{"diffoscope-json-version": 1, "source1": "/srv/reproducible-results/rbuild-debian/r-b-build.zdZIQnA5/b1/tree-puzzle_5.3~rc16+dfsg-10_amd64.changes", "source2": "/srv/reproducible-results/rbuild-debian/r-b-build.zdZIQnA5/b2/tree-puzzle_5.3~rc16+dfsg-10_amd64.changes", "unified_diff": null, "details": [{"source1": "Files", "source2": "Files", "unified_diff": "@@ -1,6 +1,6 @@\n \n  90c81140ea5728c0314bfce9202dc420 373852 debug optional tree-ppuzzle-dbgsym_5.3~rc16+dfsg-10_amd64.deb\n  b9492c494648cdeb78275c4113b895d8 187188 science optional tree-ppuzzle_5.3~rc16+dfsg-10_amd64.deb\n  62cdb506e7769066662cec22fdeb447e 330424 debug optional tree-puzzle-dbgsym_5.3~rc16+dfsg-10_amd64.deb\n- 0a41eebeeb76f8ec6a54997af91152cd 431216 doc optional tree-puzzle-doc_5.3~rc16+dfsg-10_all.deb\n+ 849134390d44c15c34daf7d006b441c2 431256 doc optional tree-puzzle-doc_5.3~rc16+dfsg-10_all.deb\n  dd1d8d1b643f829846cb4bded1048b41 169896 science optional tree-puzzle_5.3~rc16+dfsg-10_amd64.deb\n"}, {"source1": "tree-puzzle-doc_5.3~rc16+dfsg-10_all.deb", "source2": "tree-puzzle-doc_5.3~rc16+dfsg-10_all.deb", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -1,3 +1,3 @@\n -rw-r--r--   0        0        0        4 2024-09-10 19:20:32.000000 debian-binary\n--rw-r--r--   0        0        0     3992 2024-09-10 19:20:32.000000 control.tar.xz\n--rw-r--r--   0        0        0   427032 2024-09-10 19:20:32.000000 data.tar.xz\n+-rw-r--r--   0        0        0     4004 2024-09-10 19:20:32.000000 control.tar.xz\n+-rw-r--r--   0        0        0   427060 2024-09-10 19:20:32.000000 data.tar.xz\n"}, {"source1": "control.tar.xz", "source2": "control.tar.xz", "unified_diff": null, "details": [{"source1": "control.tar", "source2": "control.tar", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "comments": ["Files differ"], "unified_diff": null}]}]}]}, {"source1": "data.tar.xz", "source2": "data.tar.xz", "unified_diff": null, "details": [{"source1": "data.tar", "source2": "data.tar", "unified_diff": null, "details": [{"source1": "./usr/share/doc/tree-puzzle/examples/tests/qp-hky-rhet-clock-nucl.nucl.puzzle", "source2": "./usr/share/doc/tree-puzzle/examples/tests/qp-hky-rhet-clock-nucl.nucl.puzzle", "unified_diff": "@@ -320,18 +320,18 @@\n  :\n  :-----1 Thylacinus\n  \n \n          branch  length     S.E.   branch  length     S.E.\n Thylacinus    1  0.13266  0.07077       9  0.14146  0.08889\n Sarcophilu    2  0.16398  0.05399      10  0.15536  0.07510\n-Dasyurus      3  0.00001  0.00399      11  0.07879  0.07178\n+Dasyurus      3  0.00001  0.00141      11  0.07879  0.07178\n Echymipera    4  0.20360  0.08378\n Trichosuru    5  0.15345  0.07805\n-Phalanger     6  0.18858  0.08737\n+Phalanger     6  0.18858  0.08736\n Philander     7  0.16082  0.07443     10 iterations until convergence\n Bos           8  0.30632  0.12025     log L: -569.50\n \n WARNING --- at least one branch length is close to an internal boundary!\n \n \n Consensus tree with maximum likelihood branch lengths\n"}, {"source1": "./usr/share/doc/tree-puzzle/examples/tests/qp-hky-rhet-nucl.nucl.puzzle", "source2": "./usr/share/doc/tree-puzzle/examples/tests/qp-hky-rhet-nucl.nucl.puzzle", "unified_diff": "@@ -320,18 +320,18 @@\n  :\n  :-----1 Thylacinus\n  \n \n          branch  length     S.E.   branch  length     S.E.