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1 ·46207c55c0ea2f2ef81efdb0f5fccae0·1651840·gnu-r·optional·r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb1 ·f4e00d7e2a57b0240f0f65b8049bab20·1650048·gnu-r·optional·r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb
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r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb
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./usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.html
    
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139 </style>139 </style>
140 <link·rel="stylesheet"·href="https://cdn.jsdelivr.net/npm/katex/dist/katex.min.css">140 <link·rel="stylesheet"·href="https://cdn.jsdelivr.net/npm/katex/dist/katex.min.css">
141 </head>141 </head>
142 <body>142 <body>
143 <div·class="frontmatter">143 <div·class="frontmatter">
144 <div·class="title"><h1>Making·and·Utilizing·TxDb·Objects</h1></div>144 <div·class="title"><h1>Making·and·Utilizing·TxDb·Objects</h1></div>
145 <div·class="author"><h2>Marc·Carlson,·Patrick·Aboyoun,·Hervé·Pagès,·Seth·Falcon,·Martin·Morgan</h2></div>145 <div·class="author"><h2>Marc·Carlson,·Patrick·Aboyoun,·Hervé·Pagès,·Seth·Falcon,·Martin·Morgan</h2></div>
146 <div·class="date"><h3>Thursday,·May·22,·2025</h3></div>146 <div·class="date"><h3>Friday,·April·19,·2024</h3></div>
147 </div>147 </div>
148 <div·class="body">148 <div·class="body">
149 <h2·id="introduction">Introduction</h2>149 <h2·id="introduction">Introduction</h2>
150 <p>The·<code>GenomicFeatures</code>·package·retrieves·and·manages150 <p>The·<code>GenomicFeatures</code>·package·retrieves·and·manages
151 transcript-related·features·from·the·UCSC·Genome151 transcript-related·features·from·the·UCSC·Genome
152 Bioinformatics\footnote{(<a·href="https://genome.ucsc.edu/)%7D">https://genome.ucsc.edu/)}</a>·and152 Bioinformatics\footnote{(<a·href="https://genome.ucsc.edu/)%7D">https://genome.ucsc.edu/)}</a>·and
153 BioMart\footnote{(<a·href="http://www.biomart.org/)%7D">http://www.biomart.org/)}</a>·data·resources.·The153 BioMart\footnote{(<a·href="http://www.biomart.org/)%7D">http://www.biomart.org/)}</a>·data·resources.·The
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1 *\x8**\x8**\x8**\x8**\x8**\x8*·M\x8Ma\x8ak\x8ki\x8in\x8ng\x8g·a\x8an\x8nd\x8d·U\x8Ut\x8ti\x8il\x8li\x8iz\x8zi\x8in\x8ng\x8g·T\x8Tx\x8xD\x8Db\x8b·O\x8Ob\x8bj\x8je\x8ec\x8ct\x8ts\x8s·*\x8**\x8**\x8**\x8**\x8**\x8*1 *\x8**\x8**\x8**\x8**\x8**\x8*·M\x8Ma\x8ak\x8ki\x8in\x8ng\x8g·a\x8an\x8nd\x8d·U\x8Ut\x8ti\x8il\x8li\x8iz\x8zi\x8in\x8ng\x8g·T\x8Tx\x8xD\x8Db\x8b·O\x8Ob\x8bj\x8je\x8ec\x8ct\x8ts\x8s·*\x8**\x8**\x8**\x8**\x8**\x8*
2 *\x8**\x8**\x8**\x8**\x8*·M\x8Ma\x8ar\x8rc\x8c·C\x8Ca\x8ar\x8rl\x8ls\x8so\x8on\x8n,\x8,·P\x8Pa\x8at\x8tr\x8ri\x8ic\x8ck\x8k·A\x8Ab\x8bo\x8oy\x8yo\x8ou\x8un\x8n,\x8,·H\x8He\x8er\x8rv\x8v?\x8é·P\x8Pa\x8ag\x8g?\x8ès\x8s,\x8,·S\x8Se\x8et\x8th\x8h·F\x8Fa\x8al\x8lc\x8co\x8on\x8n,\x8,·M\x8Ma\x8ar\x8rt\x8ti\x8in\x8n·M\x8Mo\x8or\x8rg\x8ga\x8an\x8n2 *\x8**\x8**\x8**\x8**\x8*·M\x8Ma\x8ar\x8rc\x8c·C\x8Ca\x8ar\x8rl\x8ls\x8so\x8on\x8n,\x8,·P\x8Pa\x8at\x8tr\x8ri\x8ic\x8ck\x8k·A\x8Ab\x8bo\x8oy\x8yo\x8ou\x8un\x8n,\x8,·H\x8He\x8er\x8rv\x8v?\x8é·P\x8Pa\x8ag\x8g?\x8ès\x8s,\x8,·S\x8Se\x8et\x8th\x8h·F\x8Fa\x8al\x8lc\x8co\x8on\x8n,\x8,·M\x8Ma\x8ar\x8rt\x8ti\x8in\x8n·M\x8Mo\x8or\x8rg\x8ga\x8an\x8n
