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/srv/reproducible-results/rbuild-debian/tmp.scjGK8LOhj/b2/r-cran-ggseqlogo_0.1-2_armhf.changes
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1 ·1f41b47c9dba7af1e55011aa9a9d29e6·741952·gnu-r·optional·r-cran-ggseqlogo_0.1-2_all.deb1 ·60271f805ca65a5f94a518b525ba1e9c·742036·gnu-r·optional·r-cran-ggseqlogo_0.1-2_all.deb
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r-cran-ggseqlogo_0.1-2_all.deb
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1 -rw-r--r--···0········0········0········4·2020-10-12·07:17:32.000000·debian-binary1 -rw-r--r--···0········0········0········4·2020-10-12·07:17:32.000000·debian-binary
2 -rw-r--r--···0········0········0·····1876·2020-10-12·07:17:32.000000·control.tar.xz2 -rw-r--r--···0········0········0·····1876·2020-10-12·07:17:32.000000·control.tar.xz
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control.tar.xz
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control.tar
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14 -rw-r--r--···0·root·········(0)·root·········(0)······236·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/Meta/links.rds14 -rw-r--r--···0·root·········(0)·root·········(0)······236·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/Meta/links.rds
15 -rw-r--r--···0·root·········(0)·root·········(0)······279·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/Meta/nsInfo.rds15 -rw-r--r--···0·root·········(0)·root·········(0)······279·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/Meta/nsInfo.rds
16 -rw-r--r--···0·root·········(0)·root·········(0)······946·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/Meta/package.rds16 -rw-r--r--···0·root·········(0)·root·········(0)······946·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/Meta/package.rds
17 -rw-r--r--···0·root·········(0)·root·········(0)······211·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/Meta/vignette.rds17 -rw-r--r--···0·root·········(0)·root·········(0)······211·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/Meta/vignette.rds
18 -rw-r--r--···0·root·········(0)·root·········(0)······215·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/NAMESPACE18 -rw-r--r--···0·root·········(0)·root·········(0)······215·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/NAMESPACE
19 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/R/19 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/R/
20 -rw-r--r--···0·root·········(0)·root·········(0)·····1058·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/R/ggseqlogo20 -rw-r--r--···0·root·········(0)·root·········(0)·····1058·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/R/ggseqlogo
21 -rw-r--r--···0·root·········(0)·root·········(0)····35183·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/R/ggseqlogo.rdb21 -rw-r--r--···0·root·········(0)·root·········(0)····35185·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/R/ggseqlogo.rdb
22 -rw-r--r--···0·root·········(0)·root·········(0)······578·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/R/ggseqlogo.rdx22 -rw-r--r--···0·root·········(0)·root·········(0)······579·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/R/ggseqlogo.rdx
23 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/data/23 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/data/
24 -rw-r--r--···0·root·········(0)·root·········(0)·····9459·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/data/ggseqlogo_sample.rda24 -rw-r--r--···0·root·········(0)·root·········(0)·····9459·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/data/ggseqlogo_sample.rda
25 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/doc/25 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/doc/
26 -rw-r--r--···0·root·········(0)·root·········(0)······571·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/doc/ggseqlogo_introduction.Rmd26 -rw-r--r--···0·root·········(0)·root·········(0)······571·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/doc/ggseqlogo_introduction.Rmd
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28 -rw-r--r--···0·root·········(0)·root·········(0)·····1346·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/doc/index.html28 -rw-r--r--···0·root·········(0)·root·········(0)·····1346·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/doc/index.html
29 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/extdata/29 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/extdata/
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39 -rw-r--r--···0·root·········(0)·root·········(0)····41831·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/extdata/roboto_slab_bold.font39 -rw-r--r--···0·root·········(0)·root·········(0)····41831·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/extdata/roboto_slab_bold.font
40 -rw-r--r--···0·root·········(0)·root·········(0)····43306·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/extdata/roboto_slab_light.font40 -rw-r--r--···0·root·········(0)·root·········(0)····43306·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/extdata/roboto_slab_light.font
41 -rw-r--r--···0·root·········(0)·root·········(0)····41831·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/extdata/roboto_slab_regular.font41 -rw-r--r--···0·root·········(0)·root·········(0)····41831·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/extdata/roboto_slab_regular.font
42 -rw-r--r--···0·root·········(0)·root·········(0)····77955·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/extdata/xkcd_regular.font42 -rw-r--r--···0·root·········(0)·root·········(0)····77955·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/extdata/xkcd_regular.font
43 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/help/43 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/help/
44 -rw-r--r--···0·root·········(0)·root·········(0)······202·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/help/AnIndex44 -rw-r--r--···0·root·········(0)·root·········(0)······202·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/help/AnIndex
45 -rw-r--r--···0·root·········(0)·root·········(0)······164·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/help/aliases.rds45 -rw-r--r--···0·root·········(0)·root·········(0)······164·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/help/aliases.rds
46 -rw-r--r--···0·root·········(0)·root·········(0)····11656·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/help/ggseqlogo.rdb46 -rw-r--r--···0·root·········(0)·root·········(0)····11702·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/help/ggseqlogo.rdb
47 -rw-r--r--···0·root·········(0)·root·········(0)······369·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/help/ggseqlogo.rdx47 -rw-r--r--···0·root·········(0)·root·········(0)······366·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/help/ggseqlogo.rdx
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49 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/html/49 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/lib/R/site-library/ggseqlogo/html/
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52 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/share/52 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/share/
53 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/share/doc/53 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/share/doc/
54 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/share/doc/r-cran-ggseqlogo/54 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:17:32.000000·./usr/share/doc/r-cran-ggseqlogo/
55 -rw-r--r--···0·root·········(0)·root·········(0)······325·2020-10-12·07:17:32.000000·./usr/share/doc/r-cran-ggseqlogo/changelog.Debian.gz55 -rw-r--r--···0·root·········(0)·root·········(0)······325·2020-10-12·07:17:32.000000·./usr/share/doc/r-cran-ggseqlogo/changelog.Debian.gz
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Rscript --vanilla - {}
    
