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133 ········<li·class="right"·>133 ········<li·class="right"·>
134 ··········<a·href="../py-modindex.html"·title="Python·Module·Index"134 ··········<a·href="../py-modindex.html"·title="Python·Module·Index"
135 ·············>modules</a>·|</li>135 ·············>modules</a>·|</li>
136 ········<li·class="right"·>136 ········<li·class="right"·>
137 ··········<a·href="note_about_discussion.html"·title="A·note·about·the·discussion·section"137 ··········<a·href="note_about_discussion.html"·title="A·note·about·the·discussion·section"
138 ·············>next</a>·|</li>138 ·············>next</a>·|</li>
139 ········<li·class="right"·>139 ········<li·class="right"·>
140 ··········<a·href="../examples/multi_taper_spectral_estimation.html"·title="Multitaper·spectral·estimation"140 ··········<a·href="../examples/ar_model_fit.html"·title="Fitting·an·MAR·model:·analyzer·interface"
141 ·············>previous</a>·|</li>141 ·············>previous</a>·|</li>
142 ··<li><a·href="../index.html">Nitime·Home</a>·|&nbsp;</li>142 ··<li><a·href="../index.html">Nitime·Home</a>·|&nbsp;</li>
  
143 ··········<li·class="nav-item·nav-item-1"><a·href="../documentation.html"·>Nitime·Documentation</a>·&#187;</li>143 ··········<li·class="nav-item·nav-item-1"><a·href="../documentation.html"·>Nitime·Documentation</a>·&#187;</li>
144 ········<li·class="nav-item·nav-item-this"><a·href="">Neuroimaging·in·Python</a></li>·144 ········<li·class="nav-item·nav-item-this"><a·href="">Neuroimaging·in·Python</a></li>·
145 ······</ul>145 ······</ul>
146 ····</div>146 ····</div>
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71 <li·class="toctree-l2"><a·class="reference·internal"·href="whatsnew/version0.6.html">Release·notes·for·nitime·version·0.6</a></li>71 <li·class="toctree-l2"><a·class="reference·internal"·href="whatsnew/version0.6.html">Release·notes·for·nitime·version·0.6</a></li>
72 <li·class="toctree-l2"><a·class="reference·internal"·href="whatsnew/version0.5.html">Release·notes·for·nitime·version·0.5</a></li>72 <li·class="toctree-l2"><a·class="reference·internal"·href="whatsnew/version0.5.html">Release·notes·for·nitime·version·0.5</a></li>
73 <li·class="toctree-l2"><a·class="reference·internal"·href="whatsnew/version0.4.html">Release·notes·for·nitime·version·0.4</a></li>73 <li·class="toctree-l2"><a·class="reference·internal"·href="whatsnew/version0.4.html">Release·notes·for·nitime·version·0.4</a></li>
74 <li·class="toctree-l2"><a·class="reference·internal"·href="whatsnew/version0.3.html">Release·notes·for·nitime·version·0.3</a></li>74 <li·class="toctree-l2"><a·class="reference·internal"·href="whatsnew/version0.3.html">Release·notes·for·nitime·version·0.3</a></li>
75 </ul>75 </ul>
76 </li>76 </li>
77 <li·class="toctree-l1"><a·class="reference·internal"·href="examples/index.html">Examples</a><ul>77 <li·class="toctree-l1"><a·class="reference·internal"·href="examples/index.html">Examples</a><ul>
78 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_model_fit.html">Fitting·an·MAR·model:·analyzer·interface</a></li>78 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/granger_fmri.html">Granger·‘causality’·of·fMRI·data</a></li>
 79 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/snr_example.html">Calculation·of·signal-to-noise·and·information</a></li>
79 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/mtm_baseband_power.html">Multitaper·method·for·baseband·demodulation</a></li>80 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/mtm_baseband_power.html">Multitaper·method·for·baseband·demodulation</a></li>
 81 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/grasshopper.html">Auditory·processing·in·grasshoppers</a></li>
 82 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_2vars.html">Multivariate·auto-regressive·modeling</a></li>
 83 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_1var.html">Fitting·an·AR·model:·algorithm·module·interface</a></li>
80 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/event_related_fmri.html">Event-related·fMRI</a></li>84 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/event_related_fmri.html">Event-related·fMRI</a></li>
