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| 15 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-10-07·20:51:37.000000·./usr/share/doc/libjebl2-java/api/jebl/ | 15 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-10-07·20:51:37.000000·./usr/share/doc/libjebl2-java/api/jebl/ |
| 16 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-10-07·20:51:37.000000·./usr/share/doc/libjebl2-java/api/jebl/evolution/ | 16 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-10-07·20:51:37.000000·./usr/share/doc/libjebl2-java/api/jebl/evolution/ |
| 17 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-10-07·20:51:37.000000·./usr/share/doc/libjebl2-java/api/jebl/evolution/align/ | 17 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-10-07·20:51:37.000000·./usr/share/doc/libjebl2-java/api/jebl/evolution/align/ |
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| Offset 4236, 23 lines modified | Offset 4236, 23 lines modified | ||
| 4236 | <dd> </dd> | 4236 | <dd> </dd> |
| 4237 | <dt><a·href="jebl/evolution/io/ImportHelper.html#next()"·class="member-name-link">next()</a>·-·Method·in·class·jebl.evolution.io.<a·href="jebl/evolution/io/ImportHelper.html"·title="class·in·jebl.evolution.io">ImportHelper</a></dt> | 4237 | <dt><a·href="jebl/evolution/io/ImportHelper.html#next()"·class="member-name-link">next()</a>·-·Method·in·class·jebl.evolution.io.<a·href="jebl/evolution/io/ImportHelper.html"·title="class·in·jebl.evolution.io">ImportHelper</a></dt> |
| 4238 | <dd> </dd> | 4238 | <dd> </dd> |
| 4239 | <dt><a·href="jebl/evolution/align/Align.html#next(jebl.evolution.align.Traceback)"·class="member-name-link">next(Traceback)</a>·-·Method·in·class·jebl.evolution.align.<a·href="jebl/evolution/align/Align.html"·title="class·in·jebl.evolution.align">Align</a></dt> | 4239 | <dt><a·href="jebl/evolution/align/Align.html#next(jebl.evolution.align.Traceback)"·class="member-name-link">next(Traceback)</a>·-·Method·in·class·jebl.evolution.align.<a·href="jebl/evolution/align/Align.html"·title="class·in·jebl.evolution.align">Align</a></dt> |
| 4240 | <dd> | 4240 | <dd> |
| 4241 | <div·class="block">Get·the·next·state·in·the·traceback</div> | 4241 | <div·class="block">Get·the·next·state·in·the·traceback</div> |
| 4242 | </dd> | 4242 | </dd> |
| 4243 | <dt><a·href="jebl/evolution/align/NeedlemanWunschAffine.html#next(jebl.evolution.align.Traceback)"·class="member-name-link">next(Traceback)</a>·-·Method·in·class·jebl.evolution.align.<a·href="jebl/evolution/align/NeedlemanWunschAffine.html"·title="class·in·jebl.evolution.align">NeedlemanWunschAffine</a></dt> | 4243 | <dt><a·href="jebl/evolution/align/OldNeedlemanWunschAffine.html#next(jebl.evolution.align.Traceback)"·class="member-name-link">next(Traceback)</a>·-·Method·in·class·jebl.evolution.align.<a·href="jebl/evolution/align/OldNeedlemanWunschAffine.html"·title="class·in·jebl.evolution.align">OldNeedlemanWunschAffine</a></dt> |
| 4244 | <dd> | 4244 | <dd> |
