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1 ·7f0ab8611189c3c03a7e814c67ab79e9·245724·gnu-r·optional·r-cran-calibratr_0.1.2-2_all.deb1 ·52c7a062d81623bb184cca8bbcfb8e68·245948·gnu-r·optional·r-cran-calibratr_0.1.2-2_all.deb
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1 -rw-r--r--···0········0········0········4·2020-10-12·07:21:35.000000·debian-binary1 -rw-r--r--···0········0········0········4·2020-10-12·07:21:35.000000·debian-binary
2 -rw-r--r--···0········0········0·····1504·2020-10-12·07:21:35.000000·control.tar.xz2 -rw-r--r--···0········0········0·····1504·2020-10-12·07:21:35.000000·control.tar.xz
3 -rw-r--r--···0········0········0···244028·2020-10-12·07:21:35.000000·data.tar.xz3 -rw-r--r--···0········0········0···244252·2020-10-12·07:21:35.000000·data.tar.xz
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1 Package:·r-cran-calibratr1 Package:·r-cran-calibratr
2 Version:·0.1.2-22 Version:·0.1.2-2
3 Architecture:·all3 Architecture:·all
4 Maintainer:·Debian·R·Packages·Maintainers·<r-pkg-team@alioth-lists.debian.net>4 Maintainer:·Debian·R·Packages·Maintainers·<r-pkg-team@alioth-lists.debian.net>
5 Installed-Size:·2785 Installed-Size:·279
6 Depends:·r-base-core·(>=·4.0.3-1),·r-api-4.0,·r-cran-ggplot2,·r-cran-proc,·r-cran-reshape2,·r-cran-foreach,·r-cran-fitdistrplus,·r-cran-doparallel6 Depends:·r-base-core·(>=·4.0.3-1),·r-api-4.0,·r-cran-ggplot2,·r-cran-proc,·r-cran-reshape2,·r-cran-foreach,·r-cran-fitdistrplus,·r-cran-doparallel
7 Section:·gnu-r7 Section:·gnu-r
8 Priority:·optional8 Priority:·optional
9 Homepage:·https://cran.r-project.org/package=CalibratR9 Homepage:·https://cran.r-project.org/package=CalibratR
10 Description:·GNU·R·mapping·ML·scores·to·calibrated·predictions10 Description:·GNU·R·mapping·ML·scores·to·calibrated·predictions
11 ·Transforms·your·uncalibrated·Machine·Learning·scores·to·well-calibrated11 ·Transforms·your·uncalibrated·Machine·Learning·scores·to·well-calibrated
12 ·prediction·estimates·that·can·be·interpreted·as·probability·estimates.12 ·prediction·estimates·that·can·be·interpreted·as·probability·estimates.
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14 -rw-r--r--···0·root·········(0)·root·········(0)······865·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/Meta/hsearch.rds14 -rw-r--r--···0·root·········(0)·root·········(0)······865·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/Meta/hsearch.rds
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18 -rw-r--r--···0·root·········(0)·root·········(0)·····1563·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/NAMESPACE18 -rw-r--r--···0·root·········(0)·root·········(0)·····1563·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/NAMESPACE
19 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/R/19 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/R/
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22 -rw-r--r--···0·root·········(0)·root·········(0)······897·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/R/CalibratR.rdx22 -rw-r--r--···0·root·········(0)·root·········(0)······899·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/R/CalibratR.rdx
23 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/data/23 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/data/
24 -rw-r--r--···0·root·········(0)·root·········(0)·····5039·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/data/Rdata.rdb24 -rw-r--r--···0·root·········(0)·root·········(0)·····5039·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/data/Rdata.rdb
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26 -rw-r--r--···0·root·········(0)·root·········(0)······157·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/data/Rdata.rdx26 -rw-r--r--···0·root·········(0)·root·········(0)······157·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/data/Rdata.rdx
27 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/help/27 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/help/
28 -rw-r--r--···0·root·········(0)·root·········(0)·····1254·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/help/AnIndex28 -rw-r--r--···0·root·········(0)·root·········(0)·····1254·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/help/AnIndex
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30 -rw-r--r--···0·root·········(0)·root·········(0)·····1100·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/help/CalibratR.rdx30 -rw-r--r--···0·root·········(0)·root·········(0)·····1095·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/help/CalibratR.rdx
