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/srv/reproducible-results/rbuild-debian/tmp.MdMprvAHEb/b1/r-cran-cgdsr_1.3.0-2_arm64.changes vs.
/srv/reproducible-results/rbuild-debian/tmp.MdMprvAHEb/b2/r-cran-cgdsr_1.3.0-2_arm64.changes
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1 ·a6ca95cacb24efcfbbeaebc8840b45d5·271992·gnu-r·optional·r-cran-cgdsr_1.3.0-2_all.deb1 ·8baab13bb2ec3c3256829adf85c7b98c·272024·gnu-r·optional·r-cran-cgdsr_1.3.0-2_all.deb
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r-cran-cgdsr_1.3.0-2_all.deb
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1 -rw-r--r--···0········0········0········4·2020-10-12·07:12:34.000000·debian-binary1 -rw-r--r--···0········0········0········4·2020-10-12·07:12:34.000000·debian-binary
2 -rw-r--r--···0········0········0·····1512·2020-10-12·07:12:34.000000·control.tar.xz2 -rw-r--r--···0········0········0·····1512·2020-10-12·07:12:34.000000·control.tar.xz
3 -rw-r--r--···0········0········0···270288·2020-10-12·07:12:34.000000·data.tar.xz3 -rw-r--r--···0········0········0···270320·2020-10-12·07:12:34.000000·data.tar.xz
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control.tar.xz
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control.tar
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./md5sums
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./md5sums
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data.tar.xz
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data.tar
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file list
    
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13 -rw-r--r--···0·root·········(0)·root·········(0)······441·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/Meta/links.rds13 -rw-r--r--···0·root·········(0)·root·········(0)······441·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/Meta/links.rds
14 -rw-r--r--···0·root·········(0)·root·········(0)······490·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/Meta/nsInfo.rds14 -rw-r--r--···0·root·········(0)·root·········(0)······490·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/Meta/nsInfo.rds
15 -rw-r--r--···0·root·········(0)·root·········(0)······963·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/Meta/package.rds15 -rw-r--r--···0·root·········(0)·root·········(0)······963·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/Meta/package.rds
16 -rw-r--r--···0·root·········(0)·root·········(0)······217·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/Meta/vignette.rds16 -rw-r--r--···0·root·········(0)·root·········(0)······217·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/Meta/vignette.rds
17 -rw-r--r--···0·root·········(0)·root·········(0)······907·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/NAMESPACE17 -rw-r--r--···0·root·········(0)·root·········(0)······907·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/NAMESPACE
18 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/R/18 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/R/
19 -rw-r--r--···0·root·········(0)·root·········(0)·····1058·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/R/cgdsr19 -rw-r--r--···0·root·········(0)·root·········(0)·····1058·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/R/cgdsr
20 -rw-r--r--···0·root·········(0)·root·········(0)····29802·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/R/cgdsr.rdb20 -rw-r--r--···0·root·········(0)·root·········(0)····29804·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/R/cgdsr.rdb
21 -rw-r--r--···0·root·········(0)·root·········(0)······591·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/R/cgdsr.rdx21 -rw-r--r--···0·root·········(0)·root·········(0)······592·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/R/cgdsr.rdx
22 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/doc/22 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/doc/
23 -rw-r--r--···0·root·········(0)·root·········(0)·····4161·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/doc/cgdsr.R23 -rw-r--r--···0·root·········(0)·root·········(0)·····4161·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/doc/cgdsr.R
24 -rw-r--r--···0·root·········(0)·root·········(0)····11226·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/doc/cgdsr.Rnw24 -rw-r--r--···0·root·········(0)·root·········(0)····11226·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/doc/cgdsr.Rnw
25 -rw-r--r--···0·root·········(0)·root·········(0)···205906·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/doc/cgdsr.pdf25 -rw-r--r--···0·root·········(0)·root·········(0)···205906·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/doc/cgdsr.pdf
26 -rw-r--r--···0·root·········(0)·root·········(0)·····1322·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/doc/index.html26 -rw-r--r--···0·root·········(0)·root·········(0)·····1322·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/doc/index.html
27 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/help/27 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/help/
28 -rw-r--r--···0·root·········(0)·root·········(0)·····1269·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/help/AnIndex28 -rw-r--r--···0·root·········(0)·root·········(0)·····1269·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/help/AnIndex
29 -rw-r--r--···0·root·········(0)·root·········(0)······365·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/help/aliases.rds29 -rw-r--r--···0·root·········(0)·root·········(0)······365·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/help/aliases.rds
30 -rw-r--r--···0·root·········(0)·root·········(0)····33471·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/help/cgdsr.rdb30 -rw-r--r--···0·root·········(0)·root·········(0)····33533·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/help/cgdsr.rdb
31 -rw-r--r--···0·root·········(0)·root·········(0)······495·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/help/cgdsr.rdx31 -rw-r--r--···0·root·········(0)·root·········(0)······496·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/help/cgdsr.rdx
32 -rw-r--r--···0·root·········(0)·root·········(0)······274·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/help/paths.rds32 -rw-r--r--···0·root·········(0)·root·········(0)······276·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/help/paths.rds
33 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/html/33 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/html/
34 -rw-r--r--···0·root·········(0)·root·········(0)·····6529·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/html/00Index.html34 -rw-r--r--···0·root·········(0)·root·········(0)·····6529·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/html/00Index.html
35 -rw-r--r--···0·root·········(0)·root·········(0)·····1335·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/html/R.css35 -rw-r--r--···0·root·········(0)·root·········(0)·····1335·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/html/R.css
36 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/tests/36 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/tests/
37 -rw-r--r--···0·root·········(0)·root·········(0)·····2904·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/tests/test_cgdsr.R37 -rw-r--r--···0·root·········(0)·root·········(0)·····2904·2020-10-12·07:12:34.000000·./usr/lib/R/site-library/cgdsr/tests/test_cgdsr.R
38 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/share/38 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/share/
39 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/share/doc/39 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-10-12·07:12:34.000000·./usr/share/doc/
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./usr/lib/R/site-library/cgdsr/R/cgdsr.rdb
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Rscript --vanilla - {}
    
