⊟
5.56 KB
/srv/reproducible-results/rbuild-debian/r-b-build.sXfwgWHE/b1/r-bioc-genomicfeatures_1.56.0+dfsg-1_arm64.changes vs.
/srv/reproducible-results/rbuild-debian/r-b-build.sXfwgWHE/b2/r-bioc-genomicfeatures_1.56.0+dfsg-1_arm64.changes
⊟
232 B
Files
    
Offset 1, 2 lines modifiedOffset 1, 2 lines modified
  
1 ·8f6e2404c6b4258ad8a6079a6da7a702·926380·gnu-r·optional·r-bioc-genomicfeatures_1.56.0+dfsg-1_all.deb1 ·88d1f9a878157ce89f8201b609af0dbe·926220·gnu-r·optional·r-bioc-genomicfeatures_1.56.0+dfsg-1_all.deb
⊟
5.12 KB
r-bioc-genomicfeatures_1.56.0+dfsg-1_all.deb
⊟
452 B
file list
    
Offset 1, 3 lines modifiedOffset 1, 3 lines modified
1 -rw-r--r--···0········0········0········4·2024-08-18·10:06:12.000000·debian-binary1 -rw-r--r--···0········0········0········4·2024-08-18·10:06:12.000000·debian-binary
2 -rw-r--r--···0········0········0·····2416·2024-08-18·10:06:12.000000·control.tar.xz2 -rw-r--r--···0········0········0·····2412·2024-08-18·10:06:12.000000·control.tar.xz
3 -rw-r--r--···0········0········0···923772·2024-08-18·10:06:12.000000·data.tar.xz3 -rw-r--r--···0········0········0···923616·2024-08-18·10:06:12.000000·data.tar.xz
⊟
98.0 B
control.tar.xz
⊟
70.0 B
control.tar
⊟
48.0 B
./md5sums
⊟
30.0 B
./md5sums
Files differ
⊟
4.49 KB
data.tar.xz
⊟
4.47 KB
data.tar
⊟
3.27 KB
./usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.html
    
Offset 142, 15 lines modifiedOffset 142, 15 lines modified
142 <div·class="frontmatter">142 <div·class="frontmatter">
143 <div·class="title"><h1>Obtaining·and·Utilizing·TxDb·Objects</h1></div>143 <div·class="title"><h1>Obtaining·and·Utilizing·TxDb·Objects</h1></div>
144 <div·class="author"><h2>list(name·=·“Marc·Carlson”)144 <div·class="author"><h2>list(name·=·“Marc·Carlson”)
145 list(name·=·“Patrick·Aboyoun”)145 list(name·=·“Patrick·Aboyoun”)
146 list(name·=·“Herv&lt;U+00E9&gt;·Pag&lt;U+00E8&gt;s”)146 list(name·=·“Herv&lt;U+00E9&gt;·Pag&lt;U+00E8&gt;s”)
147 list(name·=·“Seth·Falcon”)147 list(name·=·“Seth·Falcon”)
148 list(name·=·“Martin·Morgan”)</h2></div>148 list(name·=·“Martin·Morgan”)</h2></div>
149 <div·class="date"><h3>Tuesday,·November·05,·2024</h3></div>149 <div·class="date"><h3>Tuesday,·December·09,·2025</h3></div>
150 </div>150 </div>
151 <div·class="body">151 <div·class="body">
152 <h1·id="introduction">Introduction</h1>152 <h1·id="introduction">Introduction</h1>
153 <p>The·<code>GenomicFeatures</code>·package·implements·the·<code>TxDb</code>·container·for153 <p>The·<code>GenomicFeatures</code>·package·implements·the·<code>TxDb</code>·container·for
154 storing·transcript·metadata·for·a·given·organism.·A·<code>TxDb</code>·object154 storing·transcript·metadata·for·a·given·organism.·A·<code>TxDb</code>·object
