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3017 <dd>3017 <dd>
3018 <div·class="block">Create·a·bean·from·an·XML·file,·then·attempt·to·enter·it.</div>3018 <div·class="block">Create·a·bean·from·an·XML·file,·then·attempt·to·enter·it.</div>
3019 </dd>3019 </dd>
3020 <dt><a·href="org/biojava/utils/xml/AppBeanRunner.html#%3Cinit%3E()"·class="member-name-link">AppBeanRunner()</a>·-·Constructor·for·class·org.biojava.utils.xml.<a·href="org/biojava/utils/xml/AppBeanRunner.html"·title="class·in·org.biojava.utils.xml">AppBeanRunner</a></dt>3020 <dt><a·href="org/biojava/utils/xml/AppBeanRunner.html#%3Cinit%3E()"·class="member-name-link">AppBeanRunner()</a>·-·Constructor·for·class·org.biojava.utils.xml.<a·href="org/biojava/utils/xml/AppBeanRunner.html"·title="class·in·org.biojava.utils.xml">AppBeanRunner</a></dt>
3021 <dd>&nbsp;</dd>3021 <dd>&nbsp;</dd>
3022 <dt><a·href="org/biojava/utils/automata/NfaSubModel.html#append(org.biojava.utils.automata.NfaSubModel)"·class="member-name-link">append(NfaSubModel)</a>·-·Method·in·class·org.biojava.utils.automata.<a·href="org/biojava/utils/automata/NfaSubModel.html"·title="class·in·org.biojava.utils.automata">NfaSubModel</a></dt>3022 <dt><a·href="org/biojava/utils/automata/NfaSubModel.html#append(org.biojava.utils.automata.NfaSubModel)"·class="member-name-link">append(NfaSubModel)</a>·-·Method·in·class·org.biojava.utils.automata.<a·href="org/biojava/utils/automata/NfaSubModel.html"·title="class·in·org.biojava.utils.automata">NfaSubModel</a></dt>
3023 <dd>&nbsp;</dd>3023 <dd>&nbsp;</dd>
3024 <dt><a·href="org/biojava/bio/program/fastq/SangerFastqWriter.html#append(T,java.lang.Iterable)"·class="member-name-link">append(T,·Iterable&lt;Fastq&gt;)</a>·-·Method·in·class·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/SangerFastqWriter.html"·title="class·in·org.biojava.bi[·...·truncated·by·diffoscope;·len:·23,·SHA:·b850d16508fe237e228028a31d353b0c9786543866b4cfc2c135bd3245517eeb·...·]FastqWriter</a></dt>3024 <dt><a·href="org/biojava/bio/program/fastq/IlluminaFastqWriter.html#append(T,java.lang.Iterable)"·class="member-name-link">append(T,·Iterable&lt;Fastq&gt;)</a>·-·Method·in·class·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/IlluminaFastqWriter.html"·title="class·in·org.biojav[·...·truncated·by·diffoscope;·len:·29,·SHA:·9e77e404da328ba858143229c08d1a780e77383d80c9e377cba8b0b7b5adc543·...·]FastqWriter</a></dt>
3025 <dd>&nbsp;</dd>3025 <dd>&nbsp;</dd>
3026 <dt><a·href="org/biojava/bio/program/fastq/FastqWriter.html#append(T,java.lang.Iterable)"·class="member-name-link">append(T,·Iterable&lt;Fastq&gt;)</a>·-·Method·in·interface·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/FastqWriter.html"·title="interface·in·org.biojava.bio.program.fastq">FastqWriter</a></dt>3026 <dt><a·href="org/biojava/bio/program/fastq/FastqWriter.html#append(T,java.lang.Iterable)"·class="member-name-link">append(T,·Iterable&lt;Fastq&gt;)</a>·-·Method·in·interface·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/FastqWriter.html"·title="interface·in·org.biojava.bio.program.fastq">FastqWriter</a></dt>
3027 <dd>3027 <dd>
