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/srv/reproducible-results/rbuild-debian/r-b-build.qvNubhKi/b1/salmon_1.10.2+ds1-1_arm64.changes vs.
/srv/reproducible-results/rbuild-debian/r-b-build.qvNubhKi/b2/salmon_1.10.2+ds1-1_arm64.changes
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1 ·1e33223da09c6dcaa815134ab3d6c30f·39605316·debug·optional·salmon-dbgsym_1.10.2+ds1-1_arm64.deb1 ·1e33223da09c6dcaa815134ab3d6c30f·39605316·debug·optional·salmon-dbgsym_1.10.2+ds1-1_arm64.deb
2 ·b038d5734fcd602683995c24c8797b38·3055132·science·optional·salmon_1.10.2+ds1-1_arm64.deb2 ·4aeb9c050035e6f5bf61a66a2ed02744·3055148·science·optional·salmon_1.10.2+ds1-1_arm64.deb
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salmon_1.10.2+ds1-1_arm64.deb
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1 -rw-r--r--···0········0········0········4·2023-08-16·11:09:23.000000·debian-binary1 -rw-r--r--···0········0········0········4·2023-08-16·11:09:23.000000·debian-binary
2 -rw-r--r--···0········0········0·····2468·2023-08-16·11:09:23.000000·control.tar.xz2 -rw-r--r--···0········0········0·····2468·2023-08-16·11:09:23.000000·control.tar.xz
3 -rw-r--r--···0········0········0··3052472·2023-08-16·11:09:23.000000·data.tar.xz3 -rw-r--r--···0········0········0··3052488·2023-08-16·11:09:23.000000·data.tar.xz
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control.tar.xz
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control.tar
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./md5sums
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./md5sums
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data.tar.xz
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data.tar
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file list
    
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58 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/man/man1/58 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/man/man1/
59 -rw-r--r--···0·root·········(0)·root·········(0)·····1374·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon-index.1.gz59 -rw-r--r--···0·root·········(0)·root·········(0)·····1374·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon-index.1.gz
60 -rw-r--r--···0·root·········(0)·root·········(0)······530·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon-quant.1.gz60 -rw-r--r--···0·root·········(0)·root·········(0)······530·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon-quant.1.gz
61 -rw-r--r--···0·root·········(0)·root·········(0)······325·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon-swim.1.gz61 -rw-r--r--···0·root·········(0)·root·········(0)······325·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon-swim.1.gz
62 -rw-r--r--···0·root·········(0)·root·········(0)······433·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon.1.gz62 -rw-r--r--···0·root·········(0)·root·········(0)······433·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon.1.gz
63 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/salmon/63 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/salmon/
64 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/salmon/build-test-logs/64 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/salmon/build-test-logs/
65 -rw-r--r--···0·root·········(0)·root·········(0)····90924·2023-08-16·11:09:23.000000·./usr/share/salmon/build-test-logs/LastTest.log65 -rw-r--r--···0·root·········(0)·root·········(0)····90929·2023-08-16·11:09:23.000000·./usr/share/salmon/build-test-logs/LastTest.log
66 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/doctools.js·->·../../../../javascript/sphinxdoc/1.0/doctools.js66 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/doctools.js·->·../../../../javascript/sphinxdoc/1.0/doctools.js
67 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/language_data.js·->·../../../../javascript/sphinxdoc/1.0/language_data.js67 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/language_data.js·->·../../../../javascript/sphinxdoc/1.0/language_data.js
68 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/searchtools.js·->·../../../../javascript/sphinxdoc/1.0/searchtools.js68 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/searchtools.js·->·../../../../javascript/sphinxdoc/1.0/searchtools.js
69 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/sphinx_highlight.js·->·../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js69 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/sphinx_highlight.js·->·../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js
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./usr/share/salmon/build-test-logs/LastTest.log
    
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1 Start·testing:·May·18·13:36·-121 Start·testing:·Apr·16·09:18·+14
2 ----------------------------------------------------------2 ----------------------------------------------------------
3 1/2·Testing:·unit_tests3 1/2·Testing:·unit_tests
4 1/2·Test:·unit_tests4 1/2·Test:·unit_tests
5 Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/UnitTests.cmake"5 Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/UnitTests.cmake"
6 Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-aarch64-linux-gnu/src6 Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-aarch64-linux-gnu/src
7 "unit_tests"·start·time:·May·18·13:36·-127 "unit_tests"·start·time:·Apr·16·09:18·+14
8 Output:8 Output:
9 ----------------------------------------------------------9 ----------------------------------------------------------
10 --·For·unit·tests,·will·set·working·directory·to·/build/reproducible-path/salmon-1.10.2+ds1/tests10 --·For·unit·tests,·will·set·working·directory·to·/build/reproducible-path/salmon-1.10.2+ds1/tests
11 ===============================================================================11 ===============================================================================
12 All·tests·passed·(2009403·assertions·in·4·test·cases)12 All·tests·passed·(2015079·assertions·in·4·test·cases)
  
13 <end·of·output>13 <end·of·output>
14 Test·time·=···0.24·sec14 Test·time·=···0.47·sec
15 ----------------------------------------------------------15 ----------------------------------------------------------
16 Test·Passed.16 Test·Passed.
17 "unit_tests"·end·time:·May·18·13:36·-1217 "unit_tests"·end·time:·Apr·16·09:18·+14
18 "unit_tests"·time·elapsed:·00:00:0018 "unit_tests"·time·elapsed:·00:00:00
19 ----------------------------------------------------------19 ----------------------------------------------------------
  