155 stores·the·genomic·positions·of·the·5’·and·3’·untranslated·regions155 stores·the·genomic·positions·of·the·5’·and·3’·untranslated·regions
156 (UTRs),·protein·coding·sequences·(CDSs),·and·exons·for·a·set·of·mRNA156 (UTRs),·protein·coding·sequences·(CDSs),·and·exons·for·a·set·of·mRNA
Offset 563, 15 lines modifiedOffset 563, 15 lines modified
563 ##·Matrix·products:·default563 ##·Matrix·products:·default
564 ##·BLAS:···/usr/lib/aarch64-linux-gnu/blas/libblas.so.3.12.0·564 ##·BLAS:···/usr/lib/aarch64-linux-gnu/blas/libblas.so.3.12.0·
565 ##·LAPACK:·/usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3.12.0565 ##·LAPACK:·/usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3.12.0
566 ##·566 ##·
567 ##·locale:567 ##·locale:
568 ##·[1]·C568 ##·[1]·C
569 ##·569 ##·
570 ##·time·zone:·/usr/share/zoneinfo/Etc/GMT+12570 ##·time·zone:·/usr/share/zoneinfo/Etc/GMT-14
571 ##·tzcode·source:·system·(glibc)571 ##·tzcode·source:·system·(glibc)
572 ##·572 ##·
573 ##·attached·base·packages:573 ##·attached·base·packages:
574 ##·[1]·stats·····graphics··grDevices·utils·····datasets··methods···base·····574 ##·[1]·stats·····graphics··grDevices·utils·····datasets··methods···base·····
575 ##·575 ##·
576 ##·other·attached·packages:576 ##·other·attached·packages:
577 ##·[1]·markdown_1.12·knitr_1.48···577 ##·[1]·markdown_1.12·knitr_1.48···
⊟
1.83 KB
html2text {}
    
Offset 1, 12 lines modifiedOffset 1, 12 lines modified
1 *\x8**\x8**\x8**\x8**\x8**\x8*·O\x8Ob\x8bt\x8ta\x8ai\x8in\x8ni\x8in\x8ng\x8g·a\x8an\x8nd\x8d·U\x8Ut\x8ti\x8il\x8li\x8iz\x8zi\x8in\x8ng\x8g·T\x8Tx\x8xD\x8Db\x8b·O\x8Ob\x8bj\x8je\x8ec\x8ct\x8ts\x8s·*\x8**\x8**\x8**\x8**\x8**\x8*1 *\x8**\x8**\x8**\x8**\x8**\x8*·O\x8Ob\x8bt\x8ta\x8ai\x8in\x8ni\x8in\x8ng\x8g·a\x8an\x8nd\x8d·U\x8Ut\x8ti\x8il\x8li\x8iz\x8zi\x8in\x8ng\x8g·T\x8Tx\x8xD\x8Db\x8b·O\x8Ob\x8bj\x8je\x8ec\x8ct\x8ts\x8s·*\x8**\x8**\x8**\x8**\x8**\x8*
2 *\x8**\x8**\x8**\x8**\x8*·l\x8li\x8is\x8st\x8t(\x8(n\x8na\x8am\x8me\x8e·=\x8=·?\x8“M\x8Ma\x8ar\x8rc\x8c·C\x8Ca\x8ar\x8rl\x8ls\x8so\x8on\x8n?\x8”)\x8)·l\x8li\x8is\x8st\x8t(\x8(n\x8na\x8am\x8me\x8e·=\x8=·?\x8“P\x8Pa\x8at\x8tr\x8ri\x8ic\x8ck\x8k·A\x8Ab\x8bo\x8oy\x8yo\x8ou\x8un\x8n?\x8”)\x8)·l\x8li\x8is\x8st\x8t(\x8(n\x8na\x8am\x8me\x8e·=\x8=2 *\x8**\x8**\x8**\x8**\x8*·l\x8li\x8is\x8st\x8t(\x8(n\x8na\x8am\x8me\x8e·=\x8=·?\x8“M\x8Ma\x8ar\x8rc\x8c·C\x8Ca\x8ar\x8rl\x8ls\x8so\x8on\x8n?\x8”)\x8)·l\x8li\x8is\x8st\x8t(\x8(n\x8na\x8am\x8me\x8e·=\x8=·?\x8“P\x8Pa\x8at\x8tr\x8ri\x8ic\x8ck\x8k·A\x8Ab\x8bo\x8oy\x8yo\x8ou\x8un\x8n?\x8”)\x8)·l\x8li\x8is\x8st\x8t(\x8(n\x8na\x8am\x8me\x8e·=\x8=
