| Offset 1, 4 lines modified | Offset 1, 4 lines modified | ||
| 1 | ·f | 1 | ·81f6d07d313aae34b7855b3025d9e73b·4132572·doc·optional·libbiojava-java-doc_1.9.7+dfsg-1_all.deb |
| 2 | ·ab782163f0e532230201e8c8b6fd1191·5512·java·optional·libbiojava-java_1.9.7+dfsg-1_all.deb | 2 | ·ab782163f0e532230201e8c8b6fd1191·5512·java·optional·libbiojava-java_1.9.7+dfsg-1_all.deb |
| 3 | ·0088c3dc56fe7264a9179c89ebaae3d1·3154416·java·optional·libbiojava1.9-java_1.9.7+dfsg-1_all.deb | 3 | ·0088c3dc56fe7264a9179c89ebaae3d1·3154416·java·optional·libbiojava1.9-java_1.9.7+dfsg-1_all.deb |
| Offset 1, 3 lines modified | Offset 1, 3 lines modified | ||
| 1 | -rw-r--r--···0········0········0········4·2023-11-29·07:09:37.000000·debian-binary | 1 | -rw-r--r--···0········0········0········4·2023-11-29·07:09:37.000000·debian-binary |
| 2 | -rw-r--r--···0········0········0···1185 | 2 | -rw-r--r--···0········0········0···118544·2023-11-29·07:09:37.000000·control.tar.xz |
| 3 | -rw-r--r--···0········0········0··40138 | 3 | -rw-r--r--···0········0········0··4013836·2023-11-29·07:09:37.000000·data.tar.xz |
| Offset 1, 13 lines modified | Offset 1, 13 lines modified | ||
| 1 | ··Streams:···········1 | 1 | ··Streams:···········1 |
| 2 | ··Blocks:············1 | 2 | ··Blocks:············1 |
| 3 | ··Compressed·size:···115.8·KiB·(1185 | 3 | ··Compressed·size:···115.8·KiB·(118544·B) |
| 4 | ··Uncompressed·size:·630.0·KiB·(645120·B) | 4 | ··Uncompressed·size:·630.0·KiB·(645120·B) |
| 5 | ··Ratio:·············0.184 | 5 | ··Ratio:·············0.184 |
| 6 | ··Check:·············CRC64 | 6 | ··Check:·············CRC64 |
| 7 | ··Stream·Padding:····0·B | 7 | ··Stream·Padding:····0·B |
| 8 | ··Streams: | 8 | ··Streams: |
| 9 | ····Stream····Blocks······CompOffset····UncompOffset········CompSize······UncompSize··Ratio··Check······Padding | 9 | ····Stream····Blocks······CompOffset····UncompOffset········CompSize······UncompSize··Ratio··Check······Padding |
| 10 | ·········1·········1···············0···············0··········1185 | 10 | ·········1·········1···············0···············0··········118544··········645120··0.184··CRC64············0 |
| 11 | ··Blocks: | 11 | ··Blocks: |
| 12 | ····Stream·····Block······CompOffset····UncompOffset·······TotalSize······UncompSize··Ratio··Check | 12 | ····Stream·····Block······CompOffset····UncompOffset·······TotalSize······UncompSize··Ratio··Check |
| 13 | ·········1·········1··············12···············0··········11850 | 13 | ·········1·········1··············12···············0··········118508··········645120··0.184··CRC64 |
| Offset 6, 22 lines modified | Offset 6, 22 lines modified | ||
| 6 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/ | 6 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/ |
| 7 | -rw-r--r--···0·root·········(0)·root·········(0)···588936·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/allclasses-index.html | 7 | -rw-r--r--···0·root·········(0)·root·········(0)···588936·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/allclasses-index.html |
| 8 | -rw-r--r--···0·root·········(0)·root·········(0)····27769·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/allpackages-index.html | 8 | -rw-r--r--···0·root·········(0)·root·········(0)····27769·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/allpackages-index.html |
| 9 | -rw-r--r--···0·root·········(0)·root·········(0)···460903·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/constant-values.html | 9 | -rw-r--r--···0·root·········(0)·root·········(0)···460903·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/constant-values.html |
| 10 | -rw-r--r--···0·root·········(0)·root·········(0)····39572·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/deprecated-list.html | 10 | -rw-r--r--···0·root·········(0)·root·········(0)····39572·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/deprecated-list.html |
| 11 | -rw-r--r--···0·root·········(0)·root·········(0)·····2568·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/element-list | 11 | -rw-r--r--···0·root·········(0)·root·········(0)·····2568·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/element-list |
| 12 | -rw-r--r--···0·root·········(0)·root·········(0)····10486·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/help-doc.html | 12 | -rw-r--r--···0·root·········(0)·root·········(0)····10486·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/help-doc.html |
| 13 | -rw-r--r--···0·root·········(0)·root·········(0)··5205 | 13 | -rw-r--r--···0·root·········(0)·root·········(0)··5205421·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/index-all.html |
| 14 | -rw-r--r--···0·root·········(0)·root·········(0)····36274·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/index.html | 14 | -rw-r--r--···0·root·········(0)·root·········(0)····36274·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/index.html |
| 15 | -rw-r--r--···0·root·········(0)·root·········(0)·····1498·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/jquery-ui.overrides.css | 15 | -rw-r--r--···0·root·········(0)·root·········(0)·····1498·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/jquery-ui.overrides.css |
| 16 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/ | 16 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/ |
| 17 | -rw-r--r--···0·root·········(0)·root·········(0)·····1522·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/ASSEMBLY_EXCEPTION | 17 | -rw-r--r--···0·root·········(0)·root·········(0)·····1522·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/ASSEMBLY_EXCEPTION |
| 18 | -rw-r--r--···0·root·········(0)·root·········(0)·····2936·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/jquery.md | 18 | -rw-r--r--···0·root·········(0)·root·········(0)·····2936·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/jquery.md |
| 19 | -rw-r--r--···0·root·········(0)·root·········(0)·····1870·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/jqueryUI.md | 19 | -rw-r--r--···0·root·········(0)·root·········(0)·····1870·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/jqueryUI.md |
| 20 | -rw-r--r--···0·root·········(0)·root·········(0)··1398 | 20 | -rw-r--r--···0·root·········(0)·root·········(0)··1398972·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/member-search-index.js |
| 21 | -rw-r--r--···0·root·········(0)·root·········(0)·······45·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/module-search-index.js | 21 | -rw-r--r--···0·root·········(0)·root·········(0)·······45·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/module-search-index.js |
| 22 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/ | 22 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/ |
| 23 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/ | 23 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/ |
| 24 | -rw-r--r--···0·root·········(0)·root·········(0)····10002·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/App.html | 24 | -rw-r--r--···0·root·········(0)·root·········(0)····10002·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/App.html |
| 25 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/bibliography/ | 25 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/bibliography/ |
| 26 | -rw-r--r--···0·root·········(0)·root·········(0)····34030·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/bibliography/BibRef.html | 26 | -rw-r--r--···0·root·········(0)·root·········(0)····34030·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/bibliography/BibRef.html |
| 27 | -rw-r--r--···0·root·········(0)·root·········(0)····14355·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/bibliography/BibRefException.html | 27 | -rw-r--r--···0·root·········(0)·root·········(0)····14355·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/bibliography/BibRefException.html |
| Offset 1559, 15 lines modified | Offset 1559, 15 lines modified | ||
| 1559 | <div·class="block">add·a·search·pattern·to·the·searches·to·be·conducted | 1559 | <div·class="block">add·a·search·pattern·to·the·searches·to·be·conducted |
| 1560 | ·by·this·object.</div> | 1560 | ·by·this·object.</div> |
| 1561 | </dd> | 1561 | </dd> |
| 1562 | <dt><a·href="org/biojava/stats/svm/DiagonalAddKernel.html#addPos(java.lang.Object)"·class="member-name-link">addPos(Object)</a>·-·Method·in·class·org.biojava.stats.svm.<a·href="org/biojava/stats/svm/DiagonalAddKernel.html"·title="class·in·org.biojava.stats.svm">DiagonalAddKernel</a></dt> | 1562 | <dt><a·href="org/biojava/stats/svm/DiagonalAddKernel.html#addPos(java.lang.Object)"·class="member-name-link">addPos(Object)</a>·-·Method·in·class·org.biojava.stats.svm.<a·href="org/biojava/stats/svm/DiagonalAddKernel.html"·title="class·in·org.biojava.stats.svm">DiagonalAddKernel</a></dt> |
| 1563 | <dd> </dd> | 1563 | <dd> </dd> |
| 1564 | <dt><a·href="org/biojava/bio/seq/io/agave/AGAVEMapLocation.html#addPosition(org.biojava.bio.seq.io.agave.AGAVEMapPosition)"·class="member-name-link">addPosition(AGAVEMapPosition)</a>·-·Method·in·class·org.biojava.bio.seq.io.agave.<a·href="org/biojava/bio/seq/io/agave/AGAVEMapLocation.html"·title="class·in·org.biojava.bio.seq.io.agave">AGAVEMapLocation</a></dt> | 1564 | <dt><a·href="org/biojava/bio/seq/io/agave/AGAVEMapLocation.html#addPosition(org.biojava.bio.seq.io.agave.AGAVEMapPosition)"·class="member-name-link">addPosition(AGAVEMapPosition)</a>·-·Method·in·class·org.biojava.bio.seq.io.agave.<a·href="org/biojava/bio/seq/io/agave/AGAVEMapLocation.html"·title="class·in·org.biojava.bio.seq.io.agave">AGAVEMapLocation</a></dt> |
| 1565 | <dd> </dd> | 1565 | <dd> </dd> |
| 1566 | <dt><a·href="org/biojava/bio/program/sax/ | 1566 | <dt><a·href="org/biojava/bio/program/sax/FastaSequenceSAXParser.html#addPrefixMapping(java.lang.String,java.lang.String)"·class="member-name-link">addPrefixMapping(String,·String)</a>·-·Method·in·class·org.biojava.bio.program.sax.<a·href="org/biojava/bio/program/sax/FastaSequenceSAXParser.html"·t[·...·truncated·by·diffoscope;·len:·56,·SHA:·519ad08f90886f48e0fef61a599d73c1913f2eb6987a50b2845612963a63483a·...·]eSAXParser</a></dt> |