31 -rw-r--r--···0·root·········(0)·root·········(0)······473·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/help/aliases.rds31 -rw-r--r--···0·root·········(0)·root·········(0)······473·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/help/aliases.rds
32 -rw-r--r--···0·root·········(0)·root·········(0)······547·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/help/paths.rds32 -rw-r--r--···0·root·········(0)·root·········(0)······550·2020-10-12·07:21:35.000000·./usr/lib/R/site-library/CalibratR/help/paths.rds
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36 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:21:35.000000·./usr/share/36 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:21:35.000000·./usr/share/
37 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:21:35.000000·./usr/share/doc/37 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:21:35.000000·./usr/share/doc/
38 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:21:35.000000·./usr/share/doc/r-cran-calibratr/38 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:21:35.000000·./usr/share/doc/r-cran-calibratr/
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Rscript --vanilla - {}
    
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30 ····"imports"·=·"····ggplot2·=·c(ylim·=·"ylim"),·graphics·=·c(hist·=·"hist"),·"30 ····"imports"·=·"····ggplot2·=·c(ylim·=·"ylim"),·graphics·=·c(hist·=·"hist"),·"
31 ····"imports"·=·"····pROC·=·c(roc·=·"roc"),·parallel·=·c(makeCluster·=·"makeCluster"),·"31 ····"imports"·=·"····pROC·=·c(roc·=·"roc"),·parallel·=·c(makeCluster·=·"makeCluster"),·"
32 ····"imports"·=·"····parallel·=·c(stopCluster·=·"stopCluster"),·reshape2·=·c(melt·=·"melt"),·"32 ····"imports"·=·"····parallel·=·c(stopCluster·=·"stopCluster"),·reshape2·=·c(melt·=·"melt"),·"
33 ····"imports"·=·"····stats·=·c(binom.test·=·"binom.test"),·stats·=·c(median·=·"median"),·"33 ····"imports"·=·"····stats·=·c(binom.test·=·"binom.test"),·stats·=·c(median·=·"median"),·"
34 ····"imports"·=·"····stats·=·c(na.omit·=·"na.omit"),·stats·=·c(sd·=·"sd"),·stats·=·c(setNames·=·"setNames"),·"34 ····"imports"·=·"····stats·=·c(na.omit·=·"na.omit"),·stats·=·c(sd·=·"sd"),·stats·=·c(setNames·=·"setNames"),·"
35 ····"imports"·=·"····stats·=·c(t.test·=·"t.test"))"35 ····"imports"·=·"····stats·=·c(t.test·=·"t.test"))"
36 ····"lazydata"·=·"<environment>"36 ····"lazydata"·=·"<environment>"
37 ····"path"·=·""/build/1st/r-cran-calibratr-0.1.2/debian/r-cran-calibratr/usr/lib/R/site-library/CalibratR""37 ····"path"·=·""/build/2/r-cran-calibratr-0.1.2/2nd/debian/r-cran-calibratr/usr/lib/R/site-library/CalibratR""
38 ····"spec"·=·"c(name·=·"CalibratR",·version·=·"0.1.2")"38 ····"spec"·=·"c(name·=·"CalibratR",·version·=·"0.1.2")"
39 }39 }
  
40 .__S3MethodsTable__.·(environment)·=·40 .__S3MethodsTable__.·(environment)·=·
41 {41 {
42 }42 }
  
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38 ············structure("probs_CV",·Rd_tag·=·"TEXT")),·list(structure("vector·of·calibrated·predictions·that·was·used·during·the·CV",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·38 ············structure("probs_CV",·Rd_tag·=·"TEXT")),·list(structure("vector·of·calibrated·predictions·that·was·used·during·the·CV",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
39 ········structure("\n",·Rd_tag·=·"TEXT"),·structure(list(list(39 ········structure("\n",·Rd_tag·=·"TEXT"),·structure(list(list(
40 ············structure("actual_CV",·Rd_tag·=·"TEXT")),·list(structure("respective·vector·of·true·values·(0·or·1)·that·was·used·during·the·CV",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·40 ············structure("actual_CV",·Rd_tag·=·"TEXT")),·list(structure("respective·vector·of·true·values·(0·or·1)·that·was·used·during·the·CV",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
41 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value"),·41 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value"),·
42 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("·##·Loading·dataset·in·environment\n",·Rd_tag·=·"RCODE"),·42 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("·##·Loading·dataset·in·environment\n",·Rd_tag·=·"RCODE"),·
43 ········structure("·data(example)\n",·Rd_tag·=·"RCODE"),·structure("·actual·<-·example$actual\n",·Rd_tag·=·"RCODE"),·43 ········structure("·data(example)\n",·Rd_tag·=·"RCODE"),·structure("·actual·<-·example$actual\n",·Rd_tag·=·"RCODE"),·
44 ········structure("·predicted·<-·example$predicted\n",·Rd_tag·=·"RCODE"),·44 ········structure("·predicted·<-·example$predicted\n",·Rd_tag·=·"RCODE"),·