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7 ····"imports"·=·"····R.oo·=·c(setConstructorS3·=·"setConstructorS3",·extend·=·"extend",·"7 ····"imports"·=·"····R.oo·=·c(setConstructorS3·=·"setConstructorS3",·extend·=·"extend",·"
8 ····"imports"·=·"····Object·=·"Object"),·graphics·=·c(axis·=·"axis",·barplot·=·"barplot",·"8 ····"imports"·=·"····Object·=·"Object"),·graphics·=·c(axis·=·"axis",·barplot·=·"barplot",·"
9 ····"imports"·=·"····box·=·"box",·boxplot·=·"boxplot",·hist·=·"hist",·legend·=·"legend",·"9 ····"imports"·=·"····box·=·"box",·boxplot·=·"boxplot",·hist·=·"hist",·legend·=·"legend",·"
10 ····"imports"·=·"····plot·=·"plot",·plot.new·=·"plot.new",·points·=·"points",·"10 ····"imports"·=·"····plot·=·"plot",·plot.new·=·"plot.new",·points·=·"points",·"
11 ····"imports"·=·"····stripchart·=·"stripchart",·text·=·"text"),·stats·=·c(cor.test·=·"cor.test"),·"11 ····"imports"·=·"····stripchart·=·"stripchart",·text·=·"text"),·stats·=·c(cor.test·=·"cor.test"),·"
12 ····"imports"·=·"····utils·=·c(read.table·=·"read.table"))"12 ····"imports"·=·"····utils·=·c(read.table·=·"read.table"))"
13 ····"lazydata"·=·"<environment>"13 ····"lazydata"·=·"<environment>"
14 ····"path"·=·""/build/1st/r-cran-cgdsr-1.3.0/debian/r-cran-cgdsr/usr/lib/R/site-library/cgdsr""14 ····"path"·=·""/build/2/r-cran-cgdsr-1.3.0/2nd/debian/r-cran-cgdsr/usr/lib/R/site-library/cgdsr""
15 ····"spec"·=·"c(name·=·"cgdsr",·version·=·"1.3.0")"15 ····"spec"·=·"c(name·=·"cgdsr",·version·=·"1.3.0")"
16 }16 }
  
17 .__S3MethodsTable__.·(environment)·=·17 .__S3MethodsTable__.·(environment)·=·
18 {18 {
19 }19 }
  
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./usr/lib/R/site-library/cgdsr/R/cgdsr.rdx
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cgdsr.rdx-content
    