| 1567 | <dd> | 1567 | <dd> |
| 1568 | <div·class="block">Adds·a·namespace·prefix·to·URI·mapping·as·(key,value)·pairs.</div> | 1568 | <div·class="block">Adds·a·namespace·prefix·to·URI·mapping·as·(key,value)·pairs.</div> |
| 1569 | </dd> | 1569 | </dd> |
| 1570 | <dt><a·href="org/biojava/bio/seq/io/agave/AGAVERelatedAnnot.html#addProp(org.biojava.bio.seq.io.agave.AGAVEProperty)"·class="member-name-link">addProp(AGAVEProperty)</a>·-·Method·in·class·org.biojava.bio.seq.io.agave.<a·href="org/biojava/bio/seq/io/agave/AGAVERelatedAnnot.html"·title="class·in·org.biojava.bio.seq.io.agave">AGAVERelatedAnnot</a></dt> | 1570 | <dt><a·href="org/biojava/bio/seq/io/agave/AGAVERelatedAnnot.html#addProp(org.biojava.bio.seq.io.agave.AGAVEProperty)"·class="member-name-link">addProp(AGAVEProperty)</a>·-·Method·in·class·org.biojava.bio.seq.io.agave.<a·href="org/biojava/bio/seq/io/agave/AGAVERelatedAnnot.html"·title="class·in·org.biojava.bio.seq.io.agave">AGAVERelatedAnnot</a></dt> |
| 1571 | <dd> </dd> | 1571 | <dd> </dd> |
| 1572 | <dt><a·href="org/biojava/bio/seq/io/agave/AGAVEXref.html#addProp(org.biojava.bio.seq.io.agave.AGAVEProperty)"·class="member-name-link">addProp(AGAVEProperty)</a>·-·Method·in·class·org.biojava.bio.seq.io.agave.<a·href="org/biojava/bio/seq/io/agave/AGAVEXref.html"·title="class·in·org.biojava.bio.seq.io.agave">AGAVEXref</a></dt> | 1572 | <dt><a·href="org/biojava/bio/seq/io/agave/AGAVEXref.html#addProp(org.biojava.bio.seq.io.agave.AGAVEProperty)"·class="member-name-link">addProp(AGAVEProperty)</a>·-·Method·in·class·org.biojava.bio.seq.io.agave.<a·href="org/biojava/bio/seq/io/agave/AGAVEXref.html"·title="class·in·org.biojava.bio.seq.io.agave">AGAVEXref</a></dt> |
| 1573 | <dd> </dd> | 1573 | <dd> </dd> |
| Offset 3017, 21 lines modified | Offset 3017, 21 lines modified | ||
| 3017 | <dd> | 3017 | <dd> |
| 3018 | <div·class="block">Create·a·bean·from·an·XML·file,·then·attempt·to·enter·it.</div> | 3018 | <div·class="block">Create·a·bean·from·an·XML·file,·then·attempt·to·enter·it.</div> |
| 3019 | </dd> | 3019 | </dd> |
| 3020 | <dt><a·href="org/biojava/utils/xml/AppBeanRunner.html#%3Cinit%3E()"·class="member-name-link">AppBeanRunner()</a>·-·Constructor·for·class·org.biojava.utils.xml.<a·href="org/biojava/utils/xml/AppBeanRunner.html"·title="class·in·org.biojava.utils.xml">AppBeanRunner</a></dt> | 3020 | <dt><a·href="org/biojava/utils/xml/AppBeanRunner.html#%3Cinit%3E()"·class="member-name-link">AppBeanRunner()</a>·-·Constructor·for·class·org.biojava.utils.xml.<a·href="org/biojava/utils/xml/AppBeanRunner.html"·title="class·in·org.biojava.utils.xml">AppBeanRunner</a></dt> |
| 3021 | <dd> </dd> | 3021 | <dd> </dd> |
| 3022 | <dt><a·href="org/biojava/utils/automata/NfaSubModel.html#append(org.biojava.utils.automata.NfaSubModel)"·class="member-name-link">append(NfaSubModel)</a>·-·Method·in·class·org.biojava.utils.automata.<a·href="org/biojava/utils/automata/NfaSubModel.html"·title="class·in·org.biojava.utils.automata">NfaSubModel</a></dt> | 3022 | <dt><a·href="org/biojava/utils/automata/NfaSubModel.html#append(org.biojava.utils.automata.NfaSubModel)"·class="member-name-link">append(NfaSubModel)</a>·-·Method·in·class·org.biojava.utils.automata.<a·href="org/biojava/utils/automata/NfaSubModel.html"·title="class·in·org.biojava.utils.automata">NfaSubModel</a></dt> |
| 3023 | <dd> </dd> | 3023 | <dd> </dd> |
| 3024 | <dt><a·href="org/biojava/bio/program/fastq/ | 3024 | <dt><a·href="org/biojava/bio/program/fastq/SolexaFastqWriter.html#append(T,java.lang.Iterable)"·class="member-name-link">append(T,·Iterable<Fastq>)</a>·-·Method·in·class·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/SolexaFastqWriter.html"·title="class·in·org.biojava.bi[·...·truncated·by·diffoscope;·len:·22,·SHA:·0a9d5d9a4c5821abe098fc9d062dd908a75e44a52f7bacd586fd3d78af511088·...·]aFastqWriter</a></dt> |
| 3025 | <dd> </dd> | 3025 | <dd> </dd> |
| 3026 | <dt><a·href="org/biojava/bio/program/fastq/FastqWriter.html#append(T,java.lang.Iterable)"·class="member-name-link">append(T,·Iterable<Fastq>)</a>·-·Method·in·interface·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/FastqWriter.html"·title="interface·in·org.biojava.bio.program.fastq">FastqWriter</a></dt> | 3026 | <dt><a·href="org/biojava/bio/program/fastq/FastqWriter.html#append(T,java.lang.Iterable)"·class="member-name-link">append(T,·Iterable<Fastq>)</a>·-·Method·in·interface·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/FastqWriter.html"·title="interface·in·org.biojava.bio.program.fastq">FastqWriter</a></dt> |
| 3027 | <dd> | 3027 | <dd> |
| 3028 | <div·class="block">Append·the·specified·FASTQ·formatted·sequences·to·the·specified·appendable.</div> | 3028 | <div·class="block">Append·the·specified·FASTQ·formatted·sequences·to·the·specified·appendable.</div> |
| 3029 | </dd> | 3029 | </dd> |
| 3030 | <dt><a·href="org/biojava/bio/program/fastq/ | 3030 | <dt><a·href="org/biojava/bio/program/fastq/SolexaFastqWriter.html#append(T,org.biojava.bio.program.fastq.Fastq...)"·class="member-name-link">append(T,·Fastq...)</a>·-·Method·in·class·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/SolexaFastqWriter.html"·title="class·in·org.bio[·...·truncated·by·diffoscope;·len:·29,·SHA:·6064ff26faabcd0a2dd8291bd1fb621527c245a6681dadafa861b820aa8fbde3·...·]aFastqWriter</a></dt> |
| 3031 | <dd> </dd> | 3031 | <dd> </dd> |
| 3032 | <dt><a·href="org/biojava/bio/program/fastq/FastqWriter.html#append(T,org.biojava.bio.program.fastq.Fastq...)"·class="member-name-link">append(T,·Fastq...)</a>·-·Method·in·interface·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/FastqWriter.html"·title="interface·in·org.biojava.bio.program.fastq">FastqWriter</a></dt> | 3032 | <dt><a·href="org/biojava/bio/program/fastq/FastqWriter.html#append(T,org.biojava.bio.program.fastq.Fastq...)"·class="member-name-link">append(T,·Fastq...)</a>·-·Method·in·interface·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/FastqWriter.html"·title="interface·in·org.biojava.bio.program.fastq">FastqWriter</a></dt> |
| 3033 | <dd> | 3033 | <dd> |
| 3034 | <div·class="block">Append·the·specified·FASTQ·formatted·sequences·to·the·specified·appendable.</div> | 3034 | <div·class="block">Append·the·specified·FASTQ·formatted·sequences·to·the·specified·appendable.</div> |
| 3035 | </dd> | 3035 | </dd> |
| 3036 | <dt><a·href="org/biojavax/bio/phylo/io/nexus/CharactersBlock.html#appendMatrixData(java.lang.String,java.lang.Object)"·class="member-name-link">appendMatrixData(String,·Object)</a>·-·Method·in·class·org.biojavax.bio.phylo.io.nexus.<a·href="org/biojavax/bio/phylo/io/nexus/CharactersBlock.html"·title="class·in·org.biojavax.bio.phylo.io.nexus">CharactersBlock</a></dt> | 3036 | <dt><a·href="org/biojavax/bio/phylo/io/nexus/CharactersBlock.html#appendMatrixData(java.lang.String,java.lang.Object)"·class="member-name-link">appendMatrixData(String,·Object)</a>·-·Method·in·class·org.biojavax.bio.phylo.io.nexus.<a·href="org/biojavax/bio/phylo/io/nexus/CharactersBlock.html"·title="class·in·org.biojavax.bio.phylo.io.nexus">CharactersBlock</a></dt> |
| 3037 | <dd> </dd> | 3037 | <dd> </dd> |
| Offset 5096, 15 lines modified | Offset 5096, 15 lines modified | ||
| 5096 | <dd> | 5096 | <dd> |
| 5097 | <div·class="block">A·listener·that·remembers·the·ChangeEvent·of·the·last·change.</div> | 5097 | <div·class="block">A·listener·that·remembers·the·ChangeEvent·of·the·last·change.</div> |
| 5098 | </dd> | 5098 | </dd> |
| 5099 | <dt><a·href="org/biojava/utils/ChangeListener.LoggingListener.html"·class="type-name-link"·title="class·in·org.biojava.utils">ChangeListener.LoggingListener</a>·-·Class·in·<a·href="org/biojava/utils/package-summary.html">org.biojava.utils</a></dt> | 5099 | <dt><a·href="org/biojava/utils/ChangeListener.LoggingListener.html"·class="type-name-link"·title="class·in·org.biojava.utils">ChangeListener.LoggingListener</a>·-·Class·in·<a·href="org/biojava/utils/package-summary.html">org.biojava.utils</a></dt> |
| 5100 | <dd> | 5100 | <dd> |
| 5101 | <div·class="block">A·listener·that·writes·information·about·the·event·stream·to·a·PrintStream.</div> | 5101 | <div·class="block">A·listener·that·writes·information·about·the·event·stream·to·a·PrintStream.</div> |
| 5102 | </dd> | 5102 | </dd> |
| 5103 | <dt><a·href="org/biojava/bio/program/sax/ | 5103 | <dt><a·href="org/biojava/bio/program/sax/FastaSequenceSAXParser.html#changeState(int)"·class="member-name-link">changeState(int)</a>·-·Method·in·class·org.biojava.bio.program.sax.<a·href="org/biojava/bio/program/sax/FastaSequenceSAXParser.html"·title="class·in·org.biojava.bio.program.sax">FastaSe[·...·truncated·by·diffoscope;·len:·5,·SHA:·578c135bd154d91392867229afa0847f65fea4197bd5f21926145ae47bc25a81·...·]eSAXParser</a></dt> |
| 5104 | <dd> | 5104 | <dd> |
| 5105 | <div·class="block">Centralise·chaining·of·iState·field·to·help | 5105 | <div·class="block">Centralise·chaining·of·iState·field·to·help |
| 5106 | ·with·debugging.</div> | 5106 | ·with·debugging.</div> |
| 5107 | </dd> | 5107 | </dd> |
| 5108 | <dt><a·href="org/biojava/utils/ChangeForwarder.html#changeSupport()"·class="member-name-link">changeSupport()</a>·-·Method·in·class·org.biojava.utils.<a·href="org/biojava/utils/ChangeForwarder.html"·title="class·in·org.biojava.utils">ChangeForwarder</a></dt> | 5108 | <dt><a·href="org/biojava/utils/ChangeForwarder.html#changeSupport()"·class="member-name-link">changeSupport()</a>·-·Method·in·class·org.biojava.utils.<a·href="org/biojava/utils/ChangeForwarder.html"·title="class·in·org.biojava.utils">ChangeForwarder</a></dt> |
| 5109 | <dd> | 5109 | <dd> |