| 4245 | <div·class="block">Get·the·next·state·in·the·traceback</div> | 4245 | <div·class="block">Get·the·next·state·in·the·traceback</div> |
| 4246 | </dd> | 4246 | </dd> |
| 4247 | <dt><a·href="jebl/evolution/align/NonOverlapMultipleLocalAffine.html#next(jebl.evolution.align.Traceback)"·class="member-name-link">next(Traceback)</a>·-·Method·in·class·jebl.evolution.align.<a·href="jebl/evolution/align/NonOverlapMultipleLocalAffine.html"·title="class·in·jebl.evolution.align">NonOverlapMultipleLocalAffine</a></dt> | 4247 | <dt><a·href="jebl/evolution/align/NonOverlapMultipleLocalAffine.html#next(jebl.evolution.align.Traceback)"·class="member-name-link">next(Traceback)</a>·-·Method·in·class·jebl.evolution.align.<a·href="jebl/evolution/align/NonOverlapMultipleLocalAffine.html"·title="class·in·jebl.evolution.align">NonOverlapMultipleLocalAffine</a></dt> |
| 4248 | <dd> | 4248 | <dd> |
| 4249 | <div·class="block">Get·the·next·state·in·the·traceback</div> | 4249 | <div·class="block">Get·the·next·state·in·the·traceback</div> |
| 4250 | </dd> | 4250 | </dd> |
| 4251 | <dt><a·href="jebl/evolution/align/ | 4251 | <dt><a·href="jebl/evolution/align/SmithWaterman.html#next(jebl.evolution.align.Traceback)"·class="member-name-link">next(Traceback)</a>·-·Method·in·class·jebl.evolution.align.<a·href="jebl/evolution/align/SmithWaterman.html"·title="class·in·jebl.evolution.align">SmithWaterman</a></dt> |
| 4252 | <dd> | 4252 | <dd> |
| 4253 | <div·class="block">Get·the·next·state·in·the·traceback</div> | 4253 | <div·class="block">Get·the·next·state·in·the·traceback</div> |
| 4254 | </dd> | 4254 | </dd> |
| 4255 | <dt><a·href="jebl/evolution/align/MaximalSegmentPair.html#next(jebl.evolution.align.Traceback)"·class="member-name-link">next(Traceback)</a>·-·Method·in·class·jebl.evolution.align.<a·href="jebl/evolution/align/MaximalSegmentPair.html"·title="class·in·jebl.evolution.align">MaximalSegmentPair</a></dt> | 4255 | <dt><a·href="jebl/evolution/align/MaximalSegmentPair.html#next(jebl.evolution.align.Traceback)"·class="member-name-link">next(Traceback)</a>·-·Method·in·class·jebl.evolution.align.<a·href="jebl/evolution/align/MaximalSegmentPair.html"·title="class·in·jebl.evolution.align">MaximalSegmentPair</a></dt> |
| 4256 | <dd> </dd> | 4256 | <dd> </dd> |
| 4257 | <dt><a·href="jebl/math/Random.html#nextBoolean()"·class="member-name-link">nextBoolean()</a>·-·Static·method·in·class·jebl.math.<a·href="jebl/math/Random.html"·title="class·in·jebl.math">Random</a></dt> | 4257 | <dt><a·href="jebl/math/Random.html#nextBoolean()"·class="member-name-link">nextBoolean()</a>·-·Static·method·in·class·jebl.math.<a·href="jebl/math/Random.html"·title="class·in·jebl.math">Random</a></dt> |
| 4258 | <dd> | 4258 | <dd> |
| Offset 3845, 20 lines modified | Offset 3845, 21 lines modified | ||
| 3845 | ··_\x8n_\x8e_\x8w_\x8T_\x8r_\x8a_\x8c_\x8e_\x8B_\x8a_\x8c_\x8k_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8)·-·Method·in·interface | 3845 | ··_\x8n_\x8e_\x8w_\x8T_\x8r_\x8a_\x8c_\x8e_\x8B_\x8a_\x8c_\x8k_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8)·-·Method·in·interface |
