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1	·a27c2964bb766a86695b18c2425b1356·15697152·debug·optional·libyade-dbgsym_2024.08a-4_amd64.deb	1	·a27c2964bb766a86695b18c2425b1356·15697152·debug·optional·libyade-dbgsym_2024.08a-4_amd64.deb
2	·f0fe6e6884ab343ca7057b2009650287·68054288·science·optional·libyade_2024.08a-4_amd64.deb	2	·f0fe6e6884ab343ca7057b2009650287·68054288·science·optional·libyade_2024.08a-4_amd64.deb
3	·b2dcaf2b0d50d8b12cf530da7eeff49d·302072·python·optional·python3-yade_2024.08a-4_amd64.deb	3	·b2dcaf2b0d50d8b12cf530da7eeff49d·302072·python·optional·python3-yade_2024.08a-4_amd64.deb
4	·0eff6b5c2~~9d59~~c~~971e9ef~~f~~c1c~~20f~~12b5~~·187~~47108~~·doc·optional·yade-doc_2024.08a-4_all.deb	4	·d42b3f03b8b72b7dac84b7d43f3095d2·18754552·doc·optional·yade-doc_2024.08a-4_all.deb
5	·6b8943b557d6e37a93e1049976626d11·2421228·science·optional·yade_2024.08a-4_amd64.deb	5	·6b8943b557d6e37a93e1049976626d11·2421228·science·optional·yade_2024.08a-4_amd64.deb


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1	-rw-r--r--···0········0········0········4·2024-09-02·04:06:43.000000·debian-binary	1	-rw-r--r--···0········0········0········4·2024-09-02·04:06:43.000000·debian-binary
2	-rw-r--r--···0········0········0·····9020·2024-09-02·04:06:43.000000·control.tar.xz	2	-rw-r--r--···0········0········0·····9024·2024-09-02·04:06:43.000000·control.tar.xz
3	-rw-r--r--···0········0········0·187~~3789~~6·2024-09-02·04:06:43.000000·data.tar.xz	3	-rw-r--r--···0········0········0·18745336·2024-09-02·04:06:43.000000·data.tar.xz


Offset 1, 13 lines modified		Offset 1, 13 lines modified
1	Package:·yade-doc	1	Package:·yade-doc
2	Source:·yade	2	Source:·yade
3	Version:·2024.08a-4	3	Version:·2024.08a-4
4	Architecture:·all	4	Architecture:·all
5	Maintainer:·Debian·Science·Maintainers·<debian-science-maintainers@lists.alioth.debian.org>	5	Maintainer:·Debian·Science·Maintainers·<debian-science-maintainers@lists.alioth.debian.org>
6	Installed-Size:·42111	6	Installed-Size:·42121
7	Depends:·libjs-jquery·(>=·3.6.0),·libjs-sphinxdoc·(>=·7.4),·libjs-mathjax	7	Depends:·libjs-jquery·(>=·3.6.0),·libjs-sphinxdoc·(>=·7.4),·libjs-mathjax
8	Recommends:·yade	8	Recommends:·yade
9	Section:·doc	9	Section:·doc
10	Priority:·optional	10	Priority:·optional
11	Multi-Arch:·foreign	11	Multi-Arch:·foreign
12	Homepage:·https://yade-dem.org/doc/	12	Homepage:·https://yade-dem.org/doc/
13	Description:·Platform·for·discrete·element·modeling.·Documentation	13	Description:·Platform·for·discrete·element·modeling.·Documentation


Offset 1, 10 lines modified		Offset 1, 10 lines modified
1	Yade·Documentation·(3rd·ed.)	1	Yade·Documentation·(3rd·ed.)

