{"diffoscope-json-version": 1, "source1": "/srv/reproducible-results/rbuild-debian/r-b-build.NY7cVq88/b1/brian_2.4.2-6_armhf.changes", "source2": "/srv/reproducible-results/rbuild-debian/r-b-build.NY7cVq88/b2/brian_2.4.2-6_armhf.changes", "unified_diff": null, "details": [{"source1": "Files", "source2": "Files", "unified_diff": "@@ -1,5 +1,5 @@\n \n- e3537fba4cdc79ed0a7b9ef91bc5948b 1470540 doc optional python-brian-doc_2.4.2-6_all.deb\n+ 52eb905d58de756138fed66e48f4abb4 1470536 doc optional python-brian-doc_2.4.2-6_all.deb\n 32e5c9ec4855f0d944501360a7eca11a 438244 debug optional python3-brian-lib-dbgsym_2.4.2-6_armhf.deb\n 15d813454d24a2f3c77aa819f276ac79 76716 python optional python3-brian-lib_2.4.2-6_armhf.deb\n 42528303168e164beb2187ad395bcb25 467976 python optional python3-brian_2.4.2-6_all.deb\n"}, {"source1": "python-brian-doc_2.4.2-6_all.deb", "source2": "python-brian-doc_2.4.2-6_all.deb", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -1,3 +1,3 @@\n -rw-r--r-- 0 0 0 4 2021-02-20 20:42:14.000000 debian-binary\n--rw-r--r-- 0 0 0 33968 2021-02-20 20:42:14.000000 control.tar.xz\n--rw-r--r-- 0 0 0 1436380 2021-02-20 20:42:14.000000 data.tar.xz\n+-rw-r--r-- 0 0 0 33936 2021-02-20 20:42:14.000000 control.tar.xz\n+-rw-r--r-- 0 0 0 1436408 2021-02-20 20:42:14.000000 data.tar.xz\n"}, {"source1": "control.tar.xz", "source2": "control.tar.xz", "unified_diff": null, "details": [{"source1": "control.tar", "source2": "control.tar", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "comments": ["Files differ"], "unified_diff": null}]}]}]}, {"source1": "data.tar.xz", "source2": "data.tar.xz", "unified_diff": null, "details": [{"source1": "data.tar", "source2": "data.tar", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -187,15 +187,15 @@\n -rw-r--r-- 0 root (0) root (0) 2191 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/compartmental.spike_initiation.rst.txt\n -rw-r--r-- 0 root (0) root (0) 1679 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_2004.rst.txt\n -rw-r--r-- 0 root (0) root (0) 2812 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_2012.Fig1.rst.txt\n -rw-r--r-- 0 root (0) root (0) 2426 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_2012.Fig3AB.rst.txt\n -rw-r--r-- 0 root (0) root (0) 3467 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_2012.Fig3CF.rst.txt\n -rw-r--r-- 0 root (0) root (0) 2652 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_2012.Fig4.rst.txt\n -rw-r--r-- 0 root (0) root (0) 2617 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_2012.Fig5A.rst.txt\n--rw-r--r-- 0 root (0) root (0) 392 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_2012.README.txt.rst.txt\n+-rw-r--r-- 0 root (0) root (0) 393 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_2012.README.txt.rst.txt\n -rw-r--r-- 0 root (0) root (0) 1011 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_2012.params.rst.txt\n -rw-r--r-- 0 root (0) root (0) 2180 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_Gerstner_2005.rst.txt\n -rw-r--r-- 0 root (0) root (0) 2404 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_Guigon_2003.rst.txt\n -rw-r--r-- 0 root (0) root (0) 1995 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brunel_Hakim_1999.rst.txt\n -rw-r--r-- 0 root (0) root (0) 7718 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brunel_Wang_2001.rst.txt\n -rw-r--r-- 0 root (0) root (0) 8896 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Clopath_et_al_2010_homeostasis.rst.txt\n -rw-r--r-- 0 root (0) root (0) 8062 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Clopath_et_al_2010_no_homeostasis.rst.txt\n@@ -204,23 +204,23 @@\n -rw-r--r-- 0 root (0) root (0) 2538 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Hindmarsh_Rose_1984.rst.txt\n -rw-r--r-- 0 root (0) root (0) 5575 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Izhikevich_2007.rst.txt\n -rw-r--r-- 0 root (0) root (0) 7822 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Kremer_et_al_2011_barrel_cortex.rst.txt\n -rw-r--r-- 0 root (0) root (0) 3362 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Morris_Lecar_1981.rst.txt\n -rw-r--r-- 0 root (0) root (0) 3867 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Platkiewicz_Brette_2011.rst.txt\n -rw-r--r-- 0 root (0) root (0) 3321 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Rossant_et_al_2011bis.rst.txt\n -rw-r--r-- 0 root (0) root (0) 5626 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Rothman_Manis_2003.rst.txt\n--rw-r--r-- 0 root (0) root (0) 828 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.README.md.rst.txt\n+-rw-r--r-- 0 root (0) root (0) 829 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.README.md.rst.txt\n -rw-r--r-- 0 root (0) root (0) 9937 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.example_1_COBA.rst.txt\n -rw-r--r-- 0 root (0) root (0) 9865 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte.rst.txt\n -rw-r--r-- 0 root (0) root (0) 13592 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse.rst.txt\n -rw-r--r-- 0 root (0) root (0) 13198 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.example_4_rsmean.rst.txt\n -rw-r--r-- 0 root (0) root (0) 13798 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.example_4_synrel.rst.txt\n -rw-r--r-- 0 root (0) root (0) 7887 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring.rst.txt\n -rw-r--r-- 0 root (0) root (0) 16690 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro.rst.txt\n--rw-r--r-- 0 root (0) root (0) 321 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.figures.mplstyle.rst.txt\n+-rw-r--r-- 0 root (0) root (0) 322 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.figures.mplstyle.rst.txt\n -rw-r--r-- 0 root (0) root (0) 2519 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.plot_utils.rst.txt\n -rw-r--r-- 0 root (0) root (0) 3144 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Sturzl_et_al_2000.rst.txt\n -rw-r--r-- 0 root (0) root (0) 2233 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Touboul_Brette_2008.rst.txt\n -rw-r--r-- 0 root (0) root (0) 4685 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Vogels_et_al_2011.rst.txt\n -rw-r--r-- 0 root (0) root (0) 1967 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Wang_Buszaki_1996.rst.txt\n -rw-r--r-- 0 root (0) root (0) 4357 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/index.rst.txt\n -rw-r--r-- 0 root (0) root (0) 1294 2021-02-20 20:42:14.000000 ./usr/share/doc/python-brian-doc/docs/_sources/examples/non_reliability.rst.txt\n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_2012.README.txt.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Brette_2012.README.txt.rst.txt", "unified_diff": "@@ -1,9 +1,9 @@\n README.txt\n-=====================\n+======================\n \n .. code:: none\n \n \tThese are Brian scripts corresponding to the following paper:\n \t\n \tBrette R (2013). Sharpness of spike initiation in neurons explained by compartmentalization.\n \tPLoS Comp Biol, doi: 10.1371/journal.pcbi.1003338.\n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.README.md.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.README.md.rst.txt", "unified_diff": "@@ -1,9 +1,9 @@\n README.md\n-=====================\n+======================\n \n .. code:: none\n \n \tThese Brian scripts reproduce the figures from the following preprint:\n \t\n \tModeling neuron-glia interactions with the Brian 2 simulator\n \tMarcel Stimberg, Dan F. M. Goodman, Romain Brette, Maurizio De Pitt\u00e0\n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.figures.mplstyle.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/examples/frompapers.Stimberg_et_al_2018.figures.mplstyle.rst.txt", "unified_diff": "@@ -1,9 +1,9 @@\n figures.mplstyle\n-=====================\n+======================\n \n .. code:: none\n \n \taxes.linewidth : 1\n \txtick.labelsize : 8\n \tytick.labelsize : 8\n \taxes.labelsize : 8\n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.core.clocks.Clock.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.core.clocks.Clock.