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1 | ·8 | 1 | ·8ea22dc63f94d3c2ce2b4ebd0aec0ac0·82684·python·optional·pyqi_0.3.2+dfsg-12_all.deb |
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44 | ········<a·class="uplink"·href="../index.html">Contents</a> | 44 | ········<a·class="uplink"·href="../index.html">Contents</a> |
45 | ········</p> | 45 | ········</p> |
46 | ······</div> | 46 | ······</div> |
47 | ····<div·class="footer"·role="contentinfo"> | 47 | ····<div·class="footer"·role="contentinfo"> |
48 | ····©·Copyright·2013,·The·BiPy·Development·Team. | 48 | ····©·Copyright·2013,·The·BiPy·Development·Team. |
49 | ······Last·updated·on·Dec· | 49 | ······Last·updated·on·Dec·10,·2024. |
50 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. | 50 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. |
51 | ····</div> | 51 | ····</div> |
52 | ··</body> | 52 | ··</body> |
53 | </html> | 53 | </html> |
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1 | *\x8**\x8**\x8**\x8**\x8**\x8*·_\x8p\x8p_\x8y\x8y_\x8q\x8q_\x8i\x8i_\x8:\x8:_\x8·_\x8e\x8e_\x8x\x8x_\x8p\x8p_\x8o\x8o_\x8s\x8s_\x8e\x8e_\x8·_\x8y\x8y_\x8o\x8o_\x8u\x8u_\x8r\x8r_\x8·_\x8i\x8i_\x8n\x8n_\x8t\x8t_\x8e\x8e_\x8r\x8r_\x8f\x8f_\x8a\x8a_\x8c\x8c_\x8e\x8e·*\x8**\x8**\x8**\x8**\x8**\x8* | 1 | *\x8**\x8**\x8**\x8**\x8**\x8*·_\x8p\x8p_\x8y\x8y_\x8q\x8q_\x8i\x8i_\x8:\x8:_\x8·_\x8e\x8e_\x8x\x8x_\x8p\x8p_\x8o\x8o_\x8s\x8s_\x8e\x8e_\x8·_\x8y\x8y_\x8o\x8o_\x8u\x8u_\x8r\x8r_\x8·_\x8i\x8i_\x8n\x8n_\x8t\x8t_\x8e\x8e_\x8r\x8r_\x8f\x8f_\x8a\x8a_\x8c\x8c_\x8e\x8e·*\x8**\x8**\x8**\x8**\x8**\x8* |
2 | *\x8**\x8**\x8**\x8**\x8*·p\x8py\x8yq\x8qi\x8i·c\x8co\x8od\x8di\x8in\x8ng\x8g·g\x8gu\x8ui\x8id\x8de\x8el\x8li\x8in\x8ne\x8es\x8s·*\x8**\x8**\x8**\x8**\x8* | 2 | *\x8**\x8**\x8**\x8**\x8*·p\x8py\x8yq\x8qi\x8i·c\x8co\x8od\x8di\x8in\x8ng\x8g·g\x8gu\x8ui\x8id\x8de\x8el\x8li\x8in\x8ne\x8es\x8s·*\x8**\x8**\x8**\x8**\x8* |
3 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s | 3 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s |
4 | *\x8**\x8**\x8**\x8**\x8**\x8*·p\x8py\x8yq\x8qi\x8i·c\x8co\x8od\x8di\x8in\x8ng\x8g·g\x8gu\x8ui\x8id\x8de\x8el\x8li\x8in\x8ne\x8es\x8s_\x8?\x8¶·*\x8**\x8**\x8**\x8**\x8**\x8* | 4 | *\x8**\x8**\x8**\x8**\x8**\x8*·p\x8py\x8yq\x8qi\x8i·c\x8co\x8od\x8di\x8in\x8ng\x8g·g\x8gu\x8ui\x8id\x8de\x8el\x8li\x8in\x8ne\x8es\x8s_\x8?\x8¶·*\x8**\x8**\x8**\x8**\x8**\x8* |
5 | ····*·_\x8G_\x8u_\x8i_\x8d_\x8e_\x8l_\x8i_\x8n_\x8e_\x8s_\x8·_\x8f_\x8o_\x8r_\x8·_\x8c_\x8r_\x8e_\x8a_\x8t_\x8i_\x8n_\x8g_\x8·_\x8p_\x8y_\x8q_\x8i_\x8-_\x8b_\x8a_\x8s_\x8e_\x8d_\x8·_\x8o_\x8p_\x8t_\x8p_\x8a_\x8r_\x8s_\x8e_\x8·_\x8i_\x8n_\x8t_\x8e_\x8r_\x8f_\x8a_\x8c_\x8e_\x8s | 5 | ····*·_\x8G_\x8u_\x8i_\x8d_\x8e_\x8l_\x8i_\x8n_\x8e_\x8s_\x8·_\x8f_\x8o_\x8r_\x8·_\x8c_\x8r_\x8e_\x8a_\x8t_\x8i_\x8n_\x8g_\x8·_\x8p_\x8y_\x8q_\x8i_\x8-_\x8b_\x8a_\x8s_\x8e_\x8d_\x8·_\x8o_\x8p_\x8t_\x8p_\x8a_\x8r_\x8s_\x8e_\x8·_\x8i_\x8n_\x8t_\x8e_\x8r_\x8f_\x8a_\x8c_\x8e_\x8s |
6 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s | 6 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s |
7 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec· | 7 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec·10,·2024. |
8 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. | 8 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. |