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223 ····"imports"·=·"geom_density_2d_filled·=·"geom_density_2d_filled",·geom_path·=·"geom_path",·"223 ····"imports"·=·"geom_density_2d_filled·=·"geom_density_2d_filled",·geom_path·=·"geom_path",·"
224 ····"imports"·=·"scale_fill_identity·=·"scale_fill_identity",·scale_alpha_identity·=·"scale_alpha_identity",·"224 ····"imports"·=·"scale_fill_identity·=·"scale_fill_identity",·scale_alpha_identity·=·"scale_alpha_identity",·"
225 ····"imports"·=·"aes·=·"aes",·render_axes·=·"render_axes",·GeomPointrange·=·"GeomPointrange",·"225 ····"imports"·=·"aes·=·"aes",·render_axes·=·"render_axes",·GeomPointrange·=·"GeomPointrange",·"
226 ····"imports"·=·"sym·=·"sym",·draw_key_pointrange·=·"draw_key_pointrange",·position_jitterdodge·=·"position_jitterdodge",·"226 ····"imports"·=·"sym·=·"sym",·draw_key_pointrange·=·"draw_key_pointrange",·position_jitterdodge·=·"position_jitterdodge",·"
227 ····"imports"·=·"scale_y_datetime·=·"scale_y_datetime",·stat_bin·=·"stat_bin",·"227 ····"imports"·=·"scale_y_datetime·=·"scale_y_datetime",·stat_bin·=·"stat_bin",·"
228 ····"imports"·=·"scale_fill_continuous·=·"scale_fill_continuous"),·grDevices·=·c(col2rgb·=·"col2rgb"))"228 ····"imports"·=·"scale_fill_continuous·=·"scale_fill_continuous"),·grDevices·=·c(col2rgb·=·"col2rgb"))"
229 ····"lazydata"·=·"<environment>"229 ····"lazydata"·=·"<environment>"
230 ····"path"·=·""/build/1st/r-cran-ggseqlogo-0.1/debian/r-cran-ggseqlogo/usr/lib/R/site-library/ggseqlogo""230 ····"path"·=·""/build/2/r-cran-ggseqlogo-0.1/2nd/debian/r-cran-ggseqlogo/usr/lib/R/site-library/ggseqlogo""
231 ····"spec"·=·"c(name·=·"ggseqlogo",·version·=·"0.1")"231 ····"spec"·=·"c(name·=·"ggseqlogo",·version·=·"0.1")"
232 }232 }
  
233 .__S3MethodsTable__.·(environment)·=·233 .__S3MethodsTable__.·(environment)·=·
234 {234 {
235 }235 }
  