20 2/2·Testing:·salmon_read_test_quasi20 2/2·Testing:·salmon_read_test_quasi
21 2/2·Test:·salmon_read_test_quasi21 2/2·Test:·salmon_read_test_quasi
22 Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/TestSalmonQuasi.cmake"22 Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/TestSalmonQuasi.cmake"
23 Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-aarch64-linux-gnu/src23 Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-aarch64-linux-gnu/src
24 "salmon_read_test_quasi"·start·time:·May·18·13:36·-1224 "salmon_read_test_quasi"·start·time:·Apr·16·09:18·+14
25 Output:25 Output:
26 ----------------------------------------------------------26 ----------------------------------------------------------
27 sample_data/27 sample_data/
28 sample_data/reads_2.fastq28 sample_data/reads_2.fastq
29 sample_data/sample_alignments.bam29 sample_data/sample_alignments.bam
30 sample_data/transcripts.fasta30 sample_data/transcripts.fasta
31 sample_data/reads_1.fastq31 sample_data/reads_1.fastq
32 index·["sample_salmon_quasi_index"]·did·not·previously·exist··.·.·.·creating·it32 index·["sample_salmon_quasi_index"]·did·not·previously·exist··.·.·.·creating·it
33 [2025-05-18·13:36:01.200]·[jLog]·[warning]·The·salmon·index·is·being·built·without·any·decoy·sequences.··It·is·recommended·that·decoy·sequence·(either·computed·auxiliary·decoy·sequence·or·the·genome·of·the·organism)·be·provided·during·indexing.·Further·details·can·be·found·at·https://salmon.readthedocs.io/en/latest/salmon.html#preparing-transcriptome-indices-mapping-based-mode.33 [2024-04-16·09:18:32.140]·[jLog]·[warning]·The·salmon·index·is·being·built·without·any·decoy·sequences.··It·is·recommended·that·decoy·sequence·(either·computed·auxiliary·decoy·sequence·or·the·genome·of·the·organism)·be·provided·during·indexing.·Further·details·can·be·found·at·https://salmon.readthedocs.io/en/latest/salmon.html#preparing-transcriptome-indices-mapping-based-mode.
34 [2025-05-18·13:36:01.200]·[jLog]·[info]·building·index34 [2024-04-16·09:18:32.140]·[jLog]·[info]·building·index
35 out·:·sample_salmon_quasi_index35 out·:·sample_salmon_quasi_index
36 [2025-05-18·13:36:01.200]·[puff::index::jointLog]·[info]·Running·fixFasta36 [2024-04-16·09:18:32.140]·[puff::index::jointLog]·[info]·Running·fixFasta
  
37 [Step·1·of·4]·:·counting·k-mers37 [Step·1·of·4]·:·counting·k-mers
  
38 [2025-05-18·13:36:01.212]·[puff::index::jointLog]·[info]·Replaced·0·non-ATCG·nucleotides38 [2024-04-16·09:18:32.144]·[puff::index::jointLog]·[info]·Replaced·0·non-ATCG·nucleotides
39 [2025-05-18·13:36:01.212]·[puff::index::jointLog]·[info]·Clipped·poly-A·tails·from·0·transcripts39 [2024-04-16·09:18:32.144]·[puff::index::jointLog]·[info]·Clipped·poly-A·tails·from·0·transcripts
40 wrote·15·cleaned·references40 wrote·15·cleaned·references
41 [2025-05-18·13:36:01.212]·[puff::index::jointLog]·[info]·Filter·size·not·provided;·estimating·from·number·of·distinct·k-mers41 [2024-04-16·09:18:32.144]·[puff::index::jointLog]·[info]·Filter·size·not·provided;·estimating·from·number·of·distinct·k-mers
42 [2025-05-18·13:36:01.213]·[puff::index::jointLog]·[info]·ntHll·estimated·54811·distinct·k-mers,·setting·filter·size·to·2^2042 [2024-04-16·09:18:32.145]·[puff::index::jointLog]·[info]·ntHll·estimated·54811·distinct·k-mers,·setting·filter·size·to·2^20
43 Threads·=·243 Threads·=·2
44 Vertex·length·=·3144 Vertex·length·=·31
45 Hash·functions·=·545 Hash·functions·=·5
46 Filter·size·=·104857646 Filter·size·=·1048576
47 Capacity·=·247 Capacity·=·2
48 Files:·48 Files:·
49 sample_salmon_quasi_index/ref_k31_fixed.fa49 sample_salmon_quasi_index/ref_k31_fixed.fa
50 --------------------------------------------------------------------------------50 --------------------------------------------------------------------------------
51 Round·0,·0:104857651 Round·0,·0:1048576
52 Pass»   Filling»    Filtering52 Pass»   Filling»    Filtering
53 1»      0»     0»    53 1»      0»     0»    
54 2»      0»     054 2»      0»     0
55 True·junctions·count·=·1455 True·junctions·count·=·14
56 False·junctions·count·=·1856 False·junctions·count·=·19
57 Hash·table·size·=·3257 Hash·table·size·=·33
58 Candidate·marks·count·=·5558 Candidate·marks·count·=·58
59 --------------------------------------------------------------------------------59 --------------------------------------------------------------------------------
60 Reallocating·bifurcations·time:·060 Reallocating·bifurcations·time:·0
61 True·marks·count:·5161 True·marks·count:·51
62 Edges·construction·time:·062 Edges·construction·time:·0
63 --------------------------------------------------------------------------------63 --------------------------------------------------------------------------------
64 Distinct·junctions·=·1464 Distinct·junctions·=·14
  
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