Offset 1, 4 lines modified | Offset 1, 4 lines modified | ||
1 | ·f | 1 | ·fea2aa4173b98c8ed5c3bf728cf09fdc·4132572·doc·optional·libbiojava-java-doc_1.9.7+dfsg-1_all.deb |
2 | ·ab782163f0e532230201e8c8b6fd1191·5512·java·optional·libbiojava-java_1.9.7+dfsg-1_all.deb | 2 | ·ab782163f0e532230201e8c8b6fd1191·5512·java·optional·libbiojava-java_1.9.7+dfsg-1_all.deb |
3 | ·0088c3dc56fe7264a9179c89ebaae3d1·3154416·java·optional·libbiojava1.9-java_1.9.7+dfsg-1_all.deb | 3 | ·0088c3dc56fe7264a9179c89ebaae3d1·3154416·java·optional·libbiojava1.9-java_1.9.7+dfsg-1_all.deb |
Offset 1, 3 lines modified | Offset 1, 3 lines modified | ||
1 | -rw-r--r--···0········0········0········4·2023-11-29·07:09:37.000000·debian-binary | 1 | -rw-r--r--···0········0········0········4·2023-11-29·07:09:37.000000·debian-binary |
2 | -rw-r--r--···0········0········0···1185 | 2 | -rw-r--r--···0········0········0···118536·2023-11-29·07:09:37.000000·control.tar.xz |
3 | -rw-r--r--···0········0········0··40138 | 3 | -rw-r--r--···0········0········0··4013844·2023-11-29·07:09:37.000000·data.tar.xz |
Offset 6, 22 lines modified | Offset 6, 22 lines modified | ||
6 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/ | 6 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/ |
7 | -rw-r--r--···0·root·········(0)·root·········(0)···588936·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/allclasses-index.html | 7 | -rw-r--r--···0·root·········(0)·root·········(0)···588936·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/allclasses-index.html |
8 | -rw-r--r--···0·root·········(0)·root·········(0)····27769·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/allpackages-index.html | 8 | -rw-r--r--···0·root·········(0)·root·········(0)····27769·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/allpackages-index.html |
9 | -rw-r--r--···0·root·········(0)·root·········(0)···460903·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/constant-values.html | 9 | -rw-r--r--···0·root·········(0)·root·········(0)···460903·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/constant-values.html |
10 | -rw-r--r--···0·root·········(0)·root·········(0)····39572·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/deprecated-list.html | 10 | -rw-r--r--···0·root·········(0)·root·········(0)····39572·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/deprecated-list.html |
11 | -rw-r--r--···0·root·········(0)·root·········(0)·····2568·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/element-list | 11 | -rw-r--r--···0·root·········(0)·root·········(0)·····2568·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/element-list |
12 | -rw-r--r--···0·root·········(0)·root·········(0)····10486·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/help-doc.html | 12 | -rw-r--r--···0·root·········(0)·root·········(0)····10486·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/help-doc.html |
13 | -rw-r--r--···0·root·········(0)·root·········(0)··52051 | 13 | -rw-r--r--···0·root·········(0)·root·········(0)··5205190·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/index-all.html |
14 | -rw-r--r--···0·root·········(0)·root·········(0)····36274·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/index.html | 14 | -rw-r--r--···0·root·········(0)·root·········(0)····36274·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/index.html |
15 | -rw-r--r--···0·root·········(0)·root·········(0)·····1498·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/jquery-ui.overrides.css | 15 | -rw-r--r--···0·root·········(0)·root·········(0)·····1498·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/jquery-ui.overrides.css |
16 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/ | 16 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/ |
17 | -rw-r--r--···0·root·········(0)·root·········(0)·····1522·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/ASSEMBLY_EXCEPTION | 17 | -rw-r--r--···0·root·········(0)·root·········(0)·····1522·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/ASSEMBLY_EXCEPTION |
