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1	·e~~1dfd~~362d5b2~~38465c~~4c7e32~~7582~~2ce6·11~~698~~0·doc·optional·python-gsd-doc_3.0.1-3_all.deb	1	·d3c0362db5f275f0da415cbf32c0f024·117000·doc·optional·python-gsd-doc_3.0.1-3_all.deb
2	·bac2de2b6b9ba21084634feb8b21685a·522296·debug·optional·python3-gsd-dbgsym_3.0.1-3_armhf.deb	2	·bac2de2b6b9ba21084634feb8b21685a·522296·debug·optional·python3-gsd-dbgsym_3.0.1-3_armhf.deb
3	·c69f48bc461f59d56db381b7544a3fc2·186836·python·optional·python3-gsd_3.0.1-3_armhf.deb	3	·c69f48bc461f59d56db381b7544a3fc2·186836·python·optional·python3-gsd_3.0.1-3_armhf.deb


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2	-rw-r--r--···0········0········0·····2548·2023-08-02·12:37:21.000000·control.tar.xz	2	-rw-r--r--···0········0········0·····2548·2023-08-02·12:37:21.000000·control.tar.xz
3	-rw-r--r--···0········0········0···114240·2023-08-02·12:37:21.000000·data.tar.xz	3	-rw-r--r--···0········0········0···114260·2023-08-02·12:37:21.000000·data.tar.xz


Offset 310, 23 lines modified		Offset 310, 23 lines modified
310	<span·class="gh">Out[16]:·</span><span·class="go">5</span>	310	<span·class="gh">Out[16]:·</span><span·class="go">5</span>

311	<span·class="gp">In·[17]:·</span><span·class="n">frame</span><span·class="o">.</span><span·class="n">particles</span><span·class="o">.</span><span·class="n">N</span>	311	<span·class="gp">In·[17]:·</span><span·class="n">frame</span><span·class="o">.</span><span·class="n">particles</span><span·class="o">.</span><span·class="n">N</span>
312	<span·class="gh">Out[17]:·</span><span·class="go">9</span>	312	<span·class="gh">Out[17]:·</span><span·class="go">9</span>