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000004a0:·01fe·0000·0402·0000·01ff·0000·0010·0000··................000004a0:·01fe·0000·0402·0000·01ff·0000·0010·0000··................
000004b0:·0006·0004·0009·0000·0006·656e·763a·3a31··..........env::1000004b0:·0006·0004·0009·0000·0006·656e·763a·3a31··..........env::1
000004c0:·0004·0009·0000·0006·656e·763a·3a32·0004··........env::2..000004c0:·0004·0009·0000·0006·656e·763a·3a32·0004··........env::2..
000004d0:·0009·0000·0006·656e·763a·3a33·0004·0009··......env::3....000004d0:·0009·0000·0006·656e·763a·3a33·0004·0009··......env::3....
000004e0:·0000·0006·656e·763a·3a34·0004·0009·0000··....env::4......000004e0:·0000·0006·656e·763a·3a34·0004·0009·0000··....env::4......
000004f0:·0006·656e·763a·3a35·0004·0009·0000·0006··..env::5........000004f0:·0006·656e·763a·3a35·0004·0009·0000·0006··..env::5........
00000500:·656e·763a·3a36·0000·00fe·0000·000a·0000··env::6..........00000500:·656e·763a·3a36·0000·00fe·0000·000a·0000··env::6..........
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./usr/lib/R/site-library/cgdsr/help/cgdsr.rdb
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Rscript --vanilla - {}
    
Offset 35, 15 lines modifiedOffset 35, 15 lines modified
35 ············structure("getProfileData",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link")),·Rd_tag·=·"\\code"),·35 ············structure("getProfileData",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\link")),·Rd_tag·=·"\\code"),·
36 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\seealso"),·36 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\seealso"),·
37 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Create·CGDS·object\n",·Rd_tag·=·"RCODE"),·37 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Create·CGDS·object\n",·Rd_tag·=·"RCODE"),·
38 ········structure("mycgds·=·CGDS(\"http://www.cbioportal.org/\")\n",·Rd_tag·=·"RCODE"),·38 ········structure("mycgds·=·CGDS(\"http://www.cbioportal.org/\")\n",·Rd_tag·=·"RCODE"),·
39 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Test·the·CGDS·endpoint·URL·using·a·few·simple·API·tests\n",·Rd_tag·=·"RCODE"),·39 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Test·the·CGDS·endpoint·URL·using·a·few·simple·API·tests\n",·Rd_tag·=·"RCODE"),·
40 ········structure("test(mycgds)·\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE"),·40 ········structure("test(mycgds)·\n",·Rd_tag·=·"RCODE"),·structure("\n",·Rd_tag·=·"RCODE"),·
41 ········structure("#·Get·list·of·cancer·studies·at·server\n",·Rd_tag·=·"RCODE"),·41 ········structure("#·Get·list·of·cancer·studies·at·server\n",·Rd_tag·=·"RCODE"),·
42 ········structure("getCancerStudies(mycgds)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-cgdsr-1.3.0/man/cgdsr-CGDS.Rd",·class·=·"Rd",·meta·=·list(42 ········structure("getCancerStudies(mycgds)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-cgdsr-1.3.0/2nd/man/cgdsr-CGDS.Rd",·class·=·"Rd",·meta·=·list(
43 ····docType·=·character(0)),·prepared·=·3L)43 ····docType·=·character(0)),·prepared·=·3L)
  