45 ········structure("·BBQ_model·<-·CalibratR:::BBQ_CV(actual,·predicted,·method_for_prediction=0,·n_folds=4,·123,·1)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-calibratr-0.1.2/man/BBQ_CV.Rd",·class·=·"Rd",·meta·=·list(45 ········structure("·BBQ_model·<-·CalibratR:::BBQ_CV(actual,·predicted,·method_for_prediction=0,·n_folds=4,·123,·1)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-calibratr-0.1.2/2nd/man/BBQ_CV.Rd",·class·=·"Rd",·meta·=·list(
46 ····docType·=·character(0)),·prepared·=·3L)46 ····docType·=·character(0)),·prepared·=·3L)
  
47 GUESS_CV·(list)·=·structure(list(structure(list(structure("GUESS_CV",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·47 GUESS_CV·(list)·=·structure(list(structure(list(structure("GUESS_CV",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
48 ····structure(list(structure("GUESS_CV",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·48 ····structure(list(structure("GUESS_CV",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
49 ····structure(list(structure("GUESS_CV",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·49 ····structure(list(structure("GUESS_CV",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
50 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("trains·and·evaluates·the·GUESS·calibration·model·using·",·Rd_tag·=·"TEXT"),·50 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("trains·and·evaluates·the·GUESS·calibration·model·using·",·Rd_tag·=·"TEXT"),·
51 ········structure(list(structure("folds",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·51 ········structure(list(structure("folds",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·
Offset 81, 41 lines modifiedOffset 81, 41 lines modified
81 ············structure("type",·Rd_tag·=·"TEXT")),·list(structure("\"GUESS\"",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·81 ············structure("type",·Rd_tag·=·"TEXT")),·list(structure("\"GUESS\"",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
82 ········structure("\n",·Rd_tag·=·"TEXT"),·structure(list(list(82 ········structure("\n",·Rd_tag·=·"TEXT"),·structure(list(list(
83 ············structure("pred_idx",·Rd_tag·=·"TEXT")),·list(structure("which·prediction·method·was·used·during·CV",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·83 ············structure("pred_idx",·Rd_tag·=·"TEXT")),·list(structure("which·prediction·method·was·used·during·CV",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
84 ········structure("\n",·Rd_tag·=·"TEXT"),·structure(list(list(84 ········structure("\n",·Rd_tag·=·"TEXT"),·structure(list(list(
85 ············structure("probs_CV",·Rd_tag·=·"TEXT")),·list(structure("vector·of·calibrated·predictions·that·was·used·during·the·CV",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·85 ············structure("probs_CV",·Rd_tag·=·"TEXT")),·list(structure("vector·of·calibrated·predictions·that·was·used·during·the·CV",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
86 ········structure("\n",·Rd_tag·=·"TEXT"),·structure(list(list(86 ········structure("\n",·Rd_tag·=·"TEXT"),·structure(list(list(
87 ············structure("actual_CV",·Rd_tag·=·"TEXT")),·list(structure("respective·vector·of·true·values·(0·or·1)·that·was·used·during·the·CV",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·87 ············structure("actual_CV",·Rd_tag·=·"TEXT")),·list(structure("respective·vector·of·true·values·(0·or·1)·that·was·used·during·the·CV",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
88 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value")),·Rdfile·=·"/build/1st/r-cran-calibratr-0.1.2/man/GUESS_CV.Rd",·class·=·"Rd",·meta·=·list(88 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value")),·Rdfile·=·"/build/2/r-cran-calibratr-0.1.2/2nd/man/GUESS_CV.Rd",·class·=·"Rd",·meta·=·list(
89 ····docType·=·character(0)),·prepared·=·3L)89 ····docType·=·character(0)),·prepared·=·3L)
  
90 binom_for_histogram·(list)·=·structure(list(structure(list(structure("binom_for_histogram",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·90 binom_for_histogram·(list)·=·structure(list(structure(list(structure("binom_for_histogram",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
91 ····structure(list(structure("binom_for_histogram",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·91 ····structure(list(structure("binom_for_histogram",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
92 ····structure(list(structure("binom_for_histogram",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·92 ····structure(list(structure("binom_for_histogram",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