313	<span·class="gp">In·[18]:·</span><span·class="n">frame</span><span·class="o">.</span><span·class="n">particles</span><span·class="o">.</span><span·class="n">position</span>	313	<span·class="gp">In·[18]:·</span><span·class="n">frame</span><span·class="o">.</span><span·class="n">particles</span><span·class="o">.</span><span·class="n">position</span>
314	<span·class="gh">Out[18]:·</span>	314	<span·class="gh">Out[18]:·</span>
315	<span·class="go">array([[0.40039307,·0.99434954,·0.10246408],</span>
316	<span·class="go">·······[0.06876076,·0.87994385,·0.8579417·],</span>
317	<span·class="go">·······[0.38329616,·0.5371457·,·0.9643367·],</span>
318	<span·class="go">·······[0.6468892·,·0.730762··,·0.671027··],</span>
319	<span·class="go">·······[0.35040882,·0.4094625·,·0.84355944],</span>
320	<span·class="go">·······[0.46662906,·0.941722··,·0.76584077],</span>
321	<span·class="go">·······[0.94926435,·0.49257588,·0.5611686·],</span>
322	<span·class="go">·······[0.3486009·,·0.84582174,·0.22406223],</span>
323	<span·class="go">~~·······~~[0.94647~~8··~~,·0.4828~~322~~2,·0.~~8776~~1~~766]],·dtype=float32)~~</span>	315	<span·class="go">array([[6.65686727e-01,·6.98582709e-01,·8.52547526e-01],</span>
		316	<span·class="go">·······[3.37835640e-01,·8.69938254e-01,·4.82903779e-01],</span>
		317	<span·class="go">·······[6.52554512e-01,·9.48889077e-01,·1.17393650e-01],</span>
		318	<span·class="go">·······[1.97739413e-04,·6.25990212e-01,·7.27304280e-01],</span>
		319	<span·class="go">·······[1.53515264e-01,·2.71801114e-01,·1.70649678e-01],</span>
		320	<span·class="go">·······[1.86216608e-01,·7.67121315e-01,·1.20234296e-01],</span>
		321	<span·class="go">·······[4.68542367e-01,·8.75569344e-01,·1.09036034e-02],</span>
		322	<span·class="go">·······[4.38084632e-01,·3.75774980e-01,·6.68026865e-01],</span>
		323	<span·class="go">·······[4.76435721e-01,·6.19751573e-01,·8.24197590e-01]],·dtype=float32)</span>
324	</pre></div>	324	</pre></div>
325	</div>	325	</div>
326	<p><a·class="reference·internal"·href="python-module-gsd.hoomd.html#gsd.hoomd.HOOMDTrajectory"·title="gsd.hoomd.HOOMDTrajectory"><code·class="xref·any·py·py-class·docutils·literal·notranslate"><span·class="pre">gsd.hoomd.HOOMDTrajectory</span></code></a>·supports·random·indexing·of·frames·in·the·file.	326	<p><a·class="reference·internal"·href="python-module-gsd.hoomd.html#gsd.hoomd.HOOMDTrajectory"·title="gsd.hoomd.HOOMDTrajectory"><code·class="xref·any·py·py-class·docutils·literal·notranslate"><span·class="pre">gsd.hoomd.HOOMDTrajectory</span></code></a>·supports·random·indexing·of·frames·in·the·file.
327	Indexing·into·a·trajectory·returns·a·<a·class="reference·internal"·href="python-module-gsd.hoomd.html#gsd.hoomd.Frame"·title="gsd.hoomd.Frame"><code·class="xref·any·py·py-class·docutils·literal·notranslate"><span·class="pre">gsd.hoomd.Frame</span></code></a>.</p>	327	Indexing·into·a·trajectory·returns·a·<a·class="reference·internal"·href="python-module-gsd.hoomd.html#gsd.hoomd.Frame"·title="gsd.hoomd.Frame"><code·class="xref·any·py·py-class·docutils·literal·notranslate"><span·class="pre">gsd.hoomd.Frame</span></code></a>.</p>
328	</section>	328	</section>
329	<section·id="slicing-and-selection">	329	<section·id="slicing-and-selection">
330	<h2>Slicing·and·selection<a·class="headerlink"·href="#slicing-and-selection"·title="Link·to·this·heading">#</a></h2>	330	<h2>Slicing·and·selection<a·class="headerlink"·href="#slicing-and-selection"·title="Link·to·this·heading">#</a></h2>
Offset 353, 21 lines modified		Offset 353, 21 lines modified
353	<h2>Pure·python·reader<a·class="headerlink"·href="#pure-python-reader"·title="Link·to·this·heading">#</a></h2>	353	<h2>Pure·python·reader<a·class="headerlink"·href="#pure-python-reader"·title="Link·to·this·heading">#</a></h2>
354	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">In·[23]:·</span><span·class="n">f</span>·<span·class="o">=</span>·<span·class="n">gsd</span><span·class="o">.</span><span·class="n">pygsd</span><span·class="o">.</span><span·class="n">GSDFile</span><span·class="p">(</span><span·class="nb">open</span><span·class="p">(</span><span·class="s1">'example.gsd'</span><span·class="p">,</span>·<span·class="s1">'rb'</span><span·class="p">))</span>	354	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">In·[23]:·</span><span·class="n">f</span>·<span·class="o">=</span>·<span·class="n">gsd</span><span·class="o">.</span><span·class="n">pygsd</span><span·class="o">.</span><span·class="n">GSDFile</span><span·class="p">(</span><span·class="nb">open</span><span·class="p">(</span><span·class="s1">'example.gsd'</span><span·class="p">,</span>·<span·class="s1">'rb'</span><span·class="p">))</span>