3 ?\x8“H\x8He\x8er\x8rv\x8v<\x8<U\x8U+\x8+0\x800\x80E\x8E9\x89>\x8>·P\x8Pa\x8ag\x8g<\x8<U\x8U+\x8+0\x800\x80E\x8E8\x88>\x8>s\x8s?\x8”)\x8)·l\x8li\x8is\x8st\x8t(\x8(n\x8na\x8am\x8me\x8e·=\x8=·?\x8“S\x8Se\x8et\x8th\x8h·F\x8Fa\x8al\x8lc\x8co\x8on\x8n?\x8”)\x8)·l\x8li\x8is\x8st\x8t(\x8(n\x8na\x8am\x8me\x8e·=\x8=·?\x8“M\x8Ma\x8ar\x8rt\x8ti\x8in\x8n3 ?\x8“H\x8He\x8er\x8rv\x8v<\x8<U\x8U+\x8+0\x800\x80E\x8E9\x89>\x8>·P\x8Pa\x8ag\x8g<\x8<U\x8U+\x8+0\x800\x80E\x8E8\x88>\x8>s\x8s?\x8”)\x8)·l\x8li\x8is\x8st\x8t(\x8(n\x8na\x8am\x8me\x8e·=\x8=·?\x8“S\x8Se\x8et\x8th\x8h·F\x8Fa\x8al\x8lc\x8co\x8on\x8n?\x8”)\x8)·l\x8li\x8is\x8st\x8t(\x8(n\x8na\x8am\x8me\x8e·=\x8=·?\x8“M\x8Ma\x8ar\x8rt\x8ti\x8in\x8n
4 M\x8Mo\x8or\x8rg\x8ga\x8an\x8n?\x8”)\x8)·*\x8**\x8**\x8**\x8**\x8*4 M\x8Mo\x8or\x8rg\x8ga\x8an\x8n?\x8”)\x8)·*\x8**\x8**\x8**\x8**\x8*
5 *\x8**\x8**\x8**\x8*·T\x8Tu\x8ue\x8es\x8sd\x8da\x8ay\x8y,\x8,·N.No.ov.ve.em.mb.be.er.r·0.05.5,.,·2.20.02.24.4·*\x8**\x8**\x8**\x8*5 *\x8**\x8**\x8**\x8*·T\x8Tu\x8ue\x8es\x8sd\x8da\x8ay\x8y,\x8,·D.De.ec.ce.em.mb.be.er.r·0.09.9,.,·2.20.02.25.5·*\x8**\x8**\x8**\x8*
6 *\x8**\x8**\x8**\x8**\x8**\x8*·I\x8In\x8nt\x8tr\x8ro\x8od\x8du\x8uc\x8ct\x8ti\x8io\x8on\x8n·*\x8**\x8**\x8**\x8**\x8**\x8*6 *\x8**\x8**\x8**\x8**\x8**\x8*·I\x8In\x8nt\x8tr\x8ro\x8od\x8du\x8uc\x8ct\x8ti\x8io\x8on\x8n·*\x8**\x8**\x8**\x8**\x8**\x8*
7 The·GenomicFeatures·package·implements·the·TxDb·container·for·storing7 The·GenomicFeatures·package·implements·the·TxDb·container·for·storing
8 transcript·metadata·for·a·given·organism.·A·TxDb·object·stores·the·genomic8 transcript·metadata·for·a·given·organism.·A·TxDb·object·stores·the·genomic
9 positions·of·the·5’·and·3’·untranslated·regions·(UTRs),·protein·coding9 positions·of·the·5’·and·3’·untranslated·regions·(UTRs),·protein·coding
10 sequences·(CDSs),·and·exons·for·a·set·of·mRNA·transcripts.·The·genomic10 sequences·(CDSs),·and·exons·for·a·set·of·mRNA·transcripts.·The·genomic
11 positions·are·stored·and·reported·with·respect·to·a·given·genome·assembly.·TxDb11 positions·are·stored·and·reported·with·respect·to·a·given·genome·assembly.·TxDb
12 objects·have·numerous·accessors·functions·to·allow·such·features·to·be12 objects·have·numerous·accessors·functions·to·allow·such·features·to·be
Offset 290, 15 lines modifiedOffset 290, 15 lines modified
290 ##·Matrix·products:·default290 ##·Matrix·products:·default
291 ##·BLAS:···/usr/lib/aarch64-linux-gnu/blas/libblas.so.3.12.0291 ##·BLAS:···/usr/lib/aarch64-linux-gnu/blas/libblas.so.3.12.0
292 ##·LAPACK:·/usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3.12.0292 ##·LAPACK:·/usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3.12.0
293 ##293 ##
294 ##·locale:294 ##·locale:
295 ##·[1]·C295 ##·[1]·C
296 ##296 ##
297 ##·time·zone:·/usr/share/zoneinfo/Etc/GMT+12297 ##·time·zone:·/usr/share/zoneinfo/Etc/GMT-14