2	3rd·Edition·based·on·Yade·version·2024.08a,·~~Dec~~ember·16,·2025	2	3rd·Edition·based·on·Yade·version·2024.08a,·November·14,·2024

3	\xcAuthors	3	\xcAuthors
4	•·Václav·Šmilauer·Freelance·consultant·(http://woodem.eu)	4	•·Václav·Šmilauer·Freelance·consultant·(http://woodem.eu)
5	•·Vasileios·Angelidakis·Newcastle·University,·UK	5	•·Vasileios·Angelidakis·Newcastle·University,·UK
6	•·Emanuele·Catalano·Univ.·Grenoble·Alpes,·3SR·lab.	6	•·Emanuele·Catalano·Univ.·Grenoble·Alpes,·3SR·lab.
7	•·Robert·Caulk·Univ.·Grenoble·Alpes,·3SR·lab.	7	•·Robert·Caulk·Univ.·Grenoble·Alpes,·3SR·lab.
8	•·Bruno·Chareyre·Univ.·Grenoble·Alpes,·3SR·lab.	8	•·Bruno·Chareyre·Univ.·Grenoble·Alpes,·3SR·lab.
Offset 259, 15 lines modified		Offset 259, 15 lines modified

259	6·Short-courses	259	6·Short-courses
260	1227	260	1227
261	6.1·THM·short-course·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1227	261	6.1·THM·short-course·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1227
262	6.1.1·Installing·Yade·(for·Windows·and·Mac·users)·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1227	262	6.1.1·Installing·Yade·(for·Windows·and·Mac·users)·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1227
263	6.1.2·Introduction·to·Bash·and·Python·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1228	263	6.1.2·Introduction·to·Bash·and·Python·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1228
264	6.1.3·Day·1·-·Yade·Hands-on·part·1·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1234	264	6.1.3·Day·1·-·Yade·Hands-on·part·1·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1234
265	6.1.4·Day·1·-·Yade·Hands-on·part·2·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1235	265	6.1.4·Day·1·-·Yade·Hands-on·part·2·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1236
266	6.1.5·Day·2·-·Fluids·Hands-on·part·1·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1238	266	6.1.5·Day·2·-·Fluids·Hands-on·part·1·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1238
267	6.1.6·Day·3·-·Thermal·Hands-on·part·1·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1242	267	6.1.6·Day·3·-·Thermal·Hands-on·part·1·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1242
268	6.1.7·Day·3·-·Thermal·Hands-on·part·2·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1246	268	6.1.7·Day·3·-·Thermal·Hands-on·part·2·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1246
269	7·Literature	269	7·Literature
270	1249	270	1249
271	7.1·Yade·Technical·Archive·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1249	271	7.1·Yade·Technical·Archive·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1249
272	7.1.1·About·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1249	272	7.1.1·About·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·.·1249
Offset 522, 18 lines modified		Offset 522, 18 lines modified

522	Chapter·1.·Guided·tour	522	Chapter·1.·Guided·tour

523	\xcYade·Documentation,·Release·3rd·ed.	523	\xcYade·Documentation,·Release·3rd·ed.

524	(continued·from·previous·page)	524	(continued·from·previous·page)

525	Out[14]:·1526	525	Out[14]:·2528
526	Yade·[15]:·O.run(100000,True)	526	Yade·[15]:·O.run(100000,True)
527	Yade·[16]:·O.iter	527	Yade·[16]:·O.iter
528	Out[16]:·101526	528	Out[16]:·102528
529	Yade·[17]:·O.stopAtIter=500000	529	Yade·[17]:·O.stopAtIter=500000
530	Yade·[18]:·O.run()	530	Yade·[18]:·O.run()
531	Yade·[19]:·O.wait()	531	Yade·[19]:·O.wait()
532	Yade·[20]:·O.iter	532	Yade·[20]:·O.iter
533	Out[20]:·500000	533	Out[20]:·500000