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -6,10 +6,10 @@\n (*Shortest import*: ``from brian2 import Clock)``\n \n .. autoclass:: Clock\n \n Tutorials and examples using this\n ---------------------------------\n \n-* Example :doc:`CUBA `\n * Example :doc:`COBAHH `\n+* Example :doc:`CUBA `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.core.functions.exprel.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.core.functions.exprel.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -6,16 +6,16 @@\n (*Shortest import*: ``from brian2.core.functions import exprel)``\n \n .. autoclass:: exprel\n \n Tutorials and examples using this\n ---------------------------------\n \n-* Example :doc:`IF_curve_Hodgkin_Huxley `\n * Example :doc:`COBAHH `\n-* Example :doc:`advanced/float_32_64_benchmark `\n-* Example :doc:`advanced/exprel_function `\n+* Example :doc:`IF_curve_Hodgkin_Huxley `\n * Example :doc:`frompapers/Wang_Buszaki_1996 `\n * Example :doc:`compartmental/lfp `\n-* Example :doc:`compartmental/hodgkin_huxley_1952 `\n * Example :doc:`compartmental/hh_with_spikes `\n+* Example :doc:`compartmental/hodgkin_huxley_1952 `\n+* Example :doc:`advanced/exprel_function `\n+* Example :doc:`advanced/float_32_64_benchmark `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.core.network.Network.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.core.network.Network.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -9,11 +9,11 @@\n \n Tutorials and examples using this\n ---------------------------------\n \n * Tutorial :doc:`3-intro-to-brian-simulations `\n * Example :doc:`IF_curve_LIF `\n * Example :doc:`IF_curve_Hodgkin_Huxley `\n+* Example :doc:`frompapers/Brunel_Wang_2001 `\n * Example :doc:`advanced/stochastic_odes `\n * Example :doc:`advanced/compare_GSL_to_conventional `\n-* Example :doc:`frompapers/Brunel_Wang_2001 `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.devices.device.Dummy.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.devices.device.Dummy.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -6,10 +6,10 @@\n (*Shortest import*: ``from brian2.devices.device import Dummy)``\n \n .. autoclass:: Dummy\n \n Tutorials and examples using this\n ---------------------------------\n \n-* Example :doc:`advanced/exprel_function `\n * Example :doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte `\n+* Example :doc:`advanced/exprel_function `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.equations.equations.Equations.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.equations.equations.Equations.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -6,17 +6,17 @@\n (*Shortest import*: ``from brian2 import Equations)``\n \n .. autoclass:: Equations\n \n Tutorials and examples using this\n ---------------------------------\n \n-* Example :doc:`IF_curve_Hodgkin_Huxley `\n * Example :doc:`COBAHH `\n-* Example :doc:`advanced/float_32_64_benchmark `\n-* Example :doc:`frompapers/Rossant_et_al_2011bis `\n+* Example :doc:`IF_curve_Hodgkin_Huxley `\n * Example :doc:`frompapers/Destexhe_et_al_1998 `\n+* Example :doc:`frompapers/Rossant_et_al_2011bis `\n * Example :doc:`frompapers/Diesmann_et_al_1999 `\n+* Example :doc:`frompapers/Clopath_et_al_2010_homeostasis `\n * Example :doc:`frompapers/Hindmarsh_Rose_1984 `\n * Example :doc:`frompapers/Clopath_et_al_2010_no_homeostasis `\n-* Example :doc:`frompapers/Clopath_et_al_2010_homeostasis `\n+* Example :doc:`advanced/float_32_64_benchmark `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.groups.neurongroup.NeuronGroup.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.groups.neurongroup.NeuronGroup.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -6,65 +6,65 @@\n (*Shortest import*: ``from brian2 import NeuronGroup)``\n \n .. autoclass:: NeuronGroup\n \n Tutorials and examples using this\n ---------------------------------\n \n+* Tutorial :doc:`3-intro-to-brian-simulations `\n * Tutorial :doc:`1-intro-to-brian-neurons `\n * Tutorial :doc:`2-intro-to-brian-synapses `\n-* Tutorial :doc:`3-intro-to-brian-simulations `\n-* Example :doc:`IF_curve_LIF `\n-* Example :doc:`adaptive_threshold `\n+* Example :doc:`reliability `\n+* Example :doc:`COBAHH `\n+* Example :doc:`non_reliability `\n * Example :doc:`phase_locking `\n * Example :doc:`CUBA `\n+* Example :doc:`adaptive_threshold `\n+* Example :doc:`IF_curve_LIF `\n * Example :doc:`IF_curve_Hodgkin_Huxley `\n-* Example :doc:`non_reliability `\n-* Example :doc:`reliability `\n-* Example :doc:`COBAHH `\n-* Example :doc:`advanced/custom_events `\n-* Example :doc:`advanced/float_32_64_benchmark `\n-* Example :doc:`advanced/stochastic_odes `\n-* Example :doc:`advanced/opencv_movie `\n-* Example :doc:`advanced/exprel_function `\n-* Example :doc:`advanced/compare_GSL_to_conventional `\n+* Example :doc:`standalone/STDP_standalone `\n+* Example :doc:`standalone/cuba_openmp `\n+* Example :doc:`synapses/synapses `\n+* Example :doc:`synapses/jeffress `\n+* Example :doc:`synapses/gapjunctions `\n+* Example :doc:`synapses/spatial_connections `\n+* Example :doc:`synapses/licklider `\n+* Example :doc:`synapses/efficient_gaussian_connectivity `\n+* Example :doc:`synapses/STDP `\n+* Example :doc:`synapses/state_variables `\n+* Example :doc:`synapses/nonlinear `\n+* Example :doc:`frompapers/Rothman_Manis_2003 `\n * Example :doc:`frompapers/Brette_2004 `\n-* Example :doc:`frompapers/Wang_Buszaki_1996 `\n+* Example :doc:`frompapers/Vogels_et_al_2011 `\n+* Example :doc:`frompapers/Brunel_Hakim_1999 `\n * Example :doc:`frompapers/Rossant_et_al_2011bis `\n-* Example :doc:`frompapers/Kremer_et_al_2011_barrel_cortex `\n-* Example :doc:`frompapers/Brunel_Wang_2001 `\n-* Example :doc:`frompapers/Diesmann_et_al_1999 `\n-* Example :doc:`frompapers/Hindmarsh_Rose_1984 `\n-* Example :doc:`frompapers/Brette_Gerstner_2005 `\n-* Example :doc:`frompapers/Platkiewicz_Brette_2011 `\n-* Example :doc:`frompapers/Rothman_Manis_2003 `\n-* Example :doc:`frompapers/Clopath_et_al_2010_no_homeostasis `\n * Example :doc:`frompapers/Morris_Lecar_1981 `\n-* Example :doc:`frompapers/Brette_Guigon_2003 `\n-* Example :doc:`frompapers/Brunel_Hakim_1999 `\n-* Example :doc:`frompapers/Izhikevich_2007 `\n+* Example :doc:`frompapers/Diesmann_et_al_1999 `\n * Example :doc:`frompapers/Sturzl_et_al_2000 `\n+* Example :doc:`frompapers/Brette_Gerstner_2005 `\n+* Example :doc:`frompapers/Wang_Buszaki_1996 `\n+* Example :doc:`frompapers/Brunel_Wang_2001 `\n * Example :doc:`frompapers/Clopath_et_al_2010_homeostasis `\n * Example :doc:`frompapers/Touboul_Brette_2008 `\n-* Example :doc:`frompapers/Vogels_et_al_2011 `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_1_COBA `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_5_astro_ring `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_4_synrel `\n+* Example :doc:`frompapers/Kremer_et_al_2011_barrel_cortex `\n+* Example :doc:`frompapers/Brette_Guigon_2003 `\n+* Example :doc:`frompapers/Hindmarsh_Rose_1984 `\n+* Example :doc:`frompapers/Izhikevich_2007 `\n+* Example :doc:`frompapers/Platkiewicz_Brette_2011 `\n+* Example :doc:`frompapers/Clopath_et_al_2010_no_homeostasis `\n * Example :doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean `\n * Example :doc:`frompapers/Stimberg_et_al_2018/example_3_io_synapse `\n-* Example :doc:`synapses/nonlinear `\n-* Example :doc:`synapses/gapjunctions `\n-* Example :doc:`synapses/efficient_gaussian_connectivity `\n-* Example :doc:`synapses/synapses `\n-* Example :doc:`synapses/STDP `\n-* Example :doc:`synapses/licklider `\n-* Example :doc:`synapses/jeffress `\n-* Example :doc:`synapses/state_variables `\n-* Example :doc:`synapses/spatial_connections `\n-* Example :doc:`standalone/cuba_openmp `\n-* Example :doc:`standalone/STDP_standalone `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_4_synrel `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_1_COBA `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_5_astro_ring `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte `\n * Example :doc:`compartmental/lfp `\n * Example :doc:`compartmental/bipolar_with_inputs2 `\n * Example :doc:`compartmental/bipolar_with_inputs `\n+* Example :doc:`advanced/exprel_function `\n+* Example :doc:`advanced/opencv_movie `\n+* Example :doc:`advanced/stochastic_odes `\n+* Example :doc:`advanced/compare_GSL_to_conventional `\n+* Example :doc:`advanced/float_32_64_benchmark `\n+* Example :doc:`advanced/custom_events `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.input.poissongroup.PoissonGroup.