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./usr/lib/R/site-library/ggseqlogo/R/ggseqlogo.rdx
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ggseqlogo.rdx-content
    
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000001f0:·414d·4553·5041·4345·0004·0009·0000·000e··AMESPACE........000001f0:·414d·4553·5041·4345·0004·0009·0000·000e··AMESPACE........
00000200:·2e52·4e41·5f4e·414d·4553·5041·4345·0004··.RNA_NAMESPACE..00000200:·2e52·4e41·5f4e·414d·4553·5041·4345·0004··.RNA_NAMESPACE..
00000210:·0009·0000·000f·2e5f·5f4e·414d·4553·5041··.......__NAMESPA00000210:·0009·0000·000f·2e5f·5f4e·414d·4553·5041··.......__NAMESPA
Offset 55, 17 lines modifiedOffset 55, 17 lines modified
00000360:·6500·0400·0900·0000·116d·6174·7269·785f··e........matrix_00000360:·6500·0400·0900·0000·116d·6174·7269·785f··e........matrix_
00000370:·746f·5f68·6569·6768·7473·0004·0009·0000··to_heights......00000370:·746f·5f68·6569·6768·7473·0004·0009·0000··to_heights......
00000380:·0008·6e65·7752·616e·6765·0004·0009·0000··..newRange......00000380:·0008·6e65·7752·616e·6765·0004·0009·0000··..newRange......
00000390:·0012·7072·6f62·6162·696c·6974·795f·6d65··..probability_me00000390:·0012·7072·6f62·6162·696c·6974·795f·6d65··..probability_me
000003a0:·7468·6f64·0004·0009·0000·000a·7468·656d··thod........them000003a0:·7468·6f64·0004·0009·0000·000a·7468·656d··thod........them
000003b0:·655f·6c6f·676f·0000·00fe·0000·0213·0000··e_logo..........000003b0:·655f·6c6f·676f·0000·00fe·0000·0213·0000··e_logo..........
000003c0:·0004·0000·000d·0000·0002·0000·03e3·0000··................000003c0:·0004·0000·000d·0000·0002·0000·03e3·0000··................
000003d0:·0e49·0000·000d·0000·0002·0000·02b0·0000··.I..............000003d0:·0e4b·0000·000d·0000·0002·0000·02b0·0000··.K..............
000003e0:·008a·0000·000d·0000·0002·0000·033a·0000··.............:..000003e0:·008a·0000·000d·0000·0002·0000·033a·0000··.............:..
000003f0:·00a9·0000·000d·0000·0002·0000·1267·0000··.............g..000003f0:·00a9·0000·000d·0000·0002·0000·1269·0000··.............i..
00000400:·008a·0000·0402·0000·01ff·0000·0010·0000··................00000400:·008a·0000·0402·0000·01ff·0000·0010·0000··................
00000410:·0004·0004·0009·0000·0006·656e·763a·3a31··..........env::100000410:·0004·0004·0009·0000·0006·656e·763a·3a31··..........env::1
00000420:·0004·0009·0000·0006·656e·763a·3a32·0004··........env::2..00000420:·0004·0009·0000·0006·656e·763a·3a32·0004··........env::2..
00000430:·0009·0000·0006·656e·763a·3a33·0004·0009··......env::3....00000430:·0009·0000·0006·656e·763a·3a33·0004·0009··......env::3....
00000440:·0000·0006·656e·763a·3a34·0000·00fe·0000··....env::4......00000440:·0000·0006·656e·763a·3a34·0000·00fe·0000··....env::4......
00000450:·000a·0000·0001·0000·0001·0000·0402·0000··................00000450:·000a·0000·0001·0000·0001·0000·0402·0000··................
00000460:·01ff·0000·0010·0000·0003·0004·0009·0000··................00000460:·01ff·0000·0010·0000·0003·0004·0009·0000··................
11.3 KB
./usr/lib/R/site-library/ggseqlogo/help/ggseqlogo.rdb
11.2 KB
Rscript --vanilla - {}
    