534	Saving·and·loading	534	Saving·and·loading
Offset 602, 15 lines modified		Offset 602, 15 lines modified
602	To·assure·flexibility·of·software·design,·yade·makes·clear·distinction·of·2·families·of·classes:·data·components·and·functional·components.·The·former·only·store·data·without·providing·functionality,·while	602	To·assure·flexibility·of·software·design,·yade·makes·clear·distinction·of·2·families·of·classes:·data·components·and·functional·components.·The·former·only·store·data·without·providing·functionality,·while
603	the·latter·define·functions·operating·on·the·data.·In·programming,·this·is·known·as·visitor·pattern·(as	603	the·latter·define·functions·operating·on·the·data.·In·programming,·this·is·known·as·visitor·pattern·(as
604	functional·components·“visit”·the·data,·without·being·bound·to·them·explicitly).	604	functional·components·“visit”·the·data,·without·being·bound·to·them·explicitly).
605	Entire·simulation,·i.e.·both·data·and·functions,·are·stored·in·a·single·Scene·object.·It·is·accessible	605	Entire·simulation,·i.e.·both·data·and·functions,·are·stored·in·a·single·Scene·object.·It·is·accessible
606	through·the·Omega·class·in·python·(a·singleton),·which·is·by·default·stored·in·the·O·global·variable:	606	through·the·Omega·class·in·python·(a·singleton),·which·is·by·default·stored·in·the·O·global·variable:
607	Yade·[28]:·O.bodies	607	Yade·[28]:·O.bodies
608	#·some·data·components	608	#·some·data·components
609	Out[28]:·<yade.wrapper.BodyContainer·at·0x7f38~~42c~~5d000>	609	Out[28]:·<yade.wrapper.BodyContainer·at·0x7f478a385000>
610	Yade·[29]:·len(O.bodies)	610	Yade·[29]:·len(O.bodies)
611	Out[29]:·0	611	Out[29]:·0

612	#·there·are·no·bodies·as·of·yet	612	#·there·are·no·bodies·as·of·yet

613	Yade·[30]:·O.engines	613	Yade·[30]:·O.engines
614	Out[30]:·[]	614	Out[30]:·[]
Offset 660, 17 lines modified		Offset 660, 17 lines modified
660	and·are·essential·to·understand·Yade’s·functioning;·they·are·discussed·below.	660	and·are·essential·to·understand·Yade’s·functioning;·they·are·discussed·below.
661	Explicitly·assigning·all·4·properties·to·each·particle·by·hand·would·be·not·practical;·there·are·utility	661	Explicitly·assigning·all·4·properties·to·each·particle·by·hand·would·be·not·practical;·there·are·utility
662	functions·defined·to·create·them·with·all·necessary·ingredients.·For·example,·we·can·create·sphere	662	functions·defined·to·create·them·with·all·necessary·ingredients.·For·example,·we·can·create·sphere
663	particle·using·utils.sphere:	663	particle·using·utils.sphere:
664	Yade·[31]:·s=utils.sphere(center=[0,0,0],radius=1)	664	Yade·[31]:·s=utils.sphere(center=[0,0,0],radius=1)
665	Yade·[32]:·s.shape,·s.state,·s.mat,·s.bound	665	Yade·[32]:·s.shape,·s.state,·s.mat,·s.bound
666	Out[32]:	666	Out[32]:
667	(<Sphere·instance·at·0x7f~~1425~~0>,	667	(<Sphere·instance·at·0x39fdc1d0>,
668	<State·instance·at·0x7e~~b133~~0>,	668	<State·instance·at·0x39e492a0>,
669	<FrictMat·instance·at·0x~~7f13~~c70>,	669	<FrictMat·instance·at·0x39ee6cf0>,
670	None)	670	None)
671	Yade·[33]:·s.state.pos	671	Yade·[33]:·s.state.pos
672	Out[33]:·Vector3(0,0,0)	672	Out[33]:·Vector3(0,0,0)
673	Yade·[34]:·s.shape.radius	673	Yade·[34]:·s.shape.radius
674	Out[34]:·1.0	674	Out[34]:·1.0
675	We·see·that·a·sphere·with·material·of·type·FrictMat·(default,·unless·you·provide·another·Material)·and	675	We·see·that·a·sphere·with·material·of·type·FrictMat·(default,·unless·you·provide·another·Material)·and
676	bounding·volume·of·type·Aabb·(axis-aligned·bounding·box)·was·created.·Its·position·is·at·the·origin·and	676	bounding·volume·of·type·Aabb·(axis-aligned·bounding·box)·was·created.·Its·position·is·at·the·origin·and
Offset 752, 25 lines modified		Offset 752, 25 lines modified
752	10	752	10

753	Chapter·1.·Guided·tour	753	Chapter·1.·Guided·tour

754	\xcYade·Documentation,·Release·3rd·ed.	754	\xcYade·Documentation,·Release·3rd·ed.