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48 | ········<a·class="uplink"·href="../index.html">Contents</a> | 48 | ········<a·class="uplink"·href="../index.html">Contents</a> |
49 | ········</p> | 49 | ········</p> |
50 | ······</div> | 50 | ······</div> |
51 | ····<div·class="footer"·role="contentinfo"> | 51 | ····<div·class="footer"·role="contentinfo"> |
52 | ····©·Copyright·2013,·The·BiPy·Development·Team. | 52 | ····©·Copyright·2013,·The·BiPy·Development·Team. |
53 | ······Last·updated·on·Dec· | 53 | ······Last·updated·on·Dec·10,·2024. |
54 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. | 54 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. |
55 | ····</div> | 55 | ····</div> |
56 | ··</body> | 56 | ··</body> |
57 | </html> | 57 | </html> |
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51 | found·that·this·is·the·most·convenient·way·for·users·to·define·where·the·output | 51 | found·that·this·is·the·most·convenient·way·for·users·to·define·where·the·output |
52 | of·scripts·should·live,·but·there·are·likely·special·cases·where·you'd·want·to | 52 | of·scripts·should·live,·but·there·are·likely·special·cases·where·you'd·want·to |
53 | deviate·from·this·general·guideline.·Do·a\x8al\x8lw\x8wa\x8ay\x8ys\x8s·give·the·user·control·over·the | 53 | deviate·from·this·general·guideline.·Do·a\x8al\x8lw\x8wa\x8ay\x8ys\x8s·give·the·user·control·over·the |
54 | name·of·either·the·file·or·the·directory·where·output·will·be·created.·You | 54 | name·of·either·the·file·or·the·directory·where·output·will·be·created.·You |
55 | don't·want·them·to·have·to·move·a·file·to·a·different·location·if·they·want·to | 55 | don't·want·them·to·have·to·move·a·file·to·a·different·location·if·they·want·to |
56 | run·your·script·multiple·times. | 56 | run·your·script·multiple·times. |
57 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s | 57 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s |
58 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec· | 58 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec·10,·2024. |
59 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. | 59 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. |
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66 | ········<a·class="uplink"·href="#">Contents</a> | 66 | ········<a·class="uplink"·href="#">Contents</a> |
67 | ········</p> | 67 | ········</p> |
68 | ······</div> | 68 | ······</div> |
69 | ····<div·class="footer"·role="contentinfo"> | 69 | ····<div·class="footer"·role="contentinfo"> |
70 | ····©·Copyright·2013,·The·BiPy·Development·Team. | 70 | ····©·Copyright·2013,·The·BiPy·Development·Team. |
71 | ······Last·updated·on·Dec· | 71 | ······Last·updated·on·Dec·10,·2024. |
72 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. | 72 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. |
73 | ····</div> | 73 | ····</div> |
74 | ··</body> | 74 | ··</body> |
75 | </html> | 75 | </html> |
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48 | Yes!·pyqi·is·open·source·software,·available·under·the·BSD·license.·All·source | 48 | Yes!·pyqi·is·open·source·software,·available·under·the·BSD·license.·All·source |