| 3846 | ··jebl.evolution.align._\x8T_\x8r_\x8a_\x8c_\x8e_\x8b_\x8a_\x8c_\x8k_\x8P_\x8l_\x8o_\x8t_\x8t_\x8e_\x8r | 3846 | ··jebl.evolution.align._\x8T_\x8r_\x8a_\x8c_\x8e_\x8b_\x8a_\x8c_\x8k_\x8P_\x8l_\x8o_\x8t_\x8t_\x8e_\x8r |
| 3847 | ······ | 3847 | ······ |
| 3848 | ··_\x8n_\x8e_\x8x_\x8t_\x8(_\x8)·-·Method·in·class·jebl.evolution.io._\x8I_\x8m_\x8p_\x8o_\x8r_\x8t_\x8H_\x8e_\x8l_\x8p_\x8e_\x8r | 3848 | ··_\x8n_\x8e_\x8x_\x8t_\x8(_\x8)·-·Method·in·class·jebl.evolution.io._\x8I_\x8m_\x8p_\x8o_\x8r_\x8t_\x8H_\x8e_\x8l_\x8p_\x8e_\x8r |
| 3849 | ······ | 3849 | ······ |
| 3850 | ··_\x8n_\x8e_\x8x_\x8t_\x8(_\x8T_\x8r_\x8a_\x8c_\x8e_\x8b_\x8a_\x8c_\x8k_\x8)·-·Method·in·class·jebl.evolution.align._\x8A_\x8l_\x8i_\x8g_\x8n | 3850 | ··_\x8n_\x8e_\x8x_\x8t_\x8(_\x8T_\x8r_\x8a_\x8c_\x8e_\x8b_\x8a_\x8c_\x8k_\x8)·-·Method·in·class·jebl.evolution.align._\x8A_\x8l_\x8i_\x8g_\x8n |
| 3851 | ······Get·the·next·state·in·the·traceback | 3851 | ······Get·the·next·state·in·the·traceback |
| 3852 | ··_\x8n_\x8e_\x8x_\x8t_\x8(_\x8T_\x8r_\x8a_\x8c_\x8e_\x8b_\x8a_\x8c_\x8k_\x8)·-·Method·in·class | 3852 | ··_\x8n_\x8e_\x8x_\x8t_\x8(_\x8T_\x8r_\x8a_\x8c_\x8e_\x8b_\x8a_\x8c_\x8k_\x8)·-·Method·in·class |
| 3853 | ··jebl.evolution.align._\x8O_\x8l_\x8d_\x8N_\x8e_\x8e_\x8d_\x8l_\x8e_\x8m_\x8a_\x8n_\x8W_\x8u_\x8n_\x8s_\x8c_\x8h_\x8A_\x8f_\x8f_\x8i_\x8n_\x8e | ||
| 3853 | ······Get·the·next·state·in·the·traceback | 3854 | ······Get·the·next·state·in·the·traceback |
| 3854 | ··_\x8n_\x8e_\x8x_\x8t_\x8(_\x8T_\x8r_\x8a_\x8c_\x8e_\x8b_\x8a_\x8c_\x8k_\x8)·-·Method·in·class | 3855 | ··_\x8n_\x8e_\x8x_\x8t_\x8(_\x8T_\x8r_\x8a_\x8c_\x8e_\x8b_\x8a_\x8c_\x8k_\x8)·-·Method·in·class |
| 3855 | ··jebl.evolution.align._\x8N_\x8o_\x8n_\x8O_\x8v_\x8e_\x8r_\x8l_\x8a_\x8p_\x8M_\x8u_\x8l_\x8t_\x8i_\x8p_\x8l_\x8e_\x8L_\x8o_\x8c_\x8a_\x8l_\x8A_\x8f_\x8f_\x8i_\x8n_\x8e | 3856 | ··jebl.evolution.align._\x8N_\x8o_\x8n_\x8O_\x8v_\x8e_\x8r_\x8l_\x8a_\x8p_\x8M_\x8u_\x8l_\x8t_\x8i_\x8p_\x8l_\x8e_\x8L_\x8o_\x8c_\x8a_\x8l_\x8A_\x8f_\x8f_\x8i_\x8n_\x8e |
| 3856 | ······Get·the·next·state·in·the·traceback | 3857 | ······Get·the·next·state·in·the·traceback |
| 3857 | ··_\x8n_\x8e_\x8x_\x8t_\x8(_\x8T_\x8r_\x8a_\x8c_\x8e_\x8b_\x8a_\x8c_\x8k_\x8)·-·Method·in·class·jebl.evolution.align._\x8 | 3858 | ··_\x8n_\x8e_\x8x_\x8t_\x8(_\x8T_\x8r_\x8a_\x8c_\x8e_\x8b_\x8a_\x8c_\x8k_\x8)·-·Method·in·class·jebl.evolution.align._\x8S_.m_.i_.t_.h_.W_.a_.t_.e_.r_.m_.a_.n |
| 3858 | ······Get·the·next·state·in·the·traceback | 3859 | ······Get·the·next·state·in·the·traceback |
| 3859 | ··_\x8n_\x8e_\x8x_\x8t_\x8(_\x8T_\x8r_\x8a_\x8c_\x8e_\x8b_\x8a_\x8c_\x8k_\x8)·-·Method·in·class·jebl.evolution.align._\x8M_\x8a_\x8x_\x8i_\x8m_\x8a_\x8l_\x8S_\x8e_\x8g_\x8m_\x8e_\x8n_\x8t_\x8P_\x8a_\x8i_\x8r | 3860 | ··_\x8n_\x8e_\x8x_\x8t_\x8(_\x8T_\x8r_\x8a_\x8c_\x8e_\x8b_\x8a_\x8c_\x8k_\x8)·-·Method·in·class·jebl.evolution.align._\x8M_\x8a_\x8x_\x8i_\x8m_\x8a_\x8l_\x8S_\x8e_\x8g_\x8m_\x8e_\x8n_\x8t_\x8P_\x8a_\x8i_\x8r |