755	Yade·[41]:·O.interactions[0,1]	755	Yade·[41]:·O.interactions[0,1]
756	Out[41]:·<Interaction·instance·at·0x7e~~a691~~0>	756	Out[41]:·<Interaction·instance·at·0x39eb1c90>
757	Yade·[42]:·O.interactions[1,0]	757	Yade·[42]:·O.interactions[1,0]
758	#·order·of·ids·is·not·important	758	#·order·of·ids·is·not·important
759	Out[42]:·<Interaction·instance·at·0x7e~~a691~~0>	759	Out[42]:·<Interaction·instance·at·0x39eb1c90>
760	Yade·[43]:·i=O.interactions[0,1]	760	Yade·[43]:·i=O.interactions[0,1]
761	Yade·[44]:·i.id1,i.id2	761	Yade·[44]:·i.id1,i.id2
762	Out[44]:·(0,·1)	762	Out[44]:·(0,·1)
763	Yade·[45]:·i.geom	763	Yade·[45]:·i.geom
764	Out[45]:·<ScGeom·instance·at·0x7e~~cd36~~0>	764	Out[45]:·<ScGeom·instance·at·0x39ee6710>
765	Yade·[46]:·i.phys	765	Yade·[46]:·i.phys
766	Out[46]:·<FrictPhys·instance·at·0x~~7df429~~0>	766	Out[46]:·<FrictPhys·instance·at·0x39ee6c80>
767	Yade·[47]:·O.interactions[100,10111]	767	Yade·[47]:·O.interactions[100,10111]
768	#·asking·for·non·existing·interaction·throws␣	768	#·asking·for·non·existing·interaction·throws␣
769	,→exception	769	,→exception
770	[0;31m---------------------------------------------------------------------------[0m	770	[0;31m---------------------------------------------------------------------------[0m
771	[0;31mIndexError[0m	771	[0;31mIndexError[0m
772	Traceback·(most·recent·call·last)	772	Traceback·(most·recent·call·last)
773	Cell·[0;32mIn[47],·line·1[0m	773	Cell·[0;32mIn[47],·line·1[0m
Offset 1417, 19 lines modified		Offset 1417, 17 lines modified
1417	them,·they·are·utils.sphere,·utils.facet,·utils.wall.	1417	them,·they·are·utils.sphere,·utils.facet,·utils.wall.
1418	Yade·[43]:·s=utils.sphere((0,0,0),radius=1)	1418	Yade·[43]:·s=utils.sphere((0,0,0),radius=1)
1419	,→(0,0,0)·with·radius=1	1419	,→(0,0,0)·with·radius=1

1420	#·create·sphere·particle·centered·at␣	1420	#·create·sphere·particle·centered·at␣

1421	Yade·[44]:·s.shape	1421	Yade·[44]:·s.shape
1422	,→particle
1423	Out[44]:·<Sphere·instance·at·0x7ea4820>

1424	#·s.shape·describes·the·geometry·of·the␣	1422	#·s.shape·describes·the·geometry·of·the␣
		1423	,→particle
		1424	Out[44]:·<Sphere·instance·at·0x39f43dc0>
1425	Yade·[45]:·s.shape.radius	1425	Yade·[45]:·s.shape.radius
1426	Out[45]:·1.0	1426	Out[45]:·1.0

1427	#·we·already·know·the·Sphere·class	1427	#·we·already·know·the·Sphere·class

1428	Yade·[46]:·s.state.mass,·s.state.inertia·#·inertia·is·computed·from·density·and␣	1428	Yade·[46]:·s.state.mass,·s.state.inertia·#·inertia·is·computed·from·density·and␣
1429	(continues·on·next·page)	1429	(continues·on·next·page)
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30	usr/share/doc/yade/html/_images/connect.png	30	usr/share/doc/yade/html/_images/connect.png
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33	usr/share/doc/yade/html/_images/gnuplot.png	33	usr/share/doc/yade/html/_images/gnuplot.png
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84	usr/share/doc/yade/html/_images/horse.png	84	usr/share/doc/yade/html/_images/horse.png
85	usr/share/doc/yade/html/_images/hyperboloid.png	85	usr/share/doc/yade/html/_images/hyperboloid.png
86	usr/share/doc/yade/html/_images/instancetype.png	86	usr/share/doc/yade/html/_images/instancetype.png
87	usr/share/doc/yade/html/_images/interaction-classes.png	87	usr/share/doc/yade/html/_images/interaction-classes.png
88	usr/share/doc/yade/html/_images/launchinstance.png	88	usr/share/doc/yade/html/_images/launchinstance.png
89	usr/share/doc/yade/html/_images/law-functors.png	89	usr/share/doc/yade/html/_images/law-functors.png
90	usr/share/doc/yade/html/_images/localstrain.png	90	usr/share/doc/yade/html/_images/localstrain.png


Offset 34, 54 lines modified		Offset 34, 54 lines modified
34	..·graphviz::	34	..·graphviz::
35	» :caption:·Inheritance·graph·of·Shape.	35	» :caption:·Inheritance·graph·of·Shape.