49 | code·is·hosted·in·the·_\x8p_\x8y_\x8q_\x8i_\x8·_\x8G_\x8i_\x8t_\x8H_\x8u_\x8b_\x8·_\x8r_\x8e_\x8p_\x8o_\x8s_\x8i_\x8t_\x8o_\x8r_\x8y. | 49 | code·is·hosted·in·the·_\x8p_\x8y_\x8q_\x8i_\x8·_\x8G_\x8i_\x8t_\x8H_\x8u_\x8b_\x8·_\x8r_\x8e_\x8p_\x8o_\x8s_\x8i_\x8t_\x8o_\x8r_\x8y. |
50 | Development·is·primarily·occurring·in·the·_\x8C_\x8a_\x8p_\x8o_\x8r_\x8a_\x8s_\x8o_\x8·_\x8L_\x8a_\x8b·(Northern·Arizona | 50 | Development·is·primarily·occurring·in·the·_\x8C_\x8a_\x8p_\x8o_\x8r_\x8a_\x8s_\x8o_\x8·_\x8L_\x8a_\x8b·(Northern·Arizona |
51 | University;·Argonne·National·Laboratories)·and·_\x8K_\x8n_\x8i_\x8g_\x8h_\x8t_\x8·_\x8L_\x8a_\x8b·(University·of | 51 | University;·Argonne·National·Laboratories)·and·_\x8K_\x8n_\x8i_\x8g_\x8h_\x8t_\x8·_\x8L_\x8a_\x8b·(University·of |
52 | Colorado;·Howard·Hughes·Medical·Institute),·but·the·goal·is·for·pyqi·to·be·a | 52 | Colorado;·Howard·Hughes·Medical·Institute),·but·the·goal·is·for·pyqi·to·be·a |
53 | very·open·development·effort.·We·accept·code·submissions·as·_\x8p_\x8u_\x8l_\x8l_\x8·_\x8r_\x8e_\x8q_\x8u_\x8e_\x8s_\x8t_\x8s. | 53 | very·open·development·effort.·We·accept·code·submissions·as·_\x8p_\x8u_\x8l_\x8l_\x8·_\x8r_\x8e_\x8q_\x8u_\x8e_\x8s_\x8t_\x8s. |
54 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s | 54 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s |
55 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec· | 55 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec·10,·2024. |
56 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. | 56 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. |
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80 | ········<a·class="uplink"·href="../index.html">Contents</a> | 80 | ········<a·class="uplink"·href="../index.html">Contents</a> |
81 | ········</p> | 81 | ········</p> |
82 | ······</div> | 82 | ······</div> |
83 | ····<div·class="footer"·role="contentinfo"> | 83 | ····<div·class="footer"·role="contentinfo"> |
84 | ····©·Copyright·2013,·The·BiPy·Development·Team. | 84 | ····©·Copyright·2013,·The·BiPy·Development·Team. |
85 | ······Last·updated·on·Dec· | 85 | ······Last·updated·on·Dec·10,·2024. |
86 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. | 86 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. |
87 | ····</div> | 87 | ····</div> |
88 | ··</body> | 88 | ··</body> |
89 | </html> | 89 | </html> |
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45 | do | 45 | do |
46 | ···source·$f; | 46 | ···source·$f; |
47 | done | 47 | done |
48 | When·you·open·a·new·terminal,·tab·completion·should·work·for·the·pyqi·commands | 48 | When·you·open·a·new·terminal,·tab·completion·should·work·for·the·pyqi·commands |
49 | and·their·options.·You·can·test·this·by·typing·pyqi·make-c·and·then·hitting·the | 49 | and·their·options.·You·can·test·this·by·typing·pyqi·make-c·and·then·hitting·the |
50 | tab·key·(there·should·be·no·space·after·pyqi·make-c). | 50 | tab·key·(there·should·be·no·space·after·pyqi·make-c). |
51 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s | 51 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s |
52 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec· | 52 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec·10,·2024. |
53 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. | 53 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. |
