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/srv/reproducible-results/rbuild-debian/tmp.V4tnSL5qD9/b2/r-cran-ggm_2.5-2_armhf.changes
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1 ·71780d08f67524837b65eaec29740b6f·443444·gnu-r·optional·r-cran-ggm_2.5-2_all.deb1 ·48efa4b60e709f98c7eb0842bb3d51c6·443088·gnu-r·optional·r-cran-ggm_2.5-2_all.deb
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r-cran-ggm_2.5-2_all.deb
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1 -rw-r--r--···0········0········0········4·2020-05-17·13:45:25.000000·debian-binary1 -rw-r--r--···0········0········0········4·2020-05-17·13:45:25.000000·debian-binary
2 -rw-r--r--···0········0········0·····1392·2020-05-17·13:45:25.000000·control.tar.xz2 -rw-r--r--···0········0········0·····1388·2020-05-17·13:45:25.000000·control.tar.xz
3 -rw-r--r--···0········0········0···441860·2020-05-17·13:45:25.000000·data.tar.xz3 -rw-r--r--···0········0········0···441508·2020-05-17·13:45:25.000000·data.tar.xz
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control.tar.xz
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./control
    
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1 Package:·r-cran-ggm1 Package:·r-cran-ggm
2 Version:·2.5-22 Version:·2.5-2
3 Architecture:·all3 Architecture:·all
4 Maintainer:·Debian·R·Packages·Maintainers·<r-pkg-team@alioth-lists.debian.net>4 Maintainer:·Debian·R·Packages·Maintainers·<r-pkg-team@alioth-lists.debian.net>
5 Installed-Size:·4855 Installed-Size:·486
6 Depends:·r-base-core·(>=·4.0.3-1),·r-api-4.0,·r-cran-igraph,·r-bioc-graph6 Depends:·r-base-core·(>=·4.0.3-1),·r-api-4.0,·r-cran-igraph,·r-bioc-graph
7 Section:·gnu-r7 Section:·gnu-r
8 Priority:·optional8 Priority:·optional
9 Homepage:·https://cran.r-project.org/package=ggm9 Homepage:·https://cran.r-project.org/package=ggm
10 Description:·GNU·R·functions·for·graphical·Markov·models10 Description:·GNU·R·functions·for·graphical·Markov·models
11 ·Functions·and·datasets·for·maximum·likelihood·fitting·of·some·classes·of11 ·Functions·and·datasets·for·maximum·likelihood·fitting·of·some·classes·of
12 ·graphical·Markov·models.12 ·graphical·Markov·models.
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./md5sums
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./md5sums
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data.tar.xz
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data.tar
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14 -rw-r--r--···0·root·········(0)·root·········(0)·····1071·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/Meta/links.rds14 -rw-r--r--···0·root·········(0)·root·········(0)·····1071·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/Meta/links.rds
15 -rw-r--r--···0·root·········(0)·root·········(0)······810·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/Meta/nsInfo.rds15 -rw-r--r--···0·root·········(0)·root·········(0)······810·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/Meta/nsInfo.rds
16 -rw-r--r--···0·root·········(0)·root·········(0)······767·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/Meta/package.rds16 -rw-r--r--···0·root·········(0)·root·········(0)······767·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/Meta/package.rds
17 -rw-r--r--···0·root·········(0)·root·········(0)·····1187·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/NAMESPACE17 -rw-r--r--···0·root·········(0)·root·········(0)·····1187·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/NAMESPACE
18 -rw-r--r--···0·root·········(0)·root·········(0)·····1354·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/NEWS18 -rw-r--r--···0·root·········(0)·root·········(0)·····1354·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/NEWS
19 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/R/19 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/R/
20 -rw-r--r--···0·root·········(0)·root·········(0)·····1058·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/R/ggm20 -rw-r--r--···0·root·········(0)·root·········(0)·····1058·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/R/ggm
21 -rw-r--r--···0·root·········(0)·root·········(0)···210250·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/R/ggm.rdb21 -rw-r--r--···0·root·········(0)·root·········(0)···210252·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/R/ggm.rdb