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.input.poissongroup.PoissonGroup.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -8,13 +8,13 @@\n .. autoclass:: PoissonGroup\n \n Tutorials and examples using this\n ---------------------------------\n \n * Tutorial :doc:`3-intro-to-brian-simulations `\n * Example :doc:`adaptive_threshold `\n-* Example :doc:`advanced/custom_events `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_4_synrel `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean `\n-* Example :doc:`synapses/STDP `\n * Example :doc:`standalone/STDP_standalone `\n+* Example :doc:`synapses/STDP `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_4_synrel `\n+* Example :doc:`advanced/custom_events `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.input.timedarray.TimedArray.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.input.timedarray.TimedArray.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -7,13 +7,13 @@\n \n .. autoclass:: TimedArray\n \n Tutorials and examples using this\n ---------------------------------\n \n * Tutorial :doc:`3-intro-to-brian-simulations `\n-* Example :doc:`frompapers/Brunel_Wang_2001 `\n+* Example :doc:`synapses/jeffress `\n * Example :doc:`frompapers/Sturzl_et_al_2000 `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro `\n+* Example :doc:`frompapers/Brunel_Wang_2001 `\n * Example :doc:`frompapers/Stimberg_et_al_2018/example_4_synrel `\n-* Example :doc:`synapses/jeffress `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.monitors.ratemonitor.PopulationRateMonitor.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.monitors.ratemonitor.PopulationRateMonitor.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -6,10 +6,10 @@\n (*Shortest import*: ``from brian2 import PopulationRateMonitor)``\n \n .. autoclass:: PopulationRateMonitor\n \n Tutorials and examples using this\n ---------------------------------\n \n-* Example :doc:`frompapers/Brunel_Wang_2001 `\n * Example :doc:`frompapers/Brunel_Hakim_1999 `\n+* Example :doc:`frompapers/Brunel_Wang_2001 `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.monitors.spikemonitor.SpikeMonitor.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.monitors.spikemonitor.SpikeMonitor.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -6,40 +6,40 @@\n (*Shortest import*: ``from brian2 import SpikeMonitor)``\n \n .. autoclass:: SpikeMonitor\n \n Tutorials and examples using this\n ---------------------------------\n \n-* Tutorial :doc:`1-intro-to-brian-neurons `\n * Tutorial :doc:`3-intro-to-brian-simulations `\n-* Example :doc:`IF_curve_LIF `\n-* Example :doc:`adaptive_threshold `\n+* Tutorial :doc:`1-intro-to-brian-neurons `\n+* Example :doc:`reliability `\n+* Example :doc:`non_reliability `\n * Example :doc:`phase_locking `\n * Example :doc:`CUBA `\n+* Example :doc:`adaptive_threshold `\n+* Example :doc:`IF_curve_LIF `\n * Example :doc:`IF_curve_Hodgkin_Huxley `\n-* Example :doc:`non_reliability `\n-* Example :doc:`reliability `\n-* Example :doc:`advanced/custom_events `\n-* Example :doc:`advanced/opencv_movie `\n+* Example :doc:`standalone/STDP_standalone `\n+* Example :doc:`standalone/cuba_openmp `\n+* Example :doc:`synapses/jeffress `\n+* Example :doc:`synapses/licklider `\n+* Example :doc:`synapses/STDP `\n * Example :doc:`frompapers/Brette_2004 `\n+* Example :doc:`frompapers/Vogels_et_al_2011 `\n+* Example :doc:`frompapers/Brunel_Hakim_1999 `\n * Example :doc:`frompapers/Rossant_et_al_2011bis `\n-* Example :doc:`frompapers/Brunel_Wang_2001 `\n * Example :doc:`frompapers/Diesmann_et_al_1999 `\n+* Example :doc:`frompapers/Sturzl_et_al_2000 `\n * Example :doc:`frompapers/Brette_Gerstner_2005 `\n-* Example :doc:`frompapers/Platkiewicz_Brette_2011 `\n+* Example :doc:`frompapers/Brunel_Wang_2001 `\n+* Example :doc:`frompapers/Touboul_Brette_2008 `\n * Example :doc:`frompapers/Brette_Guigon_2003 `\n-* Example :doc:`frompapers/Brunel_Hakim_1999 `\n * Example :doc:`frompapers/Izhikevich_2007 `\n-* Example :doc:`frompapers/Sturzl_et_al_2000 `\n-* Example :doc:`frompapers/Touboul_Brette_2008 `\n-* Example :doc:`frompapers/Vogels_et_al_2011 `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_1_COBA `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro `\n+* Example :doc:`frompapers/Platkiewicz_Brette_2011 `\n * Example :doc:`frompapers/Brette_2012/Fig5A `\n-* Example :doc:`synapses/STDP `\n-* Example :doc:`synapses/licklider `\n-* Example :doc:`synapses/jeffress `\n-* Example :doc:`standalone/cuba_openmp `\n-* Example :doc:`standalone/STDP_standalone `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_1_COBA `\n * Example :doc:`compartmental/hh_with_spikes `\n+* Example :doc:`advanced/opencv_movie `\n+* Example :doc:`advanced/custom_events `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.monitors.statemonitor.StateMonitor.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.monitors.statemonitor.StateMonitor.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -6,54 +6,54 @@\n (*Shortest import*: ``from brian2 import StateMonitor)``\n \n .. autoclass:: StateMonitor\n \n Tutorials and examples using this\n ---------------------------------\n \n+* Tutorial :doc:`3-intro-to-brian-simulations `\n * Tutorial :doc:`1-intro-to-brian-neurons `\n * Tutorial :doc:`2-intro-to-brian-synapses `\n-* Tutorial :doc:`3-intro-to-brian-simulations `\n-* Example :doc:`adaptive_threshold `\n-* Example :doc:`phase_locking `\n * Example :doc:`COBAHH `\n-* Example :doc:`advanced/custom_events `\n-* Example :doc:`advanced/stochastic_odes `\n-* Example :doc:`advanced/compare_GSL_to_conventional `\n-* Example :doc:`frompapers/Wang_Buszaki_1996 `\n-* Example :doc:`frompapers/Rossant_et_al_2011bis `\n-* Example :doc:`frompapers/Destexhe_et_al_1998 `\n-* Example :doc:`frompapers/Hindmarsh_Rose_1984 `\n-* Example :doc:`frompapers/Brette_Gerstner_2005 `\n-* Example :doc:`frompapers/Platkiewicz_Brette_2011 `\n+* Example :doc:`phase_locking `\n+* Example :doc:`adaptive_threshold `\n+* Example :doc:`standalone/STDP_standalone `\n+* Example :doc:`synapses/synapses `\n+* Example :doc:`synapses/jeffress `\n+* Example :doc:`synapses/gapjunctions `\n+* Example :doc:`synapses/STDP `\n+* Example :doc:`synapses/nonlinear `\n * Example :doc:`frompapers/Rothman_Manis_2003 `\n+* Example :doc:`frompapers/Destexhe_et_al_1998 `\n+* Example :doc:`frompapers/Rossant_et_al_2011bis `\n * Example :doc:`frompapers/Morris_Lecar_1981 `\n-* Example :doc:`frompapers/Brette_Guigon_2003 `\n-* Example :doc:`frompapers/Izhikevich_2007 `\n+* Example :doc:`frompapers/Brette_Gerstner_2005 `\n+* Example :doc:`frompapers/Wang_Buszaki_1996 `\n * Example :doc:`frompapers/Clopath_et_al_2010_homeostasis `\n * Example :doc:`frompapers/Touboul_Brette_2008 `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_1_COBA `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_5_astro_ring `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_4_synrel `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_3_io_synapse `\n-* Example :doc:`frompapers/Brette_2012/Fig3CF `\n+* Example :doc:`frompapers/Brette_Guigon_2003 `\n+* Example :doc:`frompapers/Hindmarsh_Rose_1984 `\n+* Example :doc:`frompapers/Izhikevich_2007 `\n+* Example :doc:`frompapers/Platkiewicz_Brette_2011 `\n * Example :doc:`frompapers/Brette_2012/Fig5A `\n-* Example :doc:`frompapers/Brette_2012/Fig4 `\n-* Example :doc:`frompapers/Brette_2012/Fig3AB `\n * Example :doc:`frompapers/Brette_2012/Fig1 `\n-* Example :doc:`synapses/nonlinear `\n-* Example :doc:`synapses/gapjunctions `\n-* Example :doc:`synapses/synapses `\n-* Example :doc:`synapses/STDP `\n-* Example :doc:`synapses/jeffress `\n-* Example :doc:`standalone/STDP_standalone `\n+* Example :doc:`frompapers/Brette_2012/Fig3AB `\n+* Example :doc:`frompapers/Brette_2012/Fig4 `\n+* Example :doc:`frompapers/Brette_2012/Fig3CF `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_3_io_synapse `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_4_synrel `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_1_COBA `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_5_astro_ring `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte `\n * Example :doc:`compartmental/lfp `\n-* Example :doc:`compartmental/hodgkin_huxley_1952 `\n-* Example :doc:`compartmental/bipolar_with_inputs2 `\n-* Example :doc:`compartmental/bipolar_with_inputs `\n-* Example :doc:`compartmental/spike_initiation `\n * Example :doc:`compartmental/infinite_cable `\n * Example :doc:`compartmental/hh_with_spikes `\n+* Example :doc:`compartmental/hodgkin_huxley_1952 `\n+* Example :doc:`compartmental/spike_initiation `\n+* Example :doc:`compartmental/bipolar_with_inputs2 `\n * Example :doc:`compartmental/bipolar_cell `\n+* Example :doc:`compartmental/bipolar_with_inputs `\n+* Example :doc:`advanced/stochastic_odes `\n+* Example :doc:`advanced/compare_GSL_to_conventional `\n+* Example :doc:`advanced/custom_events `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.spatialneuron.morphology.Cylinder.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.spatialneuron.morphology.Cylinder.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -7,23 +7,23 @@\n \n .. autoclass:: Cylinder\n \n Tutorials and examples using this\n ---------------------------------\n \n * Example :doc:`frompapers/Destexhe_et_al_1998 `\n-* Example :doc:`frompapers/Brette_2012/Fig3CF `\n * Example :doc:`frompapers/Brette_2012/Fig5A `\n-* Example :doc:`frompapers/Brette_2012/Fig3AB `\n * Example :doc:`frompapers/Brette_2012/Fig1 `\n-* Example :doc:`compartmental/lfp `\n-* Example :doc:`compartmental/hodgkin_huxley_1952 `\n-* Example :doc:`compartmental/bipolar_with_inputs2 `\n-* Example :doc:`compartmental/bipolar_with_inputs `\n+* Example :doc:`frompapers/Brette_2012/Fig3AB `\n+* Example :doc:`frompapers/Brette_2012/Fig3CF `\n * Example :doc:`compartmental/rall `\n-* Example :doc:`compartmental/spike_initiation `\n+* Example :doc:`compartmental/lfp `\n * Example :doc:`compartmental/infinite_cable `\n-* Example :doc:`compartmental/morphotest `\n * Example :doc:`compartmental/cylinder `\n * Example :doc:`compartmental/hh_with_spikes `\n+* Example :doc:`compartmental/hodgkin_huxley_1952 `\n+* Example :doc:`compartmental/spike_initiation `\n+* Example :doc:`compartmental/bipolar_with_inputs2 `\n+* Example :doc:`compartmental/morphotest `\n * Example :doc:`compartmental/bipolar_cell `\n+* Example :doc:`compartmental/bipolar_with_inputs `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.spatialneuron.morphology.Morphology.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.spatialneuron.morphology.Morphology.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -6,21 +6,21 @@\n (*Shortest import*: ``from brian2 import Morphology)``\n \n .. autoclass:: Morphology\n \n Tutorials and examples using this\n ---------------------------------\n \n-* Example :doc:`frompapers/Brette_2012/Fig3CF `\n * Example :doc:`frompapers/Brette_2012/Fig5A `\n-* Example :doc:`frompapers/Brette_2012/Fig4 `\n-* Example :doc:`frompapers/Brette_2012/Fig3AB `\n * Example :doc:`frompapers/Brette_2012/Fig1 `\n-* Example :doc:`compartmental/bipolar_with_inputs2 `\n-* Example :doc:`compartmental/bipolar_with_inputs `\n+* Example :doc:`frompapers/Brette_2012/Fig3AB `\n+* Example :doc:`frompapers/Brette_2012/Fig4 `\n+* Example :doc:`frompapers/Brette_2012/Fig3CF `\n * Example :doc:`compartmental/rall `\n-* Example :doc:`compartmental/spike_initiation `\n * Example :doc:`compartmental/infinite_cable `\n-* Example :doc:`compartmental/morphotest `\n * Example :doc:`compartmental/cylinder `\n+* Example :doc:`compartmental/spike_initiation `\n+* Example :doc:`compartmental/bipolar_with_inputs2 `\n+* Example :doc:`compartmental/morphotest `\n * Example :doc:`compartmental/bipolar_cell `\n+* Example :doc:`compartmental/bipolar_with_inputs `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.spatialneuron.morphology.Soma.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.spatialneuron.morphology.Soma.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -6,18 +6,18 @@\n (*Shortest import*: ``from brian2 import Soma)``\n \n .. autoclass:: Soma\n \n Tutorials and examples using this\n ---------------------------------\n \n-* Example :doc:`frompapers/Brette_2012/Fig3CF `\n * Example :doc:`frompapers/Brette_2012/Fig5A `\n-* Example :doc:`frompapers/Brette_2012/Fig4 `\n-* Example :doc:`frompapers/Brette_2012/Fig3AB `\n * Example :doc:`frompapers/Brette_2012/Fig1 `\n-* Example :doc:`compartmental/bipolar_with_inputs2 `\n-* Example :doc:`compartmental/bipolar_with_inputs `\n+* Example :doc:`frompapers/Brette_2012/Fig3AB `\n+* Example :doc:`frompapers/Brette_2012/Fig4 `\n+* Example :doc:`frompapers/Brette_2012/Fig3CF `\n * Example :doc:`compartmental/spike_initiation `\n+* Example :doc:`compartmental/bipolar_with_inputs2 `\n * Example :doc:`compartmental/morphotest `\n * Example :doc:`compartmental/bipolar_cell `\n+* Example :doc:`compartmental/bipolar_with_inputs `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.spatialneuron.spatialneuron.SpatialNeuron.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.spatialneuron.spatialneuron.SpatialNeuron.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -7,24 +7,24 @@\n \n .. autoclass:: SpatialNeuron\n \n Tutorials and examples using this\n ---------------------------------\n \n * Example :doc:`frompapers/Destexhe_et_al_1998 `\n-* Example :doc:`frompapers/Brette_2012/Fig3CF `\n * Example :doc:`frompapers/Brette_2012/Fig5A `\n-* Example :doc:`frompapers/Brette_2012/Fig4 `\n-* Example :doc:`frompapers/Brette_2012/Fig3AB `\n * Example :doc:`frompapers/Brette_2012/Fig1 `\n-* Example :doc:`compartmental/lfp `\n-* Example :doc:`compartmental/hodgkin_huxley_1952 `\n-* Example :doc:`compartmental/bipolar_with_inputs2 `\n-* Example :doc:`compartmental/bipolar_with_inputs `\n+* Example :doc:`frompapers/Brette_2012/Fig3AB `\n+* Example :doc:`frompapers/Brette_2012/Fig4 `\n+* Example :doc:`frompapers/Brette_2012/Fig3CF `\n * Example :doc:`compartmental/rall `\n-* Example :doc:`compartmental/spike_initiation `\n+* Example :doc:`compartmental/lfp `\n * Example :doc:`compartmental/infinite_cable `\n-* Example :doc:`compartmental/morphotest `\n * Example :doc:`compartmental/cylinder `\n * Example :doc:`compartmental/hh_with_spikes `\n+* Example :doc:`compartmental/hodgkin_huxley_1952 `\n+* Example :doc:`compartmental/spike_initiation `\n+* Example :doc:`compartmental/bipolar_with_inputs2 `\n+* Example :doc:`compartmental/morphotest `\n * Example :doc:`compartmental/bipolar_cell `\n+* Example :doc:`compartmental/bipolar_with_inputs `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.synapses.synapses.Synapses.rst.txt", "source2": "./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.synapses.synapses.Synapses.rst.txt", "comments": ["Ordering differences only"], "unified_diff": "@@ -6,47 +6,47 @@\n (*Shortest import*: ``from brian2 import Synapses)``\n \n .. autoclass:: Synapses\n \n Tutorials and examples using this\n ---------------------------------\n \n+* Tutorial :doc:`3-intro-to-brian-simulations `\n * Tutorial :doc:`1-intro-to-brian-neurons `\n * Tutorial :doc:`2-intro-to-brian-synapses `\n-* Tutorial :doc:`3-intro-to-brian-simulations `\n-* Example :doc:`adaptive_threshold `\n-* Example :doc:`CUBA `\n * Example :doc:`COBAHH `\n-* Example :doc:`advanced/custom_events `\n-* Example :doc:`advanced/float_32_64_benchmark `\n-* Example :doc:`frompapers/Kremer_et_al_2011_barrel_cortex `\n-* Example :doc:`frompapers/Brunel_Wang_2001 `\n-* Example :doc:`frompapers/Diesmann_et_al_1999 `\n-* Example :doc:`frompapers/Clopath_et_al_2010_no_homeostasis `\n+* Example :doc:`CUBA `\n+* Example :doc:`adaptive_threshold `\n+* Example :doc:`standalone/STDP_standalone `\n+* Example :doc:`standalone/cuba_openmp `\n+* Example :doc:`synapses/synapses `\n+* Example :doc:`synapses/jeffress `\n+* Example :doc:`synapses/gapjunctions `\n+* Example :doc:`synapses/spatial_connections `\n+* Example :doc:`synapses/licklider `\n+* Example :doc:`synapses/efficient_gaussian_connectivity `\n+* Example :doc:`synapses/STDP `\n+* Example :doc:`synapses/state_variables `\n+* Example :doc:`synapses/nonlinear `\n+* Example :doc:`frompapers/Vogels_et_al_2011 `\n * Example :doc:`frompapers/Brunel_Hakim_1999 `\n-* Example :doc:`frompapers/Izhikevich_2007 `\n+* Example :doc:`frompapers/Diesmann_et_al_1999 `\n * Example :doc:`frompapers/Sturzl_et_al_2000 `\n+* Example :doc:`frompapers/Brunel_Wang_2001 `\n * Example :doc:`frompapers/Clopath_et_al_2010_homeostasis `\n-* Example :doc:`frompapers/Vogels_et_al_2011 `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_1_COBA `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_5_astro_ring `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro `\n-* Example :doc:`frompapers/Stimberg_et_al_2018/example_4_synrel `\n+* Example :doc:`frompapers/Kremer_et_al_2011_barrel_cortex `\n+* Example :doc:`frompapers/Izhikevich_2007 `\n+* Example :doc:`frompapers/Clopath_et_al_2010_no_homeostasis `\n+* Example :doc:`frompapers/Brette_2012/Fig5A `\n * Example :doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean `\n * Example :doc:`frompapers/Stimberg_et_al_2018/example_3_io_synapse `\n-* Example :doc:`frompapers/Brette_2012/Fig5A `\n-* Example :doc:`synapses/nonlinear `\n-* Example :doc:`synapses/gapjunctions `\n-* Example :doc:`synapses/efficient_gaussian_connectivity `\n-* Example :doc:`synapses/synapses `\n-* Example :doc:`synapses/STDP `\n-* Example :doc:`synapses/licklider `\n-* Example :doc:`synapses/jeffress `\n-* Example :doc:`synapses/state_variables `\n-* Example :doc:`synapses/spatial_connections `\n-* Example :doc:`standalone/cuba_openmp `\n-* Example :doc:`standalone/STDP_standalone `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_4_synrel `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_1_COBA `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_5_astro_ring `\n+* Example :doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte `\n * Example :doc:`compartmental/lfp `\n * Example :doc:`compartmental/bipolar_with_inputs2 `\n * Example :doc:`compartmental/bipolar_with_inputs `\n+* Example :doc:`advanced/float_32_64_benchmark `\n+* Example :doc:`advanced/custom_events `\n \n"}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.core.clocks.Clock.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.core.clocks.Clock.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -116,16 +116,16 @@\n \n \n \n \n
\n

Tutorials and examples using this\u00b6

\n \n
\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -41,16 +41,16 @@\n considered identical.\n set_interval(self, start, end)\u00c2\u00b6\n Set the start and end time of the simulation.\n Sets the start and end value of the clock precisely if possible\n (using epsilon) or rounding up if not. This assures that multiple\n calls to Network.run will not re-run the same time step.\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n- * Example CUBA\n * Example COBAHH\n+ * Example CUBA\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.core.functions.exprel.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.core.functions.exprel.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -71,22 +71,22 @@\n \n \n \n \n
\n

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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -21,22 +21,22 @@\n fdiff([argindex]) Returns the first derivative of this function.\n Details\n classmethodeval(arg)[source]\u00c2\u00b6\n Returns a canonical form of cls applied to arguments args.\n fdiff(argindex=1)[source]\u00c2\u00b6\n Returns the first derivative of this function.\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n- * Example IF_curve_Hodgkin_Huxley\n * Example COBAHH\n- * Example advanced/float_32_64_benchmark\n- * Example advanced/exprel_function\n+ * Example IF_curve_Hodgkin_Huxley\n * Example frompapers/Wang_Buszaki_1996\n * Example compartmental/lfp\n- * Example compartmental/hodgkin_huxley_1952\n * Example compartmental/hh_with_spikes\n+ * Example compartmental/hodgkin_huxley_1952\n+ * Example advanced/exprel_function\n+ * Example advanced/float_32_64_benchmark\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.core.network.Network.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.core.network.Network.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -540,17 +540,17 @@\n \n
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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -330,17 +330,17 @@\n or versions. If you are interested in storing the state of a\n network for documentation or analysis purposes use\n Network.get_states instead.\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n * Tutorial 3-intro-to-brian-simulations\n * Example IF_curve_LIF\n * Example IF_curve_Hodgkin_Huxley\n+ * Example frompapers/Brunel_Wang_2001\n * Example advanced/stochastic_odes\n * Example advanced/compare_GSL_to_conventional\n- * Example frompapers/Brunel_Wang_2001\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.devices.device.Dummy.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.devices.device.Dummy.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -58,16 +58,16 @@\n \n \n \n \n
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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -14,16 +14,16 @@\n Dummy object\n Methods\n __call__(*args,\u00c2\u00a0**kwdsCall self as a function.\n Details\n __call__(*args, **kwds)[source]\u00c2\u00b6\n Call self as a function.\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n- * Example advanced/exprel_function\n * Example frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte\n+ * Example advanced/exprel_function\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.equations.equations.Equations.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.equations.equations.Equations.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -404,23 +404,23 @@\n
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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -194,23 +194,23 @@\n Parameters\n func : callable\n The function has to receive a single argument, the\n name of the identifier to check, and raise a\n ValueError if the identifier violates any rule.\n substitute(**kwds)[source]\u00c2\u00b6\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n- * Example IF_curve_Hodgkin_Huxley\n * Example COBAHH\n- * Example advanced/float_32_64_benchmark\n- * Example frompapers/Rossant_et_al_2011bis\n+ * Example IF_curve_Hodgkin_Huxley\n * Example frompapers/Destexhe_et_al_1998\n+ * Example frompapers/Rossant_et_al_2011bis\n * Example frompapers/Diesmann_et_al_1999\n+ * Example frompapers/Clopath_et_al_2010_homeostasis\n * Example frompapers/Hindmarsh_Rose_1984\n * Example frompapers/Clopath_et_al_2010_no_homeostasis\n- * Example frompapers/Clopath_et_al_2010_homeostasis\n+ * Example advanced/float_32_64_benchmark\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.groups.neurongroup.NeuronGroup.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.groups.neurongroup.NeuronGroup.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -359,71 +359,71 @@\n \n \n \n \n
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Tutorials and examples using this\u00b6

