17\n g2\n Ntp3679\n Rp3680\n (dp3681\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/holton_geometry_validation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/ramalyze.py\n p3682\n sbsg0\n (g17\n g2\n Ntp3683\n Rp3684\n (dp3685\n g21\n g23\n sg26\n-Vbin/phenix.fobs_minus_fobs_map\n+Vbin/molprobity.ramalyze\n p3686\n sbg0\n (g17\n g2\n Ntp3687\n Rp3688\n (dp3689\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/ramalyze.py\n p3690\n sbsg0\n (g17\n g2\n Ntp3691\n Rp3692\n (dp3693\n g21\n g23\n sg26\n-Vbin/mmtbx.mon_lib_cif_triage\n+Vbin/phenix.undowser_validation\n p3694\n sbg0\n (g17\n g2\n Ntp3695\n Rp3696\n (dp3697\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py\n+Vlib/python3/dist-packages/mmtbx/command_line/undowser.py\n p3698\n sbsg0\n (g17\n g2\n Ntp3699\n Rp3700\n (dp3701\n g21\n g23\n sg26\n-Vbin/phenix.chiral_validation\n+Vbin/molprobity.undowser_validation\n p3702\n sbg0\n (g17\n g2\n Ntp3703\n Rp3704\n (dp3705\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/chiral_validation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/undowser.py\n p3706\n sbsg0\n (g17\n g2\n Ntp3707\n Rp3708\n (dp3709\n g21\n g23\n sg26\n-Vbin/molprobity.chiral_validation\n+Vbin/mmtbx.ribbons\n p3710\n sbg0\n (g17\n g2\n Ntp3711\n Rp3712\n (dp3713\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/chiral_validation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/ribbons.py\n p3714\n sbsg0\n (g17\n g2\n Ntp3715\n Rp3716\n (dp3717\n g21\n g23\n sg26\n-Vbin/mmtbx.probe2\n+Vbin/phenix.secondary_structure_validation\n p3718\n sbg0\n (g17\n g2\n Ntp3719\n Rp3720\n (dp3721\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/probe2.py\n+Vlib/python3/dist-packages/mmtbx/command_line/secondary_structure_validation.py\n p3722\n sbsg0\n (g17\n g2\n Ntp3723\n Rp3724\n (dp3725\n g21\n g23\n sg26\n-Vbin/phenix.angle\n+Vbin/phenix.pdbtools\n p3726\n sbg0\n (g17\n g2\n Ntp3727\n Rp3728\n (dp3729\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/angle.py\n+Vlib/python3/dist-packages/mmtbx/command_line/pdbtools.py\n p3730\n sbsg0\n (g17\n g2\n Ntp3731\n Rp3732\n (dp3733\n g21\n g23\n sg26\n-Vbin/mmtbx.mp_geo\n+Vbin/phenix.suitename_old\n p3734\n sbg0\n (g17\n g2\n Ntp3735\n Rp3736\n (dp3737\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mp_geo.py\n+Vlib/python3/dist-packages/mmtbx/command_line/suitename_old.py\n p3738\n sbsg0\n (g17\n g2\n Ntp3739\n Rp3740\n (dp3741\n g21\n g23\n sg26\n-Vbin/phenix.maximum_entropy_map\n+Vbin/molprobity.suitename_old\n p3742\n sbg0\n (g17\n g2\n Ntp3743\n Rp3744\n (dp3745\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/maximum_entropy_map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/suitename_old.py\n p3746\n sbsg0\n (g17\n g2\n Ntp3747\n Rp3748\n (dp3749\n g21\n g23\n sg26\n-Vbin/phenix.rna_validate\n+Vbin/cctbx.suitename_old\n p3750\n sbg0\n (g17\n g2\n Ntp3751\n Rp3752\n (dp3753\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate.py\n+Vlib/python3/dist-packages/mmtbx/command_line/suitename_old.py\n