18 | -rw-r--r--···0·root·········(0)·root·········(0)·····2936·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/jquery.md | 18 | -rw-r--r--···0·root·········(0)·root·········(0)·····2936·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/jquery.md |
19 | -rw-r--r--···0·root·········(0)·root·········(0)·····1870·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/jqueryUI.md | 19 | -rw-r--r--···0·root·········(0)·root·········(0)·····1870·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/legal/jqueryUI.md |
20 | -rw-r--r--···0·root·········(0)·root·········(0)··13988 | 20 | -rw-r--r--···0·root·········(0)·root·········(0)··1398895·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/member-search-index.js |
21 | -rw-r--r--···0·root·········(0)·root·········(0)·······45·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/module-search-index.js | 21 | -rw-r--r--···0·root·········(0)·root·········(0)·······45·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/module-search-index.js |
22 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/ | 22 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/ |
23 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/ | 23 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/ |
24 | -rw-r--r--···0·root·········(0)·root·········(0)····10002·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/App.html | 24 | -rw-r--r--···0·root·········(0)·root·········(0)····10002·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/App.html |
25 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/bibliography/ | 25 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/bibliography/ |
26 | -rw-r--r--···0·root·········(0)·root·········(0)····34030·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/bibliography/BibRef.html | 26 | -rw-r--r--···0·root·········(0)·root·········(0)····34030·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/bibliography/BibRef.html |
27 | -rw-r--r--···0·root·········(0)·root·········(0)····14355·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/bibliography/BibRefException.html | 27 | -rw-r--r--···0·root·········(0)·root·········(0)····14355·2023-11-29·07:09:37.000000·./usr/share/doc/libbiojava-java/apidocs/org/biojava/bibliography/BibRefException.html |
Offset 3017, 21 lines modified | Offset 3017, 21 lines modified | ||
3017 | <dd> | 3017 | <dd> |
3018 | <div·class="block">Create·a·bean·from·an·XML·file,·then·attempt·to·enter·it.</div> | 3018 | <div·class="block">Create·a·bean·from·an·XML·file,·then·attempt·to·enter·it.</div> |
3019 | </dd> | 3019 | </dd> |
3020 | <dt><a·href="org/biojava/utils/xml/AppBeanRunner.html#%3Cinit%3E()"·class="member-name-link">AppBeanRunner()</a>·-·Constructor·for·class·org.biojava.utils.xml.<a·href="org/biojava/utils/xml/AppBeanRunner.html"·title="class·in·org.biojava.utils.xml">AppBeanRunner</a></dt> | 3020 | <dt><a·href="org/biojava/utils/xml/AppBeanRunner.html#%3Cinit%3E()"·class="member-name-link">AppBeanRunner()</a>·-·Constructor·for·class·org.biojava.utils.xml.<a·href="org/biojava/utils/xml/AppBeanRunner.html"·title="class·in·org.biojava.utils.xml">AppBeanRunner</a></dt> |
3021 | <dd> </dd> | 3021 | <dd> </dd> |
3022 | <dt><a·href="org/biojava/utils/automata/NfaSubModel.html#append(org.biojava.utils.automata.NfaSubModel)"·class="member-name-link">append(NfaSubModel)</a>·-·Method·in·class·org.biojava.utils.automata.<a·href="org/biojava/utils/automata/NfaSubModel.html"·title="class·in·org.biojava.utils.automata">NfaSubModel</a></dt> | 3022 | <dt><a·href="org/biojava/utils/automata/NfaSubModel.html#append(org.biojava.utils.automata.NfaSubModel)"·class="member-name-link">append(NfaSubModel)</a>·-·Method·in·class·org.biojava.utils.automata.<a·href="org/biojava/utils/automata/NfaSubModel.html"·title="class·in·org.biojava.utils.automata">NfaSubModel</a></dt> |
3023 | <dd> </dd> | 3023 | <dd> </dd> |