22 -rw-r--r--···0·root·········(0)·root·········(0)·····1278·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/R/ggm.rdx22 -rw-r--r--···0·root·········(0)·root·········(0)·····1276·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/R/ggm.rdx
23 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/23 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/
24 -rw-r--r--···0·root·········(0)·root·········(0)······201·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/anger.rda24 -rw-r--r--···0·root·········(0)·root·········(0)······201·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/anger.rda
25 -rw-r--r--···0·root·········(0)·root·········(0)······619·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/derived.rda25 -rw-r--r--···0·root·········(0)·root·········(0)······619·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/derived.rda
26 -rw-r--r--···0·root·········(0)·root·········(0)······916·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/glucose.rda26 -rw-r--r--···0·root·········(0)·root·········(0)······916·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/glucose.rda
27 -rw-r--r--···0·root·········(0)·root·········(0)·····1073·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/marks.rda27 -rw-r--r--···0·root·········(0)·root·········(0)·····1073·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/marks.rda
28 -rw-r--r--···0·root·········(0)·root·········(0)······167·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/stress.rda28 -rw-r--r--···0·root·········(0)·root·········(0)······167·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/stress.rda
29 -rw-r--r--···0·root·········(0)·root·········(0)·····5222·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/surdata.rda29 -rw-r--r--···0·root·········(0)·root·········(0)·····5222·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/data/surdata.rda
30 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/help/30 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/help/
31 -rw-r--r--···0·root·········(0)·root·········(0)·····1520·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/help/AnIndex31 -rw-r--r--···0·root·········(0)·root·········(0)·····1520·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/help/AnIndex
32 -rw-r--r--···0·root·········(0)·root·········(0)······734·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/help/aliases.rds32 -rw-r--r--···0·root·········(0)·root·········(0)······734·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/help/aliases.rds
33 -rw-r--r--···0·root·········(0)·root·········(0)···208884·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/help/ggm.rdb33 -rw-r--r--···0·root·········(0)·root·········(0)···209143·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/help/ggm.rdb
34 -rw-r--r--···0·root·········(0)·root·········(0)·····1720·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/help/ggm.rdx34 -rw-r--r--···0·root·········(0)·root·········(0)·····1706·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/help/ggm.rdx
35 -rw-r--r--···0·root·········(0)·root·········(0)······703·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/help/paths.rds35 -rw-r--r--···0·root·········(0)·root·········(0)······702·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/help/paths.rds
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37 -rw-r--r--···0·root·········(0)·root·········(0)····10729·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/html/00Index.html37 -rw-r--r--···0·root·········(0)·root·········(0)····10729·2020-05-17·13:45:25.000000·./usr/lib/R/site-library/ggm/html/00Index.html
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39 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-05-17·13:45:25.000000·./usr/share/39 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-05-17·13:45:25.000000·./usr/share/
40 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-05-17·13:45:25.000000·./usr/share/doc/40 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-05-17·13:45:25.000000·./usr/share/doc/