p3754\n sbsg0\n (g17\n g2\n Ntp3755\n Rp3756\n (dp3757\n g21\n g23\n sg26\n-Vbin/molprobity.rna_validate\n+Vbin/phenix.holton_geometry_validation\n p3758\n sbg0\n (g17\n g2\n Ntp3759\n Rp3760\n (dp3761\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rna_validate.py\n+Vlib/python3/dist-packages/mmtbx/command_line/holton_geometry_validation.py\n p3762\n sbsg0\n (g17\n g2\n Ntp3763\n Rp3764\n (dp3765\n g21\n g23\n sg26\n-Vbin/phenix.model_idealization\n+Vbin/mmtbx.holton_geometry_validation\n p3766\n sbg0\n (g17\n g2\n Ntp3767\n Rp3768\n (dp3769\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/model_idealization.py\n+Vlib/python3/dist-packages/mmtbx/command_line/holton_geometry_validation.py\n p3770\n sbsg0\n (g17\n g2\n Ntp3771\n Rp3772\n (dp3773\n g21\n g23\n sg26\n-Vbin/phenix.fab_elbow_angle\n+Vbin/phenix.tls_as_xyz\n p3774\n sbg0\n (g17\n g2\n Ntp3775\n Rp3776\n (dp3777\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/fab_elbow_angle.py\n+Vlib/python3/dist-packages/mmtbx/command_line/tls_as_xyz.py\n p3778\n sbsg0\n (g17\n g2\n Ntp3779\n Rp3780\n (dp3781\n g21\n g23\n sg26\n-Vbin/phenix.perigee\n+Vbin/phenix.cbetadev\n p3782\n sbg0\n (g17\n g2\n Ntp3783\n Rp3784\n (dp3785\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/perigee.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cbetadev.py\n p3786\n sbsg0\n (g17\n g2\n Ntp3787\n Rp3788\n (dp3789\n g21\n g23\n sg26\n-Vbin/phenix.dynamics\n+Vbin/molprobity.cbetadev\n p3790\n sbg0\n (g17\n g2\n Ntp3791\n Rp3792\n (dp3793\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/dynamics.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cbetadev.py\n p3794\n sbsg0\n (g17\n g2\n Ntp3795\n Rp3796\n (dp3797\n g21\n g23\n sg26\n-Vbin/mmtbx.development.aev\n+Vbin/phenix.helix_sheet_recs_as_pdb_files\n p3798\n sbg0\n (g17\n g2\n Ntp3799\n Rp3800\n (dp3801\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/development.aev.py\n+Vlib/python3/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py\n p3802\n sbsg0\n (g17\n g2\n Ntp3803\n Rp3804\n (dp3805\n g21\n g23\n sg26\n-Vbin/mmtbx.emringer_score\n+Vbin/mmtbx.model_vs_data\n p3806\n sbg0\n (g17\n g2\n Ntp3807\n Rp3808\n (dp3809\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/emringer_score.py\n+Vlib/python3/dist-packages/mmtbx/command_line/model_vs_data.py\n p3810\n sbsg0\n (g17\n g2\n Ntp3811\n Rp3812\n (dp3813\n g21\n g23\n sg26\n-Vbin/mmtbx.arginine_geometry\n+Vbin/phenix.reciprocal_space_arrays\n p3814\n sbg0\n (g17\n g2\n Ntp3815\n Rp3816\n (dp3817\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/arginine_geometry.py\n+Vlib/python3/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py\n p3818\n sbsg0\n (g17\n g2\n Ntp3819\n Rp3820\n (dp3821\n g21\n g23\n sg26\n-Vbin/phenix.tls\n+Vbin/phenix.cablam_idealization\n p3822\n sbg0\n (g17\n g2\n Ntp3823\n Rp3824\n (dp3825\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/tls.py\n+Vlib/python3/dist-packages/mmtbx/command_line/cablam_idealization.py\n p3826\n sbsg0\n (g17\n g2\n Ntp3827\n