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807 ····"imports"·=·"····gtools·=·c(mixedsort·=·"mixedsort"),·markdown·=·c(markdownToHTML·=·"markdownToHTML"),·"807 ····"imports"·=·"····gtools·=·c(mixedsort·=·"mixedsort"),·markdown·=·c(markdownToHTML·=·"markdownToHTML"),·"
808 ····"imports"·=·"····reshape2·=·c(melt·=·"melt"),·rsconnect·=·c(deployApp·=·"deployApp"),·"808 ····"imports"·=·"····reshape2·=·c(melt·=·"melt"),·rsconnect·=·c(deployApp·=·"deployApp"),·"
809 ····"imports"·=·"····shinyjs·=·c(useShinyjs·=·"useShinyjs"),·shinythemes·=·c(shinytheme·=·"shinytheme"),·"809 ····"imports"·=·"····shinyjs·=·c(useShinyjs·=·"useShinyjs"),·shinythemes·=·c(shinytheme·=·"shinytheme"),·"
810 ····"imports"·=·"····stats·=·c(acf·=·"acf"),·stats·=·c(na.omit·=·"na.omit"),·stats·=·c(quantile·=·"quantile"),·"810 ····"imports"·=·"····stats·=·c(acf·=·"acf"),·stats·=·c(na.omit·=·"na.omit"),·stats·=·c(quantile·=·"quantile"),·"
811 ····"imports"·=·"····stats·=·c(time·=·"time"),·stats·=·c(var·=·"var"),·xtable·=·c(print.xtable·=·"print.xtable"),·"811 ····"imports"·=·"····stats·=·c(time·=·"time"),·stats·=·c(var·=·"var"),·xtable·=·c(print.xtable·=·"print.xtable"),·"
812 ····"imports"·=·"····xtable·=·c(xtable·=·"xtable"))"812 ····"imports"·=·"····xtable·=·c(xtable·=·"xtable"))"
813 ····"lazydata"·=·"<environment>"813 ····"lazydata"·=·"<environment>"
814 ····"path"·=·""/build/1st/r-cran-shinystan-2.5.0/debian/r-cran-shinystan/usr/lib/R/site-library/shinystan""814 ····"path"·=·""/build/2/r-cran-shinystan-2.5.0/2nd/debian/r-cran-shinystan/usr/lib/R/site-library/shinystan""
815 ····"spec"·=·"c(name·=·"shinystan",·version·=·"2.5.0")"815 ····"spec"·=·"c(name·=·"shinystan",·version·=·"2.5.0")"
816 }816 }
  
817 .__S3MethodsTable__.·(environment)·=·817 .__S3MethodsTable__.·(environment)·=·
818 {818 {
819 }819 }
  
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11 $variables$.__C__stanfit11 $variables$.__C__stanfit
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13 $variables$.__C__stanreg13 $variables$.__C__stanreg
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15 $variables$.__NAMESPACE__.15 $variables$.__NAMESPACE__.
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17 $variables$.__S3MethodsTable__.17 $variables$.__S3MethodsTable__.
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19 $variables$`.__T__as.shinystan:shinystan`19 $variables$`.__T__as.shinystan:shinystan`
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21 $variables$.deprecate_burnin21 $variables$.deprecate_burnin
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27 $variables$.from_rstan_csv27 $variables$.from_rstan_csv
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29 $variables$.mcmclist2matrix29 $variables$.mcmclist2matrix
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31 $variables$.onAttach31 $variables$.onAttach
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33 $variables$.onLoad33 $variables$.onLoad
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35 $variables$.packageName35 $variables$.packageName
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37 $variables$.ppc_lines37 $variables$.ppc_lines
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39 $variables$.rename_sampler_param39 $variables$.rename_sampler_param
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41 $variables$.rename_scalar41 $variables$.rename_scalar
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43 $variables$.retrieve43 $variables$.retrieve
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45 $variables$.rstan_max_treedepth45 $variables$.rstan_max_treedepth
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47 $variables$.rstan_sampler_params47 $variables$.rstan_sampler_params
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49 $variables$.rstan_summary49 $variables$.rstan_summary
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51 $variables$.rstan_warmup51 $variables$.rstan_warmup
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53 $variables$.rstanarm_pp_checks53 $variables$.rstanarm_pp_checks
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55 $variables$.set_param_dims55 $variables$.set_param_dims
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57 $variables$.sp_check57 $variables$.sp_check
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59 $variables$.sso_env59 $variables$.sso_env
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61 $variables$.stan_algorithm61 $variables$.stan_algorithm
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63 $variables$.stan_args63 $variables$.stan_args
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65 $variables$.stan_method65 $variables$.stan_method
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67 $variables$.used_vb67 $variables$.used_vb
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69 $variables$.validate_sampler_params69 $variables$.validate_sampler_params
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71 $variables$.which_rows71 $variables$.which_rows
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73 $variables$.write_files73 $variables$.write_files
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75 $variables$as.shinystan75 $variables$as.shinystan
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77 $variables$check_suggests77 $variables$check_suggests
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79 $variables$deploy_shinystan79 $variables$deploy_shinystan
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81 $variables$drop_parameters81 $variables$drop_parameters
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83 $variables$ess_rfun83 $variables$ess_rfun
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85 $variables$generate_quantity85 $variables$generate_quantity
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87 $variables$grepl_ic87 $variables$grepl_ic
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89 $variables$is.shinystan89 $variables$is.shinystan
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91 $variables$is.stanfit91 $variables$is.stanfit
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93 $variables$is.stanreg93 $variables$is.stanreg
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95 $variables$launch95 $variables$launch
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./usr/lib/R/site-library/shinystan/help/paths.rds
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paths.rds-content
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Rscript --vanilla -e 'args <- commandArgs(TRUE); readRDS(args[1])' {}
    