Offset 56, 15 lines modifiedOffset 56, 15 lines modified
56 ········structure(list(list(structure("...",·Rd_tag·=·"TEXT")),·56 ········structure(list(list(structure("...",·Rd_tag·=·"TEXT")),·
57 ············list(structure("Additional·arguments·passed·to·layer·params",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·57 ············list(structure("Additional·arguments·passed·to·layer·params",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
58 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments"),·58 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments"),·
59 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Load·sample·data\n",·Rd_tag·=·"RCODE"),·59 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Load·sample·data\n",·Rd_tag·=·"RCODE"),·
60 ········structure("data(ggseqlogo_sample)\n",·Rd_tag·=·"RCODE"),·60 ········structure("data(ggseqlogo_sample)\n",·Rd_tag·=·"RCODE"),·
61 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Produce·single·sequence·logo·using·geom_logo\n",·Rd_tag·=·"RCODE"),·61 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Produce·single·sequence·logo·using·geom_logo\n",·Rd_tag·=·"RCODE"),·
62 ········structure("p1·=·ggseqlogo(·seqs_dna[[1]]·)·\n",·Rd_tag·=·"RCODE"),·62 ········structure("p1·=·ggseqlogo(·seqs_dna[[1]]·)·\n",·Rd_tag·=·"RCODE"),·
63 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-ggseqlogo-0.1/man/geom_logo.Rd",·class·=·"Rd",·meta·=·list(63 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-ggseqlogo-0.1/2nd/man/geom_logo.Rd",·class·=·"Rd",·meta·=·list(
64 ····docType·=·character(0)),·prepared·=·3L)64 ····docType·=·character(0)),·prepared·=·3L)
  
65 ggseqlogo·(list)·=·structure(list(structure(list(structure("Quick·sequence·logo·plot",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·65 ggseqlogo·(list)·=·structure(list(structure(list(structure("Quick·sequence·logo·plot",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
66 ····structure(list(structure("ggseqlogo",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·66 ····structure(list(structure("ggseqlogo",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
67 ····structure(list(structure("ggseqlogo",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·67 ····structure(list(structure("ggseqlogo",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
68 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(68 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(
69 ········structure("ggseqlogo",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·69 ········structure("ggseqlogo",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·
Offset 104, 37 lines modifiedOffset 104, 37 lines modified
104 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Load·sample·data\n",·Rd_tag·=·"RCODE"),·104 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Load·sample·data\n",·Rd_tag·=·"RCODE"),·
105 ········structure("data(ggseqlogo_sample)\n",·Rd_tag·=·"RCODE"),·105 ········structure("data(ggseqlogo_sample)\n",·Rd_tag·=·"RCODE"),·
106 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Plot·a·single·DNA·sequence·logo\n",·Rd_tag·=·"RCODE"),·106 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Plot·a·single·DNA·sequence·logo\n",·Rd_tag·=·"RCODE"),·
107 ········structure("p1·=·ggseqlogo(·seqs_dna[[1]]·)\n",·Rd_tag·=·"RCODE"),·107 ········structure("p1·=·ggseqlogo(·seqs_dna[[1]]·)\n",·Rd_tag·=·"RCODE"),·
108 ········structure("print(p1)\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE"),·108 ········structure("print(p1)\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE"),·
109 ········structure("#·Plot·multiple·sequence·logos·at·once\n",·Rd_tag·=·"RCODE"),·109 ········structure("#·Plot·multiple·sequence·logos·at·once\n",·Rd_tag·=·"RCODE"),·
110 ········structure("p2·=·ggseqlogo(·seqs_dna·)\n",·Rd_tag·=·"RCODE"),·110 ········structure("p2·=·ggseqlogo(·seqs_dna·)\n",·Rd_tag·=·"RCODE"),·
111 ········structure("print(p2)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-ggseqlogo-0.1/man/ggseqlogo.Rd",·class·=·"Rd",·meta·=·list(111 ········structure("print(p2)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-ggseqlogo-0.1/2nd/man/ggseqlogo.Rd",·class·=·"Rd",·meta·=·list(
112 ····docType·=·character(0)),·prepared·=·3L)112 ····docType·=·character(0)),·prepared·=·3L)
  