3024 | <dt><a·href="org/biojava/bio/program/fastq/ | 3024 | <dt><a·href="org/biojava/bio/program/fastq/IlluminaFastqWriter.html#append(T,java.lang.Iterable)"·class="member-name-link">append(T,·Iterable<Fastq>)</a>·-·Method·in·class·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/IlluminaFastqWriter.html"·title="class·in·org.biojav[·...·truncated·by·diffoscope;·len:·29,·SHA:·9e77e404da328ba858143229c08d1a780e77383d80c9e377cba8b0b7b5adc543·...·]FastqWriter</a></dt> |
3025 | <dd> </dd> | 3025 | <dd> </dd> |
3026 | <dt><a·href="org/biojava/bio/program/fastq/FastqWriter.html#append(T,java.lang.Iterable)"·class="member-name-link">append(T,·Iterable<Fastq>)</a>·-·Method·in·interface·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/FastqWriter.html"·title="interface·in·org.biojava.bio.program.fastq">FastqWriter</a></dt> | 3026 | <dt><a·href="org/biojava/bio/program/fastq/FastqWriter.html#append(T,java.lang.Iterable)"·class="member-name-link">append(T,·Iterable<Fastq>)</a>·-·Method·in·interface·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/FastqWriter.html"·title="interface·in·org.biojava.bio.program.fastq">FastqWriter</a></dt> |
3027 | <dd> | 3027 | <dd> |
3028 | <div·class="block">Append·the·specified·FASTQ·formatted·sequences·to·the·specified·appendable.</div> | 3028 | <div·class="block">Append·the·specified·FASTQ·formatted·sequences·to·the·specified·appendable.</div> |
3029 | </dd> | 3029 | </dd> |
3030 | <dt><a·href="org/biojava/bio/program/fastq/ | 3030 | <dt><a·href="org/biojava/bio/program/fastq/IlluminaFastqWriter.html#append(T,org.biojava.bio.program.fastq.Fastq...)"·class="member-name-link">append(T,·Fastq...)</a>·-·Method·in·class·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/IlluminaFastqWriter.html"·title="class·in·org[·...·truncated·by·diffoscope;·len:·36,·SHA:·0db718adb3d279c17eafe445e2fd70bbeabb473173cea4ec5728f0ed571a1954·...·]FastqWriter</a></dt> |
3031 | <dd> </dd> | 3031 | <dd> </dd> |
3032 | <dt><a·href="org/biojava/bio/program/fastq/FastqWriter.html#append(T,org.biojava.bio.program.fastq.Fastq...)"·class="member-name-link">append(T,·Fastq...)</a>·-·Method·in·interface·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/FastqWriter.html"·title="interface·in·org.biojava.bio.program.fastq">FastqWriter</a></dt> | 3032 | <dt><a·href="org/biojava/bio/program/fastq/FastqWriter.html#append(T,org.biojava.bio.program.fastq.Fastq...)"·class="member-name-link">append(T,·Fastq...)</a>·-·Method·in·interface·org.biojava.bio.program.fastq.<a·href="org/biojava/bio/program/fastq/FastqWriter.html"·title="interface·in·org.biojava.bio.program.fastq">FastqWriter</a></dt> |
3033 | <dd> | 3033 | <dd> |
3034 | <div·class="block">Append·the·specified·FASTQ·formatted·sequences·to·the·specified·appendable.</div> | 3034 | <div·class="block">Append·the·specified·FASTQ·formatted·sequences·to·the·specified·appendable.</div> |
3035 | </dd> | 3035 | </dd> |
3036 | <dt><a·href="org/biojavax/bio/phylo/io/nexus/CharactersBlock.html#appendMatrixData(java.lang.String,java.lang.Object)"·class="member-name-link">appendMatrixData(String,·Object)</a>·-·Method·in·class·org.biojavax.bio.phylo.io.nexus.<a·href="org/biojavax/bio/phylo/io/nexus/CharactersBlock.html"·title="class·in·org.biojavax.bio.phylo.io.nexus">CharactersBlock</a></dt> | 3036 | <dt><a·href="org/biojavax/bio/phylo/io/nexus/CharactersBlock.html#appendMatrixData(java.lang.String,java.lang.Object)"·class="member-name-link">appendMatrixData(String,·Object)</a>·-·Method·in·class·org.biojavax.bio.phylo.io.nexus.<a·href="org/biojavax/bio/phylo/io/nexus/CharactersBlock.html"·title="class·in·org.biojavax.bio.phylo.io.nexus">CharactersBlock</a></dt> |
3037 | <dd> </dd> | 3037 | <dd> </dd> |
Offset 2788, 22 lines modified | Offset 2788, 22 lines modified | ||
2788 | ··AppBeanRunner·-·Class·in·org.biojava.utils.xml | 2788 | ··AppBeanRunner·-·Class·in·org.biojava.utils.xml |
2789 | ······Create·a·bean·from·an·XML·file,·then·attempt·to·enter·it. | 2789 | ······Create·a·bean·from·an·XML·file,·then·attempt·to·enter·it. |