| 5110 | <div·class="block">Return·the·underlying·<code>ChangeSupport</code>·instance·that·can·be·used·to | 5110 | <div·class="block">Return·the·underlying·<code>ChangeSupport</code>·instance·that·can·be·used·to |
| Offset 5221, 15 lines modified | Offset 5221, 15 lines modified | ||
| 5221 | </dd> | 5221 | </dd> |
| 5222 | <dt><a·href="org/biojava/bio/seq/io/SymbolTokenization.html#CHARACTER"·class="member-name-link">CHARACTER</a>·-·Static·variable·in·interface·org.biojava.bio.seq.io.<a·href="org/biojava/bio/seq/io/SymbolTokenization.html"·title="interface·in·org.biojava.bio.seq.io">SymbolTokenization</a></dt> | 5222 | <dt><a·href="org/biojava/bio/seq/io/SymbolTokenization.html#CHARACTER"·class="member-name-link">CHARACTER</a>·-·Static·variable·in·interface·org.biojava.bio.seq.io.<a·href="org/biojava/bio/seq/io/SymbolTokenization.html"·title="interface·in·org.biojava.bio.seq.io">SymbolTokenization</a></dt> |
| 5223 | <dd> </dd> | 5223 | <dd> </dd> |
| 5224 | <dt><a·href="org/biojava/bio/program/blast2html/Blast2HTMLHandler.html#characters(char%5B%5D,int,int)"·class="member-name-link">characters(char[],·int,·int)</a>·-·Method·in·class·org.biojava.bio.program.blast2html.<a·href="org/biojava/bio/program/blast2html/Blast2HTMLHandler.html"·title="class·in·org.biojava.bio.program.blast2html">Blast2HTMLHandler</a></dt> | 5224 | <dt><a·href="org/biojava/bio/program/blast2html/Blast2HTMLHandler.html#characters(char%5B%5D,int,int)"·class="member-name-link">characters(char[],·int,·int)</a>·-·Method·in·class·org.biojava.bio.program.blast2html.<a·href="org/biojava/bio/program/blast2html/Blast2HTMLHandler.html"·title="class·in·org.biojava.bio.program.blast2html">Blast2HTMLHandler</a></dt> |
| 5225 | <dd> | 5225 | <dd> |
| 5226 | <div·class="block">Describe·<code>characters</code>·method·here.</div> | 5226 | <div·class="block">Describe·<code>characters</code>·method·here.</div> |
| 5227 | </dd> | 5227 | </dd> |
| 5228 | <dt><a·href="org/biojava/bio/program/sax/ | 5228 | <dt><a·href="org/biojava/bio/program/sax/FastaSequenceSAXParser.html#characters(char%5B%5D,int,int)"·class="member-name-link">characters(char[],·int,·int)</a>·-·Method·in·class·org.biojava.bio.program.sax.<a·href="org/biojava/bio/program/sax/FastaSequenceSAXParser.html"·title="class·in·org.biojav[·...·truncated·by·diffoscope;·len:·31,·SHA:·10742abc481c91d852e79e5ac915c4fc200e0bddc9f9f4d7e0debde07bf9269e·...·]eSAXParser</a></dt> |
| 5229 | <dd> | 5229 | <dd> |
| 5230 | <div·class="block">Utility·method·to·centralize·the·sending·of·a·SAX·characters | 5230 | <div·class="block">Utility·method·to·centralize·the·sending·of·a·SAX·characters |
| 5231 | ·message·a·document·handler.</div> | 5231 | ·message·a·document·handler.</div> |
| 5232 | </dd> | 5232 | </dd> |
| 5233 | <dt><a·href="org/biojava/bio/program/ssbind/SeqSimilarityAdapter.html#characters(char%5B%5D,int,int)"·class="member-name-link">characters(char[],·int,·int)</a>·-·Method·in·class·org.biojava.bio.program.ssbind.<a·href="org/biojava/bio/program/ssbind/SeqSimilarityAdapter.html"·title="class·in·org.biojava.bio.program.ssbind">SeqSimilarityAdapter</a></dt> | 5233 | <dt><a·href="org/biojava/bio/program/ssbind/SeqSimilarityAdapter.html#characters(char%5B%5D,int,int)"·class="member-name-link">characters(char[],·int,·int)</a>·-·Method·in·class·org.biojava.bio.program.ssbind.<a·href="org/biojava/bio/program/ssbind/SeqSimilarityAdapter.html"·title="class·in·org.biojava.bio.program.ssbind">SeqSimilarityAdapter</a></dt> |
| 5234 | <dd> </dd> | 5234 | <dd> </dd> |
| 5235 | <dt><a·href="org/biojava/bio/program/xml/SimpleXMLEmitter.html#characters(char%5B%5D,int,int)"·class="member-name-link">characters(char[],·int,·int)</a>·-·Method·in·class·org.biojava.bio.program.xml.<a·href="org/biojava/bio/program/xml/SimpleXMLEmitter.html"·title="class·in·org.biojava.bio.program.xml">SimpleXMLEmitter</a></dt> | 5235 | <dt><a·href="org/biojava/bio/program/xml/SimpleXMLEmitter.html#characters(char%5B%5D,int,int)"·class="member-name-link">characters(char[],·int,·int)</a>·-·Method·in·class·org.biojava.bio.program.xml.<a·href="org/biojava/bio/program/xml/SimpleXMLEmitter.html"·title="class·in·org.biojava.bio.program.xml">SimpleXMLEmitter</a></dt> |
| Offset 8350, 15 lines modified | Offset 8350, 15 lines modified | ||
| 8350 | <dd> </dd> | 8350 | <dd> </dd> |
| 8351 | <dt><a·href="org/biojava/bio/program/tagvalue/TagDropper.html#doRetain()"·class="member-name-link">doRetain()</a>·-·Method·in·class·org.biojava.bio.program.tagvalue.<a·href="org/biojava/bio/program/tagvalue/TagDropper.html"·title="class·in·org.biojava.bio.program.tagvalue">TagDropper</a></dt> | 8351 | <dt><a·href="org/biojava/bio/program/tagvalue/TagDropper.html#doRetain()"·class="member-name-link">doRetain()</a>·-·Method·in·class·org.biojava.bio.program.tagvalue.<a·href="org/biojava/bio/program/tagvalue/TagDropper.html"·title="class·in·org.biojava.bio.program.tagvalue">TagDropper</a></dt> |
| 8352 | <dd> | 8352 | <dd> |
| 8353 | <div·class="block">Find·out·if·known·tags·are·retained·or·dropped.</div> | 8353 | <div·class="block">Find·out·if·known·tags·are·retained·or·dropped.</div> |
| 8354 | </dd> | 8354 | </dd> |
| 8355 | <dt><a·href="org/biojava/bio/gui/sequence/AbstractPeptideDigestRenderer.html#doSortPeptides()"·class="member-name-link">doSortPeptides()</a>·-·Method·in·class·org.biojava.bio.gui.sequence.<a·href="org/biojava/bio/gui/sequence/AbstractPeptideDigestRenderer.html"·title="class·in·org.biojava.bio.gui.sequence">AbstractPeptideDigestRenderer</a></dt> | 8355 | <dt><a·href="org/biojava/bio/gui/sequence/AbstractPeptideDigestRenderer.html#doSortPeptides()"·class="member-name-link">doSortPeptides()</a>·-·Method·in·class·org.biojava.bio.gui.sequence.<a·href="org/biojava/bio/gui/sequence/AbstractPeptideDigestRenderer.html"·title="class·in·org.biojava.bio.gui.sequence">AbstractPeptideDigestRenderer</a></dt> |
| 8356 | <dd> </dd> | 8356 | <dd> </dd> |
| 8357 | <dt><a·href="org/biojava/bio/symbol/Abstract | 8357 | <dt><a·href="org/biojava/bio/symbol/AbstractManyToOneTranslationTable.html#doTranslate(org.biojava.bio.symbol.Symbol)"·class="member-name-link">doTranslate(Symbol)</a>·-·Method·in·class·org.biojava.bio.symbol.<a·href="org/biojava/bio/symbol/AbstractManyToOneTranslationTable.html"·title="class·in·org[·...·truncated·by·diffoscope;·len:·37,·SHA:·befc3b5f12cc40d0e8bc5dbae6f5720ea1b11749a0db090d4fd3634a75e1f118·...·]eTranslationTable</a></dt> |
| 8358 | <dd> | 8358 | <dd> |
| 8359 | <div·class="block">this·method·is·expected·to·translate·any·symbol | 8359 | <div·class="block">this·method·is·expected·to·translate·any·symbol |
| 8360 | ·in·the·source·alphabet.</div> | 8360 | ·in·the·source·alphabet.</div> |
| 8361 | </dd> | 8361 | </dd> |
| 8362 | <dt><a·href="org/biojava/bio/symbol/SimpleManyToOneTranslationTable.html#doTranslate(org.biojava.bio.symbol.Symbol)"·class="member-name-link">doTranslate(Symbol)</a>·-·Method·in·class·org.biojava.bio.symbol.<a·href="org/biojava/bio/symbol/SimpleManyToOneTranslationTable.html"·title="class·in·org.biojava.bio.symbol">SimpleManyToOneTranslationTable</a></dt> | 8362 | <dt><a·href="org/biojava/bio/symbol/SimpleManyToOneTranslationTable.html#doTranslate(org.biojava.bio.symbol.Symbol)"·class="member-name-link">doTranslate(Symbol)</a>·-·Method·in·class·org.biojava.bio.symbol.<a·href="org/biojava/bio/symbol/SimpleManyToOneTranslationTable.html"·title="class·in·org.biojava.bio.symbol">SimpleManyToOneTranslationTable</a></dt> |
| 8363 | <dd> </dd> | 8363 | <dd> </dd> |
| 8364 | <dt><a·href="org/biojava/bio/symbol/SimpleReversibleTranslationTable.html#doTranslate(org.biojava.bio.symbol.Symbol)"·class="member-name-link">doTranslate(Symbol)</a>·-·Method·in·class·org.biojava.bio.symbol.<a·href="org/biojava/bio/symbol/SimpleReversibleTranslationTable.html"·title="class·in·org.biojava.bio.symbol">SimpleReversibleTranslationTable</a></dt> | 8364 | <dt><a·href="org/biojava/bio/symbol/SimpleReversibleTranslationTable.html#doTranslate(org.biojava.bio.symbol.Symbol)"·class="member-name-link">doTranslate(Symbol)</a>·-·Method·in·class·org.biojava.bio.symbol.<a·href="org/biojava/bio/symbol/SimpleReversibleTranslationTable.html"·title="class·in·org.biojava.bio.symbol">SimpleReversibleTranslationTable</a></dt> |
| Offset 9283, 15 lines modified | Offset 9283, 15 lines modified | ||
| 9283 | <dd> </dd> | 9283 | <dd> </dd> |
| 9284 | <dt><a·href="org/biojava/utils/stax/StAXContentHandler.html#endElement(java.lang.String,java.lang.String,java.lang.String,org.biojava.utils.stax.StAXContentHandler)"·class="member-name-link">endElement(String,·String,·String,·StAXContentHandler)</a>·-·Method·in·interface·org.biojava.utils.stax.<a·href="org/biojava/utils/stax/StAXContentHandler.html"·title="interface·in·org.biojava.utils.stax">StAXContentHandler</a></dt> | 9284 | <dt><a·href="org/biojava/utils/stax/StAXContentHandler.html#endElement(java.lang.String,java.lang.String,java.lang.String,org.biojava.utils.stax.StAXContentHandler)"·class="member-name-link">endElement(String,·String,·String,·StAXContentHandler)</a>·-·Method·in·interface·org.biojava.utils.stax.<a·href="org/biojava/utils/stax/StAXContentHandler.html"·title="interface·in·org.biojava.utils.stax">StAXContentHandler</a></dt> |
| 9285 | <dd> </dd> | 9285 | <dd> </dd> |
| 9286 | <dt><a·href="org/biojava/utils/stax/StAXContentHandlerBase.html#endElement(java.lang.String,java.lang.String,java.lang.String,org.biojava.utils.stax.StAXContentHandler)"·class="member-name-link">endElement(String,·String,·String,·StAXContentHandler)</a>·-·Method·in·class·org.biojava.utils.stax.<a·href="org/biojava/utils/stax/StAXContentHandlerBase.html"·title="class·in·org.biojava.utils.stax">StAXContentHandlerBase</a></dt> | 9286 | <dt><a·href="org/biojava/utils/stax/StAXContentHandlerBase.html#endElement(java.lang.String,java.lang.String,java.lang.String,org.biojava.utils.stax.StAXContentHandler)"·class="member-name-link">endElement(String,·String,·String,·StAXContentHandler)</a>·-·Method·in·class·org.biojava.utils.stax.<a·href="org/biojava/utils/stax/StAXContentHandlerBase.html"·title="class·in·org.biojava.utils.stax">StAXContentHandlerBase</a></dt> |