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1 ·[1]·"/build/1st/r-cran-shinystan-2.5.0/man/as.shinystan.Rd"·········1 ·[1]·"/build/2/r-cran-shinystan-2.5.0/2nd/man/as.shinystan.Rd"·········
2 ·[2]·"/build/1st/r-cran-shinystan-2.5.0/man/deploy_shinystan.Rd"·····2 ·[2]·"/build/2/r-cran-shinystan-2.5.0/2nd/man/deploy_shinystan.Rd"·····
3 ·[3]·"/build/1st/r-cran-shinystan-2.5.0/man/drop_parameters.Rd"······3 ·[3]·"/build/2/r-cran-shinystan-2.5.0/2nd/man/drop_parameters.Rd"······
4 ·[4]·"/build/1st/r-cran-shinystan-2.5.0/man/generate_quantity.Rd"····4 ·[4]·"/build/2/r-cran-shinystan-2.5.0/2nd/man/generate_quantity.Rd"····
5 ·[5]·"/build/1st/r-cran-shinystan-2.5.0/man/launch_shinystan.Rd"·····5 ·[5]·"/build/2/r-cran-shinystan-2.5.0/2nd/man/launch_shinystan.Rd"·····
6 ·[6]·"/build/1st/r-cran-shinystan-2.5.0/man/launch_shinystan_demo.Rd"6 ·[6]·"/build/2/r-cran-shinystan-2.5.0/2nd/man/launch_shinystan_demo.Rd"
7 ·[7]·"/build/1st/r-cran-shinystan-2.5.0/man/rename_model.Rd"·········7 ·[7]·"/build/2/r-cran-shinystan-2.5.0/2nd/man/rename_model.Rd"·········
8 ·[8]·"/build/1st/r-cran-shinystan-2.5.0/man/retrieve.Rd"·············8 ·[8]·"/build/2/r-cran-shinystan-2.5.0/2nd/man/retrieve.Rd"·············
9 ·[9]·"/build/1st/r-cran-shinystan-2.5.0/man/shinystan-class.Rd"······9 ·[9]·"/build/2/r-cran-shinystan-2.5.0/2nd/man/shinystan-class.Rd"······
10 [10]·"/build/1st/r-cran-shinystan-2.5.0/man/shinystan-metadata.Rd"···10 [10]·"/build/2/r-cran-shinystan-2.5.0/2nd/man/shinystan-metadata.Rd"···
11 [11]·"/build/1st/r-cran-shinystan-2.5.0/man/shinystan-package.Rd"····11 [11]·"/build/2/r-cran-shinystan-2.5.0/2nd/man/shinystan-package.Rd"····
12 [12]·"/build/1st/r-cran-shinystan-2.5.0/man/update_sso.Rd"···········12 [12]·"/build/2/r-cran-shinystan-2.5.0/2nd/man/update_sso.Rd"···········
13 attr(,"first")13 attr(,"first")
14 [1]·3914 [1]·41
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./usr/lib/R/site-library/shinystan/help/shinystan.rdb
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Rscript --vanilla - {}
    