41 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-05-17·13:45:25.000000·./usr/share/doc/r-cran-ggm/41 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-05-17·13:45:25.000000·./usr/share/doc/r-cran-ggm/
42 -rw-r--r--···0·root·········(0)·root·········(0)······357·2020-05-17·13:45:25.000000·./usr/share/doc/r-cran-ggm/changelog.Debian.gz42 -rw-r--r--···0·root·········(0)·root·········(0)······357·2020-05-17·13:45:25.000000·./usr/share/doc/r-cran-ggm/changelog.Debian.gz
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Rscript --vanilla - {}
    
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348 ····"imports"·=·"par·=·"par",·plot·=·"plot",·points·=·"points",·segments·=·"segments",·"348 ····"imports"·=·"par·=·"par",·plot·=·"plot",·points·=·"points",·segments·=·"segments",·"
349 ····"imports"·=·"text·=·"text"),·stats·=·c(binomial·=·"binomial",·coef·=·"coef",·"349 ····"imports"·=·"text·=·"text"),·stats·=·c(binomial·=·"binomial",·coef·=·"coef",·"
350 ····"imports"·=·"cor·=·"cor",·formula·=·"formula",·glm·=·"glm",·lm·=·"lm",·model.frame·=·"model.frame",·"350 ····"imports"·=·"cor·=·"cor",·formula·=·"formula",·glm·=·"glm",·lm·=·"lm",·model.frame·=·"model.frame",·"
351 ····"imports"·=·"model.matrix·=·"model.matrix",·model.response·=·"model.response",·"351 ····"imports"·=·"model.matrix·=·"model.matrix",·model.response·=·"model.response",·"
352 ····"imports"·=·"pchisq·=·"pchisq",·pt·=·"pt",·rnorm·=·"rnorm",·terms·=·"terms",·"352 ····"imports"·=·"pchisq·=·"pchisq",·pt·=·"pt",·rnorm·=·"rnorm",·terms·=·"terms",·"
353 ····"imports"·=·"var·=·"var"),·methods·=·c(is·=·"is"))"353 ····"imports"·=·"var·=·"var"),·methods·=·c(is·=·"is"))"
354 ····"lazydata"·=·"<environment>"354 ····"lazydata"·=·"<environment>"
355 ····"path"·=·""/build/1st/r-cran-ggm-2.5/debian/r-cran-ggm/usr/lib/R/site-library/ggm""355 ····"path"·=·""/build/2/r-cran-ggm-2.5/2nd/debian/r-cran-ggm/usr/lib/R/site-library/ggm""
356 ····"spec"·=·"c(name·=·"ggm",·version·=·"2.5")"356 ····"spec"·=·"c(name·=·"ggm",·version·=·"2.5")"
357 }357 }
  
358 .__S3MethodsTable__.·(environment)·=·358 .__S3MethodsTable__.·(environment)·=·
359 {359 {
360 }360 }
  
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Offset 165, 18 lines modifiedOffset 165, 18 lines modified
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117 KB
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Rscript --vanilla - {}
    
Offset 121, 15 lines modifiedOffset 121, 15 lines modified
121 ········structure("·············0,0,0,0,1,0,1,0,1,1,0,0,0,0,0,0,\n",·Rd_tag·=·"RCODE"),·121 ········structure("·············0,0,0,0,1,0,1,0,1,1,0,0,0,0,0,0,\n",·Rd_tag·=·"RCODE"),·
122 ········structure("·············1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,\n",·Rd_tag·=·"RCODE"),·122 ········structure("·············1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,\n",·Rd_tag·=·"RCODE"),·
123 ········structure("·············0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,\n",·Rd_tag·=·"RCODE"),·123 ········structure("·············0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,\n",·Rd_tag·=·"RCODE"),·
124 ········structure("·············0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,\n",·Rd_tag·=·"RCODE"),·124 ········structure("·············0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,\n",·Rd_tag·=·"RCODE"),·
125 ········structure("·············1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,\n",·Rd_tag·=·"RCODE"),·125 ········structure("·············1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,\n",·Rd_tag·=·"RCODE"),·
126 ········structure("·············0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0),16,16,byrow=TRUE)\n",·Rd_tag·=·"RCODE"),·126 ········structure("·············0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0),16,16,byrow=TRUE)\n",·Rd_tag·=·"RCODE"),·
127 ········structure("M·<-·c(3,5,6,15,16)\n",·Rd_tag·=·"RCODE"),·127 ········structure("M·<-·c(3,5,6,15,16)\n",·Rd_tag·=·"RCODE"),·
128 ········structure("C·<-·c(4,7)\n",·Rd_tag·=·"RCODE"),·structure("AG(ex,·M,·C,·plot·=·TRUE)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-ggm-2.5/man/AG.Rd",·class·=·"Rd",·meta·=·list(128 ········structure("C·<-·c(4,7)\n",·Rd_tag·=·"RCODE"),·structure("AG(ex,·M,·C,·plot·=·TRUE)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-ggm-2.5/2nd/man/AG.Rd",·class·=·"Rd",·meta·=·list(