| 9287 | <dd> </dd> | 9287 | <dd> </dd> |
| 9288 | <dt><a·href="org/biojava/utils/stax/StringElementHandlerBase.html#endElement(java.lang.String,java.lang.String,java.lang.String,org.biojava.utils.stax.StAXContentHandler)"·class="member-name-link">endElement(String,·String,·String,·StAXContentHandler)</a>·-·Method·in·class·org.biojava.utils.stax.<a·href="org/biojava/utils/stax/StringElementHandlerBase.html"·title="class·in·org.biojava.utils.stax">StringElementHandlerBase</a></dt> | 9288 | <dt><a·href="org/biojava/utils/stax/StringElementHandlerBase.html#endElement(java.lang.String,java.lang.String,java.lang.String,org.biojava.utils.stax.StAXContentHandler)"·class="member-name-link">endElement(String,·String,·String,·StAXContentHandler)</a>·-·Method·in·class·org.biojava.utils.stax.<a·href="org/biojava/utils/stax/StringElementHandlerBase.html"·title="class·in·org.biojava.utils.stax">StringElementHandlerBase</a></dt> |
| 9289 | <dd> </dd> | 9289 | <dd> </dd> |
| 9290 | <dt><a·href="org/biojava/bio/program/sax/ | 9290 | <dt><a·href="org/biojava/bio/program/sax/FastaSequenceSAXParser.html#endElement(org.biojava.bio.program.sax.QName)"·class="member-name-link">endElement(QName)</a>·-·Method·in·class·org.biojava.bio.program.sax.<a·href="org/biojava/bio/program/sax/FastaSequenceSAXParser.html"·title="class·in·org.bi[·...·truncated·by·diffoscope;·len:·35,·SHA:·c9d2dcc23facb2acdfb7f572a6d0301dd10f451d1d50a0b013c87cf5ce6d6aa6·...·]eSAXParser</a></dt> |
| 9291 | <dd> | 9291 | <dd> |
| 9292 | <div·class="block">Utility·method·to·centralize·the·sending·of·a·SAX·endElement | 9292 | <div·class="block">Utility·method·to·centralize·the·sending·of·a·SAX·endElement |
| 9293 | ·message·a·document·handler.</div> | 9293 | ·message·a·document·handler.</div> |
| 9294 | </dd> | 9294 | </dd> |
| 9295 | <dt><a·href="org/biojava/bio/seq/io/agave/AGAVEBioSeqHandler.html#endElementHandler(java.lang.String,java.lang.String,java.lang.String,org.biojava.bio.seq.io.agave.StAXContentHandler)"·class="member-name-link">endElementHandler(String,·String,·String,·StAXContentHandler)</a>·-·Method·in·class·org.biojava.bio.seq.io.agave.<a·href="org/biojava/bio/seq/io/agave/AGAVEBioSeqHandler.html"·title="class·in·org.biojava.bio.seq.io.agave">AGAVEBioSeqHandler</a></dt> | 9295 | <dt><a·href="org/biojava/bio/seq/io/agave/AGAVEBioSeqHandler.html#endElementHandler(java.lang.String,java.lang.String,java.lang.String,org.biojava.bio.seq.io.agave.StAXContentHandler)"·class="member-name-link">endElementHandler(String,·String,·String,·StAXContentHandler)</a>·-·Method·in·class·org.biojava.bio.seq.io.agave.<a·href="org/biojava/bio/seq/io/agave/AGAVEBioSeqHandler.html"·title="class·in·org.biojava.bio.seq.io.agave">AGAVEBioSeqHandler</a></dt> |
| 9296 | <dd> </dd> | 9296 | <dd> </dd> |
| 9297 | <dt><a·href="org/biojava/bio/seq/io/agave/AGAVEChromosomeHandler.html#endElementHandler(java.lang.String,java.lang.String,java.lang.String,org.biojava.bio.seq.io.agave.StAXContentHandler)"·class="member-name-link">endElementHandler(String,·String,·String,·StAXContentHandler)</a>·-·Method·in·class·org.biojava.bio.seq.io.agave.<a·href="org/biojava/bio/seq/io/agave/AGAVEChromosomeHandler.html"·title="class·in·org.biojava.bio.seq.io.agave">AGAVEChromosomeHandler</a></dt> | 9297 | <dt><a·href="org/biojava/bio/seq/io/agave/AGAVEChromosomeHandler.html#endElementHandler(java.lang.String,java.lang.String,java.lang.String,org.biojava.bio.seq.io.agave.StAXContentHandler)"·class="member-name-link">endElementHandler(String,·String,·String,·StAXContentHandler)</a>·-·Method·in·class·org.biojava.bio.seq.io.agave.<a·href="org/biojava/bio/seq/io/agave/AGAVEChromosomeHandler.html"·title="class·in·org.biojava.bio.seq.io.agave">AGAVEChromosomeHandler</a></dt> |
| Offset 11725, 15 lines modified | Offset 11725, 15 lines modified | ||
| 11725 | </dd> | 11725 | </dd> |
| 11726 | <dt><a·href="org/biojava/bio/seq/io/SwissprotFileFormer.html#formatLocation(java.lang.StringBuffer,org.biojava.bio.symbol.Location)"·class="member-name-link">formatLocation(StringBuffer,·Location)</a>·-·Method·in·class·org.biojava.bio.seq.io.<a·href="org/biojava/bio/seq/io/SwissprotFileFormer.html"·title="class·in·org.biojava.bio.seq.io">SwissprotFileFormer</a></dt> | 11726 | <dt><a·href="org/biojava/bio/seq/io/SwissprotFileFormer.html#formatLocation(java.lang.StringBuffer,org.biojava.bio.symbol.Location)"·class="member-name-link">formatLocation(StringBuffer,·Location)</a>·-·Method·in·class·org.biojava.bio.seq.io.<a·href="org/biojava/bio/seq/io/SwissprotFileFormer.html"·title="class·in·org.biojava.bio.seq.io">SwissprotFileFormer</a></dt> |
| 11727 | <dd> | 11727 | <dd> |
| 11728 | <div·class="deprecation-block"><span·class="deprecated-label">Deprecated.</span></div> | 11728 | <div·class="deprecation-block"><span·class="deprecated-label">Deprecated.</span></div> |
| 11729 | <div·class="block"><code>formatLocation</code>·creates·a·String·representation·of | 11729 | <div·class="block"><code>formatLocation</code>·creates·a·String·representation·of |
| 11730 | ·a·<code>Location</code>.</div> | 11730 | ·a·<code>Location</code>.</div> |
| 11731 | </dd> | 11731 | </dd> |
| 11732 | <dt><a·href="org/biojava/bio/seq/io/ | 11732 | <dt><a·href="org/biojava/bio/seq/io/ProteinRefSeqFileFormer.html#formatLocation(java.lang.StringBuffer,org.biojava.bio.symbol.Location,org.biojava.bio.seq.StrandedFeature.Strand)"·class="member-name-link">formatLocation(StringBuffer,·Location,·StrandedFeature.Strand)</a>·-·Method·in·class·or[·...·truncated·by·diffoscope;·len:·136,·SHA:·a7970d1c347eeb36de336d7295a0dc5107dea8857b9e672693d17131e36f2f6d·...·]FileFormer</a></dt> |
| 11733 | <dd> | 11733 | <dd> |
| 11734 | <div·class="block"><code>formatLocation</code>·creates·an·EMBL/Genbank·style | 11734 | <div·class="block"><code>formatLocation</code>·creates·an·EMBL/Genbank·style |
| 11735 | ·representation·of·a·<code>Location</code>.</div> | 11735 | ·representation·of·a·<code>Location</code>.</div> |
| 11736 | </dd> | 11736 | </dd> |
| 11737 | <dt><a·href="org/biojava/bio/seq/io/SeqFileFormer.html#formatLocation(java.lang.StringBuffer,org.biojava.bio.symbol.Location,org.biojava.bio.seq.StrandedFeature.Strand)"·class="member-name-link">formatLocation(StringBuffer,·Location,·StrandedFeature.Strand)</a>·-·Method·in·interface·org.biojava.bio.seq.io.<a·href="org/biojava/bio/seq/io/SeqFileFormer.html"·title="interface·in·org.biojava.bio.seq.io">SeqFileFormer</a></dt> | 11737 | <dt><a·href="org/biojava/bio/seq/io/SeqFileFormer.html#formatLocation(java.lang.StringBuffer,org.biojava.bio.symbol.Location,org.biojava.bio.seq.StrandedFeature.Strand)"·class="member-name-link">formatLocation(StringBuffer,·Location,·StrandedFeature.Strand)</a>·-·Method·in·interface·org.biojava.bio.seq.io.<a·href="org/biojava/bio/seq/io/SeqFileFormer.html"·title="interface·in·org.biojava.bio.seq.io">SeqFileFormer</a></dt> |
| 11738 | <dd> | 11738 | <dd> |
| 11739 | <div·class="deprecation-block"><span·class="deprecated-label">Deprecated.</span></div> | 11739 | <div·class="deprecation-block"><span·class="deprecated-label">Deprecated.</span></div> |
| Offset 11742, 29 lines modified | Offset 11742, 29 lines modified | ||
| 11742 | </dd> | 11742 | </dd> |
| 11743 | <dt><a·href="org/biojava/bio/seq/io/SwissprotFileFormer.html#formatLocation(java.lang.StringBuffer,org.biojava.bio.symbol.Location,org.biojava.bio.seq.StrandedFeature.Strand)"·class="member-name-link">formatLocation(StringBuffer,·Location,·StrandedFeature.Strand)</a>·-·Method·in·class·org.biojava.bio.seq.io.<a·href="org/biojava/bio/seq/io/SwissprotFileFormer.html"·title="class·in·org.biojava.bio.seq.io">SwissprotFileFormer</a></dt> | 11743 | <dt><a·href="org/biojava/bio/seq/io/SwissprotFileFormer.html#formatLocation(java.lang.StringBuffer,org.biojava.bio.symbol.Location,org.biojava.bio.seq.StrandedFeature.Strand)"·class="member-name-link">formatLocation(StringBuffer,·Location,·StrandedFeature.Strand)</a>·-·Method·in·class·org.biojava.bio.seq.io.<a·href="org/biojava/bio/seq/io/SwissprotFileFormer.html"·title="class·in·org.biojava.bio.seq.io">SwissprotFileFormer</a></dt> |
| 11744 | <dd> | 11744 | <dd> |
| 11745 | <div·class="deprecation-block"><span·class="deprecated-label">Deprecated.</span></div> | 11745 | <div·class="deprecation-block"><span·class="deprecated-label">Deprecated.</span></div> |
| 11746 | <div·class="block"><code>formatLocation</code>·creates·a·String·representation·of | 11746 | <div·class="block"><code>formatLocation</code>·creates·a·String·representation·of |
| 11747 | ·a·<code>Location</code>.</div> | 11747 | ·a·<code>Location</code>.</div> |
| 11748 | </dd> | 11748 | </dd> |
| 11749 | <dt><a·href="org/biojava/bio/seq/io/ | 11749 | <dt><a·href="org/biojava/bio/seq/io/ProteinRefSeqFileFormer.html#formatLocation(org.biojava.bio.seq.Feature)"·class="member-name-link">formatLocation(Feature)</a>·-·Method·in·class·org.biojava.bio.seq.io.<a·href="org/biojava/bio/seq/io/ProteinRefSeqFileFormer.html"·title="class·in·org.biojav[·...·truncated·by·diffoscope;·len:·27,·SHA:·fa5b48983d6c2e3e1b354e66ebb82a4552a42d2422270f1fc91d3c1f3bcf239e·...·]FileFormer</a></dt> |
| 11750 | <dd> | 11750 | <dd> |
| Max diff block lines reached; 67257/86084 bytes (78.13%) of diff not shown. | |||
| Offset 1454, 15 lines modified | Offset 1454, 15 lines modified | ||
| 1454 | ······add·a·search·pattern·to·the·searches·to·be·conducted·by·this·object. | 1454 | ······add·a·search·pattern·to·the·searches·to·be·conducted·by·this·object. |