113 hideOutput·(NULL)·=·NULL113 hideOutput·(NULL)·=·NULL
  
114 list_col_schemes·(list)·=·structure(list(structure(list(structure("List·color·schemes·available·in·ggseqlogo",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·114 list_col_schemes·(list)·=·structure(list(structure(list(structure("List·color·schemes·available·in·ggseqlogo",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
115 ····structure(list(structure("list_col_schemes",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·115 ····structure(list(structure("list_col_schemes",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
116 ····structure(list(structure("list_col_schemes",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·116 ····structure(list(structure("list_col_schemes",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
117 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("List·color·schemes·available·in·ggseqlogo\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·117 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("List·color·schemes·available·in·ggseqlogo\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·
118 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("list_col_schemes(v·=·T)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·118 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("list_col_schemes(v·=·T)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·
119 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(119 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(
120 ········list(structure("v",·Rd_tag·=·"TEXT")),·list(structure("If·true,·font·names·are·printed·to·stderr.·Otherwise,·color·scheme·names·are·returned·as·a·character·vector",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·120 ········list(structure("v",·Rd_tag·=·"TEXT")),·list(structure("If·true,·font·names·are·printed·to·stderr.·Otherwise,·color·scheme·names·are·returned·as·a·character·vector",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
121 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments")),·Rdfile·=·"/build/1st/r-cran-ggseqlogo-0.1/man/list_col_schemes.Rd",·class·=·"Rd",·meta·=·list(121 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments")),·Rdfile·=·"/build/2/r-cran-ggseqlogo-0.1/2nd/man/list_col_schemes.Rd",·class·=·"Rd",·meta·=·list(
122 ····docType·=·character(0)),·prepared·=·3L)122 ····docType·=·character(0)),·prepared·=·3L)
  
123 list_fonts·(list)·=·structure(list(structure(list(structure("List·fonts·available·in·ggseqlogo",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·123 list_fonts·(list)·=·structure(list(structure(list(structure("List·fonts·available·in·ggseqlogo",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
124 ····structure(list(structure("list_fonts",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·124 ····structure(list(structure("list_fonts",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
125 ····structure(list(structure("list_fonts",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·125 ····structure(list(structure("list_fonts",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
126 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("List·fonts·available·in·ggseqlogo\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·126 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("List·fonts·available·in·ggseqlogo\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·
127 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("list_fonts(v·=·T)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·127 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("list_fonts(v·=·T)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·
128 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(128 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(
129 ········list(structure("v",·Rd_tag·=·"TEXT")),·list(structure("If·true,·font·names·are·printed·to·stderr.·Otherwise,·font·names·are·returned·as·a·character·vector",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·129 ········list(structure("v",·Rd_tag·=·"TEXT")),·list(structure("If·true,·font·names·are·printed·to·stderr.·Otherwise,·font·names·are·returned·as·a·character·vector",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
130 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments")),·Rdfile·=·"/build/1st/r-cran-ggseqlogo-0.1/man/list_fonts.Rd",·class·=·"Rd",·meta·=·list(130 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments")),·Rdfile·=·"/build/2/r-cran-ggseqlogo-0.1/2nd/man/list_fonts.Rd",·class·=·"Rd",·meta·=·list(
131 ····docType·=·character(0)),·prepared·=·3L)131 ····docType·=·character(0)),·prepared·=·3L)
  