44 cgdsr-getCancerStudies·(list)·=·structure(list(structure(list(structure("Get·available·cancer·studies·available·in·CGDS",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·44 cgdsr-getCancerStudies·(list)·=·structure(list(structure(list(structure("Get·available·cancer·studies·available·in·CGDS",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
45 ····structure(list(structure("cgdsr-getCancerStudies",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·45 ····structure(list(structure("cgdsr-getCancerStudies",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
46 ····structure(list(structure("cgdsr-getCancerStudies",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·46 ····structure(list(structure("cgdsr-getCancerStudies",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
47 ····structure(list(structure("getCancerStudies",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·47 ····structure(list(structure("getCancerStudies",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
48 ····structure(list(structure("getCancerStudies.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·48 ····structure(list(structure("getCancerStudies.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
Offset 87, 15 lines modifiedOffset 87, 15 lines modified
87 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\seealso"),·87 ········structure("\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\seealso"),·
88 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Create·CGDS·object\n",·Rd_tag·=·"RCODE"),·88 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Create·CGDS·object\n",·Rd_tag·=·"RCODE"),·
89 ········structure("mycgds·=·CGDS(\"http://www.cbioportal.org/\")\n",·Rd_tag·=·"RCODE"),·89 ········structure("mycgds·=·CGDS(\"http://www.cbioportal.org/\")\n",·Rd_tag·=·"RCODE"),·
90 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("getCancerStudies(mycgds)\n",·Rd_tag·=·"RCODE"),·90 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("getCancerStudies(mycgds)\n",·Rd_tag·=·"RCODE"),·
91 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·case·lists·(collection·of·samples)·for·a·given·cancer·study\n",·Rd_tag·=·"RCODE"),·91 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·case·lists·(collection·of·samples)·for·a·given·cancer·study\n",·Rd_tag·=·"RCODE"),·
92 ········structure("mycancerstudy·=·getCancerStudies(mycgds)[2,1]\n",·Rd_tag·=·"RCODE"),·92 ········structure("mycancerstudy·=·getCancerStudies(mycgds)[2,1]\n",·Rd_tag·=·"RCODE"),·
93 ········structure("mycaselist·=·getCaseLists(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·93 ········structure("mycaselist·=·getCaseLists(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·
94 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-cgdsr-1.3.0/man/cgdsr-getCancerStudies.Rd",·class·=·"Rd",·meta·=·list(94 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-cgdsr-1.3.0/2nd/man/cgdsr-getCancerStudies.Rd",·class·=·"Rd",·meta·=·list(
95 ····docType·=·character(0)),·prepared·=·3L)95 ····docType·=·character(0)),·prepared·=·3L)
  
96 cgdsr-getCaseLists·(list)·=·structure(list(structure(list(structure("Get·available·case·lists·for·a·specific·cancer·study\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·96 cgdsr-getCaseLists·(list)·=·structure(list(structure(list(structure("Get·available·case·lists·for·a·specific·cancer·study\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
97 ····structure(list(structure("cgdsr-getCaseLists",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·97 ····structure(list(structure("cgdsr-getCaseLists",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
98 ····structure(list(structure("cgdsr-getCaseLists",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·98 ····structure(list(structure("cgdsr-getCaseLists",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
99 ····structure(list(structure("getCaseLists",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·99 ····structure(list(structure("getCaseLists",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
100 ····structure(list(structure("getCaseLists.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·100 ····structure(list(structure("getCaseLists.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
Offset 161, 15 lines modifiedOffset 161, 15 lines modified
161 ········structure("getCancerStudies(mycgds)\n",·Rd_tag·=·"RCODE"),·161 ········structure("getCancerStudies(mycgds)\n",·Rd_tag·=·"RCODE"),·
162 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·case·lists·(collection·of·samples)·for·a·given·cancer·study··\n",·Rd_tag·=·"RCODE"),·162 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·case·lists·(collection·of·samples)·for·a·given·cancer·study··\n",·Rd_tag·=·"RCODE"),·
163 ········structure("mycancerstudy·=·getCancerStudies(mycgds)[2,1]\n",·Rd_tag·=·"RCODE"),·163 ········structure("mycancerstudy·=·getCancerStudies(mycgds)[2,1]\n",·Rd_tag·=·"RCODE"),·
164 ········structure("mycaselist·=·getCaseLists(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·164 ········structure("mycaselist·=·getCaseLists(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·
165 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·genetic·profiles\n",·Rd_tag·=·"RCODE"),·165 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·genetic·profiles\n",·Rd_tag·=·"RCODE"),·
166 ········structure("mygeneticprofile·=·getGeneticProfiles(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·166 ········structure("mygeneticprofile·=·getGeneticProfiles(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·
167 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·data·slices·for·a·specified·list·of·genes,·genetic·profile·and·case·list\n",·Rd_tag·=·"RCODE"),·167 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·data·slices·for·a·specified·list·of·genes,·genetic·profile·and·case·list\n",·Rd_tag·=·"RCODE"),·
168 ········structure("getProfileData(mycgds,c('BRCA1','BRCA2'),mygeneticprofile,mycaselist)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-cgdsr-1.3.0/man/cgdsr-getCaseLists.Rd",·class·=·"Rd",·meta·=·list(168 ········structure("getProfileData(mycgds,c('BRCA1','BRCA2'),mygeneticprofile,mycaselist)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-cgdsr-1.3.0/2nd/man/cgdsr-getCaseLists.Rd",·class·=·"Rd",·meta·=·list(
169 ····docType·=·character(0)),·prepared·=·3L)169 ····docType·=·character(0)),·prepared·=·3L)
  