129 ····docType·=·character(0)),·prepared·=·3L)129 ····docType·=·character(0)),·prepared·=·3L)
  
130 DAG·(list)·=·structure(list(structure(list(structure("Directed·acyclic·graphs·(DAGs)",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·130 DAG·(list)·=·structure(list(structure(list(structure("Directed·acyclic·graphs·(DAGs)",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
131 ····structure(list(structure("DAG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·131 ····structure(list(structure("DAG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
132 ····structure(list(structure("DAG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·132 ····structure(list(structure("DAG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
133 ····structure(list(structure("graphs",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·133 ····structure(list(structure("graphs",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
134 ····structure(list(structure("models",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·134 ····structure(list(structure("models",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
Offset 201, 15 lines modifiedOffset 201, 15 lines modified
201 ········structure("DAG(y·~·x*z·+·z*v,·x·~·z)\n",·Rd_tag·=·"RCODE"),·201 ········structure("DAG(y·~·x*z·+·z*v,·x·~·z)\n",·Rd_tag·=·"RCODE"),·
202 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("##·A·cyclic·graph·returns·an·error!\n",·Rd_tag·=·"RCODE"),·202 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("##·A·cyclic·graph·returns·an·error!\n",·Rd_tag·=·"RCODE"),·
203 ········structure(list(structure("DAG(y·~·x,·x·~·z,·z·~·y)",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\dontrun"),·203 ········structure(list(structure("DAG(y·~·x,·x·~·z,·z·~·y)",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\dontrun"),·
204 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE"),·204 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE"),·
205 ········structure("##·The·order·can·be·changed\n",·Rd_tag·=·"RCODE"),·205 ········structure("##·The·order·can·be·changed\n",·Rd_tag·=·"RCODE"),·
206 ········structure("DAG(y·~·z,·y·~·x·+·u·+·v,··u·~·v·+·z)\n",·Rd_tag·=·"RCODE"),·206 ········structure("DAG(y·~·z,·y·~·x·+·u·+·v,··u·~·v·+·z)\n",·Rd_tag·=·"RCODE"),·
207 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("##·If·you·want·to·order·the·nodes·(topological·sort·of·the·DAG)\n",·Rd_tag·=·"RCODE"),·207 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("##·If·you·want·to·order·the·nodes·(topological·sort·of·the·DAG)\n",·Rd_tag·=·"RCODE"),·
208 ········structure("DAG(y·~·z,·y·~·x·+·u·+·v,··u·~·v·+·z,·order=TRUE)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-ggm-2.5/man/DAG.Rd",·class·=·"Rd",·meta·=·list(208 ········structure("DAG(y·~·z,·y·~·x·+·u·+·v,··u·~·v·+·z,·order=TRUE)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-ggm-2.5/2nd/man/DAG.Rd",·class·=·"Rd",·meta·=·list(
209 ····docType·=·character(0)),·prepared·=·3L)209 ····docType·=·character(0)),·prepared·=·3L)
  
210 DG·(list)·=·structure(list(structure(list(structure("Directed·graphs",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·210 DG·(list)·=·structure(list(structure(list(structure("Directed·graphs",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
211 ····structure(list(structure("DG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·211 ····structure(list(structure("DG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
212 ····structure(list(structure("DG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·212 ····structure(list(structure("DG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
213 ····structure(list(structure("graphs",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·213 ····structure(list(structure("graphs",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
214 ····structure(list(structure("directed·graph",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·214 ····structure(list(structure("directed·graph",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
Offset 247, 15 lines modifiedOffset 247, 15 lines modified
247 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("##·A·DAG\n",·Rd_tag·=·"RCODE"),·247 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("##·A·DAG\n",·Rd_tag·=·"RCODE"),·