Rp3828\n (dp3829\n g21\n g23\n sg26\n-Vbin/mmtbx.select_best_starting_model\n+Vbin/phenix.sisa\n p3830\n sbg0\n (g17\n g2\n Ntp3831\n Rp3832\n (dp3833\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/select_best_starting_model.py\n+Vlib/python3/dist-packages/mmtbx/command_line/sisa.py\n p3834\n sbsg0\n (g17\n g2\n Ntp3835\n Rp3836\n (dp3837\n g21\n g23\n sg26\n-Vbin/phenix.fmodel\n+Vbin/phenix.dynamics\n p3838\n sbg0\n (g17\n g2\n Ntp3839\n Rp3840\n (dp3841\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/fmodel.py\n+Vlib/python3/dist-packages/mmtbx/command_line/dynamics.py\n p3842\n sbsg0\n (g17\n g2\n Ntp3843\n Rp3844\n (dp3845\n g21\n g23\n sg26\n-Vbin/phenix.mask\n+Vbin/phenix.rna_validate_puckers\n p3846\n sbg0\n (g17\n g2\n Ntp3847\n Rp3848\n (dp3849\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mask.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_puckers.py\n p3850\n sbsg0\n (g17\n g2\n Ntp3851\n Rp3852\n (dp3853\n g21\n g23\n sg26\n-Vbin/mmtbx.prepare_pdb_deposition\n+Vbin/molprobity.rna_validate_puckers\n p3854\n sbg0\n (g17\n g2\n Ntp3855\n Rp3856\n (dp3857\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate_puckers.py\n p3858\n sbsg0\n (g17\n g2\n Ntp3859\n Rp3860\n (dp3861\n g21\n g23\n sg26\n-Vbin/mmtbx.development.electrons\n+Vbin/phenix.sort_hetatms\n p3862\n sbg0\n (g17\n g2\n Ntp3863\n Rp3864\n (dp3865\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/electrons.py\n+Vlib/python3/dist-packages/mmtbx/command_line/sort_hetatms.py\n p3866\n sbsg0\n (g17\n g2\n Ntp3867\n Rp3868\n (dp3869\n g21\n g23\n sg26\n-Vbin/mmtbx.validation_summary\n+Vbin/phenix.rna_validate\n p3870\n sbg0\n (g17\n g2\n Ntp3871\n Rp3872\n (dp3873\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/validation_summary.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate.py\n p3874\n sbsg0\n (g17\n g2\n Ntp3875\n Rp3876\n (dp3877\n g21\n g23\n sg26\n-Vbin/phenix.sisa\n+Vbin/molprobity.rna_validate\n p3878\n sbg0\n (g17\n g2\n Ntp3879\n Rp3880\n (dp3881\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/sisa.py\n+Vlib/python3/dist-packages/mmtbx/command_line/rna_validate.py\n p3882\n sbsg0\n (g17\n g2\n Ntp3883\n Rp3884\n (dp3885\n g21\n g23\n sg26\n-Vbin/phenix.rank_scale_map\n+Vbin/phenix.comparama\n p3886\n sbg0\n (g17\n g2\n Ntp3887\n Rp3888\n (dp3889\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/rank_scale_map.py\n+Vlib/python3/dist-packages/mmtbx/command_line/comparama.py\n p3890\n sbsg0\n (g17\n g2\n Ntp3891\n Rp3892\n (dp3893\n g21\n g23\n sg26\n-Vbin/phenix.mp_validate_bonds\n+Vbin/phenix.map_comparison\n p3894\n sbg0\n (g17\n g2\n Ntp3895\n Rp3896\n (dp3897\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mp_validate_bonds.py\n+Vlib/python3/dist-packages/mmtbx/command_line/map_comparison.py\n p3898\n sbsg0\n (g17\n g2\n Ntp3899\n Rp3900\n (dp3901\n g21\n g23\n sg26\n-Vbin/molprobity.mp_validate_bonds\n+Vbin/mmtbx.prepare_pdb_deposition\n p3902\n sbg0\n (g17\n g2\n Ntp3903\n Rp3904\n (dp3905\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/mp_validate_bonds.py\n+Vlib/python3/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py\n p3906\n sbsg0\n (g17\n g2\n Ntp3907\n Rp3908\n (dp3909\n g21\n g23\n sg26\n-Vbin/phenix.pdb_atom_selection\n+Vbin/mmtbx.prune_model\n p3910\n sbg0\n (g17\n g2\n Ntp3911\n Rp3912\n (dp3913\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/pdb_atom_selection.py\n+Vlib/python3/dist-packages/mmtbx/command_line/prune_model.py\n p3914\n sbsg0\n (g17\n g2\n Ntp3915\n Rp3916\n (dp3917\n g21\n g23\n sg26\n-Vbin/mmtbx.apply_ncs_to_ligand\n+Vbin/phenix.perigee\n p3918\n sbg0\n (g17\n g2\n Ntp3919\n Rp3920\n (dp3921\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py\n+Vlib/python3/dist-packages/mmtbx/command_line/perigee.py\n p3922\n sbsg0\n (g17\n g2\n Ntp3923\n Rp3924\n (dp3925\n g21\n g23\n sg26\n-Vbin/phenix.pdb_interpretation\n+Vbin/mmtbx.emringer_score\n p3926\n sbg0\n (g17\n g2\n Ntp3927\n Rp3928\n (dp3929\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/pdb_interpretation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/emringer_score.py\n p3930\n sbsg0\n (g17\n g2\n Ntp3931\n Rp3932\n (dp3933\n g21\n g23\n sg26\n-Vbin/mmtbx.pdb_interpretation\n+Vbin/mmtbx.validation_summary\n p3934\n sbg0\n (g17\n g2\n Ntp3935\n Rp3936\n (dp3937\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/pdb_interpretation.py\n+Vlib/python3/dist-packages/mmtbx/command_line/validation_summary.py\n p3938\n sbsg0\n (g17\n g2\n Ntp3939\n Rp3940\n (dp3941\n g21\n g23\n sg26\n-Vbin/mmtbx.show_r_factors_by_shell\n+Vbin/phenix.remove_outliers\n p3942\n sbg0\n (g17\n g2\n Ntp3943\n Rp3944\n (dp3945\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py\n+Vlib/python3/dist-packages/mmtbx/command_line/remove_outliers.py\n p3946\n sbsg0\n (g17\n g2\n Ntp3947\n Rp3948\n (dp3949\n g21\n g23\n sg26\n-Vbin/distl.sweep_strength\n+Vbin/distl.mp_spotfinder_server_read_file\n p3950\n sbg0\n (g17\n g2\n Ntp3951\n Rp3952\n (dp3953\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/spotfinder/command_line/sweep_strength.py\n+Vlib/python3/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py\n p3954\n sbsg0\n (g17\n g2\n Ntp3955\n Rp3956\n (dp3957\n g21\n g23\n sg26\n-Vbin/distl.image_viewer\n+Vbin/distl.sweep_strength\n p3958\n sbg0\n (g17\n g2\n Ntp3959\n Rp3960\n (dp3961\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/spotfinder/command_line/image_viewer.py\n+Vlib/python3/dist-packages/spotfinder/command_line/sweep_strength.py\n p3962\n sbsg0\n (g17\n g2\n Ntp3963\n Rp3964\n (dp3965\n@@ -10843,26 +10843,26 @@\n g2\n Ntp3971\n Rp3972\n (dp3973\n g21\n g23\n sg26\n-Vbin/distl.mp_spotfinder_server_read_file\n+Vbin/distl.image_viewer\n p3974\n sbg0\n (g17\n g2\n Ntp3975\n Rp3976\n (dp3977\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py\n+Vlib/python3/dist-packages/spotfinder/command_line/image_viewer.py\n p3978\n sbsg0\n (g17\n g2\n Ntp3979\n Rp3980\n (dp3981\n@@ -10931,180 +10931,180 @@\n g2\n Ntp4003\n Rp4004\n (dp4005\n g21\n g23\n