170 cgdsr-getClinicalData·(list)·=·structure(list(structure(list(structure("Get·clinical·data·for·cancer·study",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·170 cgdsr-getClinicalData·(list)·=·structure(list(structure(list(structure("Get·clinical·data·for·cancer·study",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
171 ····structure(list(structure("cgdsr-getClinicalData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·171 ····structure(list(structure("cgdsr-getClinicalData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
172 ····structure(list(structure("cgdsr-getClinicalData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·172 ····structure(list(structure("cgdsr-getClinicalData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
173 ····structure(list(structure("getClinicalData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·173 ····structure(list(structure("getClinicalData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
174 ····structure(list(structure("getClinicalData.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·174 ····structure(list(structure("getClinicalData.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
Offset 228, 15 lines modifiedOffset 228, 15 lines modified
228 ········structure("mycgds·=·CGDS(\"http://www.cbioportal.org/\")\n",·Rd_tag·=·"RCODE"),·228 ········structure("mycgds·=·CGDS(\"http://www.cbioportal.org/\")\n",·Rd_tag·=·"RCODE"),·
229 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("getCancerStudies(mycgds)\n",·Rd_tag·=·"RCODE"),·229 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("getCancerStudies(mycgds)\n",·Rd_tag·=·"RCODE"),·
230 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·case·lists·(collection·of·samples)·for·a·given·cancer·study·\n",·Rd_tag·=·"RCODE"),·230 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·case·lists·(collection·of·samples)·for·a·given·cancer·study·\n",·Rd_tag·=·"RCODE"),·
231 ········structure("mycancerstudy·=·getCancerStudies(mycgds)[2,1]\n",·Rd_tag·=·"RCODE"),·231 ········structure("mycancerstudy·=·getCancerStudies(mycgds)[2,1]\n",·Rd_tag·=·"RCODE"),·
232 ········structure("mycaselist·=·getCaseLists(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·232 ········structure("mycaselist·=·getCaseLists(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·
233 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·clinical·data·for·caselist\n",·Rd_tag·=·"RCODE"),·233 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·clinical·data·for·caselist\n",·Rd_tag·=·"RCODE"),·
234 ········structure("getClinicalData(mycgds,mycaselist)\n",·Rd_tag·=·"RCODE"),·234 ········structure("getClinicalData(mycgds,mycaselist)\n",·Rd_tag·=·"RCODE"),·
235 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-cgdsr-1.3.0/man/cgdsr-getClinicalData.Rd",·class·=·"Rd",·meta·=·list(235 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-cgdsr-1.3.0/2nd/man/cgdsr-getClinicalData.Rd",·class·=·"Rd",·meta·=·list(
236 ····docType·=·character(0)),·prepared·=·3L)236 ····docType·=·character(0)),·prepared·=·3L)
  