Offset 324, 15 lines modifiedOffset 324, 15 lines modified
324 ········structure(list(structure("\n",·Rd_tag·=·"VERB"),·structure("######################\n",·Rd_tag·=·"VERB"),·324 ········structure(list(structure("\n",·Rd_tag·=·"VERB"),·structure("######################\n",·Rd_tag·=·"VERB"),·
325 ············structure("###·stanreg·object·###\n",·Rd_tag·=·"VERB"),·325 ············structure("###·stanreg·object·###\n",·Rd_tag·=·"VERB"),·
326 ············structure("######################\n",·Rd_tag·=·"VERB"),·326 ············structure("######################\n",·Rd_tag·=·"VERB"),·
327 ············structure("library(\"rstanarm\")\n",·Rd_tag·=·"VERB"),·327 ············structure("library(\"rstanarm\")\n",·Rd_tag·=·"VERB"),·
328 ············structure("example(\"example_model\")\n",·Rd_tag·=·"VERB"),·328 ············structure("example(\"example_model\")\n",·Rd_tag·=·"VERB"),·
329 ············structure("sso·<-·as.shinystan(example_model)\n",·Rd_tag·=·"VERB"),·329 ············structure("sso·<-·as.shinystan(example_model)\n",·Rd_tag·=·"VERB"),·
330 ············structure("launch_shinystan(sso)\n",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\dontrun"),·330 ············structure("launch_shinystan(sso)\n",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\dontrun"),·
331 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-shinystan-2.5.0/man/as.shinystan.Rd",·class·=·"Rd",·meta·=·list(331 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-shinystan-2.5.0/2nd/man/as.shinystan.Rd",·class·=·"Rd",·meta·=·list(
332 ····docType·=·"methods"),·prepared·=·3L)332 ····docType·=·"methods"),·prepared·=·3L)
  
333 deploy_shinystan·(list)·=·structure(list(structure(list(structure("Deploy·a·'ShinyStan'·app·on·the·web·using·'shinyapps.io'·by·'RStudio'",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·333 deploy_shinystan·(list)·=·structure(list(structure(list(structure("Deploy·a·'ShinyStan'·app·on·the·web·using·'shinyapps.io'·by·'RStudio'",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
334 ····structure(list(structure("deploy_shinystan",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·334 ····structure(list(structure("deploy_shinystan",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
335 ····structure(list(structure("deploy_shinystan",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·335 ····structure(list(structure("deploy_shinystan",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
336 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("Requires·a·(free·or·paid)·'ShinyApps'·account.·Visit\n",·Rd_tag·=·"TEXT"),·336 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("Requires·a·(free·or·paid)·'ShinyApps'·account.·Visit\n",·Rd_tag·=·"TEXT"),·
337 ········structure(list(structure("http://www.shinyapps.io/",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\url"),·337 ········structure(list(structure("http://www.shinyapps.io/",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\url"),·
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407 ········structure("\n",·Rd_tag·=·"VERB"),·structure("#·For·this·example·assume·sso·is·the·name·of·the·\\code{shinystan}·object·for\n",·Rd_tag·=·"VERB"),·407 ········structure("\n",·Rd_tag·=·"VERB"),·structure("#·For·this·example·assume·sso·is·the·name·of·the·\\code{shinystan}·object·for\n",·Rd_tag·=·"VERB"),·
408 ········structure("#·the·model·you·want·to·use.·Assume·also·that·you·want·to·name·your·app\n",·Rd_tag·=·"VERB"),·408 ········structure("#·the·model·you·want·to·use.·Assume·also·that·you·want·to·name·your·app\n",·Rd_tag·=·"VERB"),·
409 ········structure("#·'my-model'·and·that·your·shinyapps.io·username·is·'username'.\n",·Rd_tag·=·"VERB"),·409 ········structure("#·'my-model'·and·that·your·shinyapps.io·username·is·'username'.\n",·Rd_tag·=·"VERB"),·
410 ········structure("\n",·Rd_tag·=·"VERB"),·structure("deploy_shinystan(sso,·appName·=·\"my-model\",·account·=·\"username\")\n",·Rd_tag·=·"VERB"),·410 ········structure("\n",·Rd_tag·=·"VERB"),·structure("deploy_shinystan(sso,·appName·=·\"my-model\",·account·=·\"username\")\n",·Rd_tag·=·"VERB"),·
411 ········structure("\n",·Rd_tag·=·"VERB"),·structure("#·If·you·only·have·one·ShinyApps·account·configured·then·you·can·also·omit\n",·Rd_tag·=·"VERB"),·411 ········structure("\n",·Rd_tag·=·"VERB"),·structure("#·If·you·only·have·one·ShinyApps·account·configured·then·you·can·also·omit\n",·Rd_tag·=·"VERB"),·
412 ········structure("#·the·'account'·argument.\n",·Rd_tag·=·"VERB"),·412 ········structure("#·the·'account'·argument.\n",·Rd_tag·=·"VERB"),·
413 ········structure("\n",·Rd_tag·=·"VERB"),·structure("deploy_shinystan(sso,·appName·=·\"my-model\")\n",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\dontrun"),·413 ········structure("\n",·Rd_tag·=·"VERB"),·structure("deploy_shinystan(sso,·appName·=·\"my-model\")\n",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\dontrun"),·
414 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-shinystan-2.5.0/man/deploy_shinystan.Rd",·class·=·"Rd",·meta·=·list(414 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-shinystan-2.5.0/2nd/man/deploy_shinystan.Rd",·class·=·"Rd",·meta·=·list(
415 ····docType·=·character(0)),·prepared·=·3L)415 ····docType·=·character(0)),·prepared·=·3L)
  