81 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/snr_example.html">Calculation·of·signal-to-noise·and·information</a></li> 
82 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_3vars.html">Multivariate·auto-regressive·modeling·-·3·variables</a></li>85 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_3vars.html">Multivariate·auto-regressive·modeling·-·3·variables</a></li>
83 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/resting_state_fmri.html">Coherency·analysis·of·fMRI·data</a></li>86 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/resting_state_fmri.html">Coherency·analysis·of·fMRI·data</a></li>
84 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/granger_fmri.html">Granger·‘causality’·of·fMRI·data</a></li> 
85 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/grasshopper.html">Auditory·processing·in·grasshoppers</a></li> 
86 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/filtering_fmri.html">Filtering·and·normalizing·fMRI·data</a></li> 
87 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/seed_analysis.html">Seed·correlation/coherence·with·fMRI·data</a></li> 
88 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_2vars.html">Multivariate·auto-regressive·modeling</a></li> 
89 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/mtm_harmonic_test.html">Multitaper·F-test·for·harmonic·components</a></li>87 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/mtm_harmonic_test.html">Multitaper·F-test·for·harmonic·components</a></li>
90 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_1var.html">Fitting·an·AR·model:·algorithm·module·interface</a></li> 
91 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/multi_taper_coh.html">Multitaper·coherence·estimation</a></li>88 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/multi_taper_coh.html">Multitaper·coherence·estimation</a></li>
 89 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/seed_analysis.html">Seed·correlation/coherence·with·fMRI·data</a></li>
92 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/multi_taper_spectral_estimation.html">Multitaper·spectral·estimation</a></li>90 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/multi_taper_spectral_estimation.html">Multitaper·spectral·estimation</a></li>
 91 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/filtering_fmri.html">Filtering·and·normalizing·fMRI·data</a></li>
 92 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_model_fit.html">Fitting·an·MAR·model:·analyzer·interface</a></li>
93 </ul>93 </ul>
94 </li>94 </li>
95 <li·class="toctree-l1"><a·class="reference·internal"·href="discussion/index.html">Discussion</a><ul>95 <li·class="toctree-l1"><a·class="reference·internal"·href="discussion/index.html">Discussion</a><ul>
96 <li·class="toctree-l2"><a·class="reference·internal"·href="discussion/note_about_discussion.html">A·note·about·the·discussion·section</a></li>96 <li·class="toctree-l2"><a·class="reference·internal"·href="discussion/note_about_discussion.html">A·note·about·the·discussion·section</a></li>
97 <li·class="toctree-l2"><a·class="reference·internal"·href="discussion/multitaper_jackknife.html">Jack-knifing·a·Multitaper·SDF·estimator</a></li>97 <li·class="toctree-l2"><a·class="reference·internal"·href="discussion/multitaper_jackknife.html">Jack-knifing·a·Multitaper·SDF·estimator</a></li>
98 </ul>98 </ul>
99 </li>99 </li>
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23 <div·style="background-color:·white;·text-align:·left;·padding:·10px·10px·15px·15px">23 <div·style="background-color:·white;·text-align:·left;·padding:·10px·10px·15px·15px">
24 ·<a·href="../index.html">24 ·<a·href="../index.html">
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32 ········<li·class="right"·style="margin-right:·10px">32 ········<li·class="right"·style="margin-right:·10px">
33 ··········<a·href="../genindex.html"·title="General·Index"33 ··········<a·href="../genindex.html"·title="General·Index"
34 ·············accesskey="I">index</a></li>34 ·············accesskey="I">index</a></li>
35 ········<li·class="right"·>35 ········<li·class="right"·>