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68 | ········<a·class="uplink"·href="index.html">Contents</a> | 68 | ········<a·class="uplink"·href="index.html">Contents</a> |
69 | ········</p> | 69 | ········</p> |
70 | ······</div> | 70 | ······</div> |
71 | ····<div·class="footer"·role="contentinfo"> | 71 | ····<div·class="footer"·role="contentinfo"> |
72 | ····©·Copyright·2013,·The·BiPy·Development·Team. | 72 | ····©·Copyright·2013,·The·BiPy·Development·Team. |
73 | ······Last·updated·on·Dec· | 73 | ······Last·updated·on·Dec·10,·2024. |
74 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. | 74 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. |
75 | ····</div> | 75 | ····</div> |
76 | ··</body> | 76 | ··</body> |
77 | </html> | 77 | </html> |
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2 | *\x8**\x8**\x8**\x8**\x8*·S\x8Se\x8ea\x8ar\x8rc\x8ch\x8h·*\x8**\x8**\x8**\x8**\x8* | 2 | *\x8**\x8**\x8**\x8**\x8*·S\x8Se\x8ea\x8ar\x8rc\x8ch\x8h·*\x8**\x8**\x8**\x8**\x8* |
3 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s | 3 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s |
4 | *\x8**\x8**\x8**\x8**\x8**\x8*·S\x8Se\x8ea\x8ar\x8rc\x8ch\x8h·*\x8**\x8**\x8**\x8**\x8**\x8* | 4 | *\x8**\x8**\x8**\x8**\x8**\x8*·S\x8Se\x8ea\x8ar\x8rc\x8ch\x8h·*\x8**\x8**\x8**\x8**\x8**\x8* |
5 | Please·activate·JavaScript·to·enable·the·search·functionality. | 5 | Please·activate·JavaScript·to·enable·the·search·functionality. |
6 | Searching·for·multiple·words·only·shows·matches·that·contain·all·words. | 6 | Searching·for·multiple·words·only·shows·matches·that·contain·all·words. |
7 | [q···················][search] | 7 | [q···················][search] |
8 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s | 8 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s |
9 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec· | 9 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec·10,·2024. |
10 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. | 10 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. |
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226 | ········<a·class="uplink"·href="../index.html">Contents</a> | 226 | ········<a·class="uplink"·href="../index.html">Contents</a> |
227 | ········</p> | 227 | ········</p> |
228 | ······</div> | 228 | ······</div> |
229 | ····<div·class="footer"·role="contentinfo"> | 229 | ····<div·class="footer"·role="contentinfo"> |
230 | ····©·Copyright·2013,·The·BiPy·Development·Team. | 230 | ····©·Copyright·2013,·The·BiPy·Development·Team. |
231 | ······Last·updated·on·Dec· | 231 | ······Last·updated·on·Dec·10,·2024. |
232 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. | 232 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. |
233 | ····</div> | 233 | ····</div> |
234 | ··</body> | 234 | ··</body> |
235 | </html> | 235 | </html> |
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223 | #·For·example,·we·can·call·the·command·again·passing·the | 223 | #·For·example,·we·can·call·the·command·again·passing·the |
224 | #·suppress_length_summary·parameter. | 224 | #·suppress_length_summary·parameter. |
225 | >>>·r·=·s(seqs=[('sequence1','ACCGTGGACCAA'), | 225 | >>>·r·=·s(seqs=[('sequence1','ACCGTGGACCAA'), |
226 | ('sequence2','TGTGGA')],suppress_length_summary=True) | 226 | ('sequence2','TGTGGA')],suppress_length_summary=True) |