416 drop_parameters·(list)·=·structure(list(structure(list(structure("Drop·parameters·from·a·",·Rd_tag·=·"TEXT"),·416 drop_parameters·(list)·=·structure(list(structure(list(structure("Drop·parameters·from·a·",·Rd_tag·=·"TEXT"),·
417 ····structure(list(structure("shinystan",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·417 ····structure(list(structure("shinystan",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·
418 ····structure("·object",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·418 ····structure("·object",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
419 ····structure(list(structure("drop_parameters",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·419 ····structure(list(structure("drop_parameters",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
420 ····structure(list(structure("drop_parameters",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·420 ····structure(list(structure("drop_parameters",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
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459 ········structure("print(eight_schools@param_names)\n",·Rd_tag·=·"RCODE"),·459 ········structure("print(eight_schools@param_names)\n",·Rd_tag·=·"RCODE"),·
460 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Remove·the·scalar·parameters·mu·and·tau\n",·Rd_tag·=·"RCODE"),·460 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Remove·the·scalar·parameters·mu·and·tau\n",·Rd_tag·=·"RCODE"),·
461 ········structure("sso·<-·drop_parameters(eight_schools,·pars·=·c(\"mu\",·\"tau\"))\n",·Rd_tag·=·"RCODE"),·461 ········structure("sso·<-·drop_parameters(eight_schools,·pars·=·c(\"mu\",·\"tau\"))\n",·Rd_tag·=·"RCODE"),·
462 ········structure("print(sso@param_names)\n",·Rd_tag·=·"RCODE"),·462 ········structure("print(sso@param_names)\n",·Rd_tag·=·"RCODE"),·
463 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Remove·all·elements·of·the·parameter·vector·theta\n",·Rd_tag·=·"RCODE"),·463 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Remove·all·elements·of·the·parameter·vector·theta\n",·Rd_tag·=·"RCODE"),·
464 ········structure("sso·<-·drop_parameters(sso,·pars·=·\"theta\")\n",·Rd_tag·=·"RCODE"),·464 ········structure("sso·<-·drop_parameters(sso,·pars·=·\"theta\")\n",·Rd_tag·=·"RCODE"),·
465 ········structure("print(sso@param_names)\n",·Rd_tag·=·"RCODE"),·465 ········structure("print(sso@param_names)\n",·Rd_tag·=·"RCODE"),·
466 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-shinystan-2.5.0/man/drop_parameters.Rd",·class·=·"Rd",·meta·=·list(466 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-shinystan-2.5.0/2nd/man/drop_parameters.Rd",·class·=·"Rd",·meta·=·list(
467 ····docType·=·character(0)),·prepared·=·3L)467 ····docType·=·character(0)),·prepared·=·3L)
  