132 make_col_scheme·(list)·=·structure(list(structure(list(structure("Create·new·sequence·logo·color·scheme",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·132 make_col_scheme·(list)·=·structure(list(structure(list(structure("Create·new·sequence·logo·color·scheme",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
133 ····structure(list(structure("make_col_scheme",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·133 ····structure(list(structure("make_col_scheme",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
134 ····structure(list(structure("make_col_scheme",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·134 ····structure(list(structure("make_col_scheme",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
135 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("Create·new·sequence·logo·color·scheme\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·135 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("Create·new·sequence·logo·color·scheme\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·
136 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("make_col_scheme(chars·=·NULL,·groups·=·NULL,·cols·=·NULL,·values·=·NULL,\n",·Rd_tag·=·"RCODE"),·136 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("make_col_scheme(chars·=·NULL,·groups·=·NULL,·cols·=·NULL,·values·=·NULL,\n",·Rd_tag·=·"RCODE"),·
Offset 157, 22 lines modifiedOffset 157, 22 lines modified
157 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE"),·157 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE"),·
158 ········structure("#·Discrete·color·scheme·examples\n",·Rd_tag·=·"RCODE"),·158 ········structure("#·Discrete·color·scheme·examples\n",·Rd_tag·=·"RCODE"),·
159 ········structure("cs1·=·make_col_scheme(chars=c('A',·'T',·'G',·'C'),·groups=c('g1',·'g1',·'g2',·'g2'),·\n",·Rd_tag·=·"RCODE"),·159 ········structure("cs1·=·make_col_scheme(chars=c('A',·'T',·'G',·'C'),·groups=c('g1',·'g1',·'g2',·'g2'),·\n",·Rd_tag·=·"RCODE"),·
160 ········structure("······················cols=c('red',·'red',·'blue',·'blue'),·name='custom1')\n",·Rd_tag·=·"RCODE"),·160 ········structure("······················cols=c('red',·'red',·'blue',·'blue'),·name='custom1')\n",·Rd_tag·=·"RCODE"),·
161 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("cs2·=·make_col_scheme(chars=c('A',·'T',·'G',·'C'),·cols=c('red',·'red',·'blue',·'blue'),·\n",·Rd_tag·=·"RCODE"),·161 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("cs2·=·make_col_scheme(chars=c('A',·'T',·'G',·'C'),·cols=c('red',·'red',·'blue',·'blue'),·\n",·Rd_tag·=·"RCODE"),·
162 ········structure("······················name='custom2')\n",·Rd_tag·=·"RCODE"),·162 ········structure("······················name='custom2')\n",·Rd_tag·=·"RCODE"),·
163 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Quantitative·color·scheme\n",·Rd_tag·=·"RCODE"),·163 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Quantitative·color·scheme\n",·Rd_tag·=·"RCODE"),·
164 ········structure("cs3·=·make_col_scheme(chars=c('A',·'T',·'G',·'C'),·values=1:4,·name='custom3')\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-ggseqlogo-0.1/man/make_col_scheme.Rd",·class·=·"Rd",·meta·=·list(164 ········structure("cs3·=·make_col_scheme(chars=c('A',·'T',·'G',·'C'),·values=1:4,·name='custom3')\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-ggseqlogo-0.1/2nd/man/make_col_scheme.Rd",·class·=·"Rd",·meta·=·list(
165 ····docType·=·character(0)),·prepared·=·3L)165 ····docType·=·character(0)),·prepared·=·3L)
  
166 pfms_dna·(list)·=·structure(list(structure(list(structure("List·of·position·frequency·matrices·for·transcription·factors",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·166 pfms_dna·(list)·=·structure(list(structure(list(structure("List·of·position·frequency·matrices·for·transcription·factors",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
167 ····structure(list(structure("pfms_dna",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·167 ····structure(list(structure("pfms_dna",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
168 ····structure(list(structure("pfms_dna",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·168 ····structure(list(structure("pfms_dna",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
169 ····structure(list(structure("data",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·169 ····structure(list(structure("data",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
170 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("List·of·position·frequency·matrices·for·transcription·factors\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description")),·Rdfile·=·"/build/1st/r-cran-ggseqlogo-0.1/man/pfms_dna.Rd",·class·=·"Rd",·meta·=·list(170 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("List·of·position·frequency·matrices·for·transcription·factors\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description")),·Rdfile·=·"/build/2/r-cran-ggseqlogo-0.1/2nd/man/pfms_dna.Rd",·class·=·"Rd",·meta·=·list(
171 ····docType·=·"data"),·prepared·=·3L)171 ····docType·=·"data"),·prepared·=·3L)
  
172 safeDeparse·(closure)·=·function·(obj)·172 safeDeparse·(closure)·=·function·(obj)·
173 {173 {
174 ····tryCatch({174 ····tryCatch({
175 ········deparse(obj)175 ········deparse(obj)
176 ····},·error·=·function(e)·{176 ····},·error·=·function(e)·{
Offset 180, 30 lines modifiedOffset 180, 30 lines modified
180 ····})180 ····})
181 }181 }
  
182 seqs_aa·(list)·=·structure(list(structure(list(structure("List·of·aligned·kinase-substrate·binding·sequences",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·182 seqs_aa·(list)·=·structure(list(structure(list(structure("List·of·aligned·kinase-substrate·binding·sequences",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
183 ····structure(list(structure("seqs_aa",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·183 ····structure(list(structure("seqs_aa",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
184 ····structure(list(structure("seqs_aa",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·184 ····structure(list(structure("seqs_aa",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
185 ····structure(list(structure("data",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·185 ····structure(list(structure("data",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
186 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("List·of·aligned·kinase-substrate·binding·sequences\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description")),·Rdfile·=·"/build/1st/r-cran-ggseqlogo-0.1/man/seqs_aa.Rd",·class·=·"Rd",·meta·=·list(186 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("List·of·aligned·kinase-substrate·binding·sequences\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description")),·Rdfile·=·"/build/2/r-cran-ggseqlogo-0.1/2nd/man/seqs_aa.Rd",·class·=·"Rd",·meta·=·list(
187 ····docType·=·"data"),·prepared·=·3L)187 ····docType·=·"data"),·prepared·=·3L)
  