| 1455 | ··_\x8a_\x8d_\x8d_\x8P_\x8o_\x8s_\x8(_\x8O_\x8b_\x8j_\x8e_\x8c_\x8t_\x8)·-·Method·in·class·org.biojava.stats.svm._\x8D_\x8i_\x8a_\x8g_\x8o_\x8n_\x8a_\x8l_\x8A_\x8d_\x8d_\x8K_\x8e_\x8r_\x8n_\x8e_\x8l | 1455 | ··_\x8a_\x8d_\x8d_\x8P_\x8o_\x8s_\x8(_\x8O_\x8b_\x8j_\x8e_\x8c_\x8t_\x8)·-·Method·in·class·org.biojava.stats.svm._\x8D_\x8i_\x8a_\x8g_\x8o_\x8n_\x8a_\x8l_\x8A_\x8d_\x8d_\x8K_\x8e_\x8r_\x8n_\x8e_\x8l |
| 1456 | ······ | 1456 | ······ |
| 1457 | ··_\x8a_\x8d_\x8d_\x8P_\x8o_\x8s_\x8i_\x8t_\x8i_\x8o_\x8n_\x8(_\x8A_\x8G_\x8A_\x8V_\x8E_\x8M_\x8a_\x8p_\x8P_\x8o_\x8s_\x8i_\x8t_\x8i_\x8o_\x8n_\x8)·-·Method·in·class | 1457 | ··_\x8a_\x8d_\x8d_\x8P_\x8o_\x8s_\x8i_\x8t_\x8i_\x8o_\x8n_\x8(_\x8A_\x8G_\x8A_\x8V_\x8E_\x8M_\x8a_\x8p_\x8P_\x8o_\x8s_\x8i_\x8t_\x8i_\x8o_\x8n_\x8)·-·Method·in·class |
| 1458 | ··org.biojava.bio.seq.io.agave._\x8A_\x8G_\x8A_\x8V_\x8E_\x8M_\x8a_\x8p_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n | 1458 | ··org.biojava.bio.seq.io.agave._\x8A_\x8G_\x8A_\x8V_\x8E_\x8M_\x8a_\x8p_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n |
| 1459 | ······ | 1459 | ······ |
| 1460 | ··_\x8a_\x8d_\x8d_\x8P_\x8r_\x8e_\x8f_\x8i_\x8x_\x8M_\x8a_\x8p_\x8p_\x8i_\x8n_\x8g_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8)·-·Method·in·class | 1460 | ··_\x8a_\x8d_\x8d_\x8P_\x8r_\x8e_\x8f_\x8i_\x8x_\x8M_\x8a_\x8p_\x8p_\x8i_\x8n_\x8g_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8)·-·Method·in·class |
| 1461 | ··org.biojava.bio.program.sax._\x8 | 1461 | ··org.biojava.bio.program.sax._\x8F_.a_.s_.t_.a_.S_.e_.q_.u_.e_.n_.c_\x8e_\x8S_\x8A_\x8X_\x8P_\x8a_\x8r_\x8s_\x8e_\x8r |
| 1462 | ······Adds·a·namespace·prefix·to·URI·mapping·as·(key,value)·pairs. | 1462 | ······Adds·a·namespace·prefix·to·URI·mapping·as·(key,value)·pairs. |
| 1463 | ··_\x8a_\x8d_\x8d_\x8P_\x8r_\x8o_\x8p_\x8(_\x8A_\x8G_\x8A_\x8V_\x8E_\x8P_\x8r_\x8o_\x8p_\x8e_\x8r_\x8t_\x8y_\x8)·-·Method·in·class | 1463 | ··_\x8a_\x8d_\x8d_\x8P_\x8r_\x8o_\x8p_\x8(_\x8A_\x8G_\x8A_\x8V_\x8E_\x8P_\x8r_\x8o_\x8p_\x8e_\x8r_\x8t_\x8y_\x8)·-·Method·in·class |
| 1464 | ··org.biojava.bio.seq.io.agave._\x8A_\x8G_\x8A_\x8V_\x8E_\x8R_\x8e_\x8l_\x8a_\x8t_\x8e_\x8d_\x8A_\x8n_\x8n_\x8o_\x8t | 1464 | ··org.biojava.bio.seq.io.agave._\x8A_\x8G_\x8A_\x8V_\x8E_\x8R_\x8e_\x8l_\x8a_\x8t_\x8e_\x8d_\x8A_\x8n_\x8n_\x8o_\x8t |
| 1465 | ······ | 1465 | ······ |
| 1466 | ··_\x8a_\x8d_\x8d_\x8P_\x8r_\x8o_\x8p_\x8(_\x8A_\x8G_\x8A_\x8V_\x8E_\x8P_\x8r_\x8o_\x8p_\x8e_\x8r_\x8t_\x8y_\x8)·-·Method·in·class | 1466 | ··_\x8a_\x8d_\x8d_\x8P_\x8r_\x8o_\x8p_\x8(_\x8A_\x8G_\x8A_\x8V_\x8E_\x8P_\x8r_\x8o_\x8p_\x8e_\x8r_\x8t_\x8y_\x8)·-·Method·in·class |
| 1467 | ··org.biojava.bio.seq.io.agave._\x8A_\x8G_\x8A_\x8V_\x8E_\x8X_\x8r_\x8e_\x8f | 1467 | ··org.biojava.bio.seq.io.agave._\x8A_\x8G_\x8A_\x8V_\x8E_\x8X_\x8r_\x8e_\x8f |
| 1468 | ······ | 1468 | ······ |
| Offset 2779, 22 lines modified | Offset 2779, 22 lines modified | ||
| 2779 | ··_\x8A_\x8p_\x8p_\x8B_\x8e_\x8a_\x8n_\x8R_\x8u_\x8n_\x8n_\x8e_\x8r·-·Class·in·_\x8o_\x8r_\x8g_\x8._\x8b_\x8i_\x8o_\x8j_\x8a_\x8v_\x8a_\x8._\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8x_\x8m_\x8l | 2779 | ··_\x8A_\x8p_\x8p_\x8B_\x8e_\x8a_\x8n_\x8R_\x8u_\x8n_\x8n_\x8e_\x8r·-·Class·in·_\x8o_\x8r_\x8g_\x8._\x8b_\x8i_\x8o_\x8j_\x8a_\x8v_\x8a_\x8._\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8x_\x8m_\x8l |
| 2780 | ······Create·a·bean·from·an·XML·file,·then·attempt·to·enter·it. | 2780 | ······Create·a·bean·from·an·XML·file,·then·attempt·to·enter·it. |
| 2781 | ··_\x8A_\x8p_\x8p_\x8B_\x8e_\x8a_\x8n_\x8R_\x8u_\x8n_\x8n_\x8e_\x8r_\x8(_\x8)·-·Constructor·for·class·org.biojava.utils.xml._\x8A_\x8p_\x8p_\x8B_\x8e_\x8a_\x8n_\x8R_\x8u_\x8n_\x8n_\x8e_\x8r | 2781 | ··_\x8A_\x8p_\x8p_\x8B_\x8e_\x8a_\x8n_\x8R_\x8u_\x8n_\x8n_\x8e_\x8r_\x8(_\x8)·-·Constructor·for·class·org.biojava.utils.xml._\x8A_\x8p_\x8p_\x8B_\x8e_\x8a_\x8n_\x8R_\x8u_\x8n_\x8n_\x8e_\x8r |
| 2782 | ······ | 2782 | ······ |
| 2783 | ··_\x8a_\x8p_\x8p_\x8e_\x8n_\x8d_\x8(_\x8N_\x8f_\x8a_\x8S_\x8u_\x8b_\x8M_\x8o_\x8d_\x8e_\x8l_\x8)·-·Method·in·class·org.biojava.utils.automata._\x8N_\x8f_\x8a_\x8S_\x8u_\x8b_\x8M_\x8o_\x8d_\x8e_\x8l | 2783 | ··_\x8a_\x8p_\x8p_\x8e_\x8n_\x8d_\x8(_\x8N_\x8f_\x8a_\x8S_\x8u_\x8b_\x8M_\x8o_\x8d_\x8e_\x8l_\x8)·-·Method·in·class·org.biojava.utils.automata._\x8N_\x8f_\x8a_\x8S_\x8u_\x8b_\x8M_\x8o_\x8d_\x8e_\x8l |
| 2784 | ······ | 2784 | ······ |
| 2785 | ··_\x8a_\x8p_\x8p_\x8e_\x8n_\x8d_\x8(_\x8T_\x8,_\x8·_\x8I_\x8t_\x8e_\x8r_\x8a_\x8b_\x8l_\x8e_\x8<_\x8F_\x8a_\x8s_\x8t_\x8q_\x8>_\x8)·-·Method·in·class | 2785 | ··_\x8a_\x8p_\x8p_\x8e_\x8n_\x8d_\x8(_\x8T_\x8,_\x8·_\x8I_\x8t_\x8e_\x8r_\x8a_\x8b_\x8l_\x8e_\x8<_\x8F_\x8a_\x8s_\x8t_\x8q_\x8>_\x8)·-·Method·in·class |
| 2786 | ··org.biojava.bio.program.fastq._\x8 | 2786 | ··org.biojava.bio.program.fastq._\x8S_.o_.l_.e_.x_\x8a_\x8F_\x8a_\x8s_\x8t_\x8q_\x8W_\x8r_\x8i_\x8t_\x8e_\x8r |
| 2787 | ······ | 2787 | ······ |
| 2788 | ··_\x8a_\x8p_\x8p_\x8e_\x8n_\x8d_\x8(_\x8T_\x8,_\x8·_\x8I_\x8t_\x8e_\x8r_\x8a_\x8b_\x8l_\x8e_\x8<_\x8F_\x8a_\x8s_\x8t_\x8q_\x8>_\x8)·-·Method·in·interface | 2788 | ··_\x8a_\x8p_\x8p_\x8e_\x8n_\x8d_\x8(_\x8T_\x8,_\x8·_\x8I_\x8t_\x8e_\x8r_\x8a_\x8b_\x8l_\x8e_\x8<_\x8F_\x8a_\x8s_\x8t_\x8q_\x8>_\x8)·-·Method·in·interface |
| 2789 | ··org.biojava.bio.program.fastq._\x8F_\x8a_\x8s_\x8t_\x8q_\x8W_\x8r_\x8i_\x8t_\x8e_\x8r | 2789 | ··org.biojava.bio.program.fastq._\x8F_\x8a_\x8s_\x8t_\x8q_\x8W_\x8r_\x8i_\x8t_\x8e_\x8r |
| 2790 | ······Append·the·specified·FASTQ·formatted·sequences·to·the·specified | 2790 | ······Append·the·specified·FASTQ·formatted·sequences·to·the·specified |
| 2791 | ······appendable. | 2791 | ······appendable. |
| 2792 | ··_\x8a_\x8p_\x8p_\x8e_\x8n_\x8d_\x8(_\x8T_\x8,_\x8·_\x8F_\x8a_\x8s_\x8t_\x8q_\x8._\x8._\x8._\x8)·-·Method·in·class | 2792 | ··_\x8a_\x8p_\x8p_\x8e_\x8n_\x8d_\x8(_\x8T_\x8,_\x8·_\x8F_\x8a_\x8s_\x8t_\x8q_\x8._\x8._\x8._\x8)·-·Method·in·class |
| 2793 | ··org.biojava.bio.program.fastq._\x8 | 2793 | ··org.biojava.bio.program.fastq._\x8S_.o_.l_.e_.x_\x8a_\x8F_\x8a_\x8s_\x8t_\x8q_\x8W_\x8r_\x8i_\x8t_\x8e_\x8r |
| 2794 | ······ | 2794 | ······ |
| 2795 | ··_\x8a_\x8p_\x8p_\x8e_\x8n_\x8d_\x8(_\x8T_\x8,_\x8·_\x8F_\x8a_\x8s_\x8t_\x8q_\x8._\x8._\x8._\x8)·-·Method·in·interface | 2795 | ··_\x8a_\x8p_\x8p_\x8e_\x8n_\x8d_\x8(_\x8T_\x8,_\x8·_\x8F_\x8a_\x8s_\x8t_\x8q_\x8._\x8._\x8._\x8)·-·Method·in·interface |
| 2796 | ··org.biojava.bio.program.fastq._\x8F_\x8a_\x8s_\x8t_\x8q_\x8W_\x8r_\x8i_\x8t_\x8e_\x8r | 2796 | ··org.biojava.bio.program.fastq._\x8F_\x8a_\x8s_\x8t_\x8q_\x8W_\x8r_\x8i_\x8t_\x8e_\x8r |
| 2797 | ······Append·the·specified·FASTQ·formatted·sequences·to·the·specified | 2797 | ······Append·the·specified·FASTQ·formatted·sequences·to·the·specified |
| 2798 | ······appendable. | 2798 | ······appendable. |
| 2799 | ··_\x8a_\x8p_\x8p_\x8e_\x8n_\x8d_\x8M_\x8a_\x8t_\x8r_\x8i_\x8x_\x8D_\x8a_\x8t_\x8a_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8O_\x8b_\x8j_\x8e_\x8c_\x8t_\x8)·-·Method·in·class | 2799 | ··_\x8a_\x8p_\x8p_\x8e_\x8n_\x8d_\x8M_\x8a_\x8t_\x8r_\x8i_\x8x_\x8D_\x8a_\x8t_\x8a_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8O_\x8b_\x8j_\x8e_\x8c_\x8t_\x8)·-·Method·in·class |
| 2800 | ··org.biojavax.bio.phylo.io.nexus._\x8C_\x8h_\x8a_\x8r_\x8a_\x8c_\x8t_\x8e_\x8r_\x8s_\x8B_\x8l_\x8o_\x8c_\x8k | 2800 | ··org.biojavax.bio.phylo.io.nexus._\x8C_\x8h_\x8a_\x8r_\x8a_\x8c_\x8t_\x8e_\x8r_\x8s_\x8B_\x8l_\x8o_\x8c_\x8k |
| Offset 4471, 15 lines modified | Offset 4471, 15 lines modified | ||
| 4471 | ······An·implementation·that·always·vetoes·everything. | 4471 | ······An·implementation·that·always·vetoes·everything. |
| 4472 | ··_\x8C_\x8h_\x8a_\x8n_\x8g_\x8e_\x8L_\x8i_\x8s_\x8t_\x8e_\x8n_\x8e_\x8r_\x8._\x8C_\x8h_\x8a_\x8n_\x8g_\x8e_\x8E_\x8v_\x8e_\x8n_\x8t_\x8R_\x8e_\x8c_\x8o_\x8r_\x8d_\x8e_\x8r·-·Class·in·_\x8o_\x8r_\x8g_\x8._\x8b_\x8i_\x8o_\x8j_\x8a_\x8v_\x8a_\x8._\x8u_\x8t_\x8i_\x8l_\x8s | 4472 | ··_\x8C_\x8h_\x8a_\x8n_\x8g_\x8e_\x8L_\x8i_\x8s_\x8t_\x8e_\x8n_\x8e_\x8r_\x8._\x8C_\x8h_\x8a_\x8n_\x8g_\x8e_\x8E_\x8v_\x8e_\x8n_\x8t_\x8R_\x8e_\x8c_\x8o_\x8r_\x8d_\x8e_\x8r·-·Class·in·_\x8o_\x8r_\x8g_\x8._\x8b_\x8i_\x8o_\x8j_\x8a_\x8v_\x8a_\x8._\x8u_\x8t_\x8i_\x8l_\x8s |
| 4473 | ······A·listener·that·remembers·the·ChangeEvent·of·the·last·change. | 4473 | ······A·listener·that·remembers·the·ChangeEvent·of·the·last·change. |
| 4474 | ··_\x8C_\x8h_\x8a_\x8n_\x8g_\x8e_\x8L_\x8i_\x8s_\x8t_\x8e_\x8n_\x8e_\x8r_\x8._\x8L_\x8o_\x8g_\x8g_\x8i_\x8n_\x8g_\x8L_\x8i_\x8s_\x8t_\x8e_\x8n_\x8e_\x8r·-·Class·in·_\x8o_\x8r_\x8g_\x8._\x8b_\x8i_\x8o_\x8j_\x8a_\x8v_\x8a_\x8._\x8u_\x8t_\x8i_\x8l_\x8s | 4474 | ··_\x8C_\x8h_\x8a_\x8n_\x8g_\x8e_\x8L_\x8i_\x8s_\x8t_\x8e_\x8n_\x8e_\x8r_\x8._\x8L_\x8o_\x8g_\x8g_\x8i_\x8n_\x8g_\x8L_\x8i_\x8s_\x8t_\x8e_\x8n_\x8e_\x8r·-·Class·in·_\x8o_\x8r_\x8g_\x8._\x8b_\x8i_\x8o_\x8j_\x8a_\x8v_\x8a_\x8._\x8u_\x8t_\x8i_\x8l_\x8s |
| 4475 | ······A·listener·that·writes·information·about·the·event·stream·to·a | 4475 | ······A·listener·that·writes·information·about·the·event·stream·to·a |
| 4476 | ······PrintStream. | 4476 | ······PrintStream. |
| 4477 | ··_\x8c_\x8h_\x8a_\x8n_\x8g_\x8e_\x8S_\x8t_\x8a_\x8t_\x8e_\x8(_\x8i_\x8n_\x8t_\x8)·-·Method·in·class | 4477 | ··_\x8c_\x8h_\x8a_\x8n_\x8g_\x8e_\x8S_\x8t_\x8a_\x8t_\x8e_\x8(_\x8i_\x8n_\x8t_\x8)·-·Method·in·class |
| 4478 | ··org.biojava.bio.program.sax._\x8 | 4478 | ··org.biojava.bio.program.sax._\x8F_.a_.s_.t_.a_.S_.e_.q_.u_.e_.n_.c_\x8e_\x8S_\x8A_\x8X_\x8P_\x8a_\x8r_\x8s_\x8e_\x8r |
| 4479 | ······Centralise·chaining·of·iState·field·to·help·with·debugging. | 4479 | ······Centralise·chaining·of·iState·field·to·help·with·debugging. |
| 4480 | ··_\x8c_\x8h_\x8a_\x8n_\x8g_\x8e_\x8S_\x8u_\x8p_\x8p_\x8o_\x8r_\x8t_\x8(_\x8)·-·Method·in·class·org.biojava.utils._\x8C_\x8h_\x8a_\x8n_\x8g_\x8e_\x8F_\x8o_\x8r_\x8w_\x8a_\x8r_\x8d_\x8e_\x8r | 4480 | ··_\x8c_\x8h_\x8a_\x8n_\x8g_\x8e_\x8S_\x8u_\x8p_\x8p_\x8o_\x8r_\x8t_\x8(_\x8)·-·Method·in·class·org.biojava.utils._\x8C_\x8h_\x8a_\x8n_\x8g_\x8e_\x8F_\x8o_\x8r_\x8w_\x8a_\x8r_\x8d_\x8e_\x8r |