298 ##·tzcode·source:·system·(glibc)298 ##·tzcode·source:·system·(glibc)
299 ##299 ##
300 ##·attached·base·packages:300 ##·attached·base·packages:
301 ##·[1]·stats·····graphics··grDevices·utils·····datasets··methods···base301 ##·[1]·stats·····graphics··grDevices·utils·····datasets··methods···base
302 ##302 ##
303 ##·other·attached·packages:303 ##·other·attached·packages:
304 ##·[1]·markdown_1.12·knitr_1.48304 ##·[1]·markdown_1.12·knitr_1.48
⊟
1.19 KB
./usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.md
    
Offset 2, 15 lines modifiedOffset 2, 15 lines modified
2 title:·"Obtaining·and·Utilizing·TxDb·Objects"2 title:·"Obtaining·and·Utilizing·TxDb·Objects"
3 author:3 author:
4 -·name:·Marc·Carlson4 -·name:·Marc·Carlson
5 -·name:·Patrick·Aboyoun5 -·name:·Patrick·Aboyoun
6 -·name:·Hervé·Pagès6 -·name:·Hervé·Pagès
7 -·name:·Seth·Falcon7 -·name:·Seth·Falcon
8 -·name:·Martin·Morgan8 -·name:·Martin·Morgan
9 date:·"Tuesday,·November·05,·2024"9 date:·"Tuesday,·December·09,·2025"
10 package:·GenomicFeatures10 package:·GenomicFeatures
11 vignette:·|11 vignette:·|
12 ··%\VignetteIndexEntry{Obtaining·and·Utilizing·TxDb·Objects}12 ··%\VignetteIndexEntry{Obtaining·and·Utilizing·TxDb·Objects}
13 ··%\VignetteEngine{knitr::rmarkdown}13 ··%\VignetteEngine{knitr::rmarkdown}
14 ··%\VignetteEncoding{UTF-8}14 ··%\VignetteEncoding{UTF-8}
15 ··%\VignetteDepends{GenomicFeatures,TxDb.Hsapiens.UCSC.hg19.knownGene,BSgenome.Hsapiens.UCSC.hg19}15 ··%\VignetteDepends{GenomicFeatures,TxDb.Hsapiens.UCSC.hg19.knownGene,BSgenome.Hsapiens.UCSC.hg19}
16 ··%\VignetteKeywords{annotation,·database}16 ··%\VignetteKeywords{annotation,·database}
Offset 732, 15 lines modifiedOffset 732, 15 lines modified
732 ##·Matrix·products:·default732 ##·Matrix·products:·default
733 ##·BLAS:···/usr/lib/aarch64-linux-gnu/blas/libblas.so.3.12.0·733 ##·BLAS:···/usr/lib/aarch64-linux-gnu/blas/libblas.so.3.12.0·
734 ##·LAPACK:·/usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3.12.0734 ##·LAPACK:·/usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3.12.0
735 ##·735 ##·
736 ##·locale:736 ##·locale:
737 ##·[1]·C737 ##·[1]·C
738 ##·738 ##·
739 ##·time·zone:·/usr/share/zoneinfo/Etc/GMT+12739 ##·time·zone:·/usr/share/zoneinfo/Etc/GMT-14
740 ##·tzcode·source:·system·(glibc)740 ##·tzcode·source:·system·(glibc)
741 ##·741 ##·
742 ##·attached·base·packages:742 ##·attached·base·packages:
743 ##·[1]·stats·····graphics··grDevices·utils·····datasets··methods···base·····743 ##·[1]·stats·····graphics··grDevices·utils·····datasets··methods···base·····
744 ##·744 ##·
745 ##·other·attached·packages:745 ##·other·attached·packages:
746 ##·[1]·markdown_1.12·knitr_1.48···746 ##·[1]·markdown_1.12·knitr_1.48···
Generated by diffoscope 282