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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -184,71 +184,71 @@\n the namespace.\n Returns :\n \u00e2\u0080\u0094\u00e2\u0080\u0094- :\n var : VariableView or scalar value\n The state variable\u00e2\u0080\u0099s value that can be indexed\n (for non-scalar values).\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n+ * Tutorial 3-intro-to-brian-simulations\n * Tutorial 1-intro-to-brian-neurons\n * Tutorial 2-intro-to-brian-synapses\n- * Tutorial 3-intro-to-brian-simulations\n- * Example IF_curve_LIF\n- * Example adaptive_threshold\n+ * Example reliability\n+ * Example COBAHH\n+ * Example non_reliability\n * Example phase_locking\n * Example CUBA\n+ * Example adaptive_threshold\n+ * Example IF_curve_LIF\n * Example IF_curve_Hodgkin_Huxley\n- * Example non_reliability\n- * Example reliability\n- * Example COBAHH\n- * Example advanced/custom_events\n- * Example advanced/float_32_64_benchmark\n- * Example advanced/stochastic_odes\n- * Example advanced/opencv_movie\n- * Example advanced/exprel_function\n- * Example advanced/compare_GSL_to_conventional\n+ * Example standalone/STDP_standalone\n+ * Example standalone/cuba_openmp\n+ * Example synapses/synapses\n+ * Example synapses/jeffress\n+ * Example synapses/gapjunctions\n+ * Example synapses/spatial_connections\n+ * Example synapses/licklider\n+ * Example synapses/efficient_gaussian_connectivity\n+ * Example synapses/STDP\n+ * Example synapses/state_variables\n+ * Example synapses/nonlinear\n+ * Example frompapers/Rothman_Manis_2003\n * Example frompapers/Brette_2004\n- * Example frompapers/Wang_Buszaki_1996\n+ * Example frompapers/Vogels_et_al_2011\n+ * Example frompapers/Brunel_Hakim_1999\n * Example frompapers/Rossant_et_al_2011bis\n- * Example frompapers/Kremer_et_al_2011_barrel_cortex\n- * Example frompapers/Brunel_Wang_2001\n- * Example frompapers/Diesmann_et_al_1999\n- * Example frompapers/Hindmarsh_Rose_1984\n- * Example frompapers/Brette_Gerstner_2005\n- * Example frompapers/Platkiewicz_Brette_2011\n- * Example frompapers/Rothman_Manis_2003\n- * Example frompapers/Clopath_et_al_2010_no_homeostasis\n * Example frompapers/Morris_Lecar_1981\n- * Example frompapers/Brette_Guigon_2003\n- * Example frompapers/Brunel_Hakim_1999\n- * Example frompapers/Izhikevich_2007\n+ * Example frompapers/Diesmann_et_al_1999\n * Example frompapers/Sturzl_et_al_2000\n+ * Example frompapers/Brette_Gerstner_2005\n+ * Example frompapers/Wang_Buszaki_1996\n+ * Example frompapers/Brunel_Wang_2001\n * Example frompapers/Clopath_et_al_2010_homeostasis\n * Example frompapers/Touboul_Brette_2008\n- * Example frompapers/Vogels_et_al_2011\n- * Example frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte\n- * Example frompapers/Stimberg_et_al_2018/example_1_COBA\n- * Example frompapers/Stimberg_et_al_2018/example_5_astro_ring\n- * Example frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro\n- * Example frompapers/Stimberg_et_al_2018/example_4_synrel\n+ * Example frompapers/Kremer_et_al_2011_barrel_cortex\n+ * Example frompapers/Brette_Guigon_2003\n+ * Example frompapers/Hindmarsh_Rose_1984\n+ * Example frompapers/Izhikevich_2007\n+ * Example frompapers/Platkiewicz_Brette_2011\n+ * Example frompapers/Clopath_et_al_2010_no_homeostasis\n * Example frompapers/Stimberg_et_al_2018/example_4_rsmean\n * Example frompapers/Stimberg_et_al_2018/example_3_io_synapse\n- * Example synapses/nonlinear\n- * Example synapses/gapjunctions\n- * Example synapses/efficient_gaussian_connectivity\n- * Example synapses/synapses\n- * Example synapses/STDP\n- * Example synapses/licklider\n- * Example synapses/jeffress\n- * Example synapses/state_variables\n- * Example synapses/spatial_connections\n- * Example standalone/cuba_openmp\n- * Example standalone/STDP_standalone\n+ * Example frompapers/Stimberg_et_al_2018/example_4_synrel\n+ * Example frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro\n+ * Example frompapers/Stimberg_et_al_2018/example_1_COBA\n+ * Example frompapers/Stimberg_et_al_2018/example_5_astro_ring\n+ * Example frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte\n * Example compartmental/lfp\n * Example compartmental/bipolar_with_inputs2\n * Example compartmental/bipolar_with_inputs\n+ * Example advanced/exprel_function\n+ * Example advanced/opencv_movie\n+ * Example advanced/stochastic_odes\n+ * Example advanced/compare_GSL_to_conventional\n+ * Example advanced/float_32_64_benchmark\n+ * Example advanced/custom_events\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.input.poissongroup.PoissonGroup.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.input.poissongroup.PoissonGroup.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -126,19 +126,19 @@\n \n \n
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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -48,19 +48,19 @@\n The spikes returned by the most recent thresholding operation.\n before_run(run_namespace=None)[source]\u00c2\u00b6\n Optional method to prepare the object before a run.\n Called by Network.after_run before the main simulation loop starts.\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n * Tutorial 3-intro-to-brian-simulations\n * Example adaptive_threshold\n- * Example advanced/custom_events\n- * Example frompapers/Stimberg_et_al_2018/example_4_synrel\n- * Example frompapers/Stimberg_et_al_2018/example_4_rsmean\n- * Example synapses/STDP\n * Example standalone/STDP_standalone\n+ * Example synapses/STDP\n+ * Example frompapers/Stimberg_et_al_2018/example_4_rsmean\n+ * Example frompapers/Stimberg_et_al_2018/example_4_synrel\n+ * Example advanced/custom_events\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.input.timedarray.TimedArray.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.input.timedarray.TimedArray.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -153,19 +153,19 @@\n \n \n \n
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Tutorials and examples using this\u00b6

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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -85,19 +85,19 @@\n The length of a timestep (without units).\n Returns\n constant : bool\n Whether the results of this function can be\n considered constant over one timestep of length dt.\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n * Tutorial 3-intro-to-brian-simulations\n- * Example frompapers/Brunel_Wang_2001\n+ * Example synapses/jeffress\n * Example frompapers/Sturzl_et_al_2000\n- * Example frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro\n+ * Example frompapers/Brunel_Wang_2001\n * Example frompapers/Stimberg_et_al_2018/example_4_synrel\n- * Example synapses/jeffress\n+ * Example frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.monitors.ratemonitor.PopulationRateMonitor.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.monitors.ratemonitor.PopulationRateMonitor.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -156,16 +156,16 @@\n \n \n \n \n
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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -72,16 +72,16 @@\n The population rate in Hz, smoothed with the given\n window. Note that the rates are smoothed and not\n re-binned, i.e. the length of the returned array is\n the same as the length of the rate attribute and\n can be plotted against the PopulationRateMonitor\n \u00e2\u0080\u0098s t attribute.\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n- * Example frompapers/Brunel_Wang_2001\n * Example frompapers/Brunel_Hakim_1999\n+ * Example frompapers/Brunel_Wang_2001\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.monitors.spikemonitor.SpikeMonitor.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.monitors.spikemonitor.SpikeMonitor.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -264,46 +264,46 @@\n \n \n \n \n
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Tutorials and examples using this\u00b6