3 *\x8**\x8**\x8**\x8**\x8*3 *\x8**\x8**\x8**\x8**\x8*
4 *\x8**\x8**\x8**\x8*·T.Th.hu.ur.rs.sd.da.ay.y,.,·M.Ma.ay.y·2.22.2,.,·2.20.02.25.5·*\x8**\x8**\x8**\x8*4 *\x8**\x8**\x8**\x8*·F.Fr.ri.id.da.ay.y,.,·A.Ap.pr.ri.il.l·1.19.9,.,·2.20.02.24.4·*\x8**\x8**\x8**\x8*
5 *\x8**\x8**\x8**\x8**\x8*·I\x8In\x8nt\x8tr\x8ro\x8od\x8du\x8uc\x8ct\x8ti\x8io\x8on\x8n·*\x8**\x8**\x8**\x8**\x8*5 *\x8**\x8**\x8**\x8**\x8*·I\x8In\x8nt\x8tr\x8ro\x8od\x8du\x8uc\x8ct\x8ti\x8io\x8on\x8n·*\x8**\x8**\x8**\x8**\x8*
6 The·GenomicFeatures·package·retrieves·and·manages·transcript-related·features6 The·GenomicFeatures·package·retrieves·and·manages·transcript-related·features
7 from·the·UCSC·Genome·Bioinformatics\footnote{(_\x8h_\x8t_\x8t_\x8p_\x8s_\x8:_\x8/_\x8/_\x8g_\x8e_\x8n_\x8o_\x8m_\x8e_\x8._\x8u_\x8c_\x8s_\x8c_\x8._\x8e_\x8d_\x8u_\x8/_\x8)_\x8}·and7 from·the·UCSC·Genome·Bioinformatics\footnote{(_\x8h_\x8t_\x8t_\x8p_\x8s_\x8:_\x8/_\x8/_\x8g_\x8e_\x8n_\x8o_\x8m_\x8e_\x8._\x8u_\x8c_\x8s_\x8c_\x8._\x8e_\x8d_\x8u_\x8/_\x8)_\x8}·and
8 BioMart\footnote{(_\x8h_\x8t_\x8t_\x8p_\x8:_\x8/_\x8/_\x8w_\x8w_\x8w_\x8._\x8b_\x8i_\x8o_\x8m_\x8a_\x8r_\x8t_\x8._\x8o_\x8r_\x8g_\x8/_\x8)_\x8}·data·resources.·The·package·is8 BioMart\footnote{(_\x8h_\x8t_\x8t_\x8p_\x8:_\x8/_\x8/_\x8w_\x8w_\x8w_\x8._\x8b_\x8i_\x8o_\x8m_\x8a_\x8r_\x8t_\x8._\x8o_\x8r_\x8g_\x8/_\x8)_\x8}·data·resources.·The·package·is
9 useful·for·ChIP-chip,·ChIP-seq,·and·RNA-seq·analyses.9 useful·for·ChIP-chip,·ChIP-seq,·and·RNA-seq·analyses.
10 suppressPackageStartupMessages(library('GenomicFeatures'))10 suppressPackageStartupMessages(library('GenomicFeatures'))
11 ##·Error·in·library("GenomicFeatures"):·there·is·no·package·called11 ##·Error·in·library("GenomicFeatures"):·there·is·no·package·called
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./usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.md
    
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1 ---1 ---
2 title:·"Making·and·Utilizing·TxDb·Objects"2 title:·"Making·and·Utilizing·TxDb·Objects"
3 author:·"Marc·Carlson,·Patrick·Aboyoun,·Hervé·Pagès,·Seth·Falcon,·Martin·Morgan"3 author:·"Marc·Carlson,·Patrick·Aboyoun,·Hervé·Pagès,·Seth·Falcon,·Martin·Morgan"
4 date:·"Thursday,·May·22,·2025"4 date:·"Friday,·April·19,·2024"
5 package:·GenomicFeatures5 package:·GenomicFeatures
6 output:6 output:
7 ··BiocStyle::html_document:7 ··BiocStyle::html_document:
8 ····df_print:·paged8 ····df_print:·paged
9 ····toc_float:·true9 ····toc_float:·true
10 vignette:·>10 vignette:·>
11 ··%\VignetteIndexEntry{Making·and·Utilizing·TxDb·Objects}11 ··%\VignetteIndexEntry{Making·and·Utilizing·TxDb·Objects}
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