227 | >>>·r | 227 | >>>·r |
228 | {'max_length':·None,·'min_length':·None,·'num_seqs':·2} | 228 | {'max_length':·None,·'min_length':·None,·'num_seqs':·2} |
229 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s | 229 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s |
230 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec· | 230 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec·10,·2024. |
231 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. | 231 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. |
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520 | ········<a·class="uplink"·href="../index.html">Contents</a> | 520 | ········<a·class="uplink"·href="../index.html">Contents</a> |
521 | ········</p> | 521 | ········</p> |
522 | ······</div> | 522 | ······</div> |
523 | ····<div·class="footer"·role="contentinfo"> | 523 | ····<div·class="footer"·role="contentinfo"> |
524 | ····©·Copyright·2013,·The·BiPy·Development·Team. | 524 | ····©·Copyright·2013,·The·BiPy·Development·Team. |
525 | ······Last·updated·on·Dec· | 525 | ······Last·updated·on·Dec·10,·2024. |
526 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. | 526 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. |
527 | ····</div> | 527 | ····</div> |
528 | ··</body> | 528 | ··</body> |
529 | </html> | 529 | </html> |
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548 | multiple_choice····one·or·more·values·from·a·list·of·choices | 548 | multiple_choice····one·or·more·values·from·a·list·of·choices |
549 | blast_db···········a·blast·database | 549 | blast_db···········a·blast·database |
550 | *\x8**\x8**\x8**\x8**\x8*·T\x8Th\x8ho\x8ou\x8ug\x8gh\x8ht\x8ts\x8s·a\x8an\x8nd\x8d·g\x8gu\x8ui\x8id\x8de\x8el\x8li\x8in\x8ne\x8es\x8s·o\x8on\x8n·d\x8de\x8es\x8si\x8ig\x8gn\x8ni\x8in\x8ng\x8g·c\x8co\x8om\x8mm\x8ma\x8an\x8nd\x8d·l\x8li\x8in\x8ne\x8e·i\x8in\x8nt\x8te\x8er\x8rf\x8fa\x8ac\x8ce\x8es\x8s_\x8?\x8¶·*\x8**\x8**\x8**\x8**\x8* | 550 | *\x8**\x8**\x8**\x8**\x8*·T\x8Th\x8ho\x8ou\x8ug\x8gh\x8ht\x8ts\x8s·a\x8an\x8nd\x8d·g\x8gu\x8ui\x8id\x8de\x8el\x8li\x8in\x8ne\x8es\x8s·o\x8on\x8n·d\x8de\x8es\x8si\x8ig\x8gn\x8ni\x8in\x8ng\x8g·c\x8co\x8om\x8mm\x8ma\x8an\x8nd\x8d·l\x8li\x8in\x8ne\x8e·i\x8in\x8nt\x8te\x8er\x8rf\x8fa\x8ac\x8ce\x8es\x8s_\x8?\x8¶·*\x8**\x8**\x8**\x8**\x8* |
551 | Based·on·our·experiences·developing·command·line·interfaces·for·_\x8Q_\x8I_\x8I_\x8M_\x8E,·we've | 551 | Based·on·our·experiences·developing·command·line·interfaces·for·_\x8Q_\x8I_\x8I_\x8M_\x8E,·we've |
552 | compiled·some·thoughts·on·best·practices,·which·you·can·find·in·_\x8G_\x8u_\x8i_\x8d_\x8e_\x8l_\x8i_\x8n_\x8e_\x8s_\x8·_\x8f_\x8o_\x8r | 552 | compiled·some·thoughts·on·best·practices,·which·you·can·find·in·_\x8G_\x8u_\x8i_\x8d_\x8e_\x8l_\x8i_\x8n_\x8e_\x8s_\x8·_\x8f_\x8o_\x8r |
553 | _\x8c_\x8r_\x8e_\x8a_\x8t_\x8i_\x8n_\x8g_\x8·_\x8p_\x8y_\x8q_\x8i_\x8-_\x8b_\x8a_\x8s_\x8e_\x8d_\x8·_\x8o_\x8p_\x8t_\x8p_\x8a_\x8r_\x8s_\x8e_\x8·_\x8i_\x8n_\x8t_\x8e_\x8r_\x8f_\x8a_\x8c_\x8e_\x8s. | 553 | _\x8c_\x8r_\x8e_\x8a_\x8t_\x8i_\x8n_\x8g_\x8·_\x8p_\x8y_\x8q_\x8i_\x8-_\x8b_\x8a_\x8s_\x8e_\x8d_\x8·_\x8o_\x8p_\x8t_\x8p_\x8a_\x8r_\x8s_\x8e_\x8·_\x8i_\x8n_\x8t_\x8e_\x8r_\x8f_\x8a_\x8c_\x8e_\x8s. |