93 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("p_values·from·stats::binom.test·for·each·bin,·if·bin·is·empty,·a·p-value·of·2·is·returned\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·93 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("p_values·from·stats::binom.test·for·each·bin,·if·bin·is·empty,·a·p-value·of·2·is·returned\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·
94 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("binom_for_histogram(n_x)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·94 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("binom_for_histogram(n_x)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·
95 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(95 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(
96 ········list(structure("n_x",·Rd_tag·=·"TEXT")),·list(structure("numeric·vector·of·two·integers.·The·first·one·is·the·number·of·cases·in·the·bin;·the·second·the·number·of·instances·in·the·bin",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·96 ········list(structure("n_x",·Rd_tag·=·"TEXT")),·list(structure("numeric·vector·of·two·integers.·The·first·one·is·the·number·of·cases·in·the·bin;·the·second·the·number·of·instances·in·the·bin",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
97 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments"),·97 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments"),·
98 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("p-value·from·stats::binom.test·method\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value")),·Rdfile·=·"/build/1st/r-cran-calibratr-0.1.2/man/binom_for_histogram.Rd",·class·=·"Rd",·meta·=·list(98 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("p-value·from·stats::binom.test·method\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value")),·Rdfile·=·"/build/2/r-cran-calibratr-0.1.2/2nd/man/binom_for_histogram.Rd",·class·=·"Rd",·meta·=·list(
99 ····docType·=·character(0)),·prepared·=·3L)99 ····docType·=·character(0)),·prepared·=·3L)
  
100 build_BBQ·(list)·=·structure(list(structure(list(structure("build_BBQ",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·100 build_BBQ·(list)·=·structure(list(structure(list(structure("build_BBQ",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
101 ····structure(list(structure("build_BBQ",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·101 ····structure(list(structure("build_BBQ",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
102 ····structure(list(structure("build_BBQ",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·102 ····structure(list(structure("build_BBQ",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
103 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("This·method·builds·a·BBQ·calibration·model·using·the·trainings·set·provided.\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·103 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("This·method·builds·a·BBQ·calibration·model·using·the·trainings·set·provided.\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·
104 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("build_BBQ(actual,·predicted)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·104 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("build_BBQ(actual,·predicted)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·
105 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(105 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(
106 ········list(structure("actual",·Rd_tag·=·"TEXT")),·list(structure("vector·of·observed·class·labels·(0/1)",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·106 ········list(structure("actual",·Rd_tag·=·"TEXT")),·list(structure("vector·of·observed·class·labels·(0/1)",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
107 ········structure("\n",·Rd_tag·=·"TEXT"),·structure("\n",·Rd_tag·=·"TEXT"),·107 ········structure("\n",·Rd_tag·=·"TEXT"),·structure("\n",·Rd_tag·=·"TEXT"),·
108 ········structure(list(list(structure("predicted",·Rd_tag·=·"TEXT")),·108 ········structure(list(list(structure("predicted",·Rd_tag·=·"TEXT")),·
109 ············list(structure("vector·of·uncalibrated·predictions",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·109 ············list(structure("vector·of·uncalibrated·predictions",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
110 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments"),·110 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments"),·