248 ········structure("DG(y·~·x,·x·~·z,·z·~·u)\n",·Rd_tag·=·"RCODE"),·248 ········structure("DG(y·~·x,·x·~·z,·z·~·u)\n",·Rd_tag·=·"RCODE"),·
249 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("##·A·cyclic·directed·graph\n",·Rd_tag·=·"RCODE"),·249 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("##·A·cyclic·directed·graph\n",·Rd_tag·=·"RCODE"),·
250 ········structure("DG(y·~·x,·x·~·z,·z·~·y)\n",·Rd_tag·=·"RCODE"),·250 ········structure("DG(y·~·x,·x·~·z,·z·~·y)\n",·Rd_tag·=·"RCODE"),·
251 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("##·A·graph·with·two·arrows·between·two·nodes\n",·Rd_tag·=·"RCODE"),·251 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("##·A·graph·with·two·arrows·between·two·nodes\n",·Rd_tag·=·"RCODE"),·
252 ········structure("DG(y·~·x,·x·~·y)\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE"),·252 ········structure("DG(y·~·x,·x·~·y)\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE"),·
253 ········structure("##·There·can·be·isolated·nodes\n",·Rd_tag·=·"RCODE"),·253 ········structure("##·There·can·be·isolated·nodes\n",·Rd_tag·=·"RCODE"),·
254 ········structure("DG(y·~·x,·x·~·x)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-ggm-2.5/man/DG.Rd",·class·=·"Rd",·meta·=·list(254 ········structure("DG(y·~·x,·x·~·x)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-ggm-2.5/2nd/man/DG.Rd",·class·=·"Rd",·meta·=·list(
255 ····docType·=·character(0)),·prepared·=·3L)255 ····docType·=·character(0)),·prepared·=·3L)
  
256 In·(list)·=·structure(list(structure(list(structure("Indicator·matrix",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·256 In·(list)·=·structure(list(structure(list(structure("Indicator·matrix",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
257 ····structure(list(structure("In",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·257 ····structure(list(structure("In",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
258 ····structure(list(structure("In",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·258 ····structure(list(structure("In",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
259 ····structure(list(structure("array",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·259 ····structure(list(structure("array",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
260 ····structure(list(structure("algebra",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·260 ····structure(list(structure("algebra",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
Offset 284, 15 lines modifiedOffset 284, 15 lines modified
284 ············structure("inducedCovGraph",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link")),·Rd_tag·=·"\\code"),·284 ············structure("inducedCovGraph",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link")),·Rd_tag·=·"\\code"),·
285 ········structure(",·",·Rd_tag·=·"TEXT"),·structure(list(structure(list(285 ········structure(",·",·Rd_tag·=·"TEXT"),·structure(list(structure(list(
286 ············structure("inducedConGraph",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link")),·Rd_tag·=·"\\code")),·Rd_tag·=·"\\seealso"),·286 ············structure("inducedConGraph",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link")),·Rd_tag·=·"\\code")),·Rd_tag·=·"\\seealso"),·
287 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("##·A·simple·way·to·find·the·overall·induced·concentration·graph\n",·Rd_tag·=·"RCODE"),·287 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("##·A·simple·way·to·find·the·overall·induced·concentration·graph\n",·Rd_tag·=·"RCODE"),·
288 ········structure("##·The·DAG·on·p.·198·of·Cox·&·Wermuth·(1996)\n",·Rd_tag·=·"RCODE"),·288 ········structure("##·The·DAG·on·p.·198·of·Cox·&·Wermuth·(1996)\n",·Rd_tag·=·"RCODE"),·
289 ········structure("amat·<-·DAG(y1·~·y2·+·y3,·y3·~·y5,·y4·~·y5)\n",·Rd_tag·=·"RCODE"),·289 ········structure("amat·<-·DAG(y1·~·y2·+·y3,·y3·~·y5,·y4·~·y5)\n",·Rd_tag·=·"RCODE"),·
290 ········structure("A·<-·edgematrix(amat)\n",·Rd_tag·=·"RCODE"),·290 ········structure("A·<-·edgematrix(amat)\n",·Rd_tag·=·"RCODE"),·
