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/srv/reproducible-results/rbuild-debian/r-b-build.KevwGDss/b1/salmon_1.10.2+ds1-1_amd64.changes vs.
/srv/reproducible-results/rbuild-debian/r-b-build.KevwGDss/b2/salmon_1.10.2+ds1-1_amd64.changes
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1 ·88c55a52d11f48c539dad3b09cf70d1f·40675912·debug·optional·salmon-dbgsym_1.10.2+ds1-1_amd64.deb1 ·88c55a52d11f48c539dad3b09cf70d1f·40675912·debug·optional·salmon-dbgsym_1.10.2+ds1-1_amd64.deb
2 ·d60165f7edf38a62cfed3de7f635bab1·3267260·science·optional·salmon_1.10.2+ds1-1_amd64.deb2 ·5cb10d7d27b2792d1239ac5891d3ef2b·3267276·science·optional·salmon_1.10.2+ds1-1_amd64.deb
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salmon_1.10.2+ds1-1_amd64.deb
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1 -rw-r--r--···0········0········0········4·2023-08-16·11:09:23.000000·debian-binary1 -rw-r--r--···0········0········0········4·2023-08-16·11:09:23.000000·debian-binary
2 -rw-r--r--···0········0········0·····2476·2023-08-16·11:09:23.000000·control.tar.xz2 -rw-r--r--···0········0········0·····2472·2023-08-16·11:09:23.000000·control.tar.xz
3 -rw-r--r--···0········0········0··3264592·2023-08-16·11:09:23.000000·data.tar.xz3 -rw-r--r--···0········0········0··3264612·2023-08-16·11:09:23.000000·data.tar.xz
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control.tar.xz
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control.tar
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./md5sums
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./md5sums
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data.tar.xz
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data.tar
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./usr/share/salmon/build-test-logs/LastTest.log
    
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1 Start·testing:·May·30·05:44·-121 Start·testing:·Apr·28·01:59·+14
2 ----------------------------------------------------------2 ----------------------------------------------------------
3 1/2·Testing:·unit_tests3 1/2·Testing:·unit_tests
4 1/2·Test:·unit_tests4 1/2·Test:·unit_tests
5 Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/UnitTests.cmake"5 Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/UnitTests.cmake"
6 Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src6 Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src
7 "unit_tests"·start·time:·May·30·05:44·-127 "unit_tests"·start·time:·Apr·28·01:59·+14
8 Output:8 Output:
9 ----------------------------------------------------------9 ----------------------------------------------------------
10 --·For·unit·tests,·will·set·working·directory·to·/build/reproducible-path/salmon-1.10.2+ds1/tests10 --·For·unit·tests,·will·set·working·directory·to·/build/reproducible-path/salmon-1.10.2+ds1/tests
11 ===============================================================================11 ===============================================================================
12 All·tests·passed·(2011964·assertions·in·4·test·cases)12 All·tests·passed·(1990254·assertions·in·4·test·cases)
  
13 <end·of·output>13 <end·of·output>
14 Test·time·=···0.22·sec14 Test·time·=···1.19·sec
15 ----------------------------------------------------------15 ----------------------------------------------------------
16 Test·Passed.16 Test·Passed.
17 "unit_tests"·end·time:·May·30·05:44·-1217 "unit_tests"·end·time:·Apr·28·01:59·+14
18 "unit_tests"·time·elapsed:·00:00:0018 "unit_tests"·time·elapsed:·00:00:01
19 ----------------------------------------------------------19 ----------------------------------------------------------
  