3028 <div·class="block">Append·the·specified·FASTQ·formatted·sequences·to·the·specified·appendable.</div>3028 <div·class="block">Append·the·specified·FASTQ·formatted·sequences·to·the·specified·appendable.</div>
3029 </dd>3029 </dd>
3030 <dt><a·href="org/biojava/bio/program/fastq/SangerFastqWriter.html#append(T,org.biojava.bio.program.fastq.Fastq...)"·class="member-name-link">append(T,·Fastq...)</a>·-·Method·in·class·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/SangerFastqWriter.html"·title="class·in·org.bio[·...·truncated·by·diffoscope;·len:·30,·SHA:·a624089fb2c7d8b70b42de02535ee7de650002bb71c863f002bcc035599cb4c6·...·]FastqWriter</a></dt>3030 <dt><a·href="org/biojava/bio/program/fastq/IlluminaFastqWriter.html#append(T,org.biojava.bio.program.fastq.Fastq...)"·class="member-name-link">append(T,·Fastq...)</a>·-·Method·in·class·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/IlluminaFastqWriter.html"·title="class·in·org[·...·truncated·by·diffoscope;·len:·36,·SHA:·0db718adb3d279c17eafe445e2fd70bbeabb473173cea4ec5728f0ed571a1954·...·]FastqWriter</a></dt>
3031 <dd>&nbsp;</dd>3031 <dd>&nbsp;</dd>
3032 <dt><a·href="org/biojava/bio/program/fastq/FastqWriter.html#append(T,org.biojava.bio.program.fastq.Fastq...)"·class="member-name-link">append(T,·Fastq...)</a>·-·Method·in·interface·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/FastqWriter.html"·title="interface·in·org.biojava.bio.program.fastq">FastqWriter</a></dt>3032 <dt><a·href="org/biojava/bio/program/fastq/FastqWriter.html#append(T,org.biojava.bio.program.fastq.Fastq...)"·class="member-name-link">append(T,·Fastq...)</a>·-·Method·in·interface·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/FastqWriter.html"·title="interface·in·org.biojava.bio.program.fastq">FastqWriter</a></dt>
3033 <dd>3033 <dd>
3034 <div·class="block">Append·the·specified·FASTQ·formatted·sequences·to·the·specified·appendable.</div>3034 <div·class="block">Append·the·specified·FASTQ·formatted·sequences·to·the·specified·appendable.</div>
3035 </dd>3035 </dd>
3036 <dt><a·href="org/biojavax/bio/phylo/io/nexus/CharactersBlock.html#appendMatrixData(java.lang.String,java.lang.Object)"·class="member-name-link">appendMatrixData(String,·Object)</a>·-·Method·in·class·org.biojavax.bio.phylo.io.nexus.<a·href="org/biojavax/bio/phylo/io/nexus/CharactersBlock.html"·title="class·in·org.biojavax.bio.phylo.io.nexus">CharactersBlock</a></dt>3036 <dt><a·href="org/biojavax/bio/phylo/io/nexus/CharactersBlock.html#appendMatrixData(java.lang.String,java.lang.Object)"·class="member-name-link">appendMatrixData(String,·Object)</a>·-·Method·in·class·org.biojavax.bio.phylo.io.nexus.<a·href="org/biojavax/bio/phylo/io/nexus/CharactersBlock.html"·title="class·in·org.biojavax.bio.phylo.io.nexus">CharactersBlock</a></dt>
3037 <dd>&nbsp;</dd>3037 <dd>&nbsp;</dd>
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html2text {}
    
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2788 ··AppBeanRunner·-·Class·in·org.biojava.utils.xml2788 ··AppBeanRunner·-·Class·in·org.biojava.utils.xml
2789 ······Create·a·bean·from·an·XML·file,·then·attempt·to·enter·it.2789 ······Create·a·bean·from·an·XML·file,·then·attempt·to·enter·it.