291 ········structure("In(crossprod(A))\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-ggm-2.5/man/In.Rd",·class·=·"Rd",·meta·=·list(291 ········structure("In(crossprod(A))\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-ggm-2.5/2nd/man/In.Rd",·class·=·"Rd",·meta·=·list(
292 ····docType·=·character(0)),·prepared·=·3L)292 ····docType·=·character(0)),·prepared·=·3L)
  
293 InducedGraphs·(list)·=·structure(list(structure(list(structure("Graphs·induced·by·marginalization·or·conditioning",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·293 InducedGraphs·(list)·=·structure(list(structure(list(structure("Graphs·induced·by·marginalization·or·conditioning",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
294 ····structure(list(structure("InducedGraphs",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·294 ····structure(list(structure("InducedGraphs",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
295 ····structure(list(structure("inducedCovGraph",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·295 ····structure(list(structure("inducedCovGraph",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
296 ····structure(list(structure("inducedConGraph",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·296 ····structure(list(structure("inducedConGraph",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
297 ····structure(list(structure("inducedRegGraph",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·297 ····structure(list(structure("inducedRegGraph",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
Offset 490, 15 lines modifiedOffset 490, 15 lines modified
490 ········structure("dag3·=·DAG(X~W,·W~Y,·U~Y+Z)\n",·Rd_tag·=·"RCODE"),·490 ········structure("dag3·=·DAG(X~W,·W~Y,·U~Y+Z)\n",·Rd_tag·=·"RCODE"),·
491 ········structure("cc·=·list(c(\"W\",·\"U\"),·c(\"X\",·\"Y\",·\"Z\"))\n",·Rd_tag·=·"RCODE"),·491 ········structure("cc·=·list(c(\"W\",·\"U\"),·c(\"X\",·\"Y\",·\"Z\"))\n",·Rd_tag·=·"RCODE"),·
492 ········structure("inducedChainGraph(dag3,·cc=cc,·type=\"LWF\")\n",·Rd_tag·=·"RCODE"),·492 ········structure("inducedChainGraph(dag3,·cc=cc,·type=\"LWF\")\n",·Rd_tag·=·"RCODE"),·
493 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("##·...·with·AMP·interpretation\n",·Rd_tag·=·"RCODE"),·493 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("##·...·with·AMP·interpretation\n",·Rd_tag·=·"RCODE"),·
494 ········structure("inducedChainGraph(dag3,·cc=cc,·type=\"AMP\")\n",·Rd_tag·=·"RCODE"),·494 ········structure("inducedChainGraph(dag3,·cc=cc,·type=\"AMP\")\n",·Rd_tag·=·"RCODE"),·
495 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("##·...·with·multivariate·regression·interpretation\n",·Rd_tag·=·"RCODE"),·495 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("##·...·with·multivariate·regression·interpretation\n",·Rd_tag·=·"RCODE"),·
496 ········structure("cc=·list(c(\"U\"),·c(\"Z\",·\"Y\"),·c(\"X\",·\"W\"))\n",·Rd_tag·=·"RCODE"),·496 ········structure("cc=·list(c(\"U\"),·c(\"Z\",·\"Y\"),·c(\"X\",·\"W\"))\n",·Rd_tag·=·"RCODE"),·
497 ········structure("inducedChainGraph(dag3,·cc=cc,·type=\"MRG\")\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-ggm-2.5/man/InducedGraphs.Rd",·class·=·"Rd",·meta·=·list(497 ········structure("inducedChainGraph(dag3,·cc=cc,·type=\"MRG\")\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-ggm-2.5/2nd/man/InducedGraphs.Rd",·class·=·"Rd",·meta·=·list(
498 ····docType·=·character(0)),·prepared·=·3L)498 ····docType·=·character(0)),·prepared·=·3L)
  
499 MAG·(list)·=·structure(list(structure(list(structure("\n",·Rd_tag·=·"TEXT"),·499 MAG·(list)·=·structure(list(structure(list(structure("\n",·Rd_tag·=·"TEXT"),·
500 ····structure("Maximal·ancestral·graph·\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·500 ····structure("Maximal·ancestral·graph·\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
501 ····structure(list(structure("MAG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·501 ····structure(list(structure("MAG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
502 ····structure(list(structure("MAG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·502 ····structure(list(structure("MAG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
503 ····structure(list(structure("ancestral·graph",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·503 ····structure(list(structure("ancestral·graph",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