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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -154,46 +154,46 @@\n >>> run(10*ms)\n >>> counter2_values = mon.values('counter2')\n >>> print(counter2_values[0])\n [ 50 100]\n >>> print(counter2_values[1])\n [100]\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n- * Tutorial 1-intro-to-brian-neurons\n * Tutorial 3-intro-to-brian-simulations\n- * Example IF_curve_LIF\n- * Example adaptive_threshold\n+ * Tutorial 1-intro-to-brian-neurons\n+ * Example reliability\n+ * Example non_reliability\n * Example phase_locking\n * Example CUBA\n+ * Example adaptive_threshold\n+ * Example IF_curve_LIF\n * Example IF_curve_Hodgkin_Huxley\n- * Example non_reliability\n- * Example reliability\n- * Example advanced/custom_events\n- * Example advanced/opencv_movie\n+ * Example standalone/STDP_standalone\n+ * Example standalone/cuba_openmp\n+ * Example synapses/jeffress\n+ * Example synapses/licklider\n+ * Example synapses/STDP\n * Example frompapers/Brette_2004\n+ * Example frompapers/Vogels_et_al_2011\n+ * Example frompapers/Brunel_Hakim_1999\n * Example frompapers/Rossant_et_al_2011bis\n- * Example frompapers/Brunel_Wang_2001\n * Example frompapers/Diesmann_et_al_1999\n+ * Example frompapers/Sturzl_et_al_2000\n * Example frompapers/Brette_Gerstner_2005\n- * Example frompapers/Platkiewicz_Brette_2011\n+ * Example frompapers/Brunel_Wang_2001\n+ * Example frompapers/Touboul_Brette_2008\n * Example frompapers/Brette_Guigon_2003\n- * Example frompapers/Brunel_Hakim_1999\n * Example frompapers/Izhikevich_2007\n- * Example frompapers/Sturzl_et_al_2000\n- * Example frompapers/Touboul_Brette_2008\n- * Example frompapers/Vogels_et_al_2011\n- * Example frompapers/Stimberg_et_al_2018/example_1_COBA\n- * Example frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro\n+ * Example frompapers/Platkiewicz_Brette_2011\n * Example frompapers/Brette_2012/Fig5A\n- * Example synapses/STDP\n- * Example synapses/licklider\n- * Example synapses/jeffress\n- * Example standalone/cuba_openmp\n- * Example standalone/STDP_standalone\n+ * Example frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro\n+ * Example frompapers/Stimberg_et_al_2018/example_1_COBA\n * Example compartmental/hh_with_spikes\n+ * Example advanced/opencv_movie\n+ * Example advanced/custom_events\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.monitors.statemonitor.StateMonitor.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.monitors.statemonitor.StateMonitor.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -213,60 +213,60 @@\n
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Tutorials and examples using this\u00b6

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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -116,60 +116,60 @@\n >>> print(mon.t[:])\n [ 0. 100. 200. 300. 400. 500.] us\n >>> print(np.array_str(mon.v[:], precision=3))\n [[ 1. 0.98 0.961 0.942 0.923 0.905]]\n reinit()[source]\u00c2\u00b6\n resize(new_size)[source]\u00c2\u00b6\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n+ * Tutorial 3-intro-to-brian-simulations\n * Tutorial 1-intro-to-brian-neurons\n * Tutorial 2-intro-to-brian-synapses\n- * Tutorial 3-intro-to-brian-simulations\n- * Example adaptive_threshold\n- * Example phase_locking\n * Example COBAHH\n- * Example advanced/custom_events\n- * Example advanced/stochastic_odes\n- * Example advanced/compare_GSL_to_conventional\n- * Example frompapers/Wang_Buszaki_1996\n- * Example frompapers/Rossant_et_al_2011bis\n- * Example frompapers/Destexhe_et_al_1998\n- * Example frompapers/Hindmarsh_Rose_1984\n- * Example frompapers/Brette_Gerstner_2005\n- * Example frompapers/Platkiewicz_Brette_2011\n+ * Example phase_locking\n+ * Example adaptive_threshold\n+ * Example standalone/STDP_standalone\n+ * Example synapses/synapses\n+ * Example synapses/jeffress\n+ * Example synapses/gapjunctions\n+ * Example synapses/STDP\n+ * Example synapses/nonlinear\n * Example frompapers/Rothman_Manis_2003\n+ * Example frompapers/Destexhe_et_al_1998\n+ * Example frompapers/Rossant_et_al_2011bis\n * Example frompapers/Morris_Lecar_1981\n- * Example frompapers/Brette_Guigon_2003\n- * Example frompapers/Izhikevich_2007\n+ * Example frompapers/Brette_Gerstner_2005\n+ * Example frompapers/Wang_Buszaki_1996\n * Example frompapers/Clopath_et_al_2010_homeostasis\n * Example frompapers/Touboul_Brette_2008\n- * Example frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte\n- * Example frompapers/Stimberg_et_al_2018/example_1_COBA\n- * Example frompapers/Stimberg_et_al_2018/example_5_astro_ring\n- * Example frompapers/Stimberg_et_al_2018/example_4_synrel\n- * Example frompapers/Stimberg_et_al_2018/example_4_rsmean\n- * Example frompapers/Stimberg_et_al_2018/example_3_io_synapse\n- * Example frompapers/Brette_2012/Fig3CF\n+ * Example frompapers/Brette_Guigon_2003\n+ * Example frompapers/Hindmarsh_Rose_1984\n+ * Example frompapers/Izhikevich_2007\n+ * Example frompapers/Platkiewicz_Brette_2011\n * Example frompapers/Brette_2012/Fig5A\n- * Example frompapers/Brette_2012/Fig4\n- * Example frompapers/Brette_2012/Fig3AB\n * Example frompapers/Brette_2012/Fig1\n- * Example synapses/nonlinear\n- * Example synapses/gapjunctions\n- * Example synapses/synapses\n- * Example synapses/STDP\n- * Example synapses/jeffress\n- * Example standalone/STDP_standalone\n+ * Example frompapers/Brette_2012/Fig3AB\n+ * Example frompapers/Brette_2012/Fig4\n+ * Example frompapers/Brette_2012/Fig3CF\n+ * Example frompapers/Stimberg_et_al_2018/example_4_rsmean\n+ * Example frompapers/Stimberg_et_al_2018/example_3_io_synapse\n+ * Example frompapers/Stimberg_et_al_2018/example_4_synrel\n+ * Example frompapers/Stimberg_et_al_2018/example_1_COBA\n+ * Example frompapers/Stimberg_et_al_2018/example_5_astro_ring\n+ * Example frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte\n * Example compartmental/lfp\n- * Example compartmental/hodgkin_huxley_1952\n- * Example compartmental/bipolar_with_inputs2\n- * Example compartmental/bipolar_with_inputs\n- * Example compartmental/spike_initiation\n * Example compartmental/infinite_cable\n * Example compartmental/hh_with_spikes\n+ * Example compartmental/hodgkin_huxley_1952\n+ * Example compartmental/spike_initiation\n+ * Example compartmental/bipolar_with_inputs2\n * Example compartmental/bipolar_cell\n+ * Example compartmental/bipolar_with_inputs\n+ * Example advanced/stochastic_odes\n+ * Example advanced/compare_GSL_to_conventional\n+ * Example advanced/custom_events\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.spatialneuron.morphology.Cylinder.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.spatialneuron.morphology.Cylinder.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -195,29 +195,29 @@\n \n \n \n
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Tutorials and examples using this\u00b6

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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -87,29 +87,29 @@\n only, not re-creating the parent/children relation)\n Returns\n copy : Morphology\n A copy of this section (without the links to the\n parent/children)\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n * Example frompapers/Destexhe_et_al_1998\n- * Example frompapers/Brette_2012/Fig3CF\n * Example frompapers/Brette_2012/Fig5A\n- * Example frompapers/Brette_2012/Fig3AB\n * Example frompapers/Brette_2012/Fig1\n- * Example compartmental/lfp\n- * Example compartmental/hodgkin_huxley_1952\n- * Example compartmental/bipolar_with_inputs2\n- * Example compartmental/bipolar_with_inputs\n+ * Example frompapers/Brette_2012/Fig3AB\n+ * Example frompapers/Brette_2012/Fig3CF\n * Example compartmental/rall\n- * Example compartmental/spike_initiation\n+ * Example compartmental/lfp\n * Example compartmental/infinite_cable\n- * Example compartmental/morphotest\n * Example compartmental/cylinder\n * Example compartmental/hh_with_spikes\n+ * Example compartmental/hodgkin_huxley_1952\n+ * Example compartmental/spike_initiation\n+ * Example compartmental/bipolar_with_inputs2\n+ * Example compartmental/morphotest\n * Example compartmental/bipolar_cell\n+ * Example compartmental/bipolar_with_inputs\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.spatialneuron.morphology.Morphology.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.spatialneuron.morphology.Morphology.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -599,27 +599,27 @@\n \n \n \n \n
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Tutorials and examples using this\u00b6