20 2/2·Testing:·salmon_read_test_quasi20 2/2·Testing:·salmon_read_test_quasi
21 2/2·Test:·salmon_read_test_quasi21 2/2·Test:·salmon_read_test_quasi
22 Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/TestSalmonQuasi.cmake"22 Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/TestSalmonQuasi.cmake"
23 Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src23 Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src
24 "salmon_read_test_quasi"·start·time:·May·30·05:44·-1224 "salmon_read_test_quasi"·start·time:·Apr·28·01:59·+14
25 Output:25 Output:
26 ----------------------------------------------------------26 ----------------------------------------------------------
27 sample_data/27 sample_data/
28 sample_data/reads_2.fastq28 sample_data/reads_2.fastq
29 sample_data/sample_alignments.bam29 sample_data/sample_alignments.bam
30 sample_data/transcripts.fasta30 sample_data/transcripts.fasta
31 sample_data/reads_1.fastq31 sample_data/reads_1.fastq
32 index·["sample_salmon_quasi_index"]·did·not·previously·exist··.·.·.·creating·it32 index·["sample_salmon_quasi_index"]·did·not·previously·exist··.·.·.·creating·it
33 [2025-05-30·05:44:33.244]·[jLog]·[warning]·The·salmon·index·is·being·built·without·any·decoy·sequences.··It·is·recommended·that·decoy·sequence·(either·computed·auxiliary·decoy·sequence·or·the·genome·of·the·organism)·be·provided·during·indexing.·Further·details·can·be·found·at·https://salmon.readthedocs.io/en/latest/salmon.html#preparing-transcriptome-indices-mapping-based-mode.33 [2024-04-28·01:59:08.657]·[jLog]·[warning]·The·salmon·index·is·being·built·without·any·decoy·sequences.··It·is·recommended·that·decoy·sequence·(either·computed·auxiliary·decoy·sequence·or·the·genome·of·the·organism)·be·provided·during·indexing.·Further·details·can·be·found·at·https://salmon.readthedocs.io/en/latest/salmon.html#preparing-transcriptome-indices-mapping-based-mode.
34 [2025-05-30·05:44:33.244]·[jLog]·[info]·building·index34 [2024-04-28·01:59:08.657]·[jLog]·[info]·building·index
35 out·:·sample_salmon_quasi_index35 out·:·sample_salmon_quasi_index
36 [2025-05-30·05:44:33.244]·[puff::index::jointLog]·[info]·Running·fixFasta36 [2024-04-28·01:59:08.657]·[puff::index::jointLog]·[info]·Running·fixFasta
  
37 [Step·1·of·4]·:·counting·k-mers37 [Step·1·of·4]·:·counting·k-mers
  
38 [2025-05-30·05:44:33.248]·[puff::index::jointLog]·[info]·Replaced·0·non-ATCG·nucleotides38 [2024-04-28·01:59:08.693]·[puff::index::jointLog]·[info]·Replaced·0·non-ATCG·nucleotides
39 [2025-05-30·05:44:33.248]·[puff::index::jointLog]·[info]·Clipped·poly-A·tails·from·0·transcripts39 [2024-04-28·01:59:08.693]·[puff::index::jointLog]·[info]·Clipped·poly-A·tails·from·0·transcripts
40 wrote·15·cleaned·references40 wrote·15·cleaned·references
41 [2025-05-30·05:44:33.248]·[puff::index::jointLog]·[info]·Filter·size·not·provided;·estimating·from·number·of·distinct·k-mers41 [2024-04-28·01:59:08.693]·[puff::index::jointLog]·[info]·Filter·size·not·provided;·estimating·from·number·of·distinct·k-mers
42 [2025-05-30·05:44:33.248]·[puff::index::jointLog]·[info]·ntHll·estimated·54811·distinct·k-mers,·setting·filter·size·to·2^2042 [2024-04-28·01:59:08.702]·[puff::index::jointLog]·[info]·ntHll·estimated·54811·distinct·k-mers,·setting·filter·size·to·2^20
43 Threads·=·243 Threads·=·2
44 Vertex·length·=·3144 Vertex·length·=·31
45 Hash·functions·=·545 Hash·functions·=·5
46 Filter·size·=·104857646 Filter·size·=·1048576
47 Capacity·=·247 Capacity·=·2
48 Files:·48 Files:·
49 sample_salmon_quasi_index/ref_k31_fixed.fa49 sample_salmon_quasi_index/ref_k31_fixed.fa
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