554 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s | 554 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s |
555 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec· | 555 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec·10,·2024. |
556 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. | 556 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. |
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84 | ········<a·class="uplink"·href="../index.html">Contents</a> | 84 | ········<a·class="uplink"·href="../index.html">Contents</a> |
85 | ········</p> | 85 | ········</p> |
86 | ······</div> | 86 | ······</div> |
87 | ····<div·class="footer"·role="contentinfo"> | 87 | ····<div·class="footer"·role="contentinfo"> |
88 | ····©·Copyright·2013,·The·BiPy·Development·Team. | 88 | ····©·Copyright·2013,·The·BiPy·Development·Team. |
89 | ······Last·updated·on·Dec· | 89 | ······Last·updated·on·Dec·10,·2024. |
90 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. | 90 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. |
91 | ····</div> | 91 | ····</div> |
92 | ··</body> | 92 | ··</body> |
93 | </html> | 93 | </html> |
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58 | for·f·in·~/.bash_completion.d/*; | 58 | for·f·in·~/.bash_completion.d/*; |
59 | do | 59 | do |
60 | ···source·$f; | 60 | ···source·$f; |
61 | done | 61 | done |
62 | When·you·open·a·new·terminal,·tab·completion·should·work·for·the·my-project | 62 | When·you·open·a·new·terminal,·tab·completion·should·work·for·the·my-project |
63 | commands·and·their·options. | 63 | commands·and·their·options. |
64 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s | 64 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s |
65 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec· | 65 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec·10,·2024. |
66 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. | 66 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. |
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93 | ········<a·class="uplink"·href="../index.html">Contents</a> | 93 | ········<a·class="uplink"·href="../index.html">Contents</a> |
94 | ········</p> | 94 | ········</p> |
95 | ······</div> | 95 | ······</div> |
96 | ····<div·class="footer"·role="contentinfo"> | 96 | ····<div·class="footer"·role="contentinfo"> |
97 | ····©·Copyright·2013,·The·BiPy·Development·Team. | 97 | ····©·Copyright·2013,·The·BiPy·Development·Team. |
98 | ······Last·updated·on·Dec· | 98 | ······Last·updated·on·Dec·10,·2024. |
99 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. | 99 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. |
100 | ····</div> | 100 | ····</div> |
101 | ··</body> | 101 | ··</body> |
102 | </html> | 102 | </html> |
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53 | As·pyqi·matures·we'll·include·tutorials·covering·topics·such·as·how·to·define | 53 | As·pyqi·matures·we'll·include·tutorials·covering·topics·such·as·how·to·define |
54 | new·interface·types.·However,·given·the·early·state·of·development·that·we're | 54 | new·interface·types.·However,·given·the·early·state·of·development·that·we're |
55 | currently·in,·these·will·likely·change·a·lot,·so·we·recommend·that·if·you·are | 55 | currently·in,·these·will·likely·change·a·lot,·so·we·recommend·that·if·you·are |