36 ··········<a·href="../py-modindex.html"·title="Python·Module·Index"36 ··········<a·href="../py-modindex.html"·title="Python·Module·Index"
37 ·············>modules</a>·|</li>37 ·············>modules</a>·|</li>
38 ········<li·class="right"·>38 ········<li·class="right"·>
39 ··········<a·href="ar_model_fit.html"·title="Fitting·an·MAR·model:·analyzer·interface"39 ··········<a·href="granger_fmri.html"·title="Granger·‘causality’·of·fMRI·data"
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42 ··········<a·href="../whatsnew/version0.3.html"·title="Release·notes·for·nitime·version·0.3"42 ··········<a·href="../whatsnew/version0.3.html"·title="Release·notes·for·nitime·version·0.3"
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65 <p>If·you·want·to·replicate·a·particular·analysis·or·visualization,·simply·copy65 <p>If·you·want·to·replicate·a·particular·analysis·or·visualization,·simply·copy
66 the·relevant·“.py”·script·from·the·source·distribution,·or·download·the·script66 the·relevant·“.py”·script·from·the·source·distribution,·or·download·the·script
67 using·the·link·at·the·bottom·of·each·page.</p>67 using·the·link·at·the·bottom·of·each·page.</p>
68 <p>Thanks·to·the·developers·of·<a·class="reference·external"·href="http://www.pymvpa.org">PyMVPA</a>·for·designing·the·software·which·enables·us68 <p>Thanks·to·the·developers·of·<a·class="reference·external"·href="http://www.pymvpa.org">PyMVPA</a>·for·designing·the·software·which·enables·us
69 to·provide·these·documented·examples!</p>69 to·provide·these·documented·examples!</p>
70 <div·class="toctree-wrapper·compound">70 <div·class="toctree-wrapper·compound">
71 <ul>71 <ul>
72 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_model_fit.html">Fitting·an·MAR·model:·analyzer·interface</a></li>72 <li·class="toctree-l1"><a·class="reference·internal"·href="granger_fmri.html">Granger·‘causality’·of·fMRI·data</a><ul>
 73 <li·class="toctree-l2"><a·class="reference·internal"·href="granger_fmri.html#references">References</a></li>
 74 </ul>
 75 </li>
 76 <li·class="toctree-l1"><a·class="reference·internal"·href="snr_example.html">Calculation·of·signal-to-noise·and·information</a></li>
73 <li·class="toctree-l1"><a·class="reference·internal"·href="mtm_baseband_power.html">Multitaper·method·for·baseband·demodulation</a><ul>77 <li·class="toctree-l1"><a·class="reference·internal"·href="mtm_baseband_power.html">Multitaper·method·for·baseband·demodulation</a><ul>
74 <li·class="toctree-l2"><a·class="reference·internal"·href="mtm_baseband_power.html#test-1">Test·1</a></li>78 <li·class="toctree-l2"><a·class="reference·internal"·href="mtm_baseband_power.html#test-1">Test·1</a></li>
75 <li·class="toctree-l2"><a·class="reference·internal"·href="mtm_baseband_power.html#test-2">Test·2</a></li>79 <li·class="toctree-l2"><a·class="reference·internal"·href="mtm_baseband_power.html#test-2">Test·2</a></li>
76 </ul>80 </ul>
77 </li>81 </li>
 82 <li·class="toctree-l1"><a·class="reference·internal"·href="grasshopper.html">Auditory·processing·in·grasshoppers</a></li>
 83 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_2vars.html">Multivariate·auto-regressive·modeling</a></li>
 84 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_1var.html">Fitting·an·AR·model:·algorithm·module·interface</a></li>
78 <li·class="toctree-l1"><a·class="reference·internal"·href="event_related_fmri.html">Event-related·fMRI</a></li>85 <li·class="toctree-l1"><a·class="reference·internal"·href="event_related_fmri.html">Event-related·fMRI</a></li>
79 <li·class="toctree-l1"><a·class="reference·internal"·href="snr_example.html">Calculation·of·signal-to-noise·and·information</a></li> 
80 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_3vars.html">Multivariate·auto-regressive·modeling·-·3·variables</a></li>86 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_3vars.html">Multivariate·auto-regressive·modeling·-·3·variables</a></li>
81 <li·class="toctree-l1"><a·class="reference·internal"·href="resting_state_fmri.html">Coherency·analysis·of·fMRI·data</a></li>87 <li·class="toctree-l1"><a·class="reference·internal"·href="resting_state_fmri.html">Coherency·analysis·of·fMRI·data</a></li>