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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -314,27 +314,27 @@\n Return a representation of the topology\n Returns\n topology : Topology\n An object representing the topology (can be\n converted to a string by using str(...) or simply\n by printing it with print.)\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n- * Example frompapers/Brette_2012/Fig3CF\n * Example frompapers/Brette_2012/Fig5A\n- * Example frompapers/Brette_2012/Fig4\n- * Example frompapers/Brette_2012/Fig3AB\n * Example frompapers/Brette_2012/Fig1\n- * Example compartmental/bipolar_with_inputs2\n- * Example compartmental/bipolar_with_inputs\n+ * Example frompapers/Brette_2012/Fig3AB\n+ * Example frompapers/Brette_2012/Fig4\n+ * Example frompapers/Brette_2012/Fig3CF\n * Example compartmental/rall\n- * Example compartmental/spike_initiation\n * Example compartmental/infinite_cable\n- * Example compartmental/morphotest\n * Example compartmental/cylinder\n+ * Example compartmental/spike_initiation\n+ * Example compartmental/bipolar_with_inputs2\n+ * Example compartmental/morphotest\n * Example compartmental/bipolar_cell\n+ * Example compartmental/bipolar_with_inputs\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.spatialneuron.morphology.Soma.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.spatialneuron.morphology.Soma.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -292,24 +292,24 @@\n \n \n \n \n
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Tutorials and examples using this\u00b6

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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -137,24 +137,24 @@\n Create a copy of the current section (attributes of this section\n only, not re-creating the parent/children relation)\n Returns\n copy : Morphology\n A copy of this section (without the links to the\n parent/children)\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n- * Example frompapers/Brette_2012/Fig3CF\n * Example frompapers/Brette_2012/Fig5A\n- * Example frompapers/Brette_2012/Fig4\n- * Example frompapers/Brette_2012/Fig3AB\n * Example frompapers/Brette_2012/Fig1\n- * Example compartmental/bipolar_with_inputs2\n- * Example compartmental/bipolar_with_inputs\n+ * Example frompapers/Brette_2012/Fig3AB\n+ * Example frompapers/Brette_2012/Fig4\n+ * Example frompapers/Brette_2012/Fig3CF\n * Example compartmental/spike_initiation\n+ * Example compartmental/bipolar_with_inputs2\n * Example compartmental/morphotest\n * Example compartmental/bipolar_cell\n+ * Example compartmental/bipolar_with_inputs\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.spatialneuron.spatialneuron.SpatialNeuron.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.spatialneuron.spatialneuron.SpatialNeuron.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -186,30 +186,30 @@\n \n \n \n
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Tutorials and examples using this\u00b6

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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -102,30 +102,30 @@\n SpatialSubgroup. If it does not exist, returns the Group attribute.\n staticspatialneuron_segment(neuron, item)[source]\u00c2\u00b6\n Selects a segment from SpatialNeuron neuron, where item is a slice\n of either compartment indexes or distances. Note a: segment is not\n a SpatialNeuron, only a Group.\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n * Example frompapers/Destexhe_et_al_1998\n- * Example frompapers/Brette_2012/Fig3CF\n * Example frompapers/Brette_2012/Fig5A\n- * Example frompapers/Brette_2012/Fig4\n- * Example frompapers/Brette_2012/Fig3AB\n * Example frompapers/Brette_2012/Fig1\n- * Example compartmental/lfp\n- * Example compartmental/hodgkin_huxley_1952\n- * Example compartmental/bipolar_with_inputs2\n- * Example compartmental/bipolar_with_inputs\n+ * Example frompapers/Brette_2012/Fig3AB\n+ * Example frompapers/Brette_2012/Fig4\n+ * Example frompapers/Brette_2012/Fig3CF\n * Example compartmental/rall\n- * Example compartmental/spike_initiation\n+ * Example compartmental/lfp\n * Example compartmental/infinite_cable\n- * Example compartmental/morphotest\n * Example compartmental/cylinder\n * Example compartmental/hh_with_spikes\n+ * Example compartmental/hodgkin_huxley_1952\n+ * Example compartmental/spike_initiation\n+ * Example compartmental/bipolar_with_inputs2\n+ * Example compartmental/morphotest\n * Example compartmental/bipolar_cell\n+ * Example compartmental/bipolar_with_inputs\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}, {"source1": "./usr/share/doc/python-brian-doc/docs/reference/brian2.synapses.synapses.Synapses.html", "source2": "./usr/share/doc/python-brian-doc/docs/reference/brian2.synapses.synapses.Synapses.html", "comments": ["Ordering differences only"], "unified_diff": "@@ -421,53 +421,53 @@\n \n \n \n \n
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Tutorials and examples using this\u00b6

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\n \n \n \n \n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -232,53 +232,53 @@\n register_variable(variable)[source]\u00c2\u00b6\n Register a DynamicArray to be automatically resized when the size\n of the indices change. Called automatically when a\n SynapticArrayVariable specifier is created.\n unregister_variable(variable)[source]\u00c2\u00b6\n Unregister a DynamicArray from the automatic resizing mechanism.\n ***** Tutorials and examples using this\u00c2\u00b6 *****\n+ * Tutorial 3-intro-to-brian-simulations\n * Tutorial 1-intro-to-brian-neurons\n * Tutorial 2-intro-to-brian-synapses\n- * Tutorial 3-intro-to-brian-simulations\n- * Example adaptive_threshold\n- * Example CUBA\n * Example COBAHH\n- * Example advanced/custom_events\n- * Example advanced/float_32_64_benchmark\n- * Example frompapers/Kremer_et_al_2011_barrel_cortex\n- * Example frompapers/Brunel_Wang_2001\n- * Example frompapers/Diesmann_et_al_1999\n- * Example frompapers/Clopath_et_al_2010_no_homeostasis\n+ * Example CUBA\n+ * Example adaptive_threshold\n+ * Example standalone/STDP_standalone\n+ * Example standalone/cuba_openmp\n+ * Example synapses/synapses\n+ * Example synapses/jeffress\n+ * Example synapses/gapjunctions\n+ * Example synapses/spatial_connections\n+ * Example synapses/licklider\n+ * Example synapses/efficient_gaussian_connectivity\n+ * Example synapses/STDP\n+ * Example synapses/state_variables\n+ * Example synapses/nonlinear\n+ * Example frompapers/Vogels_et_al_2011\n * Example frompapers/Brunel_Hakim_1999\n- * Example frompapers/Izhikevich_2007\n+ * Example frompapers/Diesmann_et_al_1999\n * Example frompapers/Sturzl_et_al_2000\n+ * Example frompapers/Brunel_Wang_2001\n * Example frompapers/Clopath_et_al_2010_homeostasis\n- * Example frompapers/Vogels_et_al_2011\n- * Example frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte\n- * Example frompapers/Stimberg_et_al_2018/example_1_COBA\n- * Example frompapers/Stimberg_et_al_2018/example_5_astro_ring\n- * Example frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro\n- * Example frompapers/Stimberg_et_al_2018/example_4_synrel\n+ * Example frompapers/Kremer_et_al_2011_barrel_cortex\n+ * Example frompapers/Izhikevich_2007\n+ * Example frompapers/Clopath_et_al_2010_no_homeostasis\n+ * Example frompapers/Brette_2012/Fig5A\n * Example frompapers/Stimberg_et_al_2018/example_4_rsmean\n * Example frompapers/Stimberg_et_al_2018/example_3_io_synapse\n- * Example frompapers/Brette_2012/Fig5A\n- * Example synapses/nonlinear\n- * Example synapses/gapjunctions\n- * Example synapses/efficient_gaussian_connectivity\n- * Example synapses/synapses\n- * Example synapses/STDP\n- * Example synapses/licklider\n- * Example synapses/jeffress\n- * Example synapses/state_variables\n- * Example synapses/spatial_connections\n- * Example standalone/cuba_openmp\n- * Example standalone/STDP_standalone\n+ * Example frompapers/Stimberg_et_al_2018/example_4_synrel\n+ * Example frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro\n+ * Example frompapers/Stimberg_et_al_2018/example_1_COBA\n+ * Example frompapers/Stimberg_et_al_2018/example_5_astro_ring\n+ * Example frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte\n * Example compartmental/lfp\n * Example compartmental/bipolar_with_inputs2\n * Example compartmental/bipolar_with_inputs\n+ * Example advanced/float_32_64_benchmark\n+ * Example advanced/custom_events\n [Logo]\n ****** Brian_2 ******\n **** Navigation ****\n * Introduction\n * User\u00e2\u0080\u0099s_guide\n * Advanced_guide\n * Examples\n"}]}]}]}]}]}