56 | interested·in·developing·new·interface·types·now,·that·you·get·in·touch·(you | 56 | interested·in·developing·new·interface·types·now,·that·you·get·in·touch·(you |
57 | can·e-mail·_\x8g_\x8r_\x8e_\x8g_\x8c_\x8a_\x8p_\x8o_\x8r_\x8a_\x8s_\x8o_\x8@_\x8g_\x8m_\x8a_\x8i_\x8l_\x8._\x8c_\x8o_\x8m·for·now)·to·discuss·what·you'd·like·to·do, | 57 | can·e-mail·_\x8g_\x8r_\x8e_\x8g_\x8c_\x8a_\x8p_\x8o_\x8r_\x8a_\x8s_\x8o_\x8@_\x8g_\x8m_\x8a_\x8i_\x8l_\x8._\x8c_\x8o_\x8m·for·now)·to·discuss·what·you'd·like·to·do, |
58 | and·possibly·get·involved·with·development·of·pyqi. | 58 | and·possibly·get·involved·with·development·of·pyqi. |
59 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s | 59 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s |
60 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec· | 60 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec·10,·2024. |
61 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. | 61 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. |
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125 | ········<a·class="uplink"·href="../index.html">Contents</a> | 125 | ········<a·class="uplink"·href="../index.html">Contents</a> |
126 | ········</p> | 126 | ········</p> |
127 | ······</div> | 127 | ······</div> |
128 | ····<div·class="footer"·role="contentinfo"> | 128 | ····<div·class="footer"·role="contentinfo"> |
129 | ····©·Copyright·2013,·The·BiPy·Development·Team. | 129 | ····©·Copyright·2013,·The·BiPy·Development·Team. |
130 | ······Last·updated·on·Dec· | 130 | ······Last·updated·on·Dec·10,·2024. |
131 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. | 131 | ······Created·using·<a·href="https://www.sphinx-doc.org/">Sphinx</a>·8.1.3. |
132 | ····</div> | 132 | ····</div> |
133 | ··</body> | 133 | ··</body> |
134 | </html> | 134 | </html> |
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117 | nesting·in·the·library·code·directory. | 117 | nesting·in·the·library·code·directory. |
118 | Finally,·under·the·scripts·directory·there·is·a·single·executable,·biom,·which | 118 | Finally,·under·the·scripts·directory·there·is·a·single·executable,·biom,·which |
119 | is·the·OptparseInterface·command·driver.·This·is·a·simple·shell·script·that | 119 | is·the·OptparseInterface·command·driver.·This·is·a·simple·shell·script·that |
120 | allows·users·to·access·the·OptparseInterfaces·defined·in·the·biom-format | 120 | allows·users·to·access·the·OptparseInterfaces·defined·in·the·biom-format |
121 | project.·Defining·this·script·for·your·project·is·covered·in·_\x8D_\x8e_\x8f_\x8i_\x8n_\x8i_\x8n_\x8g_\x8·_\x8y_\x8o_\x8u_\x8r | 121 | project.·Defining·this·script·for·your·project·is·covered·in·_\x8D_\x8e_\x8f_\x8i_\x8n_\x8i_\x8n_\x8g_\x8·_\x8y_\x8o_\x8u_\x8r |
122 | _\x8c_\x8o_\x8m_\x8m_\x8a_\x8n_\x8d_\x8·_\x8d_\x8r_\x8i_\x8v_\x8e_\x8r. | 122 | _\x8c_\x8o_\x8m_\x8m_\x8a_\x8n_\x8d_\x8·_\x8d_\x8r_\x8i_\x8v_\x8e_\x8r. |
123 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s | 123 | _\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8s |
124 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec· | 124 | ©·Copyright·2013,·The·BiPy·Development·Team.·Last·updated·on·Dec·10,·2024. |
125 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. | 125 | Created·using·_\x8S_\x8p_\x8h_\x8i_\x8n_\x8x·8.1.3. |