355	<span·class="gp">In·[24]:·</span><span·class="n">trajectory</span>·<span·class="o">=</span>·<span·class="n">gsd</span><span·class="o">.</span><span·class="n">hoomd</span><span·class="o">.</span><span·class="n">HOOMDTrajectory</span><span·class="p">(</span><span·class="n">f</span><span·class="p">);</span>	355	<span·class="gp">In·[24]:·</span><span·class="n">trajectory</span>·<span·class="o">=</span>·<span·class="n">gsd</span><span·class="o">.</span><span·class="n">hoomd</span><span·class="o">.</span><span·class="n">HOOMDTrajectory</span><span·class="p">(</span><span·class="n">f</span><span·class="p">);</span>

356	<span·class="gp">In·[25]:·</span><span·class="n">trajectory</span><span·class="p">[</span><span·class="mi">3</span><span·class="p">]</span><span·class="o">.</span><span·class="n">particles</span><span·class="o">.</span><span·class="n">position</span>	356	<span·class="gp">In·[25]:·</span><span·class="n">trajectory</span><span·class="p">[</span><span·class="mi">3</span><span·class="p">]</span><span·class="o">.</span><span·class="n">particles</span><span·class="o">.</span><span·class="n">position</span>
357	<span·class="gh">Out[25]:·</span>	357	<span·class="gh">Out[25]:·</span>
358	<span·class="go">array([[0.~~73853~~356,·0.2753343·,·0.2149~~242~~·],</span>	358	<span·class="go">array([[0.910303··,·0.7384886·,·0.8179899·],</span>
359	<span·class="go">·······[0.~~62652504~~,·0.~~719~~15096,·0.~~547~~9~~8913~~],</span>	359	<span·class="go">·······[0.74037···,·0.14415053,·0.9039177·],</span>
360	<span·class="go">·······[0.~~6588~~6444,·0.3~~0511~~704,·0.6~~12627·~~·],</span>	360	<span·class="go">·······[0.94426143,·0.24477029,·0.6357065·],</span>
361	<span·class="go">·······[0.~~21213518~~,·0.~~1196993~~·,·0.~~33539~~37·],</span>	361	<span·class="go">·······[0.03951965,·0.8470701·,·0.47118354],</span>
362	<span·class="go">·······[0.8663125·,·0.9212821·,·0.20224068],</span>
363	<span·class="go">·······[0.39211458,·0.1~~807~~7596,·0.90534204],</span>	362	<span·class="go">·······[0.32188544,·0.6139978·,·0.05531228],</span>
		363	<span·class="go">·······[0.751679··,·0.9560624·,·0.27425295],</span>
364	<span·class="go">·······[0.~~99311~~93·,·0.~~66800~~7··,·0.~~78784114~~]],·dtype=float32)</span>	364	<span·class="go">·······[0.25444984,·0.3156979·,·0.05031436]],·dtype=float32)</span>
365	</pre></div>	365	</pre></div>
366	</div>	366	</div>
367	<p>You·can·use·<strong>GSD</strong>·without·needing·to·compile·C·code·to·read·<strong>GSD</strong>·files	367	<p>You·can·use·<strong>GSD</strong>·without·needing·to·compile·C·code·to·read·<strong>GSD</strong>·files
368	using·<a·class="reference·internal"·href="python-module-gsd.pygsd.html#gsd.pygsd.GSDFile"·title="gsd.pygsd.GSDFile"><code·class="xref·any·py·py-class·docutils·literal·notranslate"><span·class="pre">gsd.pygsd.GSDFile</span></code></a>·in·combination·with·<a·class="reference·internal"·href="python-module-gsd.hoomd.html#gsd.hoomd.HOOMDTrajectory"·title="gsd.hoomd.HOOMDTrajectory"><code·class="xref·any·py·py-class·docutils·literal·notranslate"><span·class="pre">gsd.hoomd.HOOMDTrajectory</span></code></a>.·It	368	using·<a·class="reference·internal"·href="python-module-gsd.pygsd.html#gsd.pygsd.GSDFile"·title="gsd.pygsd.GSDFile"><code·class="xref·any·py·py-class·docutils·literal·notranslate"><span·class="pre">gsd.pygsd.GSDFile</span></code></a>·in·combination·with·<a·class="reference·internal"·href="python-module-gsd.hoomd.html#gsd.hoomd.HOOMDTrajectory"·title="gsd.hoomd.HOOMDTrajectory"><code·class="xref·any·py·py-class·docutils·literal·notranslate"><span·class="pre">gsd.hoomd.HOOMDTrajectory</span></code></a>.·It
369	only·supports·the·<code·class="docutils·literal·notranslate"><span·class="pre">rb</span></code>·mode·and·does·not·read·files·as·fast·as·the·C	369	only·supports·the·<code·class="docutils·literal·notranslate"><span·class="pre">rb</span></code>·mode·and·does·not·read·files·as·fast·as·the·C
370	implementation.·It·takes·in·a·python·file-like·object,·so·it·can·be·used·with	370	implementation.·It·takes·in·a·python·file-like·object,·so·it·can·be·used·with
371	in-memory·IO·classes,·and·grid·file·classes·that·access·data·over·the·internet.</p>	371	in-memory·IO·classes,·and·grid·file·classes·that·access·data·over·the·internet.</p>