237 cgdsr-getGeneticProfiles·(list)·=·structure(list(structure(list(structure("Get·available·genetic·data·profiles·for·a·specific·cancer·study",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·237 cgdsr-getGeneticProfiles·(list)·=·structure(list(structure(list(structure("Get·available·genetic·data·profiles·for·a·specific·cancer·study",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
238 ····structure(list(structure("cgdsr-getGeneticProfiles",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·238 ····structure(list(structure("cgdsr-getGeneticProfiles",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
239 ····structure(list(structure("cgdsr-getGeneticProfiles",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·239 ····structure(list(structure("cgdsr-getGeneticProfiles",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
240 ····structure(list(structure("getGeneticProfiles",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·240 ····structure(list(structure("getGeneticProfiles",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
241 ····structure(list(structure("getGeneticProfiles.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·241 ····structure(list(structure("getGeneticProfiles.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
Offset 302, 15 lines modifiedOffset 302, 15 lines modified
302 ········structure("getCancerStudies(mycgds)\n",·Rd_tag·=·"RCODE"),·302 ········structure("getCancerStudies(mycgds)\n",·Rd_tag·=·"RCODE"),·
303 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·case·lists·(collection·of·samples)·for·a·given·cancer·study··\n",·Rd_tag·=·"RCODE"),·303 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·case·lists·(collection·of·samples)·for·a·given·cancer·study··\n",·Rd_tag·=·"RCODE"),·
304 ········structure("mycancerstudy·=·getCancerStudies(mycgds)[2,1]\n",·Rd_tag·=·"RCODE"),·304 ········structure("mycancerstudy·=·getCancerStudies(mycgds)[2,1]\n",·Rd_tag·=·"RCODE"),·
305 ········structure("mycaselist·=·getCaseLists(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·305 ········structure("mycaselist·=·getCaseLists(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·
306 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·genetic·profiles\n",·Rd_tag·=·"RCODE"),·306 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·genetic·profiles\n",·Rd_tag·=·"RCODE"),·
307 ········structure("mygeneticprofile·=·getGeneticProfiles(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·307 ········structure("mygeneticprofile·=·getGeneticProfiles(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·
308 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·data·slices·for·a·specified·list·of·genes,·genetic·profile·and·case·list\n",·Rd_tag·=·"RCODE"),·308 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·data·slices·for·a·specified·list·of·genes,·genetic·profile·and·case·list\n",·Rd_tag·=·"RCODE"),·
309 ········structure("getProfileData(mycgds,c('BRCA1','BRCA2'),mygeneticprofile,mycaselist)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-cgdsr-1.3.0/man/cgdsr-getGeneticProfiles.Rd",·class·=·"Rd",·meta·=·list(309 ········structure("getProfileData(mycgds,c('BRCA1','BRCA2'),mygeneticprofile,mycaselist)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-cgdsr-1.3.0/2nd/man/cgdsr-getGeneticProfiles.Rd",·class·=·"Rd",·meta·=·list(
310 ····docType·=·character(0)),·prepared·=·3L)310 ····docType·=·character(0)),·prepared·=·3L)
  
311 cgdsr-getMutationData·(list)·=·structure(list(structure(list(structure("Get·mutation·data·for·cancer·study",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·311 cgdsr-getMutationData·(list)·=·structure(list(structure(list(structure("Get·mutation·data·for·cancer·study",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
312 ····structure(list(structure("cgdsr-getMutationData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·312 ····structure(list(structure("cgdsr-getMutationData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
313 ····structure(list(structure("cgdsr-getMutationData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·313 ····structure(list(structure("cgdsr-getMutationData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
314 ····structure(list(structure("getMutationData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·314 ····structure(list(structure("getMutationData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
315 ····structure(list(structure("getMutationData.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·315 ····structure(list(structure("getMutationData.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
Offset 399, 15 lines modifiedOffset 399, 15 lines modified
399 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Create·CGDS·object\n",·Rd_tag·=·"RCODE"),·399 ····structure(list(structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Create·CGDS·object\n",·Rd_tag·=·"RCODE"),·
400 ········structure("mycgds·=·CGDS(\"http://www.cbioportal.org/\")\n",·Rd_tag·=·"RCODE"),·400 ········structure("mycgds·=·CGDS(\"http://www.cbioportal.org/\")\n",·Rd_tag·=·"RCODE"),·
401 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("getCancerStudies(mycgds)\n",·Rd_tag·=·"RCODE"),·401 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("getCancerStudies(mycgds)\n",·Rd_tag·=·"RCODE"),·
402 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·case·lists·(collection·of·samples)·for·a·given·cancer·study·\n",·Rd_tag·=·"RCODE"),·402 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·case·lists·(collection·of·samples)·for·a·given·cancer·study·\n",·Rd_tag·=·"RCODE"),·
403 ········structure("#·Get·Extended·Mutation·Data·for·EGFR·and·PTEN·in·TCGA·GBM\n",·Rd_tag·=·"RCODE"),·403 ········structure("#·Get·Extended·Mutation·Data·for·EGFR·and·PTEN·in·TCGA·GBM\n",·Rd_tag·=·"RCODE"),·
404 ········structure("\n",·Rd_tag·=·"RCODE"),·structure(list(structure("\n",·Rd_tag·=·"RCODE"),·404 ········structure("\n",·Rd_tag·=·"RCODE"),·structure(list(structure("\n",·Rd_tag·=·"RCODE"),·
405 ············structure("getMutationData(mycgds,gbm_tcga_all,gbm_tcga_mutations,c('EGFR','PTEN'))\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\donttest"),·405 ············structure("getMutationData(mycgds,gbm_tcga_all,gbm_tcga_mutations,c('EGFR','PTEN'))\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\donttest"),·
406 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-cgdsr-1.3.0/man/cgdsr-getMutationData.Rd",·class·=·"Rd",·meta·=·list(406 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-cgdsr-1.3.0/2nd/man/cgdsr-getMutationData.Rd",·class·=·"Rd",·meta·=·list(
407 ····docType·=·character(0)),·prepared·=·3L)407 ····docType·=·character(0)),·prepared·=·3L)
  