82 <li·class="toctree-l1"><a·class="reference·internal"·href="granger_fmri.html">Granger·‘causality’·of·fMRI·data</a><ul> 
83 <li·class="toctree-l2"><a·class="reference·internal"·href="granger_fmri.html#references">References</a></li> 
84 </ul> 
85 </li> 
86 <li·class="toctree-l1"><a·class="reference·internal"·href="grasshopper.html">Auditory·processing·in·grasshoppers</a></li> 
87 <li·class="toctree-l1"><a·class="reference·internal"·href="filtering_fmri.html">Filtering·and·normalizing·fMRI·data</a></li> 
88 <li·class="toctree-l1"><a·class="reference·internal"·href="seed_analysis.html">Seed·correlation/coherence·with·fMRI·data</a></li> 
89 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_2vars.html">Multivariate·auto-regressive·modeling</a></li> 
90 <li·class="toctree-l1"><a·class="reference·internal"·href="mtm_harmonic_test.html">Multitaper·F-test·for·harmonic·components</a></li>88 <li·class="toctree-l1"><a·class="reference·internal"·href="mtm_harmonic_test.html">Multitaper·F-test·for·harmonic·components</a></li>
91 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_1var.html">Fitting·an·AR·model:·algorithm·module·interface</a></li> 
92 <li·class="toctree-l1"><a·class="reference·internal"·href="multi_taper_coh.html">Multitaper·coherence·estimation</a></li>89 <li·class="toctree-l1"><a·class="reference·internal"·href="multi_taper_coh.html">Multitaper·coherence·estimation</a></li>
 90 <li·class="toctree-l1"><a·class="reference·internal"·href="seed_analysis.html">Seed·correlation/coherence·with·fMRI·data</a></li>
93 <li·class="toctree-l1"><a·class="reference·internal"·href="multi_taper_spectral_estimation.html">Multitaper·spectral·estimation</a></li>91 <li·class="toctree-l1"><a·class="reference·internal"·href="multi_taper_spectral_estimation.html">Multitaper·spectral·estimation</a></li>
 92 <li·class="toctree-l1"><a·class="reference·internal"·href="filtering_fmri.html">Filtering·and·normalizing·fMRI·data</a></li>
 93 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_model_fit.html">Fitting·an·MAR·model:·analyzer·interface</a></li>
94 </ul>94 </ul>
95 </div>95 </div>
96 </section>96 </section>
  
  
97 ············<div·class="clearer"></div>97 ············<div·class="clearer"></div>
98 ··········</div>98 ··········</div>
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127 ··<div>127 ··<div>
128 ····<h4>Previous·topic</h4>128 ····<h4>Previous·topic</h4>
129 ····<p·class="topless"><a·href="../whatsnew/version0.3.html"129 ····<p·class="topless"><a·href="../whatsnew/version0.3.html"
130 ··························title="previous·chapter">Release·notes·for·nitime·version·0.3</a></p>130 ··························title="previous·chapter">Release·notes·for·nitime·version·0.3</a></p>
131 ··</div>131 ··</div>
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134 ····<p·class="topless"><a·href="ar_model_fit.html"134 ····<p·class="topless"><a·href="granger_fmri.html"
135 ··························title="next·chapter">Fitting·an·MAR·model:·analyzer·interface</a></p>135 ··························title="next·chapter">Granger·‘causality’·of·fMRI·data</a></p>
136 ··</div>136 ··</div>
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155 ··········<a·href="../genindex.html"·title="General·Index"155 ··········<a·href="../genindex.html"·title="General·Index"
156 ·············>index</a></li>156 ·············>index</a></li>
157 ········<li·class="right"·>157 ········<li·class="right"·>
158 ··········<a·href="../py-modindex.html"·title="Python·Module·Index"158 ··········<a·href="../py-modindex.html"·title="Python·Module·Index"
159 ·············>modules</a>·|</li>159 ·············>modules</a>·|</li>
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18 If·you·want·to·replicate·a·particular·analysis·or·visualization,·simply·copy18 If·you·want·to·replicate·a·particular·analysis·or·visualization,·simply·copy
19 the·relevant·“.py”·script·from·the·source·distribution,·or·download·the·script19 the·relevant·“.py”·script·from·the·source·distribution,·or·download·the·script
20 using·the·link·at·the·bottom·of·each·page.20 using·the·link·at·the·bottom·of·each·page.