Offset 638, 15 lines modifiedOffset 638, 15 lines modified
638 ········structure("·············0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,\n",·Rd_tag·=·"RCODE"),·638 ········structure("·············0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,\n",·Rd_tag·=·"RCODE"),·
639 ········structure("·············1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,\n",·Rd_tag·=·"RCODE"),·639 ········structure("·············1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,\n",·Rd_tag·=·"RCODE"),·
640 ········structure("·············0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0),·16,·16,·byrow·=·TRUE)\n",·Rd_tag·=·"RCODE"),·640 ········structure("·············0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0),·16,·16,·byrow·=·TRUE)\n",·Rd_tag·=·"RCODE"),·
641 ········structure("M·<-·c(3,5,6,15,16)\n",·Rd_tag·=·"RCODE"),·641 ········structure("M·<-·c(3,5,6,15,16)\n",·Rd_tag·=·"RCODE"),·
642 ········structure("C·<-·c(4,7)\n",·Rd_tag·=·"RCODE"),·structure("MAG(ex,·M,·C,·plot=TRUE)\n",·Rd_tag·=·"RCODE"),·642 ········structure("C·<-·c(4,7)\n",·Rd_tag·=·"RCODE"),·structure("MAG(ex,·M,·C,·plot=TRUE)\n",·Rd_tag·=·"RCODE"),·
643 ········structure("###################################################\n",·Rd_tag·=·"RCODE"),·643 ········structure("###################################################\n",·Rd_tag·=·"RCODE"),·
644 ········structure("H·<-·matrix(c(0,100,1,0,100,0,100,0,0,100,0,100,0,1,100,0),4,4)\n",·Rd_tag·=·"RCODE"),·644 ········structure("H·<-·matrix(c(0,100,1,0,100,0,100,0,0,100,0,100,0,1,100,0),4,4)\n",·Rd_tag·=·"RCODE"),·
645 ········structure("Max(H)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-ggm-2.5/man/MAG.Rd",·class·=·"Rd",·meta·=·list(645 ········structure("Max(H)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-ggm-2.5/2nd/man/MAG.Rd",·class·=·"Rd",·meta·=·list(
646 ····docType·=·character(0)),·prepared·=·3L)646 ····docType·=·character(0)),·prepared·=·3L)
  
647 MRG·(list)·=·structure(list(structure(list(structure("\n",·Rd_tag·=·"TEXT"),·647 MRG·(list)·=·structure(list(structure(list(structure("\n",·Rd_tag·=·"TEXT"),·
648 ····structure("Maximal·ribbonless·graph\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·648 ····structure("Maximal·ribbonless·graph\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
649 ····structure(list(structure("MRG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·649 ····structure(list(structure("MRG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
650 ····structure(list(structure("MRG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·650 ····structure(list(structure("MRG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
651 ····structure(list(structure("graphs",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·651 ····structure(list(structure("graphs",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
Offset 796, 15 lines modifiedOffset 796, 15 lines modified
796 ········structure("M·<-·c(3,5,6,15,16)\n",·Rd_tag·=·"RCODE"),·796 ········structure("M·<-·c(3,5,6,15,16)\n",·Rd_tag·=·"RCODE"),·
797 ········structure("C·<-·c(4,7)\n",·Rd_tag·=·"RCODE"),·structure("MRG(ex,·M,·C,·plot·=·TRUE)\n",·Rd_tag·=·"RCODE"),·797 ········structure("C·<-·c(4,7)\n",·Rd_tag·=·"RCODE"),·structure("MRG(ex,·M,·C,·plot·=·TRUE)\n",·Rd_tag·=·"RCODE"),·
798 ········structure("###################################################\n",·Rd_tag·=·"RCODE"),·798 ········structure("###################################################\n",·Rd_tag·=·"RCODE"),·
799 ········structure("H·<-·matrix(c(·0,·100,···1,···0,\n",·Rd_tag·=·"RCODE"),·799 ········structure("H·<-·matrix(c(·0,·100,···1,···0,\n",·Rd_tag·=·"RCODE"),·
800 ········structure("··\t·········100,···0,·100,···0,\n",·Rd_tag·=·"RCODE"),·800 ········structure("··\t·········100,···0,·100,···0,\n",·Rd_tag·=·"RCODE"),·
801 ········structure("·\t·············0,·100,···0,·100,\n",·Rd_tag·=·"RCODE"),·801 ········structure("·\t·············0,·100,···0,·100,\n",·Rd_tag·=·"RCODE"),·
802 ········structure("\t·············0,···1,·100,···0),·4,4)\n",·Rd_tag·=·"RCODE"),·802 ········structure("\t·············0,···1,·100,···0),·4,4)\n",·Rd_tag·=·"RCODE"),·