| 4481 | ······Return·the·underlying·ChangeSupport·instance·that·can·be·used·to·fire | 4481 | ······Return·the·underlying·ChangeSupport·instance·that·can·be·used·to·fire |
| 4482 | ······ChangeEvents·and·mannage·listeners. | 4482 | ······ChangeEvents·and·mannage·listeners. |
| 4483 | ··_\x8C_\x8h_\x8a_\x8n_\x8g_\x8e_\x8S_\x8u_\x8p_\x8p_\x8o_\x8r_\x8t·-·Class·in·_\x8o_\x8r_\x8g_\x8._\x8b_\x8i_\x8o_\x8j_\x8a_\x8v_\x8a_\x8._\x8u_\x8t_\x8i_\x8l_\x8s | 4483 | ··_\x8C_\x8h_\x8a_\x8n_\x8g_\x8e_\x8S_\x8u_\x8p_\x8p_\x8o_\x8r_\x8t·-·Class·in·_\x8o_\x8r_\x8g_\x8._\x8b_\x8i_\x8o_\x8j_\x8a_\x8v_\x8a_\x8._\x8u_\x8t_\x8i_\x8l_\x8s |
| 4484 | ······A·utility·class·to·provide·management·for·informing·ChangeListeners·of | 4484 | ······A·utility·class·to·provide·management·for·informing·ChangeListeners·of |
| 4485 | ······ChangeEvents. | 4485 | ······ChangeEvents. |
| Offset 4563, 15 lines modified | Offset 4563, 15 lines modified | ||
| 4563 | ··_\x8C_\x8H_\x8A_\x8R_\x8A_\x8C_\x8T_\x8E_\x8R·-·Static·variable·in·interface | 4563 | ··_\x8C_\x8H_\x8A_\x8R_\x8A_\x8C_\x8T_\x8E_\x8R·-·Static·variable·in·interface |
| 4564 | ··org.biojava.bio.seq.io._\x8S_\x8y_\x8m_\x8b_\x8o_\x8l_\x8T_\x8o_\x8k_\x8e_\x8n_\x8i_\x8z_\x8a_\x8t_\x8i_\x8o_\x8n | 4564 | ··org.biojava.bio.seq.io._\x8S_\x8y_\x8m_\x8b_\x8o_\x8l_\x8T_\x8o_\x8k_\x8e_\x8n_\x8i_\x8z_\x8a_\x8t_\x8i_\x8o_\x8n |
| 4565 | ······ | 4565 | ······ |
| 4566 | ··_\x8c_\x8h_\x8a_\x8r_\x8a_\x8c_\x8t_\x8e_\x8r_\x8s_\x8(_\x8c_\x8h_\x8a_\x8r_\x8[_\x8]_\x8,_\x8·_\x8i_\x8n_\x8t_\x8,_\x8·_\x8i_\x8n_\x8t_\x8)·-·Method·in·class | 4566 | ··_\x8c_\x8h_\x8a_\x8r_\x8a_\x8c_\x8t_\x8e_\x8r_\x8s_\x8(_\x8c_\x8h_\x8a_\x8r_\x8[_\x8]_\x8,_\x8·_\x8i_\x8n_\x8t_\x8,_\x8·_\x8i_\x8n_\x8t_\x8)·-·Method·in·class |
| 4567 | ··org.biojava.bio.program.blast2html._\x8B_\x8l_\x8a_\x8s_\x8t_\x82_\x8H_\x8T_\x8M_\x8L_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r | 4567 | ··org.biojava.bio.program.blast2html._\x8B_\x8l_\x8a_\x8s_\x8t_\x82_\x8H_\x8T_\x8M_\x8L_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r |
| 4568 | ······Describe·characters·method·here. | 4568 | ······Describe·characters·method·here. |
| 4569 | ··_\x8c_\x8h_\x8a_\x8r_\x8a_\x8c_\x8t_\x8e_\x8r_\x8s_\x8(_\x8c_\x8h_\x8a_\x8r_\x8[_\x8]_\x8,_\x8·_\x8i_\x8n_\x8t_\x8,_\x8·_\x8i_\x8n_\x8t_\x8)·-·Method·in·class | 4569 | ··_\x8c_\x8h_\x8a_\x8r_\x8a_\x8c_\x8t_\x8e_\x8r_\x8s_\x8(_\x8c_\x8h_\x8a_\x8r_\x8[_\x8]_\x8,_\x8·_\x8i_\x8n_\x8t_\x8,_\x8·_\x8i_\x8n_\x8t_\x8)·-·Method·in·class |
| 4570 | ··org.biojava.bio.program.sax._\x8 | 4570 | ··org.biojava.bio.program.sax._\x8F_.a_.s_.t_.a_.S_.e_.q_.u_.e_.n_.c_\x8e_\x8S_\x8A_\x8X_\x8P_\x8a_\x8r_\x8s_\x8e_\x8r |
| 4571 | ······Utility·method·to·centralize·the·sending·of·a·SAX·characters·message·a | 4571 | ······Utility·method·to·centralize·the·sending·of·a·SAX·characters·message·a |
| 4572 | ······document·handler. | 4572 | ······document·handler. |
| 4573 | ··_\x8c_\x8h_\x8a_\x8r_\x8a_\x8c_\x8t_\x8e_\x8r_\x8s_\x8(_\x8c_\x8h_\x8a_\x8r_\x8[_\x8]_\x8,_\x8·_\x8i_\x8n_\x8t_\x8,_\x8·_\x8i_\x8n_\x8t_\x8)·-·Method·in·class | 4573 | ··_\x8c_\x8h_\x8a_\x8r_\x8a_\x8c_\x8t_\x8e_\x8r_\x8s_\x8(_\x8c_\x8h_\x8a_\x8r_\x8[_\x8]_\x8,_\x8·_\x8i_\x8n_\x8t_\x8,_\x8·_\x8i_\x8n_\x8t_\x8)·-·Method·in·class |
| 4574 | ··org.biojava.bio.program.ssbind._\x8S_\x8e_\x8q_\x8S_\x8i_\x8m_\x8i_\x8l_\x8a_\x8r_\x8i_\x8t_\x8y_\x8A_\x8d_\x8a_\x8p_\x8t_\x8e_\x8r | 4574 | ··org.biojava.bio.program.ssbind._\x8S_\x8e_\x8q_\x8S_\x8i_\x8m_\x8i_\x8l_\x8a_\x8r_\x8i_\x8t_\x8y_\x8A_\x8d_\x8a_\x8p_\x8t_\x8e_\x8r |
| 4575 | ······ | 4575 | ······ |
| 4576 | ··_\x8c_\x8h_\x8a_\x8r_\x8a_\x8c_\x8t_\x8e_\x8r_\x8s_\x8(_\x8c_\x8h_\x8a_\x8r_\x8[_\x8]_\x8,_\x8·_\x8i_\x8n_\x8t_\x8,_\x8·_\x8i_\x8n_\x8t_\x8)·-·Method·in·class | 4576 | ··_\x8c_\x8h_\x8a_\x8r_\x8a_\x8c_\x8t_\x8e_\x8r_\x8s_\x8(_\x8c_\x8h_\x8a_\x8r_\x8[_\x8]_\x8,_\x8·_\x8i_\x8n_\x8t_\x8,_\x8·_\x8i_\x8n_\x8t_\x8)·-·Method·in·class |
| 4577 | ··org.biojava.bio.program.xml._\x8S_\x8i_\x8m_\x8p_\x8l_\x8e_\x8X_\x8M_\x8L_\x8E_\x8m_\x8i_\x8t_\x8t_\x8e_\x8r | 4577 | ··org.biojava.bio.program.xml._\x8S_\x8i_\x8m_\x8p_\x8l_\x8e_\x8X_\x8M_\x8L_\x8E_\x8m_\x8i_\x8t_\x8t_\x8e_\x8r |
| Offset 7262, 15 lines modified | Offset 7262, 15 lines modified | ||
| 7262 | ······ | 7262 | ······ |
| 7263 | ··_\x8d_\x8o_\x8R_\x8e_\x8t_\x8a_\x8i_\x8n_\x8(_\x8)·-·Method·in·class·org.biojava.bio.program.tagvalue._\x8T_\x8a_\x8g_\x8D_\x8r_\x8o_\x8p_\x8p_\x8e_\x8r | 7263 | ··_\x8d_\x8o_\x8R_\x8e_\x8t_\x8a_\x8i_\x8n_\x8(_\x8)·-·Method·in·class·org.biojava.bio.program.tagvalue._\x8T_\x8a_\x8g_\x8D_\x8r_\x8o_\x8p_\x8p_\x8e_\x8r |
| 7264 | ······Find·out·if·known·tags·are·retained·or·dropped. | 7264 | ······Find·out·if·known·tags·are·retained·or·dropped. |
| 7265 | ··_\x8d_\x8o_\x8S_\x8o_\x8r_\x8t_\x8P_\x8e_\x8p_\x8t_\x8i_\x8d_\x8e_\x8s_\x8(_\x8)·-·Method·in·class | 7265 | ··_\x8d_\x8o_\x8S_\x8o_\x8r_\x8t_\x8P_\x8e_\x8p_\x8t_\x8i_\x8d_\x8e_\x8s_\x8(_\x8)·-·Method·in·class |
| 7266 | ··org.biojava.bio.gui.sequence._\x8A_\x8b_\x8s_\x8t_\x8r_\x8a_\x8c_\x8t_\x8P_\x8e_\x8p_\x8t_\x8i_\x8d_\x8e_\x8D_\x8i_\x8g_\x8e_\x8s_\x8t_\x8R_\x8e_\x8n_\x8d_\x8e_\x8r_\x8e_\x8r | 7266 | ··org.biojava.bio.gui.sequence._\x8A_\x8b_\x8s_\x8t_\x8r_\x8a_\x8c_\x8t_\x8P_\x8e_\x8p_\x8t_\x8i_\x8d_\x8e_\x8D_\x8i_\x8g_\x8e_\x8s_\x8t_\x8R_\x8e_\x8n_\x8d_\x8e_\x8r_\x8e_\x8r |
| 7267 | ······ | 7267 | ······ |
| 7268 | ··_\x8d_\x8o_\x8T_\x8r_\x8a_\x8n_\x8s_\x8l_\x8a_\x8t_\x8e_\x8(_\x8S_\x8y_\x8m_\x8b_\x8o_\x8l_\x8)·-·Method·in·class | 7268 | ··_\x8d_\x8o_\x8T_\x8r_\x8a_\x8n_\x8s_\x8l_\x8a_\x8t_\x8e_\x8(_\x8S_\x8y_\x8m_\x8b_\x8o_\x8l_\x8)·-·Method·in·class |
| 7269 | ··org.biojava.bio.symbol._\x8A_\x8b_\x8s_\x8t_\x8r_\x8a_\x8c_\x8t_\x8 | 7269 | ··org.biojava.bio.symbol._\x8A_\x8b_\x8s_\x8t_\x8r_\x8a_\x8c_\x8t_\x8M_.a_.n_.y_.T_.o_.O_.n_\x8e_\x8T_\x8r_\x8a_\x8n_\x8s_\x8l_\x8a_\x8t_\x8i_\x8o_\x8n_\x8T_\x8a_\x8b_\x8l_\x8e |
| 7270 | ······this·method·is·expected·to·translate·any·symbol·in·the·source·alphabet. | 7270 | ······this·method·is·expected·to·translate·any·symbol·in·the·source·alphabet. |
| 7271 | ··_\x8d_\x8o_\x8T_\x8r_\x8a_\x8n_\x8s_\x8l_\x8a_\x8t_\x8e_\x8(_\x8S_\x8y_\x8m_\x8b_\x8o_\x8l_\x8)·-·Method·in·class | 7271 | ··_\x8d_\x8o_\x8T_\x8r_\x8a_\x8n_\x8s_\x8l_\x8a_\x8t_\x8e_\x8(_\x8S_\x8y_\x8m_\x8b_\x8o_\x8l_\x8)·-·Method·in·class |
| 7272 | ··org.biojava.bio.symbol._\x8S_\x8i_\x8m_\x8p_\x8l_\x8e_\x8M_\x8a_\x8n_\x8y_\x8T_\x8o_\x8O_\x8n_\x8e_\x8T_\x8r_\x8a_\x8n_\x8s_\x8l_\x8a_\x8t_\x8i_\x8o_\x8n_\x8T_\x8a_\x8b_\x8l_\x8e | 7272 | ··org.biojava.bio.symbol._\x8S_\x8i_\x8m_\x8p_\x8l_\x8e_\x8M_\x8a_\x8n_\x8y_\x8T_\x8o_\x8O_\x8n_\x8e_\x8T_\x8r_\x8a_\x8n_\x8s_\x8l_\x8a_\x8t_\x8i_\x8o_\x8n_\x8T_\x8a_\x8b_\x8l_\x8e |
| 7273 | ······ | 7273 | ······ |
| 7274 | ··_\x8d_\x8o_\x8T_\x8r_\x8a_\x8n_\x8s_\x8l_\x8a_\x8t_\x8e_\x8(_\x8S_\x8y_\x8m_\x8b_\x8o_\x8l_\x8)·-·Method·in·class | 7274 | ··_\x8d_\x8o_\x8T_\x8r_\x8a_\x8n_\x8s_\x8l_\x8a_\x8t_\x8e_\x8(_\x8S_\x8y_\x8m_\x8b_\x8o_\x8l_\x8)·-·Method·in·class |
| 7275 | ··org.biojava.bio.symbol._\x8S_\x8i_\x8m_\x8p_\x8l_\x8e_\x8R_\x8e_\x8v_\x8e_\x8r_\x8s_\x8i_\x8b_\x8l_\x8e_\x8T_\x8r_\x8a_\x8n_\x8s_\x8l_\x8a_\x8t_\x8i_\x8o_\x8n_\x8T_\x8a_\x8b_\x8l_\x8e | 7275 | ··org.biojava.bio.symbol._\x8S_\x8i_\x8m_\x8p_\x8l_\x8e_\x8R_\x8e_\x8v_\x8e_\x8r_\x8s_\x8i_\x8b_\x8l_\x8e_\x8T_\x8r_\x8a_\x8n_\x8s_\x8l_\x8a_\x8t_\x8i_\x8o_\x8n_\x8T_\x8a_\x8b_\x8l_\x8e |
| 7276 | ······ | 7276 | ······ |
| Offset 8024, 15 lines modified | Offset 8024, 15 lines modified | ||
| 8024 | ··_\x8e_\x8n_\x8d_\x8E_\x8l_\x8e_\x8m_\x8e_\x8n_\x8t_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8A_\x8X_\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8)·-·Method·in·class | 8024 | ··_\x8e_\x8n_\x8d_\x8E_\x8l_\x8e_\x8m_\x8e_\x8n_\x8t_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8A_\x8X_\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8)·-·Method·in·class |
| 8025 | ··org.biojava.utils.stax._\x8S_\x8t_\x8A_\x8X_\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8B_\x8a_\x8s_\x8e | 8025 | ··org.biojava.utils.stax._\x8S_\x8t_\x8A_\x8X_\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8B_\x8a_\x8s_\x8e |
| 8026 | ······ | 8026 | ······ |
| 8027 | ··_\x8e_\x8n_\x8d_\x8E_\x8l_\x8e_\x8m_\x8e_\x8n_\x8t_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8A_\x8X_\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8)·-·Method·in·class | 8027 | ··_\x8e_\x8n_\x8d_\x8E_\x8l_\x8e_\x8m_\x8e_\x8n_\x8t_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8A_\x8X_\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8)·-·Method·in·class |
| 8028 | ··org.biojava.utils.stax._\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8E_\x8l_\x8e_\x8m_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8B_\x8a_\x8s_\x8e | 8028 | ··org.biojava.utils.stax._\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8E_\x8l_\x8e_\x8m_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8B_\x8a_\x8s_\x8e |
| 8029 | ······ | 8029 | ······ |
| 8030 | ··_\x8e_\x8n_\x8d_\x8E_\x8l_\x8e_\x8m_\x8e_\x8n_\x8t_\x8(_\x8Q_\x8N_\x8a_\x8m_\x8e_\x8)·-·Method·in·class | 8030 | ··_\x8e_\x8n_\x8d_\x8E_\x8l_\x8e_\x8m_\x8e_\x8n_\x8t_\x8(_\x8Q_\x8N_\x8a_\x8m_\x8e_\x8)·-·Method·in·class |
| 8031 | ··org.biojava.bio.program.sax._\x8 | 8031 | ··org.biojava.bio.program.sax._\x8F_.a_.s_.t_.a_.S_.e_.q_.u_.e_.n_.c_\x8e_\x8S_\x8A_\x8X_\x8P_\x8a_\x8r_\x8s_\x8e_\x8r |
| 8032 | ······Utility·method·to·centralize·the·sending·of·a·SAX·endElement·message·a | 8032 | ······Utility·method·to·centralize·the·sending·of·a·SAX·endElement·message·a |
| 8033 | ······document·handler. | 8033 | ······document·handler. |
| 8034 | ··_\x8e_\x8n_\x8d_\x8E_\x8l_\x8e_\x8m_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8A_\x8X_\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8)·-·Method·in | 8034 | ··_\x8e_\x8n_\x8d_\x8E_\x8l_\x8e_\x8m_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8A_\x8X_\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8)·-·Method·in |