468 generate_quantity·(list)·=·structure(list(structure(list(structure("Add·new·quantity·to·shinystan·object",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·468 generate_quantity·(list)·=·structure(list(structure(list(structure("Add·new·quantity·to·shinystan·object",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
469 ····structure(list(structure("generate_quantity",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·469 ····structure(list(structure("generate_quantity",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
470 ····structure(list(structure("generate_quantity",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·470 ····structure(list(structure("generate_quantity",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
471 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("Add·to·shinystan·object·a·new·parameter·as·a·function·of·one·or·two·existing\n",·Rd_tag·=·"TEXT"),·471 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("Add·to·shinystan·object·a·new·parameter·as·a·function·of·one·or·two·existing\n",·Rd_tag·=·"TEXT"),·
472 ········structure("parameters.\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·472 ········structure("parameters.\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·
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502 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Using·example·shinystan·object·'eight_schools'\n",·Rd_tag·=·"RCODE"),·502 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Using·example·shinystan·object·'eight_schools'\n",·Rd_tag·=·"RCODE"),·
503 ········structure("sso·<-·eight_schools\n",·Rd_tag·=·"RCODE"),·503 ········structure("sso·<-·eight_schools\n",·Rd_tag·=·"RCODE"),·
504 ········structure("sso·<-·generate_quantity(sso,·fun·=·function(x)·x^2,·\n",·Rd_tag·=·"RCODE"),·504 ········structure("sso·<-·generate_quantity(sso,·fun·=·function(x)·x^2,·\n",·Rd_tag·=·"RCODE"),·
505 ········structure("·························param1·=·\"tau\",·new_name·=·\"tau_sq\")\n",·Rd_tag·=·"RCODE"),·505 ········structure("·························param1·=·\"tau\",·new_name·=·\"tau_sq\")\n",·Rd_tag·=·"RCODE"),·
506 ········structure("sso·<-·generate_quantity(sso,·fun·=·\"-\",·\n",·Rd_tag·=·"RCODE"),·506 ········structure("sso·<-·generate_quantity(sso,·fun·=·\"-\",·\n",·Rd_tag·=·"RCODE"),·
507 ········structure("·························param1·=·\"theta[1]\",·param2·=·\"theta[2]\",·\n",·Rd_tag·=·"RCODE"),·507 ········structure("·························param1·=·\"theta[1]\",·param2·=·\"theta[2]\",·\n",·Rd_tag·=·"RCODE"),·
508 ········structure("·························new_name·=·\"theta1minus2\")\n",·Rd_tag·=·"RCODE"),·508 ········structure("·························new_name·=·\"theta1minus2\")\n",·Rd_tag·=·"RCODE"),·
509 ········structure("·························\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-shinystan-2.5.0/man/generate_quantity.Rd",·class·=·"Rd",·meta·=·list(509 ········structure("·························\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-shinystan-2.5.0/2nd/man/generate_quantity.Rd",·class·=·"Rd",·meta·=·list(
510 ····docType·=·character(0)),·prepared·=·3L)510 ····docType·=·character(0)),·prepared·=·3L)
  
511 hideOutput·(NULL)·=·NULL511 hideOutput·(NULL)·=·NULL
  
512 launch_shinystan·(list)·=·structure(list(structure(list(structure("Launch·the·'ShinyStan'·app",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·512 launch_shinystan·(list)·=·structure(list(structure(list(structure("Launch·the·'ShinyStan'·app",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
513 ····structure(list(structure("launch_shinystan",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·513 ····structure(list(structure("launch_shinystan",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
514 ····structure(list(structure("launch_shinystan",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·514 ····structure(list(structure("launch_shinystan",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
Offset 609, 15 lines modifiedOffset 609, 15 lines modified
609 ········structure("sf_sso·<-·launch_shinystan(sf)\n",·Rd_tag·=·"VERB"),·609 ········structure("sf_sso·<-·launch_shinystan(sf)\n",·Rd_tag·=·"VERB"),·
610 ········structure("\n",·Rd_tag·=·"VERB"),·structure("#·Now·sf_sso·is·a·shinystan·object·and·so·Example·1·(above)·applies·when\n",·Rd_tag·=·"VERB"),·610 ········structure("\n",·Rd_tag·=·"VERB"),·structure("#·Now·sf_sso·is·a·shinystan·object·and·so·Example·1·(above)·applies·when\n",·Rd_tag·=·"VERB"),·
611 ········structure("#·using·sf_sso.·\n",·Rd_tag·=·"VERB"),·structure("\n",·Rd_tag·=·"VERB"),·611 ········structure("#·using·sf_sso.·\n",·Rd_tag·=·"VERB"),·structure("\n",·Rd_tag·=·"VERB"),·
612 ········structure("#######################################\n",·Rd_tag·=·"VERB"),·612 ········structure("#######################################\n",·Rd_tag·=·"VERB"),·
613 ········structure("#·Example·3:·'fit'·is·an·mcmc.list,·array·or·list·of·matrices\n",·Rd_tag·=·"VERB"),·613 ········structure("#·Example·3:·'fit'·is·an·mcmc.list,·array·or·list·of·matrices\n",·Rd_tag·=·"VERB"),·
614 ········structure("#######################################\n",·Rd_tag·=·"VERB"),·614 ········structure("#######################################\n",·Rd_tag·=·"VERB"),·
615 ········structure("\n",·Rd_tag·=·"VERB"),·structure("#·First·create·shinystan·object·(see·?as.shinystan)·for·full·details)\n",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\dontrun"),·615 ········structure("\n",·Rd_tag·=·"VERB"),·structure("#·First·create·shinystan·object·(see·?as.shinystan)·for·full·details)\n",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\dontrun"),·
616 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-shinystan-2.5.0/man/launch_shinystan.Rd",·class·=·"Rd",·meta·=·list(616 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-shinystan-2.5.0/2nd/man/launch_shinystan.Rd",·class·=·"Rd",·meta·=·list(
617 ····docType·=·character(0)),·prepared·=·3L)617 ····docType·=·character(0)),·prepared·=·3L)
  