111 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("Based·on·the·paper·(and·matlab·code)·:·\"Obtaining·Well·Calibrated·Probabilities·Using·Bayesian·Binning\"·by·Naeini,·Cooper·and·Hauskrecht:·;·https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4410090/\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\details"),·111 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("Based·on·the·paper·(and·matlab·code)·:·\"Obtaining·Well·Calibrated·Probabilities·Using·Bayesian·Binning\"·by·Naeini,·Cooper·and·Hauskrecht:·;·https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4410090/\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\details"),·
112 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("returns·the·BBQ·model·which·includes·models·for·all·evaluated·binning·schemes;·the·prunedmodel·contains·only·a·selection·of·BBQ·models·with·the·best·Bayesian·score\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value")),·Rdfile·=·"/build/1st/r-cran-calibratr-0.1.2/man/build_BBQ.Rd",·class·=·"Rd",·meta·=·list(112 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("returns·the·BBQ·model·which·includes·models·for·all·evaluated·binning·schemes;·the·prunedmodel·contains·only·a·selection·of·BBQ·models·with·the·best·Bayesian·score\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value")),·Rdfile·=·"/build/2/r-cran-calibratr-0.1.2/2nd/man/build_BBQ.Rd",·class·=·"Rd",·meta·=·list(
113 ····docType·=·character(0)),·prepared·=·3L)113 ····docType·=·character(0)),·prepared·=·3L)
  
114 build_GUESS·(list)·=·structure(list(structure(list(structure("build_GUESS",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·114 build_GUESS·(list)·=·structure(list(structure(list(structure("build_GUESS",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
115 ····structure(list(structure("build_GUESS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·115 ····structure(list(structure("build_GUESS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
116 ····structure(list(structure("build_GUESS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·116 ····structure(list(structure("build_GUESS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
117 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("This·method·builds·a·GUESS·calibration·model·using·the·trainings·set·provided.\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·117 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("This·method·builds·a·GUESS·calibration·model·using·the·trainings·set·provided.\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·
118 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("build_GUESS(actual,·predicted)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·118 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("build_GUESS(actual,·predicted)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·
Offset 126, 15 lines modifiedOffset 126, 15 lines modified
126 ············list(structure("vector·of·uncalibrated·predictions",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·126 ············list(structure("vector·of·uncalibrated·predictions",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
127 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments"),·127 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments"),·
128 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("returns·the·trained·GUESS·model·that·can·be·used·to·calibrate·a·test·set·using·the·",·Rd_tag·=·"TEXT"),·128 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("returns·the·trained·GUESS·model·that·can·be·used·to·calibrate·a·test·set·using·the·",·Rd_tag·=·"TEXT"),·
129 ········structure(list(structure(list(structure("predict_GUESS",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link")),·Rd_tag·=·"\\code"),·129 ········structure(list(structure(list(structure("predict_GUESS",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link")),·Rd_tag·=·"\\code"),·
130 ········structure("·method\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value"),·130 ········structure("·method\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value"),·
131 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(131 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure(list(
132 ········structure(list(structure("denscomp",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link",·Rd_option·=·structure("fitdistrplus",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\code"),·132 ········structure(list(structure("denscomp",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link",·Rd_option·=·structure("fitdistrplus",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\code"),·