36	» digraph·Shape·{	36	» digraph·Shape·{
37	» » rankdir=RL;	37	» » rankdir=RL;
38	» » margin="0.2,0.05";	38	» » margin="0.2,0.05";
39	» » "Shape"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Shape"];	39	» » "Shape"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Shape"];
40	» » "Subdomain"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Subdomain"];
41	» » "Subdomain"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
42	» » "LevelSet"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.LevelSet"];
43	» » "LevelSet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
44	» » "PFacet"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PFacet"];
45	» » "PFacet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
46	» » "Tetra"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Tetra"];	40	» » "Lin4NodeTetra"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra"];
47	» » "Tetra"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	41	» » "Lin4NodeTetra"·->·"DeformableElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
48	» » "GridNode"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridNode"];
49	» » "GridNode"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
50	» » "Facet"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Facet"];
51	» » "Facet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
52	» » "Box"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Box"];
53	» » "Box"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
54	» » "DeformableElement"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableElement"];	42	» » "DeformableElement"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableElement"];
55	» » "DeformableElement"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	43	» » "DeformableElement"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
56	» » "Node"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Node"];
57	» » "Node"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
58	» » "ChainedCylinder"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ChainedCylinder"];	44	» » "ChainedCylinder"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ChainedCylinder"];
59	» » "ChainedCylinder"·->·"Cylinder"·[arrowsize=0.5,style="setlinewidth(0.5)"];	45	» » "ChainedCylinder"·->·"Cylinder"·[arrowsize=0.5,style="setlinewidth(0.5)"];
60	» » "~~Clu~~mp"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.~~Clu~~mp"];	46	» » "Subdomain"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Subdomain"];
61	» » "~~Clu~~mp"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	47	» » "Subdomain"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
62	» » "DeformableCohesiveElement"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableCohesiveElement"];
63	» » "DeformableCohesiveElement"·->·"DeformableElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
64	» » "Lin4NodeTetra_Lin4NodeTetra_InteractionElement"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra_Lin4NodeTetra_InteractionElement"];
65	» » "Lin4NodeTetra_Lin4NodeTetra_InteractionElement"·->·"DeformableCohesiveElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
66	» » "Sphere"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Sphere"];	48	» » "Sphere"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Sphere"];
67	» » "Sphere"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	49	» » "Sphere"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
68	» » "Cylinder"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Cylinder"];
69	» » "Cylinder"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
70	» » "FluidDomainBbox"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.FluidDomainBbox"];	50	» » "FluidDomainBbox"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.FluidDomainBbox"];
71	» » "FluidDomainBbox"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	51	» » "FluidDomainBbox"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		52	» » "Node"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Node"];
		53	» » "Node"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
72	» » "GridConne~~ction~~"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridConne~~ction~~"];	54	» » "GridNode"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridNode"];
73	» » "GridConne~~ction~~"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];	55	» » "GridNode"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		56	» » "LevelSet"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.LevelSet"];
		57	» » "LevelSet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		58	» » "Facet"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Facet"];
		59	» » "Facet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
74	» » "Wall"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Wall"];	60	» » "Wall"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Wall"];
75	» » "Wall"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	61	» » "Wall"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
76	» » "Lin4NodeTetra"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra"];
77	» » "Lin4NodeTetra"·->·"DeformableElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
78	» » "PotentialParticle"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PotentialParticle"];	62	» » "PotentialParticle"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PotentialParticle"];
79	» » "PotentialParticle"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	63	» » "PotentialParticle"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		64	» » "Tetra"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Tetra"];
		65	» » "Tetra"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		66	» » "Cylinder"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Cylinder"];
		67	» » "Cylinder"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		68	» » "Clump"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Clump"];
		69	» » "Clump"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		70	» » "Box"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Box"];
		71	» » "Box"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		72	» » "DeformableCohesiveElement"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableCohesiveElement"];
		73	» » "DeformableCohesiveElement"·->·"DeformableElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		74	» » "GridConnection"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridConnection"];
		75	» » "GridConnection"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		76	» » "Lin4NodeTetra_Lin4NodeTetra_InteractionElement"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra_Lin4NodeTetra_InteractionElement"];
		77	» » "Lin4NodeTetra_Lin4NodeTetra_InteractionElement"·->·"DeformableCohesiveElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		78	» » "PFacet"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PFacet"];
		79	» » "PFacet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
80	» }	80	» }