618 launch_shinystan_demo·(list)·=·structure(list(structure(list(structure("'ShinyStan'·demo",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·618 launch_shinystan_demo·(list)·=·structure(list(structure(list(structure("'ShinyStan'·demo",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
619 ····structure(list(structure("launch_shinystan_demo",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·619 ····structure(list(structure("launch_shinystan_demo",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
620 ····structure(list(structure("launch_shinystan_demo",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·620 ····structure(list(structure("launch_shinystan_demo",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
621 ····structure(list(structure("eight_schools",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·621 ····structure(list(structure("eight_schools",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
622 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("'ShinyStan'·demo\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·622 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("'ShinyStan'·demo\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·
Offset 666, 15 lines modifiedOffset 666, 15 lines modified
666 ············structure("shinystan",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·666 ············structure("shinystan",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·
667 ········structure("·objects.\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\seealso"),·667 ········structure("·objects.\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\seealso"),·
668 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure(list(668 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure(list(
669 ········structure("\n",·Rd_tag·=·"VERB"),·structure("#·launch·demo·but·don't·save·a·shinystan·object\n",·Rd_tag·=·"VERB"),·669 ········structure("\n",·Rd_tag·=·"VERB"),·structure("#·launch·demo·but·don't·save·a·shinystan·object\n",·Rd_tag·=·"VERB"),·
670 ········structure("launch_shinystan_demo()·\n",·Rd_tag·=·"VERB"),·670 ········structure("launch_shinystan_demo()·\n",·Rd_tag·=·"VERB"),·
671 ········structure("\n",·Rd_tag·=·"VERB"),·structure("#·launch·demo·and·save·the·shinystan·object·for·the·demo·\n",·Rd_tag·=·"VERB"),·671 ········structure("\n",·Rd_tag·=·"VERB"),·structure("#·launch·demo·and·save·the·shinystan·object·for·the·demo·\n",·Rd_tag·=·"VERB"),·
672 ········structure("sso_demo·<-·launch_shinystan_demo()\n",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\dontrun"),·672 ········structure("sso_demo·<-·launch_shinystan_demo()\n",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\dontrun"),·
673 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-shinystan-2.5.0/man/launch_shinystan_demo.Rd",·class·=·"Rd",·meta·=·list(673 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-shinystan-2.5.0/2nd/man/launch_shinystan_demo.Rd",·class·=·"Rd",·meta·=·list(
674 ····docType·=·character(0)),·prepared·=·3L)674 ····docType·=·character(0)),·prepared·=·3L)
  