133 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\seealso")),·Rdfile·=·"/build/1st/r-cran-calibratr-0.1.2/man/build_GUESS.Rd",·class·=·"Rd",·meta·=·list(133 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\seealso")),·Rdfile·=·"/build/2/r-cran-calibratr-0.1.2/2nd/man/build_GUESS.Rd",·class·=·"Rd",·meta·=·list(
134 ····docType·=·character(0)),·prepared·=·3L)134 ····docType·=·character(0)),·prepared·=·3L)
  
135 build_hist_binning·(list)·=·structure(list(structure(list(structure("build_hist_binning",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·135 build_hist_binning·(list)·=·structure(list(structure(list(structure("build_hist_binning",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
136 ····structure(list(structure("build_hist_binning",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·136 ····structure(list(structure("build_hist_binning",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
137 ····structure(list(structure("build_hist_binning",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·137 ····structure(list(structure("build_hist_binning",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
138 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("calculate·estimated·probability·per·bin,·input·predicted·and·real·score·as·numeric·vector;·builds·a·histogram·binning·model·which·can·be·used·to·calibrate·uncalibrated·predictions·using·the·predict_histogramm_binning·method\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·138 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("calculate·estimated·probability·per·bin,·input·predicted·and·real·score·as·numeric·vector;·builds·a·histogram·binning·model·which·can·be·used·to·calibrate·uncalibrated·predictions·using·the·predict_histogramm_binning·method\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\description"),·
139 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("build_hist_binning(actual,·predicted,·bins·=·NULL)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·139 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("build_hist_binning(actual,·predicted,·bins·=·NULL)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\usage"),·
Offset 146, 15 lines modifiedOffset 146, 15 lines modified
146 ········structure("\n",·Rd_tag·=·"TEXT"),·structure("\n",·Rd_tag·=·"TEXT"),·146 ········structure("\n",·Rd_tag·=·"TEXT"),·structure("\n",·Rd_tag·=·"TEXT"),·
147 ········structure(list(list(structure("bins",·Rd_tag·=·"TEXT")),·147 ········structure(list(list(structure("bins",·Rd_tag·=·"TEXT")),·
148 ············list(structure("number·of·bins·that·should·be·used·to·build·the·binning·model,·Default:·decide_on_break·estimates·optimal·number·of·bins",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·148 ············list(structure("number·of·bins·that·should·be·used·to·build·the·binning·model,·Default:·decide_on_break·estimates·optimal·number·of·bins",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
149 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments"),·149 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments"),·
150 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("if·trainings·set·is·smaller·then·threshold·(15·bins*5·elements=75),·number·of·bins·is·decreased\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\details"),·150 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("if·trainings·set·is·smaller·then·threshold·(15·bins*5·elements=75),·number·of·bins·is·decreased\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\details"),·
151 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("returns·the·trained·histogram·model·that·can·be·used·to·calibrate·a·test·set·using·the·",·Rd_tag·=·"TEXT"),·151 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("returns·the·trained·histogram·model·that·can·be·used·to·calibrate·a·test·set·using·the·",·Rd_tag·=·"TEXT"),·
152 ········structure(list(structure(list(structure("predict_hist_binning",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link")),·Rd_tag·=·"\\code"),·152 ········structure(list(structure(list(structure("predict_hist_binning",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link")),·Rd_tag·=·"\\code"),·
153 ········structure("·method\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value")),·Rdfile·=·"/build/1st/r-cran-calibratr-0.1.2/man/build_hist_binning.Rd",·class·=·"Rd",·meta·=·list(153 ········structure("·method\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value")),·Rdfile·=·"/build/2/r-cran-calibratr-0.1.2/2nd/man/build_hist_binning.Rd",·class·=·"Rd",·meta·=·list(