Offset 118, 23 lines modified		Offset 118, 23 lines modified
118	Out[16]:·5	118	Out[16]:·5

119	In·[17]:·frame.particles.N	119	In·[17]:·frame.particles.N
120	Out[17]:·9	120	Out[17]:·9

121	In·[18]:·frame.particles.position	121	In·[18]:·frame.particles.position
122	Out[18]:	122	Out[18]:
123	array([[0.40039307,·0.99434954,·0.10246408],
124	·······[0.06876076,·0.87994385,·0.8579417·],
125	·······[0.38329616,·0.5371457·,·0.9643367·],
126	·······[0.6468892·,·0.730762··,·0.671027··],
127	·······[0.35040882,·0.4094625·,·0.84355944],
128	·······[0.46662906,·0.941722··,·0.76584077],
129	·······[0.94926435,·0.49257588,·0.5611686·],
130	·······[0.3486009·,·0.84582174,·0.22406223],
131	~~·······~~[0.94647~~8··~~,·0.4828~~322~~2,·0.~~8776~~1~~766]],·dtype=float32)~~	123	array([[6.65686727e-01,·6.98582709e-01,·8.52547526e-01],
		124	·······[3.37835640e-01,·8.69938254e-01,·4.82903779e-01],
		125	·······[6.52554512e-01,·9.48889077e-01,·1.17393650e-01],
		126	·······[1.97739413e-04,·6.25990212e-01,·7.27304280e-01],
		127	·······[1.53515264e-01,·2.71801114e-01,·1.70649678e-01],
		128	·······[1.86216608e-01,·7.67121315e-01,·1.20234296e-01],
		129	·······[4.68542367e-01,·8.75569344e-01,·1.09036034e-02],
		130	·······[4.38084632e-01,·3.75774980e-01,·6.68026865e-01],
		131	·······[4.76435721e-01,·6.19751573e-01,·8.24197590e-01]],·dtype=float32)
132	gsd.hoomd.HOOMDTrajectory·supports·random·indexing·of·frames·in·the·file.	132	gsd.hoomd.HOOMDTrajectory·supports·random·indexing·of·frames·in·the·file.
133	Indexing·into·a·trajectory·returns·a·gsd.hoomd.Frame.	133	Indexing·into·a·trajectory·returns·a·gsd.hoomd.Frame.