sg26\n-Vbin/rstbx.simage.wx_display\n+Vbin/cctbx.image_viewer\n p4006\n sbg0\n (g17\n g2\n Ntp4007\n Rp4008\n (dp4009\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/simage.wx_display.py\n+Vlib/python3/dist-packages/rstbx/command_line/slip_viewer.py\n p4010\n sbsg0\n (g17\n g2\n Ntp4011\n Rp4012\n (dp4013\n g21\n g23\n sg26\n-Vbin/rstbx.index\n+Vbin/rstbx.simage.solver\n p4014\n sbg0\n (g17\n g2\n Ntp4015\n Rp4016\n (dp4017\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/index.py\n+Vlib/python3/dist-packages/rstbx/command_line/simage.solver.py\n p4018\n sbsg0\n (g17\n g2\n Ntp4019\n Rp4020\n (dp4021\n g21\n g23\n sg26\n-Vbin/cctbx.image_viewer\n+Vbin/phenix.example_viewer\n p4022\n sbg0\n (g17\n g2\n Ntp4023\n Rp4024\n (dp4025\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/slip_viewer.py\n+Vlib/python3/dist-packages/rstbx/command_line/example_viewer.py\n p4026\n sbsg0\n (g17\n g2\n Ntp4027\n Rp4028\n (dp4029\n g21\n g23\n sg26\n-Vbin/rstbx.simage.solver\n+Vbin/rstbx.index\n p4030\n sbg0\n (g17\n g2\n Ntp4031\n Rp4032\n (dp4033\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/simage.solver.py\n+Vlib/python3/dist-packages/rstbx/command_line/index.py\n p4034\n sbsg0\n (g17\n g2\n Ntp4035\n Rp4036\n (dp4037\n g21\n g23\n sg26\n-Vbin/rstbx.simage.create\n+Vbin/phenix.image_viewer\n p4038\n sbg0\n (g17\n g2\n Ntp4039\n Rp4040\n (dp4041\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/simage.create.py\n+Vlib/python3/dist-packages/rstbx/command_line/viewer.py\n p4042\n sbsg0\n (g17\n g2\n Ntp4043\n Rp4044\n (dp4045\n g21\n g23\n sg26\n-Vbin/phenix.example_viewer\n+Vbin/rstbx.simage.wx_display\n p4046\n sbg0\n (g17\n g2\n Ntp4047\n Rp4048\n (dp4049\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/example_viewer.py\n+Vlib/python3/dist-packages/rstbx/command_line/simage.wx_display.py\n p4050\n sbsg0\n (g17\n g2\n Ntp4051\n Rp4052\n (dp4053\n g21\n g23\n sg26\n-Vbin/phenix.image_viewer\n+Vbin/rstbx.simage.create\n p4054\n sbg0\n (g17\n g2\n Ntp4055\n Rp4056\n (dp4057\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/rstbx/command_line/viewer.py\n+Vlib/python3/dist-packages/rstbx/command_line/simage.create.py\n p4058\n sbsg0\n (g17\n g2\n Ntp4059\n Rp4060\n (dp4061\n g21\n g23\n sg26\n-Vbin/mmtbx.pdb_statistics\n+Vbin/wxtbx.inspect_r_free_flags\n p4062\n sbg0\n (g17\n g2\n Ntp4063\n Rp4064\n (dp4065\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/pdb_statistics.py\n+Vlib/python3/dist-packages/wxtbx/command_line/inspect_r_free_flags.py\n p4066\n sbsg0\n (g17\n g2\n Ntp4067\n Rp4068\n (dp4069\n@@ -11151,136 +11151,136 @@\n g2\n Ntp4083\n Rp4084\n (dp4085\n g21\n g23\n sg26\n-Vbin/wxtbx.plan_sad_experiment\n+Vbin/mmtbx.bfactor_plot\n p4086\n sbg0\n (g17\n g2\n Ntp4087\n Rp4088\n (dp4089\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/plan_sad_experiment.py\n+Vlib/python3/dist-packages/wxtbx/command_line/b_plot.py\n p4090\n sbsg0\n (g17\n g2\n Ntp4091\n Rp4092\n (dp4093\n g21\n g23\n sg26\n-Vbin/wxtbx.anomalous_differences_histogram\n+Vbin/wxtbx.show_file_info\n