2790 | ··AppBeanRunner()·-·Constructor·for·class·org.biojava.utils.xml.AppBeanRunner | 2790 | ··AppBeanRunner()·-·Constructor·for·class·org.biojava.utils.xml.AppBeanRunner |
2791 | ······ | 2791 | ······ |
2792 | ··append(NfaSubModel)·-·Method·in·class·org.biojava.utils.automata.NfaSubModel | 2792 | ··append(NfaSubModel)·-·Method·in·class·org.biojava.utils.automata.NfaSubModel |
2793 | ······ | 2793 | ······ |
2794 | ··append(T,_Iterable<Fastq>)·-·Method·in·class | 2794 | ··append(T,_Iterable<Fastq>)·-·Method·in·class |
2795 | ··org.biojava.bio.program.fastq. | 2795 | ··org.biojava.bio.program.fastq.IlluminaFastqWriter |
2796 | ······ | 2796 | ······ |
2797 | ··append(T,_Iterable<Fastq>)·-·Method·in·interface | 2797 | ··append(T,_Iterable<Fastq>)·-·Method·in·interface |
2798 | ··org.biojava.bio.program.fastq.FastqWriter | 2798 | ··org.biojava.bio.program.fastq.FastqWriter |
2799 | ······Append·the·specified·FASTQ·formatted·sequences·to·the·specified | 2799 | ······Append·the·specified·FASTQ·formatted·sequences·to·the·specified |
2800 | ······appendable. | 2800 | ······appendable. |
2801 | ··append(T,_Fastq...)·-·Method·in·class | 2801 | ··append(T,_Fastq...)·-·Method·in·class |
2802 | ··org.biojava.bio.program.fastq. | 2802 | ··org.biojava.bio.program.fastq.IlluminaFastqWriter |
2803 | ······ | 2803 | ······ |
2804 | ··append(T,_Fastq...)·-·Method·in·interface | 2804 | ··append(T,_Fastq...)·-·Method·in·interface |
2805 | ··org.biojava.bio.program.fastq.FastqWriter | 2805 | ··org.biojava.bio.program.fastq.FastqWriter |
2806 | ······Append·the·specified·FASTQ·formatted·sequences·to·the·specified | 2806 | ······Append·the·specified·FASTQ·formatted·sequences·to·the·specified |
2807 | ······appendable. | 2807 | ······appendable. |
2808 | ··appendMatrixData(String,_Object)·-·Method·in·class | 2808 | ··appendMatrixData(String,_Object)·-·Method·in·class |
2809 | ··org.biojavax.bio.phylo.io.nexus.CharactersBlock | 2809 | ··org.biojavax.bio.phylo.io.nexus.CharactersBlock |
Offset 3994, 25 lines modified | Offset 3994, 25 lines modified | ||
3994 | },·{ | 3994 | },·{ |
3995 | ····"p":·"org.biojava.utils.automata", | 3995 | ····"p":·"org.biojava.utils.automata", |
3996 | ····"c":·"NfaSubModel", | 3996 | ····"c":·"NfaSubModel", |
3997 | ····"l":·"append(NfaSubModel)", | 3997 | ····"l":·"append(NfaSubModel)", |
3998 | ····"u":·"append(org.biojava.utils.automata.NfaSubModel)" | 3998 | ····"u":·"append(org.biojava.utils.automata.NfaSubModel)" |
3999 | },·{ | 3999 | },·{ |
4000 | ····"p":·"org.biojava.bio.program.fastq", | 4000 | ····"p":·"org.biojava.bio.program.fastq", |
4001 | ····"c":·" | 4001 | ····"c":·"IlluminaFastqWriter", |
4002 | ····"l":·"append(T,·Fastq...)", | 4002 | ····"l":·"append(T,·Fastq...)", |
4003 | ····"u":·"append(T,org.biojava.bio.program.fastq.Fastq...)" | 4003 | ····"u":·"append(T,org.biojava.bio.program.fastq.Fastq...)" |
4004 | },·{ | 4004 | },·{ |
4005 | ····"p":·"org.biojava.bio.program.fastq", | 4005 | ····"p":·"org.biojava.bio.program.fastq", |
4006 | ····"c":·"FastqWriter", | 4006 | ····"c":·"FastqWriter", |
4007 | ····"l":·"append(T,·Fastq...)", | 4007 | ····"l":·"append(T,·Fastq...)", |
4008 | ····"u":·"append(T,org.biojava.bio.program.fastq.Fastq...)" | 4008 | ····"u":·"append(T,org.biojava.bio.program.fastq.Fastq...)" |
4009 | },·{ | 4009 | },·{ |
4010 | ····"p":·"org.biojava.bio.program.fastq", | 4010 | ····"p":·"org.biojava.bio.program.fastq", |
4011 | ····"c":·" | 4011 | ····"c":·"IlluminaFastqWriter", |
4012 | ····"l":·"append(T,·Iterable<Fastq>)", | 4012 | ····"l":·"append(T,·Iterable<Fastq>)", |
4013 | ····"u":·"append(T,java.lang.Iterable)" | 4013 | ····"u":·"append(T,java.lang.Iterable)" |
4014 | },·{ | 4014 | },·{ |
4015 | ····"p":·"org.biojava.bio.program.fastq", | 4015 | ····"p":·"org.biojava.bio.program.fastq", |
4016 | ····"c":·"FastqWriter", | 4016 | ····"c":·"FastqWriter", |
4017 | ····"l":·"append(T,·Iterable<Fastq>)", | 4017 | ····"l":·"append(T,·Iterable<Fastq>)", |
4018 | ····"u":·"append(T,java.lang.Iterable)" | 4018 | ····"u":·"append(T,java.lang.Iterable)" |