154 ····docType·=·character(0)),·prepared·=·3L)154 ····docType·=·character(0)),·prepared·=·3L)
  
155 calibrate·(list)·=·structure(list(structure(list(structure("calibrate",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·155 calibrate·(list)·=·structure(list(structure(list(structure("calibrate",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
156 ····structure(list(structure("calibrate",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·156 ····structure(list(structure("calibrate",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
157 ····structure(list(structure("calibrate",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·157 ····structure(list(structure("calibrate",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
158 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("Builds·selected·calibration·models·on·the·supplied·trainings·values·",·Rd_tag·=·"TEXT"),·158 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("Builds·selected·calibration·models·on·the·supplied·trainings·values·",·Rd_tag·=·"TEXT"),·
159 ········structure(list(structure("actual",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·159 ········structure(list(structure("actual",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·
Offset 238, 15 lines modifiedOffset 238, 15 lines modified
238 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("Johanna·Schwarz\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\author"),·238 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("Johanna·Schwarz\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\author"),·
239 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("·##·Loading·dataset·in·environment\n",·Rd_tag·=·"RCODE"),·239 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("·##·Loading·dataset·in·environment\n",·Rd_tag·=·"RCODE"),·
240 ········structure("·data(example)\n",·Rd_tag·=·"RCODE"),·structure("·actual·<-·example$actual\n",·Rd_tag·=·"RCODE"),·240 ········structure("·data(example)\n",·Rd_tag·=·"RCODE"),·structure("·actual·<-·example$actual\n",·Rd_tag·=·"RCODE"),·
241 ········structure("·predicted·<-·example$predicted\n",·Rd_tag·=·"RCODE"),·241 ········structure("·predicted·<-·example$predicted\n",·Rd_tag·=·"RCODE"),·
242 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("·##·Create·calibration·models\n",·Rd_tag·=·"RCODE"),·242 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("·##·Create·calibration·models\n",·Rd_tag·=·"RCODE"),·
243 ········structure("·calibration_model·<-·calibrate(actual,·predicted,\n",·Rd_tag·=·"RCODE"),·243 ········structure("·calibration_model·<-·calibrate(actual,·predicted,\n",·Rd_tag·=·"RCODE"),·
244 ········structure("······························model_idx·=·c(1,2),\n",·Rd_tag·=·"RCODE"),·244 ········structure("······························model_idx·=·c(1,2),\n",·Rd_tag·=·"RCODE"),·
245 ········structure("······························FALSE,·FALSE,·folds·=·10,·n_seeds·=·1,·nCores·=·2)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-calibratr-0.1.2/man/calibrate.Rd",·class·=·"Rd",·meta·=·list(245 ········structure("······························FALSE,·FALSE,·folds·=·10,·n_seeds·=·1,·nCores·=·2)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-calibratr-0.1.2/2nd/man/calibrate.Rd",·class·=·"Rd",·meta·=·list(
246 ····docType·=·character(0)),·prepared·=·3L)246 ····docType·=·character(0)),·prepared·=·3L)
  
247 calibrate_me·(list)·=·structure(list(structure(list(structure("calibrate_me",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·247 calibrate_me·(list)·=·structure(list(structure(list(structure("calibrate_me",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
248 ····structure(list(structure("calibrate_me",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·248 ····structure(list(structure("calibrate_me",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
249 ····structure(list(structure("calibrate_me",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·249 ····structure(list(structure("calibrate_me",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
250 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("trains·calibration·models·on·the·training·set·of·",·Rd_tag·=·"TEXT"),·250 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("trains·calibration·models·on·the·training·set·of·",·Rd_tag·=·"TEXT"),·
251 ········structure(list(structure("predicted",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·251 ········structure(list(structure("predicted",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·
Offset 265, 15 lines modifiedOffset 265, 15 lines modified