p4094\n sbg0\n (g17\n g2\n Ntp4095\n Rp4096\n (dp4097\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py\n+Vlib/python3/dist-packages/wxtbx/command_line/show_file_info.py\n p4098\n sbsg0\n (g17\n g2\n Ntp4099\n Rp4100\n (dp4101\n g21\n g23\n sg26\n-Vbin/mmtbx.bfactor_plot\n+Vbin/phenix.pdb_editor\n p4102\n sbg0\n (g17\n g2\n Ntp4103\n Rp4104\n (dp4105\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/b_plot.py\n+Vlib/python3/dist-packages/wxtbx/command_line/pdb_editor.py\n p4106\n sbsg0\n (g17\n g2\n Ntp4107\n Rp4108\n (dp4109\n g21\n g23\n sg26\n-Vbin/cctbx.loggraph\n+Vbin/wxtbx.plan_sad_experiment\n p4110\n sbg0\n (g17\n g2\n Ntp4111\n Rp4112\n (dp4113\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/loggraph.py\n+Vlib/python3/dist-packages/wxtbx/command_line/plan_sad_experiment.py\n p4114\n sbsg0\n (g17\n g2\n Ntp4115\n Rp4116\n (dp4117\n g21\n g23\n sg26\n-Vbin/phenix.pdb_editor\n+Vbin/cctbx.loggraph\n p4118\n sbg0\n (g17\n g2\n Ntp4119\n Rp4120\n (dp4121\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/pdb_editor.py\n+Vlib/python3/dist-packages/wxtbx/command_line/loggraph.py\n p4122\n sbsg0\n (g17\n g2\n Ntp4123\n Rp4124\n (dp4125\n g21\n g23\n sg26\n-Vbin/wxtbx.inspect_r_free_flags\n+Vbin/wxtbx.anomalous_differences_histogram\n p4126\n sbg0\n (g17\n g2\n Ntp4127\n Rp4128\n (dp4129\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/inspect_r_free_flags.py\n+Vlib/python3/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py\n p4130\n sbsg0\n (g17\n g2\n Ntp4131\n Rp4132\n (dp4133\n@@ -11305,477 +11305,477 @@\n g2\n Ntp4139\n Rp4140\n (dp4141\n g21\n g23\n sg26\n-Vbin/wxtbx.show_file_info\n+Vbin/cctbx.plot_anomalous_scattering\n p4142\n sbg0\n (g17\n g2\n Ntp4143\n Rp4144\n (dp4145\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/show_file_info.py\n+Vlib/python3/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py\n p4146\n sbsg0\n (g17\n g2\n Ntp4147\n Rp4148\n (dp4149\n g21\n g23\n sg26\n-Vbin/cctbx.plot_anomalous_scattering\n+Vbin/mmtbx.pdb_statistics\n p4150\n sbg0\n (g17\n g2\n Ntp4151\n Rp4152\n (dp4153\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py\n+Vlib/python3/dist-packages/wxtbx/command_line/pdb_statistics.py\n p4154\n sbsg0\n (g17\n g2\n Ntp4155\n Rp4156\n (dp4157\n g21\n g23\n sg26\n-Vbin/dev.dxtbx.debug_memory\n+Vbin/dxtbx.saturation\n p4158\n sbg0\n (g17\n g2\n Ntp4159\n Rp4160\n (dp4161\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/debug_memory.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/saturation.py\n p4162\n sbsg0\n (g17\n g2\n Ntp4163\n Rp4164\n (dp4165\n g21\n g23\n sg26\n-Vbin/dxtbx.radial_average\n+Vbin/dxtbx.overload\n p4166\n sbg0\n (g17\n g2\n Ntp4167\n Rp4168\n (dp4169\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/radial_average.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/overload.py\n p4170\n sbsg0\n (g17\n g2\n Ntp4171\n Rp4172\n (dp4173\n g21\n g23\n sg26\n-Vbin/dxtbx.install_format\n+Vbin/dxtbx.show_mask_info\n p4174\n sbg0\n (g17\n g2\n Ntp4175\n Rp4176\n (dp4177\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/install_format.