21 Thanks·to·the·developers·of·_\x8P_\x8y_\x8M_\x8V_\x8P_\x8A·for·designing·the·software·which·enables·us21 Thanks·to·the·developers·of·_\x8P_\x8y_\x8M_\x8V_\x8P_\x8A·for·designing·the·software·which·enables·us
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110 ····*·_\x8N_\x8I_\x8P_\x8Y_\x8·_\x8P_\x8r_\x8o_\x8j_\x8e_\x8c_\x8t_\x8s110 ····*·_\x8N_\x8I_\x8P_\x8Y_\x8·_\x8P_\x8r_\x8o_\x8j_\x8e_\x8c_\x8t_\x8s
111 ····*·_\x8M_\x8a_\x8i_\x8l_\x8i_\x8n_\x8g_\x8·_\x8L_\x8i_\x8s_\x8t111 ····*·_\x8M_\x8a_\x8i_\x8l_\x8i_\x8n_\x8g_\x8·_\x8L_\x8i_\x8s_\x8t
112 ····*·_\x8L_\x8i_\x8c_\x8e_\x8n_\x8s_\x8e112 ····*·_\x8L_\x8i_\x8c_\x8e_\x8n_\x8s_\x8e
113 *\x8**\x8**\x8*·P\x8Pr\x8re\x8ev\x8vi\x8io\x8ou\x8us\x8s·t\x8to\x8op\x8pi\x8ic\x8c·*\x8**\x8**\x8*113 *\x8**\x8**\x8*·P\x8Pr\x8re\x8ev\x8vi\x8io\x8ou\x8us\x8s·t\x8to\x8op\x8pi\x8ic\x8c·*\x8**\x8**\x8*
114 _\x8E_.v_.e_.n_.t_.-_.r_.e_.l_.a_.t_.e_.d_.·_.f_.M_.R_.I114 _\x8G_.r_.a_.n_.g_.e_.r_.·_.‘_.c_.a_.u_.s_.a_.l_.i_.t_.y_.’_.·_.o_.f_.·_.f_.M_.R_.I_.·_.d_.a_.t_.a
115 *\x8**\x8**\x8*·N\x8Ne\x8ex\x8xt\x8t·t\x8to\x8op\x8pi\x8ic\x8c·*\x8**\x8**\x8*115 *\x8**\x8**\x8*·N\x8Ne\x8ex\x8xt\x8t·t\x8to\x8op\x8pi\x8ic\x8c·*\x8**\x8**\x8*
116 _\x8M_\x8u_\x8l_\x8t_\x8i_\x8v_.a_.r_.i_.a_.t_.e_.·_.a_.u_.t_.o_.-_.r_.e_.g_.r_.e_.s_.s_.i_.v_.e_.·_.m_.o_.d_.e_.l_.i_.n_.g_.·_.-_.·_.3_.·_.v_.a_.r_.i_.a_.b_.l_.e_.s116 _\x8M_\x8u_\x8l_\x8t_\x8i_\x8t_.a_.p_.e_.r_.·_.m_.e_.t_.h_.o_.d_.·_.f_.o_.r_.·_.b_.a_.s_.e_.b_.a_.n_.d_.·_.d_.e_.m_.o_.d_.u_.l_.a_.t_.i_.o_.n
117 *\x8**\x8**\x8**\x8*·Q\x8Qu\x8ui\x8ic\x8ck\x8k·s\x8se\x8ea\x8ar\x8rc\x8ch\x8h·*\x8**\x8**\x8**\x8*117 *\x8**\x8**\x8**\x8*·Q\x8Qu\x8ui\x8ic\x8ck\x8k·s\x8se\x8ea\x8ar\x8rc\x8ch\x8h·*\x8**\x8**\x8**\x8*
118 [q···················][Go]118 [q···················][Go]
119 *\x8**\x8**\x8**\x8*·N\x8Na\x8av\x8vi\x8ig\x8ga\x8at\x8ti\x8io\x8on\x8n·*\x8**\x8**\x8**\x8*119 *\x8**\x8**\x8**\x8*·N\x8Na\x8av\x8vi\x8ig\x8ga\x8at\x8ti\x8io\x8on\x8n·*\x8**\x8**\x8**\x8*
120 ····*·_\x8i_\x8n_\x8d_\x8e_\x8x120 ····*·_\x8i_\x8n_\x8d_\x8e_\x8x
121 ····*·_\x8m_\x8o_\x8d_\x8u_\x8l_\x8e_\x8s·|121 ····*·_\x8m_\x8o_\x8d_\x8u_\x8l_\x8e_\x8s·|
122 ····*·_\x8n_\x8e_\x8x_\x8t·|122 ····*·_\x8n_\x8e_\x8x_\x8t·|
123 ····*·_\x8p_\x8r_\x8e_\x8v_\x8i_\x8o_\x8u_\x8s·|123 ····*·_\x8p_\x8r_\x8e_\x8v_\x8i_\x8o_\x8u_\x8s·|