803 ········structure("Max(H)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-ggm-2.5/man/MRG.Rd",·class·=·"Rd",·meta·=·list(803 ········structure("Max(H)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-ggm-2.5/2nd/man/MRG.Rd",·class·=·"Rd",·meta·=·list(
804 ····docType·=·character(0)),·prepared·=·3L)804 ····docType·=·character(0)),·prepared·=·3L)
  
805 MSG·(list)·=·structure(list(structure(list(structure("\n",·Rd_tag·=·"TEXT"),·805 MSG·(list)·=·structure(list(structure(list(structure("\n",·Rd_tag·=·"TEXT"),·
806 ····structure("Maximal·summary·graph·\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·806 ····structure("Maximal·summary·graph·\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
807 ····structure(list(structure("MSG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·807 ····structure(list(structure("MSG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
808 ····structure(list(structure("MSG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·808 ····structure(list(structure("MSG",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
809 ····structure(list(structure("graphs",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·809 ····structure(list(structure("graphs",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
Offset 948, 15 lines modifiedOffset 948, 15 lines modified
948 ········structure("·············0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,\n",·Rd_tag·=·"RCODE"),·948 ········structure("·············0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,\n",·Rd_tag·=·"RCODE"),·
949 ········structure("·············1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,\n",·Rd_tag·=·"RCODE"),·949 ········structure("·············1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,\n",·Rd_tag·=·"RCODE"),·
950 ········structure("·············0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0),·16,·16,·byrow=TRUE)\n",·Rd_tag·=·"RCODE"),·950 ········structure("·············0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0),·16,·16,·byrow=TRUE)\n",·Rd_tag·=·"RCODE"),·
951 ········structure("M·<-·c(3,5,6,15,16)\n",·Rd_tag·=·"RCODE"),·951 ········structure("M·<-·c(3,5,6,15,16)\n",·Rd_tag·=·"RCODE"),·
952 ········structure("C·<-·c(4,7)\n",·Rd_tag·=·"RCODE"),·structure("MSG(ex,M,C,plot=TRUE)\n",·Rd_tag·=·"RCODE"),·952 ········structure("C·<-·c(4,7)\n",·Rd_tag·=·"RCODE"),·structure("MSG(ex,M,C,plot=TRUE)\n",·Rd_tag·=·"RCODE"),·
953 ········structure("###################################################\n",·Rd_tag·=·"RCODE"),·953 ········structure("###################################################\n",·Rd_tag·=·"RCODE"),·
954 ········structure("H<-matrix(c(0,100,1,0,100,0,100,0,0,100,0,100,0,1,100,0),4,4)\n",·Rd_tag·=·"RCODE"),·954 ········structure("H<-matrix(c(0,100,1,0,100,0,100,0,0,100,0,100,0,1,100,0),4,4)\n",·Rd_tag·=·"RCODE"),·
955 ········structure("Max(H)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-ggm-2.5/man/MSG.Rd",·class·=·"Rd",·meta·=·list(955 ········structure("Max(H)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-ggm-2.5/2nd/man/MSG.Rd",·class·=·"Rd",·meta·=·list(
956 ····docType·=·character(0)),·prepared·=·3L)956 ····docType·=·character(0)),·prepared·=·3L)
  
957 MarkEqMag·(list)·=·structure(list(structure(list(structure("\n",·Rd_tag·=·"TEXT"),·957 MarkEqMag·(list)·=·structure(list(structure(list(structure("\n",·Rd_tag·=·"TEXT"),·
958 ····structure("Markov·equivalence·of·maximal·ancestral·graphs·\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·958 ····structure("Markov·equivalence·of·maximal·ancestral·graphs·\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
959 ····structure(list(structure("MarkEqMag",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·959 ····structure(list(structure("MarkEqMag",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
960 ····structure(list(structure("MarkEqMag",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·960 ····structure(list(structure("MarkEqMag",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
961 ····structure(list(structure("graphs",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·961 ····structure(list(structure("graphs",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\keyword"),·
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