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_mask_info.py\n p4178\n sbsg0\n (g17\n g2\n Ntp4179\n Rp4180\n (dp4181\n g21\n g23\n sg26\n-Vbin/dxtbx.print_header\n+Vbin/dxtbx.detector_superpose\n p4182\n sbg0\n (g17\n g2\n Ntp4183\n Rp4184\n (dp4185\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/print_header.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/detector_superpose.py\n p4186\n sbsg0\n (g17\n g2\n Ntp4187\n Rp4188\n (dp4189\n g21\n g23\n sg26\n-Vbin/dev.dxtbx.read_sequence\n+Vbin/dxtbx.dlsnxs2cbf\n p4190\n sbg0\n (g17\n g2\n Ntp4191\n Rp4192\n (dp4193\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/read_sequence.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/dlsnxs2cbf.py\n p4194\n sbsg0\n (g17\n g2\n Ntp4195\n Rp4196\n (dp4197\n g21\n g23\n sg26\n-Vbin/dxtbx.any2nexus\n+Vbin/dxtbx.show_matching_formats\n p4198\n sbg0\n (g17\n g2\n Ntp4199\n Rp4200\n (dp4201\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/any2nexus.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_matching_formats.py\n p4202\n sbsg0\n (g17\n g2\n Ntp4203\n Rp4204\n (dp4205\n g21\n g23\n sg26\n-Vbin/dxtbx.dlsnxs2cbf\n+Vbin/dev.dxtbx.read_sequence\n p4206\n sbg0\n (g17\n g2\n Ntp4207\n Rp4208\n (dp4209\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/dlsnxs2cbf.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/read_sequence.py\n p4210\n sbsg0\n (g17\n g2\n Ntp4211\n Rp4212\n (dp4213\n g21\n g23\n sg26\n-Vbin/dxtbx.overload\n+Vbin/dxtbx.depends_on\n p4214\n sbg0\n (g17\n g2\n Ntp4215\n Rp4216\n (dp4217\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/overload.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/depends_on.py\n p4218\n sbsg0\n (g17\n g2\n Ntp4219\n Rp4220\n (dp4221\n g21\n g23\n sg26\n-Vbin/dxtbx.depends_on\n+Vbin/dxtbx.show_registry\n p4222\n sbg0\n (g17\n g2\n Ntp4223\n Rp4224\n (dp4225\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/depends_on.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_registry.py\n p4226\n sbsg0\n (g17\n g2\n Ntp4227\n Rp4228\n (dp4229\n g21\n g23\n sg26\n-Vbin/dxtbx.saturation\n+Vbin/dxtbx.plot_detector_models\n p4230\n sbg0\n (g17\n g2\n Ntp4231\n Rp4232\n (dp4233\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/saturation.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/plot_detector_models.py\n p4234\n sbsg0\n (g17\n g2\n Ntp4235\n Rp4236\n (dp4237\n g21\n g23\n sg26\n-Vbin/dxtbx.show_registry\n+Vbin/dxtbx.display_parallax_correction\n p4238\n sbg0\n (g17\n g2\n Ntp4239\n Rp4240\n (dp4241\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_registry.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/display_parallax_correction.py\n p4242\n sbsg0\n (g17\n g2\n Ntp4243\n Rp4244\n (dp4245\n g21\n g23\n sg26\n-Vbin/dxtbx.image_average\n+Vbin/dxtbx.install_format\n p4246\n sbg0\n (g17\n g2\n Ntp4247\n Rp4248\n (dp4249\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image_average.