134	***·Slicing·and·selection#·***	134	***·Slicing·and·selection#·***
135	Use·the·slicing·operator·to·select·individual·frames·or·a·subset·of·a	135	Use·the·slicing·operator·to·select·individual·frames·or·a·subset·of·a
136	trajectory.	136	trajectory.
137	In·[19]:·f·=·gsd.hoomd.open(name='example.gsd',·mode='r')	137	In·[19]:·f·=·gsd.hoomd.open(name='example.gsd',·mode='r')
Offset 155, 21 lines modified		Offset 155, 21 lines modified
155	***·Pure·python·reader#·***	155	***·Pure·python·reader#·***
156	In·[23]:·f·=·gsd.pygsd.GSDFile(open('example.gsd',·'rb'))	156	In·[23]:·f·=·gsd.pygsd.GSDFile(open('example.gsd',·'rb'))

157	In·[24]:·trajectory·=·gsd.hoomd.HOOMDTrajectory(f);	157	In·[24]:·trajectory·=·gsd.hoomd.HOOMDTrajectory(f);

158	In·[25]:·trajectory[3].particles.position	158	In·[25]:·trajectory[3].particles.position
159	Out[25]:	159	Out[25]:
160	array([[0.73853356,·0.2753343·,·0.2149242·],
161	·······[0.62652504,·0.71915096,·0.54798913],
162	·······[0.65886444,·0.30511704,·0.612627··],
163	·······[0.21213518,·0.1196993·,·0.3353937·],
164	·······[0.8663125·,·0.9212821·,·0.20224068],
165	·······[0.39211458,·0.18077596,·0.90534204],
166	~~·······~~[0.99311~~93·,·~~0~~.668~~007··,·0.787841~~14]]~~,·dt~~ype=float32)~~	160	array([[0.910303··,·0.7384886·,·0.8179899·],
		161	·······[0.74037···,·0.14415053,·0.9039177·],
		162	·······[0.94426143,·0.24477029,·0.6357065·],
		163	·······[0.03951965,·0.8470701·,·0.47118354],
		164	·······[0.32188544,·0.6139978·,·0.05531228],
		165	·······[0.751679··,·0.9560624·,·0.27425295],
		166	·······[0.25444984,·0.3156979·,·0.05031436]],·dtype=float32)
167	You·can·use·GSD·without·needing·to·compile·C·code·to·read·GSD·files·using	167	You·can·use·GSD·without·needing·to·compile·C·code·to·read·GSD·files·using
168	gsd.pygsd.GSDFile·in·combination·with·gsd.hoomd.HOOMDTrajectory.·It·only	168	gsd.pygsd.GSDFile·in·combination·with·gsd.hoomd.HOOMDTrajectory.·It·only
169	supports·the·rb·mode·and·does·not·read·files·as·fast·as·the·C·implementation.	169	supports·the·rb·mode·and·does·not·read·files·as·fast·as·the·C·implementation.
170	It·takes·in·a·python·file-like·object,·so·it·can·be·used·with·in-memory·IO	170	It·takes·in·a·python·file-like·object,·so·it·can·be·used·with·in-memory·IO
171	classes,·and·grid·file·classes·that·access·data·over·the·internet.	171	classes,·and·grid·file·classes·that·access·data·over·the·internet.
172	Warning	172	Warning
173	gsd.pygsd·is·slow.·Use·gsd.hoomd.open·whenever·possible.	173	gsd.pygsd·is·slow.·Use·gsd.hoomd.open·whenever·possible.


Offset 51, 29 lines modified		Offset 51, 29 lines modified
51	-rw-r--r--···0·root·········(0)·root·········(0)····16308·2023-08-02·12:37:21.000000·./usr/share/doc/python-gsd-doc/html/cli.html	51	-rw-r--r--···0·root·········(0)·root·········(0)····16308·2023-08-02·12:37:21.000000·./usr/share/doc/python-gsd-doc/html/cli.html
52	-rw-r--r--···0·root·········(0)·root·········(0)····15084·2023-08-02·12:37:21.000000·./usr/share/doc/python-gsd-doc/html/community.html	52	-rw-r--r--···0·root·········(0)·root·········(0)····15084·2023-08-02·12:37:21.000000·./usr/share/doc/python-gsd-doc/html/community.html
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