| 8035 | ··class·org.biojava.bio.seq.io.agave._\x8A_\x8G_\x8A_\x8V_\x8E_\x8B_\x8i_\x8o_\x8S_\x8e_\x8q_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r | 8035 | ··class·org.biojava.bio.seq.io.agave._\x8A_\x8G_\x8A_\x8V_\x8E_\x8B_\x8i_\x8o_\x8S_\x8e_\x8q_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r |
| 8036 | ······ | 8036 | ······ |
| 8037 | ··_\x8e_\x8n_\x8d_\x8E_\x8l_\x8e_\x8m_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8A_\x8X_\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8)·-·Method·in | 8037 | ··_\x8e_\x8n_\x8d_\x8E_\x8l_\x8e_\x8m_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8S_\x8t_\x8A_\x8X_\x8C_\x8o_\x8n_\x8t_\x8e_\x8n_\x8t_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r_\x8)·-·Method·in |
| 8038 | ··class·org.biojava.bio.seq.io.agave._\x8A_\x8G_\x8A_\x8V_\x8E_\x8C_\x8h_\x8r_\x8o_\x8m_\x8o_\x8s_\x8o_\x8m_\x8e_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r | 8038 | ··class·org.biojava.bio.seq.io.agave._\x8A_\x8G_\x8A_\x8V_\x8E_\x8C_\x8h_\x8r_\x8o_\x8m_\x8o_\x8s_\x8o_\x8m_\x8e_\x8H_\x8a_\x8n_\x8d_\x8l_\x8e_\x8r |
| Offset 10247, 38 lines modified | Offset 10247, 38 lines modified | ||
| 10247 | ··_\x8F_\x8o_\x8r_\x8m_\x8a_\x8t·-·Interface·in·_\x8o_\x8r_\x8g_\x8._\x8b_\x8i_\x8o_\x8j_\x8a_\x8v_\x8a_\x8._\x8b_\x8i_\x8o_\x8._\x8p_\x8r_\x8o_\x8g_\x8r_\x8a_\x8m_\x8._\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8s | 10247 | ··_\x8F_\x8o_\x8r_\x8m_\x8a_\x8t·-·Interface·in·_\x8o_\x8r_\x8g_\x8._\x8b_\x8i_\x8o_\x8j_\x8a_\x8v_\x8a_\x8._\x8b_\x8i_\x8o_\x8._\x8p_\x8r_\x8o_\x8g_\x8r_\x8a_\x8m_\x8._\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8s |
| 10248 | ······A·file·format·supported·by·the·tag-value·event-based·parsing·system. | 10248 | ······A·file·format·supported·by·the·tag-value·event-based·parsing·system. |
| 10249 | ··_\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8B_\x8u_\x8f_\x8f_\x8e_\x8r_\x8,_\x8·_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8)·-·Method·in·class | 10249 | ··_\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8B_\x8u_\x8f_\x8f_\x8e_\x8r_\x8,_\x8·_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8)·-·Method·in·class |
| 10250 | ··org.biojava.bio.seq.io._\x8S_\x8w_\x8i_\x8s_\x8s_\x8p_\x8r_\x8o_\x8t_\x8F_\x8i_\x8l_\x8e_\x8F_\x8o_\x8r_\x8m_\x8e_\x8r | 10250 | ··org.biojava.bio.seq.io._\x8S_\x8w_\x8i_\x8s_\x8s_\x8p_\x8r_\x8o_\x8t_\x8F_\x8i_\x8l_\x8e_\x8F_\x8o_\x8r_\x8m_\x8e_\x8r |
| 10251 | ······Deprecated. | 10251 | ······Deprecated. |
| 10252 | ······formatLocation·creates·a·String·representation·of·a·Location. | 10252 | ······formatLocation·creates·a·String·representation·of·a·Location. |
| 10253 | ··_\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8B_\x8u_\x8f_\x8f_\x8e_\x8r_\x8,_\x8·_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8,_\x8·_\x8S_\x8t_\x8r_\x8a_\x8n_\x8d_\x8e_\x8d_\x8F_\x8e_\x8a_\x8t_\x8u_\x8r_\x8e_\x8._\x8S_\x8t_\x8r_\x8a_\x8n_\x8d_\x8)·-·Method·in | 10253 | ··_\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8B_\x8u_\x8f_\x8f_\x8e_\x8r_\x8,_\x8·_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8,_\x8·_\x8S_\x8t_\x8r_\x8a_\x8n_\x8d_\x8e_\x8d_\x8F_\x8e_\x8a_\x8t_\x8u_\x8r_\x8e_\x8._\x8S_\x8t_\x8r_\x8a_\x8n_\x8d_\x8)·-·Method·in |
| 10254 | ··class·org.biojava.bio.seq.io._\x8 | 10254 | ··class·org.biojava.bio.seq.io._\x8P_.r_.o_.t_.e_.i_.n_.R_.e_.f_.S_.e_.q_\x8F_\x8i_\x8l_\x8e_\x8F_\x8o_\x8r_\x8m_\x8e_\x8r |
| 10255 | ······formatLocation·creates·an·EMBL/Genbank·style·representation·of·a | 10255 | ······formatLocation·creates·an·EMBL/Genbank·style·representation·of·a |
| 10256 | ······Location. | 10256 | ······Location. |
| 10257 | ··_\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8B_\x8u_\x8f_\x8f_\x8e_\x8r_\x8,_\x8·_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8,_\x8·_\x8S_\x8t_\x8r_\x8a_\x8n_\x8d_\x8e_\x8d_\x8F_\x8e_\x8a_\x8t_\x8u_\x8r_\x8e_\x8._\x8S_\x8t_\x8r_\x8a_\x8n_\x8d_\x8)·-·Method·in | 10257 | ··_\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8B_\x8u_\x8f_\x8f_\x8e_\x8r_\x8,_\x8·_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8,_\x8·_\x8S_\x8t_\x8r_\x8a_\x8n_\x8d_\x8e_\x8d_\x8F_\x8e_\x8a_\x8t_\x8u_\x8r_\x8e_\x8._\x8S_\x8t_\x8r_\x8a_\x8n_\x8d_\x8)·-·Method·in |
| 10258 | ··interface·org.biojava.bio.seq.io._\x8S_\x8e_\x8q_\x8F_\x8i_\x8l_\x8e_\x8F_\x8o_\x8r_\x8m_\x8e_\x8r | 10258 | ··interface·org.biojava.bio.seq.io._\x8S_\x8e_\x8q_\x8F_\x8i_\x8l_\x8e_\x8F_\x8o_\x8r_\x8m_\x8e_\x8r |
| 10259 | ······Deprecated. | 10259 | ······Deprecated. |
| 10260 | ······formatLocation·creates·a·String·representation·of·a·Location. | 10260 | ······formatLocation·creates·a·String·representation·of·a·Location. |
| 10261 | ··_\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8B_\x8u_\x8f_\x8f_\x8e_\x8r_\x8,_\x8·_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8,_\x8·_\x8S_\x8t_\x8r_\x8a_\x8n_\x8d_\x8e_\x8d_\x8F_\x8e_\x8a_\x8t_\x8u_\x8r_\x8e_\x8._\x8S_\x8t_\x8r_\x8a_\x8n_\x8d_\x8)·-·Method·in | 10261 | ··_\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8B_\x8u_\x8f_\x8f_\x8e_\x8r_\x8,_\x8·_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8,_\x8·_\x8S_\x8t_\x8r_\x8a_\x8n_\x8d_\x8e_\x8d_\x8F_\x8e_\x8a_\x8t_\x8u_\x8r_\x8e_\x8._\x8S_\x8t_\x8r_\x8a_\x8n_\x8d_\x8)·-·Method·in |
| 10262 | ··class·org.biojava.bio.seq.io._\x8S_\x8w_\x8i_\x8s_\x8s_\x8p_\x8r_\x8o_\x8t_\x8F_\x8i_\x8l_\x8e_\x8F_\x8o_\x8r_\x8m_\x8e_\x8r | 10262 | ··class·org.biojava.bio.seq.io._\x8S_\x8w_\x8i_\x8s_\x8s_\x8p_\x8r_\x8o_\x8t_\x8F_\x8i_\x8l_\x8e_\x8F_\x8o_\x8r_\x8m_\x8e_\x8r |
| 10263 | ······Deprecated. | 10263 | ······Deprecated. |
| 10264 | ······formatLocation·creates·a·String·representation·of·a·Location. | 10264 | ······formatLocation·creates·a·String·representation·of·a·Location. |
| 10265 | ··_\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8(_\x8F_\x8e_\x8a_\x8t_\x8u_\x8r_\x8e_\x8)·-·Method·in·class | 10265 | ··_\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8(_\x8F_\x8e_\x8a_\x8t_\x8u_\x8r_\x8e_\x8)·-·Method·in·class |
| 10266 | ··org.biojava.bio.seq.io._\x8 | 10266 | ··org.biojava.bio.seq.io._\x8P_.r_.o_.t_.e_.i_.n_.R_.e_.f_.S_.e_.q_\x8F_\x8i_\x8l_\x8e_\x8F_\x8o_\x8r_\x8m_\x8e_\x8r |
| 10267 | ······Formats·the·location·of·a·feature. | 10267 | ······Formats·the·location·of·a·feature. |
| 10268 | ··_\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8(_\x8F_\x8e_\x8a_\x8t_\x8u_\x8r_\x8e_\x8)·-·Method·in·interface | 10268 | ··_\x8f_\x8o_\x8r_\x8m_\x8a_\x8t_\x8L_\x8o_\x8c_\x8a_\x8t_\x8i_\x8o_\x8n_\x8(_\x8F_\x8e_\x8a_\x8t_\x8u_\x8r_\x8e_\x8)·-·Method·in·interface |
| 10269 | ··org.biojava.bio.seq.io._\x8S_\x8e_\x8q_\x8F_\x8i_\x8l_\x8e_\x8F_\x8o_\x8r_\x8m_\x8e_\x8r | 10269 | ··org.biojava.bio.seq.io._\x8S_\x8e_\x8q_\x8F_\x8i_\x8l_\x8e_\x8F_\x8o_\x8r_\x8m_\x8e_\x8r |
| 10270 | ······Deprecated. | 10270 | ······Deprecated. |
| Max diff block lines reached; 37910/48433 bytes (78.27%) of diff not shown. | |||
| Offset 2253, 15 lines modified | Offset 2253, 15 lines modified | ||
| 2253 | },·{ | 2253 | },·{ |
| 2254 | ····"p":·"org.biojava.bio.seq.io.agave", | 2254 | ····"p":·"org.biojava.bio.seq.io.agave", |
| 2255 | ····"c":·"AGAVEMapLocation", | 2255 | ····"c":·"AGAVEMapLocation", |
| 2256 | ····"l":·"addPosition(AGAVEMapPosition)", | 2256 | ····"l":·"addPosition(AGAVEMapPosition)", |
| 2257 | ····"u":·"addPosition(org.biojava.bio.seq.io.agave.AGAVEMapPosition)" | 2257 | ····"u":·"addPosition(org.biojava.bio.seq.io.agave.AGAVEMapPosition)" |
| 2258 | },·{ | 2258 | },·{ |
| 2259 | ····"p":·"org.biojava.bio.program.sax", | 2259 | ····"p":·"org.biojava.bio.program.sax", |
| 2260 | ····"c":·" | 2260 | ····"c":·"FastaSequenceSAXParser", |
| 2261 | ····"l":·"addPrefixMapping(String,·String)", | 2261 | ····"l":·"addPrefixMapping(String,·String)", |
| 2262 | ····"u":·"addPrefixMapping(java.lang.String,java.lang.String)" | 2262 | ····"u":·"addPrefixMapping(java.lang.String,java.lang.String)" |
| 2263 | },·{ | 2263 | },·{ |
| 2264 | ····"p":·"org.biojava.bio.seq.io.agave", | 2264 | ····"p":·"org.biojava.bio.seq.io.agave", |
| 2265 | ····"c":·"AGAVERelatedAnnot", | 2265 | ····"c":·"AGAVERelatedAnnot", |
| 2266 | ····"l":·"addProp(AGAVEProperty)", | 2266 | ····"l":·"addProp(AGAVEProperty)", |
| 2267 | ····"u":·"addProp(org.biojava.bio.seq.io.agave.AGAVEProperty)" | 2267 | ····"u":·"addProp(org.biojava.bio.seq.io.agave.AGAVEProperty)" |
| Offset 3994, 25 lines modified | Offset 3994, 25 lines modified | ||
| 3994 | },·{ | 3994 | },·{ |
| 3995 | ····"p":·"org.biojava.utils.automata", | 3995 | ····"p":·"org.biojava.utils.automata", |
| 3996 | ····"c":·"NfaSubModel", | 3996 | ····"c":·"NfaSubModel", |
| 3997 | ····"l":·"append(NfaSubModel)", | 3997 | ····"l":·"append(NfaSubModel)", |
| 3998 | ····"u":·"append(org.biojava.utils.automata.NfaSubModel)" | 3998 | ····"u":·"append(org.biojava.utils.automata.NfaSubModel)" |
| 3999 | },·{ | 3999 | },·{ |
| 4000 | ····"p":·"org.biojava.bio.program.fastq", | 4000 | ····"p":·"org.biojava.bio.program.fastq", |
| 4001 | ····"c":·" | 4001 | ····"c":·"SolexaFastqWriter", |
| 4002 | ····"l":·"append(T,·Fastq...)", | 4002 | ····"l":·"append(T,·Fastq...)", |
| 4003 | ····"u":·"append(T,org.biojava.bio.program.fastq.Fastq...)" | 4003 | ····"u":·"append(T,org.biojava.bio.program.fastq.Fastq...)" |
| 4004 | },·{ | 4004 | },·{ |
| 4005 | ····"p":·"org.biojava.bio.program.fastq", | 4005 | ····"p":·"org.biojava.bio.program.fastq", |
| 4006 | ····"c":·"FastqWriter", | 4006 | ····"c":·"FastqWriter", |
| 4007 | ····"l":·"append(T,·Fastq...)", | 4007 | ····"l":·"append(T,·Fastq...)", |
| 4008 | ····"u":·"append(T,org.biojava.bio.program.fastq.Fastq...)" | 4008 | ····"u":·"append(T,org.biojava.bio.program.fastq.Fastq...)" |