| 3860 | ······ | 3861 | ······ |
| 3861 | ··_\x8n_\x8e_\x8x_\x8t_\x8B_\x8o_\x8o_\x8l_\x8e_\x8a_\x8n_\x8(_\x8)·-·Static·method·in·class·jebl.math._\x8R_\x8a_\x8n_\x8d_\x8o_\x8m | 3862 | ··_\x8n_\x8e_\x8x_\x8t_\x8B_\x8o_\x8o_\x8l_\x8e_\x8a_\x8n_\x8(_\x8)·-·Static·method·in·class·jebl.math._\x8R_\x8a_\x8n_\x8d_\x8o_\x8m |
| 3862 | ······Access·a·default·instance·of·this·class,·access·is·synchronized | 3863 | ······Access·a·default·instance·of·this·class,·access·is·synchronized |
| 3863 | ··_\x8n_\x8e_\x8x_\x8t_\x8B_\x8y_\x8t_\x8e_\x8(_\x8)·-·Static·method·in·class·jebl.math._\x8R_\x8a_\x8n_\x8d_\x8o_\x8m | 3864 | ··_\x8n_\x8e_\x8x_\x8t_\x8B_\x8y_\x8t_\x8e_\x8(_\x8)·-·Static·method·in·class·jebl.math._\x8R_\x8a_\x8n_\x8d_\x8o_\x8m |
| 3864 | ······Access·a·default·instance·of·this·class,·access·is·synchronized | 3865 | ······Access·a·default·instance·of·this·class,·access·is·synchronized |
| Offset 6195, 25 lines modified | Offset 6195, 25 lines modified | ||
| 6195 | },·{ | 6195 | },·{ |
| 6196 | ····"p":·"jebl.evolution.align", | 6196 | ····"p":·"jebl.evolution.align", |
| 6197 | ····"c":·"Align", | 6197 | ····"c":·"Align", |
| 6198 | ····"l":·"next(Traceback)", | 6198 | ····"l":·"next(Traceback)", |
| 6199 | ····"u":·"next(jebl.evolution.align.Traceback)" | 6199 | ····"u":·"next(jebl.evolution.align.Traceback)" |
| 6200 | },·{ | 6200 | },·{ |
| 6201 | ····"p":·"jebl.evolution.align", | 6201 | ····"p":·"jebl.evolution.align", |
| 6202 | ····"c":·"NeedlemanWunschAffine", | 6202 | ····"c":·"OldNeedlemanWunschAffine", |
| 6203 | ····"l":·"next(Traceback)", | 6203 | ····"l":·"next(Traceback)", |
| 6204 | ····"u":·"next(jebl.evolution.align.Traceback)" | 6204 | ····"u":·"next(jebl.evolution.align.Traceback)" |
| 6205 | },·{ | 6205 | },·{ |
| 6206 | ····"p":·"jebl.evolution.align", | 6206 | ····"p":·"jebl.evolution.align", |
| 6207 | ····"c":·"NonOverlapMultipleLocalAffine", | 6207 | ····"c":·"NonOverlapMultipleLocalAffine", |
| 6208 | ····"l":·"next(Traceback)", | 6208 | ····"l":·"next(Traceback)", |
| 6209 | ····"u":·"next(jebl.evolution.align.Traceback)" | 6209 | ····"u":·"next(jebl.evolution.align.Traceback)" |
| 6210 | },·{ | 6210 | },·{ |
| 6211 | ····"p":·"jebl.evolution.align", | 6211 | ····"p":·"jebl.evolution.align", |
| 6212 | ····"c":·" | 6212 | ····"c":·"SmithWaterman", |
| 6213 | ····"l":·"next(Traceback)", | 6213 | ····"l":·"next(Traceback)", |
| 6214 | ····"u":·"next(jebl.evolution.align.Traceback)" | 6214 | ····"u":·"next(jebl.evolution.align.Traceback)" |
| 6215 | },·{ | 6215 | },·{ |
| 6216 | ····"p":·"jebl.evolution.align", | 6216 | ····"p":·"jebl.evolution.align", |
| 6217 | ····"c":·"MaximalSegmentPair", | 6217 | ····"c":·"MaximalSegmentPair", |
| 6218 | ····"l":·"next(Traceback)", | 6218 | ····"l":·"next(Traceback)", |
| 6219 | ····"u":·"next(jebl.evolution.align.Traceback)" | 6219 | ····"u":·"next(jebl.evolution.align.Traceback)" |