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/install_format.py\n p4250\n sbsg0\n (g17\n g2\n Ntp4251\n Rp4252\n (dp4253\n g21\n g23\n sg26\n-Vbin/cxi.image_average\n+Vbin/dxtbx.print_matching_images\n p4254\n sbg0\n (g17\n g2\n Ntp4255\n Rp4256\n (dp4257\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image_average.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/print_matching_images.py\n p4258\n sbsg0\n (g17\n g2\n Ntp4259\n Rp4260\n (dp4261\n g21\n g23\n sg26\n-Vbin/dxtbx.show_mask_info\n+Vbin/dev.dxtbx.debug_memory\n p4262\n sbg0\n (g17\n g2\n Ntp4263\n Rp4264\n (dp4265\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_mask_info.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/debug_memory.py\n p4266\n sbsg0\n (g17\n g2\n Ntp4267\n Rp4268\n (dp4269\n g21\n g23\n sg26\n-Vbin/dxtbx.display_parallax_correction\n+Vbin/dxtbx.image_average\n p4270\n sbg0\n (g17\n g2\n Ntp4271\n Rp4272\n (dp4273\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/display_parallax_correction.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image_average.py\n p4274\n sbsg0\n (g17\n g2\n Ntp4275\n Rp4276\n (dp4277\n g21\n g23\n sg26\n-Vbin/dxtbx.print_matching_images\n+Vbin/cxi.image_average\n p4278\n sbg0\n (g17\n g2\n Ntp4279\n Rp4280\n (dp4281\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/print_matching_images.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image_average.py\n p4282\n sbsg0\n (g17\n g2\n Ntp4283\n Rp4284\n (dp4285\n g21\n g23\n sg26\n-Vbin/dxtbx.show_matching_formats\n+Vbin/dxtbx.print_header\n p4286\n sbg0\n (g17\n g2\n Ntp4287\n Rp4288\n (dp4289\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_matching_formats.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/print_header.py\n p4290\n sbsg0\n (g17\n g2\n Ntp4291\n Rp4292\n (dp4293\n g21\n g23\n sg26\n-Vbin/dxtbx.plot_detector_models\n+Vbin/dxtbx.any2nexus\n p4294\n sbg0\n (g17\n g2\n Ntp4295\n Rp4296\n (dp4297\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/plot_detector_models.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/any2nexus.py\n p4298\n sbsg0\n (g17\n g2\n Ntp4299\n Rp4300\n (dp4301\n g21\n g23\n sg26\n-Vbin/dxtbx.image2pickle\n+Vbin/dxtbx.radial_average\n p4302\n sbg0\n (g17\n g2\n Ntp4303\n Rp4304\n (dp4305\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image2pickle.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/radial_average.py\n p4306\n sbsg0\n (g17\n g2\n Ntp4307\n Rp4308\n (dp4309\n g21\n g23\n sg26\n-Vbin/cxi.image2pickle\n+Vbin/dxtbx.image2pickle\n p4310\n sbg0\n (g17\n g2\n Ntp4311\n Rp4312\n (dp4313\n@@ -11789,26 +11789,26 @@\n g2\n Ntp4315\n Rp4316\n (dp4317\n g21\n g23\n sg26\n-Vbin/dxtbx.detector_superpose\n+Vbin/cxi.image2pickle\n p4318\n sbg0\n (g17\n g2\n Ntp4319\n Rp4320\n (dp4321\n g21\n g23\n sg26\n-Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/detector_superpose.py\n+Vlib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image2pickle.py\n p4322\n sbsg0\n (g17\n g2\n Ntp4323\n Rp4324\n (dp4325\n"}]}]}]}]}