| 4009 | },·{ | 4009 | },·{ |
| 4010 | ····"p":·"org.biojava.bio.program.fastq", | 4010 | ····"p":·"org.biojava.bio.program.fastq", |
| 4011 | ····"c":·" | 4011 | ····"c":·"SolexaFastqWriter", |
| 4012 | ····"l":·"append(T,·Iterable<Fastq>)", | 4012 | ····"l":·"append(T,·Iterable<Fastq>)", |
| 4013 | ····"u":·"append(T,java.lang.Iterable)" | 4013 | ····"u":·"append(T,java.lang.Iterable)" |
| 4014 | },·{ | 4014 | },·{ |
| 4015 | ····"p":·"org.biojava.bio.program.fastq", | 4015 | ····"p":·"org.biojava.bio.program.fastq", |
| 4016 | ····"c":·"FastqWriter", | 4016 | ····"c":·"FastqWriter", |
| 4017 | ····"l":·"append(T,·Iterable<Fastq>)", | 4017 | ····"l":·"append(T,·Iterable<Fastq>)", |
| 4018 | ····"u":·"append(T,java.lang.Iterable)" | 4018 | ····"u":·"append(T,java.lang.Iterable)" |
| Offset 6168, 15 lines modified | Offset 6168, 15 lines modified | ||
| 6168 | },·{ | 6168 | },·{ |
| 6169 | ····"p":·"org.biojava.utils", | 6169 | ····"p":·"org.biojava.utils", |
| 6170 | ····"c":·"ChangeForwarder", | 6170 | ····"c":·"ChangeForwarder", |
| 6171 | ····"l":·"ChangeForwarder(Object,·ChangeSupport)", | 6171 | ····"l":·"ChangeForwarder(Object,·ChangeSupport)", |
| 6172 | ····"u":·"%3Cinit%3E(java.lang.Object,org.biojava.utils.ChangeSupport)" | 6172 | ····"u":·"%3Cinit%3E(java.lang.Object,org.biojava.utils.ChangeSupport)" |
| 6173 | },·{ | 6173 | },·{ |
| 6174 | ····"p":·"org.biojava.bio.program.sax", | 6174 | ····"p":·"org.biojava.bio.program.sax", |
| 6175 | ····"c":·" | 6175 | ····"c":·"FastaSequenceSAXParser", |
| 6176 | ····"l":·"changeState(int)" | 6176 | ····"l":·"changeState(int)" |
| 6177 | },·{ | 6177 | },·{ |
| 6178 | ····"p":·"org.biojava.utils", | 6178 | ····"p":·"org.biojava.utils", |
| 6179 | ····"c":·"ChangeForwarder", | 6179 | ····"c":·"ChangeForwarder", |
| 6180 | ····"l":·"changeSupport()" | 6180 | ····"l":·"changeSupport()" |
| 6181 | },·{ | 6181 | },·{ |
| 6182 | ····"p":·"org.biojava.utils", | 6182 | ····"p":·"org.biojava.utils", |
| Offset 6289, 15 lines modified | Offset 6289, 15 lines modified | ||
| 6289 | },·{ | 6289 | },·{ |
| 6290 | ····"p":·"org.biojava.bio.program.blast2html", | 6290 | ····"p":·"org.biojava.bio.program.blast2html", |
| 6291 | ····"c":·"Blast2HTMLHandler", | 6291 | ····"c":·"Blast2HTMLHandler", |
| 6292 | ····"l":·"characters(char[],·int,·int)", | 6292 | ····"l":·"characters(char[],·int,·int)", |
| 6293 | ····"u":·"characters(char[],int,int)" | 6293 | ····"u":·"characters(char[],int,int)" |
| 6294 | },·{ | 6294 | },·{ |
| 6295 | ····"p":·"org.biojava.bio.program.sax", | 6295 | ····"p":·"org.biojava.bio.program.sax", |
| 6296 | ····"c":·" | 6296 | ····"c":·"FastaSequenceSAXParser", |
| 6297 | ····"l":·"characters(char[],·int,·int)", | 6297 | ····"l":·"characters(char[],·int,·int)", |
| 6298 | ····"u":·"characters(char[],int,int)" | 6298 | ····"u":·"characters(char[],int,int)" |
| 6299 | },·{ | 6299 | },·{ |
| 6300 | ····"p":·"org.biojava.bio.program.ssbind", | 6300 | ····"p":·"org.biojava.bio.program.ssbind", |
| 6301 | ····"c":·"SeqSimilarityAdapter", | 6301 | ····"c":·"SeqSimilarityAdapter", |
| 6302 | ····"l":·"characters(char[],·int,·int)", | 6302 | ····"l":·"characters(char[],·int,·int)", |
| 6303 | ····"u":·"characters(char[],int,int)" | 6303 | ····"u":·"characters(char[],int,int)" |
| Offset 10199, 15 lines modified | Offset 10199, 15 lines modified | ||
| 10199 | ····"l":·"doRetain()" | 10199 | ····"l":·"doRetain()" |
| 10200 | },·{ | 10200 | },·{ |
| 10201 | ····"p":·"org.biojava.bio.gui.sequence", | 10201 | ····"p":·"org.biojava.bio.gui.sequence", |
| 10202 | ····"c":·"AbstractPeptideDigestRenderer", | 10202 | ····"c":·"AbstractPeptideDigestRenderer", |
| 10203 | ····"l":·"doSortPeptides()" | 10203 | ····"l":·"doSortPeptides()" |
| 10204 | },·{ | 10204 | },·{ |
| 10205 | ····"p":·"org.biojava.bio.symbol", | 10205 | ····"p":·"org.biojava.bio.symbol", |
| 10206 | ····"c":·"Abstract | 10206 | ····"c":·"AbstractManyToOneTranslationTable", |
| 10207 | ····"l":·"doTranslate(Symbol)", | 10207 | ····"l":·"doTranslate(Symbol)", |
| 10208 | ····"u":·"doTranslate(org.biojava.bio.symbol.Symbol)" | 10208 | ····"u":·"doTranslate(org.biojava.bio.symbol.Symbol)" |
| 10209 | },·{ | 10209 | },·{ |
| 10210 | ····"p":·"org.biojava.bio.symbol", | 10210 | ····"p":·"org.biojava.bio.symbol", |
| 10211 | ····"c":·"SimpleManyToOneTranslationTable", | 10211 | ····"c":·"SimpleManyToOneTranslationTable", |
| 10212 | ····"l":·"doTranslate(Symbol)", | 10212 | ····"l":·"doTranslate(Symbol)", |
| 10213 | ····"u":·"doTranslate(org.biojava.bio.symbol.Symbol)" | 10213 | ····"u":·"doTranslate(org.biojava.bio.symbol.Symbol)" |
| Offset 11030, 15 lines modified | Offset 11030, 15 lines modified | ||
| 11030 | ····"l":·"endDocument()" | 11030 | ····"l":·"endDocument()" |
| 11031 | },·{ | 11031 | },·{ |
| 11032 | ····"p":·"org.biojava.bio.program.xml", | 11032 | ····"p":·"org.biojava.bio.program.xml", |
| 11033 | ····"c":·"BaseXMLWriter", | 11033 | ····"c":·"BaseXMLWriter", |
| 11034 | ····"l":·"endElement()" | 11034 | ····"l":·"endElement()" |
| 11035 | },·{ | 11035 | },·{ |
| 11036 | ····"p":·"org.biojava.bio.program.sax", | 11036 | ····"p":·"org.biojava.bio.program.sax", |
| 11037 | ····"c":·" | 11037 | ····"c":·"FastaSequenceSAXParser", |
| 11038 | ····"l":·"endElement(QName)", | 11038 | ····"l":·"endElement(QName)", |
| 11039 | ····"u":·"endElement(org.biojava.bio.program.sax.QName)" | 11039 | ····"u":·"endElement(org.biojava.bio.program.sax.QName)" |
| 11040 | },·{ | 11040 | },·{ |
| 11041 | ····"p":·"org.biojava.bio.program.blast2html", | 11041 | ····"p":·"org.biojava.bio.program.blast2html", |
| 11042 | ····"c":·"Blast2HTMLHandler", | 11042 | ····"c":·"Blast2HTMLHandler", |
| 11043 | ····"l":·"endElement(String,·String,·String)", | 11043 | ····"l":·"endElement(String,·String,·String)", |
| 11044 | ····"u":·"endElement(java.lang.String,java.lang.String,java.lang.String)" | 11044 | ····"u":·"endElement(java.lang.String,java.lang.String,java.lang.String)" |
| Offset 14430, 40 lines modified | Offset 14430, 40 lines modified | ||
| 14430 | ····"l":·"forIndex(int)" | 14430 | ····"l":·"forIndex(int)" |
| 14431 | },·{ | 14431 | },·{ |
| 14432 | ····"p":·"org.biojava.bibliography", | 14432 | ····"p":·"org.biojava.bibliography", |
| 14433 | ····"c":·"BibRef", | 14433 | ····"c":·"BibRef", |
| 14434 | ····"l":·"format" | 14434 | ····"l":·"format" |
| 14435 | },·{ | 14435 | },·{ |
| 14436 | ····"p":·"org.biojava.bio.seq.io", | 14436 | ····"p":·"org.biojava.bio.seq.io", |
| 14437 | ····"c":·" | 14437 | ····"c":·"ProteinRefSeqFileFormer", |
| 14438 | ····"l":·"formatLocation(Feature)", | 14438 | ····"l":·"formatLocation(Feature)", |
| 14439 | ····"u":·"formatLocation(org.biojava.bio.seq.Feature)" | 14439 | ····"u":·"formatLocation(org.biojava.bio.seq.Feature)" |
| 14440 | },·{ | 14440 | },·{ |
| 14441 | ····"p":·"org.biojava.bio.seq.io", | 14441 | ····"p":·"org.biojava.bio.seq.io", |
| 14442 | ····"c":·"SeqFileFormer", | 14442 | ····"c":·"SeqFileFormer", |
| 14443 | ····"l":·"formatLocation(Feature)", | 14443 | ····"l":·"formatLocation(Feature)", |
| 14444 | ····"u":·"formatLocation(org.biojava.bio.seq.Feature)" | 14444 | ····"u":·"formatLocation(org.biojava.bio.seq.Feature)" |
| 14445 | },·{ | 14445 | },·{ |
| 14446 | ····"p":·"org.biojava.bio.seq.io", | 14446 | ····"p":·"org.biojava.bio.seq.io", |
| 14447 | ····"c":·"SwissprotFileFormer", | 14447 | ····"c":·"SwissprotFileFormer", |
| 14448 | ····"l":·"formatLocation(Feature)", | 14448 | ····"l":·"formatLocation(Feature)", |
| 14449 | ····"u":·"formatLocation(org.biojava.bio.seq.Feature)" | 14449 | ····"u":·"formatLocation(org.biojava.bio.seq.Feature)" |
| 14450 | },·{ | 14450 | },·{ |
| Max diff block lines reached; 17590/22001 bytes (79.95%) of diff not shown. | |||
| Offset 1, 17 lines modified | Offset 1, 17 lines modified | ||
| 1 | ··Streams:···········1 | 1 | ··Streams:···········1 |
| 2 | ··Blocks:············5 | 2 | ··Blocks:············5 |
| 3 | ··Compressed·size:···3919. | 3 | ··Compressed·size:···3919.8·KiB·(4013836·B) |
| 4 | ··Uncompressed·size:·104.1·MiB·(109107200·B) | 4 | ··Uncompressed·size:·104.1·MiB·(109107200·B) |
| 5 | ··Ratio:·············0.037 | 5 | ··Ratio:·············0.037 |
| 6 | ··Check:·············CRC64 | 6 | ··Check:·············CRC64 |
| 7 | ··Stream·Padding:····0·B | 7 | ··Stream·Padding:····0·B |
| 8 | ··Streams: | 8 | ··Streams: |
| 9 | ····Stream····Blocks······CompOffset····UncompOffset········CompSize······UncompSize··Ratio··Check······Padding | 9 | ····Stream····Blocks······CompOffset····UncompOffset········CompSize······UncompSize··Ratio··Check······Padding |
| 10 | ·········1·········5···············0···············0·········40138 | 10 | ·········1·········5···············0···············0·········4013836·······109107200··0.037··CRC64············0 |
| 11 | ··Blocks: | 11 | ··Blocks: |
| 12 | ····Stream·····Block······CompOffset····UncompOffset·······TotalSize······UncompSize··Ratio··Check | 12 | ····Stream·····Block······CompOffset····UncompOffset·······TotalSize······UncompSize··Ratio··Check |
| 13 | ·········1·········1··············12···············0·········10477 | 13 | ·········1·········1··············12···············0·········1047736········25165824··0.042··CRC64 |
| 14 | ·········1·········2·········10477 | 14 | ·········1·········2·········1047748········25165824··········685436········25165824··0.027··CRC64 |
| 15 | ·········1·········3·········17331 | 15 | ·········1·········3·········1733184········50331648··········976772········25165824··0.039··CRC64 |
| 16 | ·········1·········4·········27099 | 16 | ·········1·········4·········2709956········75497472·········1005668········25165824··0.040··CRC64 |
| 17 | ·········1·········5·········37156 | 17 | ·········1·········5·········3715624·······100663296··········298156·········8443904··0.035··CRC64 |