2790 ··AppBeanRunner()·-·Constructor·for·class·org.biojava.utils.xml.AppBeanRunner2790 ··AppBeanRunner()·-·Constructor·for·class·org.biojava.utils.xml.AppBeanRunner
2791 ······ 2791 ······ 
2792 ··append(NfaSubModel)·-·Method·in·class·org.biojava.utils.automata.NfaSubModel2792 ··append(NfaSubModel)·-·Method·in·class·org.biojava.utils.automata.NfaSubModel
2793 ······ 2793 ······ 
2794 ··append(T,_Iterable<Fastq>)·-·Method·in·class2794 ··append(T,_Iterable<Fastq>)·-·Method·in·class
2795 ··org.biojava.bio.program.fastq.SangerFastqWriter2795 ··org.biojava.bio.program.fastq.IlluminaFastqWriter
2796 ······ 2796 ······ 
2797 ··append(T,_Iterable<Fastq>)·-·Method·in·interface2797 ··append(T,_Iterable<Fastq>)·-·Method·in·interface
2798 ··org.biojava.bio.program.fastq.FastqWriter2798 ··org.biojava.bio.program.fastq.FastqWriter
2799 ······Append·the·specified·FASTQ·formatted·sequences·to·the·specified2799 ······Append·the·specified·FASTQ·formatted·sequences·to·the·specified
2800 ······appendable.2800 ······appendable.
2801 ··append(T,_Fastq...)·-·Method·in·class2801 ··append(T,_Fastq...)·-·Method·in·class
2802 ··org.biojava.bio.program.fastq.SangerFastqWriter2802 ··org.biojava.bio.program.fastq.IlluminaFastqWriter
2803 ······ 2803 ······ 
2804 ··append(T,_Fastq...)·-·Method·in·interface2804 ··append(T,_Fastq...)·-·Method·in·interface
2805 ··org.biojava.bio.program.fastq.FastqWriter2805 ··org.biojava.bio.program.fastq.FastqWriter
2806 ······Append·the·specified·FASTQ·formatted·sequences·to·the·specified2806 ······Append·the·specified·FASTQ·formatted·sequences·to·the·specified
2807 ······appendable.2807 ······appendable.
2808 ··appendMatrixData(String,_Object)·-·Method·in·class2808 ··appendMatrixData(String,_Object)·-·Method·in·class
2809 ··org.biojavax.bio.phylo.io.nexus.CharactersBlock2809 ··org.biojavax.bio.phylo.io.nexus.CharactersBlock
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3994 },·{3994 },·{
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3996 ····"c":·"NfaSubModel",3996 ····"c":·"NfaSubModel",
3997 ····"l":·"append(NfaSubModel)",3997 ····"l":·"append(NfaSubModel)",
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3999 },·{3999 },·{
4000 ····"p":·"org.biojava.bio.program.fastq",4000 ····"p":·"org.biojava.bio.program.fastq",
4001 ····"c":·"SangerFastqWriter",4001 ····"c":·"IlluminaFastqWriter",
4002 ····"l":·"append(T,·Fastq...)",4002 ····"l":·"append(T,·Fastq...)",
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4006 ····"c":·"FastqWriter",4006 ····"c":·"FastqWriter",
4007 ····"l":·"append(T,·Fastq...)",4007 ····"l":·"append(T,·Fastq...)",
4008 ····"u":·"append(T,org.biojava.bio.program.fastq.Fastq...)"4008 ····"u":·"append(T,org.biojava.bio.program.fastq.Fastq...)"
4009 },·{4009 },·{
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4011 ····"c":·"SangerFastqWriter",4011 ····"c":·"IlluminaFastqWriter",
4012 ····"l":·"append(T,·Iterable<Fastq>)",4012 ····"l":·"append(T,·Iterable<Fastq>)",
4013 ····"u":·"append(T,java.lang.Iterable)"4013 ····"u":·"append(T,java.lang.Iterable)"
4014 },·{4014 },·{
4015 ····"p":·"org.biojava.bio.program.fastq",4015 ····"p":·"org.biojava.bio.program.fastq",
4016 ····"c":·"FastqWriter",4016 ····"c":·"FastqWriter",
4017 ····"l":·"append(T,·Iterable<Fastq>)",4017 ····"l":·"append(T,·Iterable<Fastq>)",
4018 ····"u":·"append(T,java.lang.Iterable)"4018 ····"u":·"append(T,java.lang.Iterable)"