408 cgdsr-getProfileData·(list)·=·structure(list(structure(list(structure("Retrieves·genomic·profile·data·for·genes·and·genetic·profiles.",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·408 cgdsr-getProfileData·(list)·=·structure(list(structure(list(structure("Retrieves·genomic·profile·data·for·genes·and·genetic·profiles.",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
409 ····structure(list(structure("cgdsr-getProfileData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·409 ····structure(list(structure("cgdsr-getProfileData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
410 ····structure(list(structure("cgdsr-getProfileData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·410 ····structure(list(structure("cgdsr-getProfileData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
411 ····structure(list(structure("getProfileData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·411 ····structure(list(structure("getProfileData",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
412 ····structure(list(structure("getProfileData.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·412 ····structure(list(structure("getProfileData.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
Offset 478, 15 lines modifiedOffset 478, 15 lines modified
478 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·data·slice·for·a·single·gene\n",·Rd_tag·=·"RCODE"),·478 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·data·slice·for·a·single·gene\n",·Rd_tag·=·"RCODE"),·
479 ········structure("getProfileData(mycgds,'HMGA2',mygeneticprofile,mycaselist)\n",·Rd_tag·=·"RCODE"),·479 ········structure("getProfileData(mycgds,'HMGA2',mygeneticprofile,mycaselist)\n",·Rd_tag·=·"RCODE"),·
480 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·data·slice·for·multiple·genetic·profiles·and·single·gene\n",·Rd_tag·=·"RCODE"),·480 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·data·slice·for·multiple·genetic·profiles·and·single·gene\n",·Rd_tag·=·"RCODE"),·
481 ········structure("getProfileData(mycgds,'HMGA2',getGeneticProfiles(mycgds,mycancerstudy)[c(1,2),1],mycaselist)\n",·Rd_tag·=·"RCODE"),·481 ········structure("getProfileData(mycgds,'HMGA2',getGeneticProfiles(mycgds,mycancerstudy)[c(1,2),1],mycaselist)\n",·Rd_tag·=·"RCODE"),·
482 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·the·same·dataset·from·a·vector·of·case·IDs\n",·Rd_tag·=·"RCODE"),·482 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·the·same·dataset·from·a·vector·of·case·IDs\n",·Rd_tag·=·"RCODE"),·
483 ········structure("cases·=·unlist(strsplit(getCaseLists(mycgds,mycancerstudy)[1,'case_ids'],'·'))\n",·Rd_tag·=·"RCODE"),·483 ········structure("cases·=·unlist(strsplit(getCaseLists(mycgds,mycancerstudy)[1,'case_ids'],'·'))\n",·Rd_tag·=·"RCODE"),·
484 ········structure("getProfileData(mycgds,'HMGA2',getGeneticProfiles(mycgds,mycancerstudy)[c(1,2),1],cases=cases)\n",·Rd_tag·=·"RCODE"),·484 ········structure("getProfileData(mycgds,'HMGA2',getGeneticProfiles(mycgds,mycancerstudy)[c(1,2),1],cases=cases)\n",·Rd_tag·=·"RCODE"),·
485 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-cgdsr-1.3.0/man/cgdsr-getProfileData.Rd",·class·=·"Rd",·meta·=·list(485 ········structure("\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-cgdsr-1.3.0/2nd/man/cgdsr-getProfileData.Rd",·class·=·"Rd",·meta·=·list(
486 ····docType·=·character(0)),·prepared·=·3L)486 ····docType·=·character(0)),·prepared·=·3L)
  