\n Thylacinus    1  0.13266  0.07077       9  0.14146  0.08889\n Sarcophilu    2  0.16398  0.05399      10  0.15536  0.07510\n-Dasyurus      3  0.00001  0.00399      11  0.07879  0.07178\n+Dasyurus      3  0.00001  0.00141      11  0.07879  0.07178\n Echymipera    4  0.20360  0.08378\n Trichosuru    5  0.15345  0.07805\n-Phalanger     6  0.18858  0.08737\n+Phalanger     6  0.18858  0.08736\n Philander     7  0.16082  0.07443     10 iterations until convergence\n Bos           8  0.30632  0.12025     log L: -569.50\n \n WARNING --- at least one branch length is close to an internal boundary!\n \n \n Consensus tree with maximum likelihood branch lengths\n"}, {"source1": "./usr/share/doc/tree-puzzle/examples/tests/ut-pure-prot.trees.clean", "source2": "./usr/share/doc/tree-puzzle/examples/tests/ut-pure-prot.trees.clean", "unified_diff": "@@ -171,15 +171,15 @@\n  :             :-----------------7 LGB2_LUPLU\n  :\n  :-1 HBB_HUMAN\n  \n \n          branch  length     S.E.   branch  length     S.E.\n HBB_HUMAN     1  0.04  0.03       8  0.28  0.08\n-HBB_HORSE     2  0.12  0.03       9  0.00  9.00\n+HBB_HORSE     2  0.12  0.03       9  0.00  0.00\n HBA_HUMAN     3  0.02  0.02      10  0.40  0.12\n HBA_HORSE     4  0.09  0.03      11  0.60  0.11\n MYG_PHYCA     5  1.33  0.21\n GLB5_PETMA    6  0.70  0.14     9 iterations until convergence\n LGB2_LUPLU    7  1.76  0.28     log L: -1699.50\n \n WARNING --- at least one branch length is close to an internal boundary!\n"}, {"source1": "./usr/share/doc/tree-puzzle/examples/tests/ut-pure-prot.trees.puzzle", "source2": "./usr/share/doc/tree-puzzle/examples/tests/ut-pure-prot.trees.puzzle", "unified_diff": "@@ -171,15 +171,15 @@\n  :             :-----------------7 LGB2_LUPLU\n  :\n  :-1 HBB_HUMAN\n  \n \n          branch  length     S.E.   branch  length     S.E.\n HBB_HUMAN     1  0.04834  0.03148       8  0.28039  0.08746\n-HBB_HORSE     2  0.12686  0.03876       9  0.00001  9.00000\n+HBB_HORSE     2  0.12686  0.03876       9  0.00001  0.00100\n HBA_HUMAN     3  0.02653  0.02208      10  0.40361  0.12824\n HBA_HORSE     4  0.09440  0.03145      11  0.60481  0.11282\n MYG_PHYCA     5  1.33106  0.21114\n GLB5_PETMA    6  0.70107  0.14140     9 iterations until convergence\n LGB2_LUPLU    7  1.76830  0.28198     log L: -1699.50\n \n WARNING --- at least one branch length is close to an internal boundary!\n@@ -251,15 +251,15 @@\n  :             :-------6 GLB5_PETMA\n  :\n  :-1 HBB_HUMAN\n  \n \n          branch  length     S.E.   branch  length     S.E.\n HBB_HUMAN     1  0.04869  0.03153       8  0.27871  0.08717\n-HBB_HORSE     2  0.12653  0.03874       9  0.12334  0.15660\n+HBB_HORSE     2  0.12653  0.03874       9  0.12334  0.15661\n HBA_HUMAN     3  0.02634  0.02204      10  0.39110  0.12780\n HBA_HORSE     4  0.09459  0.03147      11  0.60627  0.11286\n MYG_PHYCA     5  1.22880  0.20960\n GLB5_PETMA    6  0.69972  0.14141     11 iterations until convergence\n LGB2_LUPLU    7  1.68480  0.28106     log L: -1699.32\n \n \n@@ -291,15 +291,15 @@\n  :\n  :-1 HBB_HUMAN\n  \n \n          branch  length     S.E.   branch  length     S.E.\n HBB_HUMAN     1  0.04834  0.03148       8  0.40364  0.12824\n HBB_HORSE     2  0.12685  0.03876       9  0.28040  0.08746\n-HBA_HUMAN     3  0.02653  0.02208      10  0.60481  0.11282\n+HBA_HUMAN     3  0.02653  0.02208      10  0.60481  0.11281\n HBA_HORSE     4  0.09440  0.03145\n MYG_PHYCA     5  1.33095  0.21112\n GLB5_PETMA    6  0.70107  0.14140     10 iterations until convergence\n LGB2_LUPLU    7  1.76831  0.28198     log L: -1699.50\n \n \n Unrooted user defined tree with maximum likelihood branch lengths\n"}]}]}]}]}