265 ············list(structure("a·single·number·from·1·to·5,·indicating·which·calibration·model·should·be·implemented,·1=hist_scaled,·2=hist_transformed,·3=BBQ_scaled,·4=BBQ_transformed,·5=GUESS",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·265 ············list(structure("a·single·number·from·1·to·5,·indicating·which·calibration·model·should·be·implemented,·1=hist_scaled,·2=hist_transformed,·3=BBQ_scaled,·4=BBQ_transformed,·5=GUESS",·Rd_tag·=·"TEXT"))),·Rd_tag·=·"\\item"),·
266 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments"),·266 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\arguments"),·
267 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("depending·on·the·value·of·",·Rd_tag·=·"TEXT"),·267 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("depending·on·the·value·of·",·Rd_tag·=·"TEXT"),·
268 ········structure(list(structure("model_idx",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·268 ········structure(list(structure("model_idx",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·
269 ········structure(",·the·respective·calibration·model·is·build·on·the·input·from·",·Rd_tag·=·"TEXT"),·269 ········structure(",·the·respective·calibration·model·is·build·on·the·input·from·",·Rd_tag·=·"TEXT"),·
270 ········structure(list(structure("actual",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·270 ········structure(list(structure("actual",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·
271 ········structure("·and·",·Rd_tag·=·"TEXT"),·structure(list(structure("predicted",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·271 ········structure("·and·",·Rd_tag·=·"TEXT"),·structure(list(structure("predicted",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·
272 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value")),·Rdfile·=·"/build/1st/r-cran-calibratr-0.1.2/man/calibrate_me.Rd",·class·=·"Rd",·meta·=·list(272 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\value")),·Rdfile·=·"/build/2/r-cran-calibratr-0.1.2/2nd/man/calibrate_me.Rd",·class·=·"Rd",·meta·=·list(
273 ····docType·=·character(0)),·prepared·=·3L)273 ····docType·=·character(0)),·prepared·=·3L)
  
274 calibrate_me_CV_errors·(list)·=·structure(list(structure(list(structure("calibrate_me_CV_errors",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·274 calibrate_me_CV_errors·(list)·=·structure(list(structure(list(structure("calibrate_me_CV_errors",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
275 ····structure(list(structure("calibrate_me_CV_errors",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·275 ····structure(list(structure("calibrate_me_CV_errors",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
276 ····structure(list(structure("calibrate_me_CV_errors",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·276 ····structure(list(structure("calibrate_me_CV_errors",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
277 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("trains·and·evaluates·calibration·models·using·",·Rd_tag·=·"TEXT"),·277 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("trains·and·evaluates·calibration·models·using·",·Rd_tag·=·"TEXT"),·
278 ········structure(list(structure("n_seeds",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·278 ········structure(list(structure("n_seeds",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·
Offset 313, 15 lines modifiedOffset 313, 15 lines modified
313 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("returns·all·trained·calibration·models·that·were·built·during·the·",·Rd_tag·=·"TEXT"),·313 ····structure(list(structure("\n",·Rd_tag·=·"TEXT"),·structure("returns·all·trained·calibration·models·that·were·built·during·the·",·Rd_tag·=·"TEXT"),·
314 ········structure(list(structure("n_seeds",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·314 ········structure(list(structure("n_seeds",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·
315 ········structure("-times·repeated·",·Rd_tag·=·"TEXT"),·structure(list(315 ········structure("-times·repeated·",·Rd_tag·=·"TEXT"),·structure(list(
316 ············structure("folds",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·316 ············structure("folds",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\code"),·
317 ········structure("-CV.\n",·Rd_tag·=·"TEXT"),·structure(list(),·Rd_tag·=·"\\cr"),·317 ········structure("-CV.\n",·Rd_tag·=·"TEXT"),·structure(list(),·Rd_tag·=·"\\cr"),·
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paths.rds-content
    
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