487 cgdsr-package·(list)·=·structure(list(structure(list(structure("\n",·Rd_tag·=·"TEXT"),·487 cgdsr-package·(list)·=·structure(list(structure(list(structure("\n",·Rd_tag·=·"TEXT"),·
488 ····structure("CGDS-R·:·a·library·for·accessing·data·in·the·MSKCC·Cancer·Genomics·Data·Server\n",·Rd_tag·=·"TEXT"),·488 ····structure("CGDS-R·:·a·library·for·accessing·data·in·the·MSKCC·Cancer·Genomics·Data·Server\n",·Rd_tag·=·"TEXT"),·
489 ····structure("(CGDS).·\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·489 ····structure("(CGDS).·\n",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
490 ····structure(list(structure("cgdsr-package",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·490 ····structure(list(structure("cgdsr-package",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
491 ····structure(list(structure("cgdsr-package",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·491 ····structure(list(structure("cgdsr-package",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
Offset 566, 15 lines modifiedOffset 566, 15 lines modified
566 ········structure("mycancerstudy·=·getCancerStudies(mycgds)[2,1]\n",·Rd_tag·=·"RCODE"),·566 ········structure("mycancerstudy·=·getCancerStudies(mycgds)[2,1]\n",·Rd_tag·=·"RCODE"),·
567 ········structure("mycaselist·=·getCaseLists(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·567 ········structure("mycaselist·=·getCaseLists(mycgds,mycancerstudy)[1,1]\n",·Rd_tag·=·"RCODE"),·
568 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·genetic·profiles\n",·Rd_tag·=·"RCODE"),·568 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·available·genetic·profiles\n",·Rd_tag·=·"RCODE"),·
569 ········structure("mygeneticprofile·=·getGeneticProfiles(mycgds,mycancerstudy)[4,1]\n",·Rd_tag·=·"RCODE"),·569 ········structure("mygeneticprofile·=·getGeneticProfiles(mycgds,mycancerstudy)[4,1]\n",·Rd_tag·=·"RCODE"),·
570 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·data·slices·for·a·specified·list·of·genes,·genetic·profile·and·case·list\n",·Rd_tag·=·"RCODE"),·570 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·data·slices·for·a·specified·list·of·genes,·genetic·profile·and·case·list\n",·Rd_tag·=·"RCODE"),·
571 ········structure("getProfileData(mycgds,c('BRCA1','BRCA2'),mygeneticprofile,mycaselist)\n",·Rd_tag·=·"RCODE"),·571 ········structure("getProfileData(mycgds,c('BRCA1','BRCA2'),mygeneticprofile,mycaselist)\n",·Rd_tag·=·"RCODE"),·
572 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·clinical·data·for·the·case·list\n",·Rd_tag·=·"RCODE"),·572 ········structure("\n",·Rd_tag·=·"RCODE"),·structure("#·Get·clinical·data·for·the·case·list\n",·Rd_tag·=·"RCODE"),·
573 ········structure("myclinicaldata·=·getClinicalData(mycgds,mycaselist)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/1st/r-cran-cgdsr-1.3.0/man/cgdsr-package.Rd",·class·=·"Rd",·meta·=·list(573 ········structure("myclinicaldata·=·getClinicalData(mycgds,mycaselist)\n",·Rd_tag·=·"RCODE")),·Rd_tag·=·"\\examples")),·Rdfile·=·"/build/2/r-cran-cgdsr-1.3.0/2nd/man/cgdsr-package.Rd",·class·=·"Rd",·meta·=·list(
574 ····docType·=·"package"),·prepared·=·3L)574 ····docType·=·"package"),·prepared·=·3L)
  
575 cgdsr-plot·(list)·=·structure(list(structure(list(structure("Generic·plot·function·for·CGDS·API·data.",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·575 cgdsr-plot·(list)·=·structure(list(structure(list(structure("Generic·plot·function·for·CGDS·API·data.",·Rd_tag·=·"TEXT")),·Rd_tag·=·"\\title"),·
576 ····structure(list(structure("cgdsr-plot",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·576 ····structure(list(structure("cgdsr-plot",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\name"),·
577 ····structure(list(structure("cgdsr-plot",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·577 ····structure(list(structure("cgdsr-plot",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
578 ····structure(list(structure("plot",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·578 ····structure(list(structure("plot",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
579 ····structure(list(structure("plot.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·579 ····structure(list(structure("plot.CGDS",·Rd_tag·=·"VERB")),·Rd_tag·=·"\\alias"),·
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./usr/lib/R/site-library/cgdsr/help/cgdsr.rdx
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cgdsr.rdx-content
    
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paths.rds-content
    
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