675 rename_model·(list)·=·structure(list(structure(list(structure("rename_model·(deprecated)",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·675 rename_model·(list)·=·structure(list(structure(list(structure("rename_model·(deprecated)",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
676 ····structure(list(structure("rename_model",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·676 ····structure(list(structure("rename_model",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
677 ····structure(list(structure("rename_model",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·677 ····structure(list(structure("rename_model",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
678 ····structure(list(structure("internal",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·678 ····structure(list(structure("internal",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
679 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("This·function·is·deprecated·and·will·be·removed·in·a·future·release.·Please·\n",·Rd_tag·=·"TEXT"),·679 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("This·function·is·deprecated·and·will·be·removed·in·a·future·release.·Please·\n",·Rd_tag·=·"TEXT"),·
Offset 683, 15 lines modifiedOffset 683, 15 lines modified
683 ········structure("·function·instead.\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·683 ········structure("·function·instead.\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·
684 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("rename_model(sso,·new_model_name)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·684 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("rename_model(sso,·new_model_name)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·
685 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(685 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(
686 ········list(structure("sso,·new_model_name",·Rd_tag·=·"TEXT")),·686 ········list(structure("sso,·new_model_name",·Rd_tag·=·"TEXT")),·
687 ········list(structure("Use·the·",·Rd_tag·=·"TEXT"),·structure(list(687 ········list(structure("Use·the·",·Rd_tag·=·"TEXT"),·structure(list(
688 ············structure(list(structure("model_name",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link")),·Rd_tag·=·"\\code"),·688 ············structure(list(structure("model_name",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link")),·Rd_tag·=·"\\code"),·
689 ············structure("·function·instead.",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·689 ············structure("·function·instead.",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
690 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments")),·Rdfile·=·"/build/1st/r-cran-shinystan-2.5.0/man/rename_model.Rd",·class·=·"Rd",·meta·=·list(690 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments")),·Rdfile·=·"/build/2/r-cran-shinystan-2.5.0/2nd/man/rename_model.Rd",·class·=·"Rd",·meta·=·list(
691 ····docType·=·character(0)),·prepared·=·3L)691 ····docType·=·character(0)),·prepared·=·3L)
  
692 retrieve·(list)·=·structure(list(structure(list(structure("Get·summary·statistics·from·shinystan·object",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·692 retrieve·(list)·=·structure(list(structure(list(structure("Get·summary·statistics·from·shinystan·object",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
693 ····structure(list(structure("retrieve",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·693 ····structure(list(structure("retrieve",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
694 ····structure(list(structure("retrieve",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·694 ····structure(list(structure("retrieve",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
695 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("From·a·shinystan·object·get·rhat,·effective·sample·size,·posterior\n",·Rd_tag·=·"TEXT"),·695 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("From·a·shinystan·object·get·rhat,·effective·sample·size,·posterior\n",·Rd_tag·=·"TEXT"),·
696 ········structure("quantiles,·means,·standard·deviations,·sampler·diagnostics,·etc.\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·696 ········structure("quantiles,·means,·standard·deviations,·sampler·diagnostics,·etc.\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·
Offset 818, 15 lines modifiedOffset 818, 15 lines modified
818 ········structure("sso·<-·eight_schools\n",·Rd_tag·=·"RCODE"),·818 ········structure("sso·<-·eight_schools\n",·Rd_tag·=·"RCODE"),·
819 ········structure("retrieve(sso,·\"rhat\")\n",·Rd_tag·=·"RCODE"),·819 ········structure("retrieve(sso,·\"rhat\")\n",·Rd_tag·=·"RCODE"),·
820 ········structure("retrieve(sso,·\"mean\",·pars·=·c('theta[1]',·'mu'))\n",·Rd_tag·=·"RCODE"),·820 ········structure("retrieve(sso,·\"mean\",·pars·=·c('theta[1]',·'mu'))\n",·Rd_tag·=·"RCODE"),·
821 ········structure("retrieve(sso,·\"quantiles\")\n",·Rd_tag·=·"RCODE"),·821 ········structure("retrieve(sso,·\"quantiles\")\n",·Rd_tag·=·"RCODE"),·
822 ········structure("retrieve(sso,·\"max_treedepth\")··#·equivalent·to·retrieve(sso,·\"depth\"),·retrieve(sso,·\"tree\"),·etc.\n",·Rd_tag·=·"RCODE"),·822 ········structure("retrieve(sso,·\"max_treedepth\")··#·equivalent·to·retrieve(sso,·\"depth\"),·retrieve(sso,·\"tree\"),·etc.\n",·Rd_tag·=·"RCODE"),·
823 ········structure("retrieve(sso,·\"prop_divergent\")\n",·Rd_tag·=·"RCODE"),·823 ········structure("retrieve(sso,·\"prop_divergent\")\n",·Rd_tag·=·"RCODE"),·
824 ········structure("retrieve(sso,·\"prop_divergent\",·inc_warmup·=·TRUE)\n",·Rd_tag·=·"RCODE"),·824 ········structure("retrieve(sso,·\"prop_divergent\",·inc_warmup·=·TRUE)\n",·Rd_tag·=·"RCODE"),·
825 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-shinystan-2.5.0/man/retrieve.Rd",·class·=·"Rd",·meta·=·list(825 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-shinystan-2.5.0/2nd/man/retrieve.Rd",·class·=·"Rd",·meta·=·list(
826 ····docType·=·character(0)),·prepared·=·3L)826 ····docType·=·character(0)),·prepared·=·3L)
  