188 seqs_dna·(list)·=·structure(list(structure(list(structure("List·of·aligned·transcription·factor·binding·sequences",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·188 seqs_dna·(list)·=·structure(list(structure(list(structure("List·of·aligned·transcription·factor·binding·sequences",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
189 ····structure(list(structure("seqs_dna",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·189 ····structure(list(structure("seqs_dna",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
190 ····structure(list(structure("seqs_dna",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·190 ····structure(list(structure("seqs_dna",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
191 ····structure(list(structure("data",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·191 ····structure(list(structure("data",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
192 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("List·of·aligned·transcription·factor·binding·sequences\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description")),·Rdfile·=·"/build/1st/r-cran-ggseqlogo-0.1/man/seqs_dna.Rd",·class·=·"Rd",·meta·=·list(192 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("List·of·aligned·transcription·factor·binding·sequences\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description")),·Rdfile·=·"/build/2/r-cran-ggseqlogo-0.1/2nd/man/seqs_dna.Rd",·class·=·"Rd",·meta·=·list(
193 ····docType·=·"data"),·prepared·=·3L)193 ····docType·=·"data"),·prepared·=·3L)
  
194 theme_logo·(list)·=·structure(list(structure(list(structure("ggseqlogo·custom·theme",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·194 theme_logo·(list)·=·structure(list(structure(list(structure("ggseqlogo·custom·theme",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
195 ····structure(list(structure("theme_logo",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·195 ····structure(list(structure("theme_logo",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
196 ····structure(list(structure("theme_logo",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·196 ····structure(list(structure("theme_logo",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
197 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("ggseqlogo·custom·theme\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·197 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("ggseqlogo·custom·theme\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·
198 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("theme_logo(base_size·=·12,·base_family·=·\"\")\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·198 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("theme_logo(base_size·=·12,·base_family·=·\"\")\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·
199 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(199 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(
200 ········list(structure("base_size",·Rd_tag·=·"TEXT")),·list(structure("font·base·size",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·200 ········list(structure("base_size",·Rd_tag·=·"TEXT")),·list(structure("font·base·size",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
201 ········structure("\n",·Rd_tag·=·"TEXT"),·structure("\n",·Rd_tag·=·"TEXT"),·201 ········structure("\n",·Rd_tag·=·"TEXT"),·structure("\n",·Rd_tag·=·"TEXT"),·
202 ········structure(list(list(structure("base_family",·Rd_tag·=·"TEXT")),·202 ········structure(list(list(structure("base_family",·Rd_tag·=·"TEXT")),·
203 ············list(structure("font·base·family",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·203 ············list(structure("font·base·family",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
204 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments")),·Rdfile·=·"/build/1st/r-cran-ggseqlogo-0.1/man/theme_logo.Rd",·class·=·"Rd",·meta·=·list(204 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments")),·Rdfile·=·"/build/2/r-cran-ggseqlogo-0.1/2nd/man/theme_logo.Rd",·class·=·"Rd",·meta·=·list(
205 ····docType·=·character(0)),·prepared·=·3L)205 ····docType·=·character(0)),·prepared·=·3L)
  
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./usr/lib/R/site-library/ggseqlogo/help/ggseqlogo.rdx
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ggseqlogo.rdx-content
    
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00000270:·3a3a·3500·0400·0900·0000·0665·6e76·3a3a··::5........env::00000270:·3a3a·3500·0400·0900·0000·0665·6e76·3a3a··::5........env::
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./usr/lib/R/site-library/ggseqlogo/help/paths.rds
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paths.rds-content
    
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00000000:·580a·0000·0003·0004·0003·0003·0500·0000··X...............00000000:·580a·0000·0003·0004·0003·0003·0500·0000··X...............
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000000f0:·2d67·6773·6571·6c6f·676f·2d30·2e31·2f6d··-ggseqlogo-0.1/m 
00000100:·616e·2f6c·6973·745f·666f·6e74·732e·5264··an/list_fonts.Rd 
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00000120:·7374·2f72·2d63·7261·6e2d·6767·7365·716c··st/r-cran-ggseql 
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