827 safeDeparse·(closure)·=·function·(obj)·827 safeDeparse·(closure)·=·function·(obj)·
828 {828 {
829 ····tryCatch({829 ····tryCatch({
830 ········deparse(obj)830 ········deparse(obj)
831 ····},·error·=·function(e)·{831 ····},·error·=·function(e)·{
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1.77 KB
./usr/lib/R/site-library/shinystan/help/shinystan.rdx
1.66 KB
shinystan.rdx-content
1.62 KB
Rscript --vanilla -e 'args <- commandArgs(TRUE); readRDS(args[1])' {}
    
Offset 1, 79 lines modifiedOffset 1, 79 lines modified
1 $variables1 $variables
2 $variables$as.shinystan2 $variables$as.shinystan
3 [1]··286·89713 [1]··287·8973
  
4 $variables$deploy_shinystan4 $variables$deploy_shinystan
5 [1]·9548·32115 [1]·9554·3212
  
6 $variables$drop_parameters6 $variables$drop_parameters
7 [1]·13051··19747 [1]·13060··1976
  
8 $variables$generate_quantity8 $variables$generate_quantity
9 [1]·15321··16529 [1]·15335··1654
  
10 $variables$launch_shinystan10 $variables$launch_shinystan
11 [1]·17268··362711 [1]·17286··3628
  
12 $variables$launch_shinystan_demo12 $variables$launch_shinystan_demo
13 [1]·21191··213813 [1]·21211··2140
  
14 $variables$rename_model14 $variables$rename_model
15 [1]·23621···82615 [1]·23644···827
  
16 $variables$retrieve16 $variables$retrieve
17 [1]·24737··395917 [1]·24762··3961
  
18 $variables$`shinystan-class`18 $variables$`shinystan-class`
19 [1]·28986··322519 [1]·29016··3227
  
20 $variables$`shinystan-metadata`20 $variables$`shinystan-metadata`
21 [1]·32501··497321 [1]·32534··4976
  
22 $variables$`shinystan-package`22 $variables$`shinystan-package`
23 [1]·37769··449123 [1]·37807··4493
  
24 $variables$update_sso24 $variables$update_sso
25 [1]·42551··175925 [1]·42592··1760
  
  
26 $references26 $references
27 $references$`env::1`27 $references$`env::1`
28 [1]···0·28628 [1]···0·287
  
29 $references$`env::10`29 $references$`env::10`
30 [1]·32211···29030 [1]·32243···291
  
31 $references$`env::11`31 $references$`env::11`
32 [1]·37474···29532 [1]·37510···297
  
33 $references$`env::12`33 $references$`env::12`
34 [1]·42260···29134 [1]·42300···292
  
35 $references$`env::2`35 $references$`env::2`
36 [1]·9257··29136 [1]·9260··294
  
37 $references$`env::3`37 $references$`env::3`
38 [1]·12759···29238 [1]·12766···294
  
39 $references$`env::4`39 $references$`env::4`
40 [1]·15025···29640 [1]·15036···299
  
41 $references$`env::5`41 $references$`env::5`
42 [1]·16973···29542 [1]·16989···297
  
43 $references$`env::6`43 $references$`env::6`
44 [1]·20895···29644 [1]·20914···297
  
45 $references$`env::7`45 $references$`env::7`
46 [1]·23329···29246 [1]·23351···293
  
47 $references$`env::8`47 $references$`env::8`
48 [1]·24447···29048 [1]·24471···291
  
49 $references$`env::9`49 $references$`env::9`
50 [1]·28696···29050 [1]·28723···293
  
  
51 $compressed51 $compressed
52 [1]·TRUE52 [1]·TRUE