81	..·autoclass::·Shape	81	..·autoclass::·Shape
82	» :members:	82	» :members:
83	» :undoc-members:	83	» :undoc-members:
84	» :inherited-members:	84	» :inherited-members:

Offset 195, 22 lines modified		Offset 195, 22 lines modified
195	..·graphviz::	195	..·graphviz::
196	» :caption:·Inheritance·graph·of·State.	196	» :caption:·Inheritance·graph·of·State.

197	» digraph·State·{	197	» digraph·State·{
198	» » rankdir=RL;	198	» » rankdir=RL;
199	» » margin="0.2,0.05";	199	» » margin="0.2,0.05";
200	» » "State"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.State"];	200	» » "State"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.State"];
		201	» » "ChainedState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ChainedState"];
		202	» » "ChainedState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		203	» » "JCFpmState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.JCFpmState"];
		204	» » "JCFpmState"·->·"ThermalState"·[arrowsize=0.5,style="setlinewidth(0.5)"];
201	» » "WireState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.WireState"];	205	» » "WireState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.WireState"];
202	» » "WireState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];	206	» » "WireState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];
203	» » "CpmState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.CpmState"];	207	» » "CpmState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.CpmState"];
204	» » "CpmState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];	208	» » "CpmState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];
205	» » "JCFpmState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.JCFpmState"];
206	» » "JCFpmState"·->·"ThermalState"·[arrowsize=0.5,style="setlinewidth(0.5)"];
207	» » "ChainedState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ChainedState"];
208	» » "ChainedState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];
209	» » "ThermalState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ThermalState"];	209	» » "ThermalState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ThermalState"];
210	» » "ThermalState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];	210	» » "ThermalState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];
211	» }	211	» }

212	..·autoclass::·State	212	..·autoclass::·State
213	» :members:	213	» :members:
214	» :undoc-members:	214	» :undoc-members:
Offset 251, 54 lines modified		Offset 251, 54 lines modified
251	..·graphviz::	251	..·graphviz::
252	» :caption:·Inheritance·graph·of·Material.	252	» :caption:·Inheritance·graph·of·Material.

253	» digraph·Material·{	253	» digraph·Material·{
254	» » rankdir=RL;	254	» » rankdir=RL;
255	» » margin="0.2,0.05";	255	» » margin="0.2,0.05";
256	» » "Material"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Material"];	256	» » "Material"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Material"];
257	» » "LinIsoRayleighDampElastMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.LinIsoRayleighDampElastMat"];
258	» » "LinIsoRayleighDampElastMat"·->·"LinIsoElastMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
259	» » "JCFpmMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.JCFpmMat"];
260	» » "JCFpmMat"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
261	» » "LudingMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.LudingMat"];
262	» » "LudingMat"·->·"Material"·[arrowsize=0.5,style="setlinewidth(0.5)"];
263	» » "InelastCohFrictMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.InelastCohFrictMat"];
264	» » "InelastCohFrictMat"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
265	» » "DeformableElementMaterial"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableElementMaterial"];	257	» » "DeformableElementMaterial"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableElementMaterial"];
266	» » "DeformableElementMaterial"·->·"Material"·[arrowsize=0.5,style="setlinewidth(0.5)"];	258	» » "DeformableElementMaterial"·->·"Material"·[arrowsize=0.5,style="setlinewidth(0.5)"];
267	» » "FrictMatCDM"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.FrictMatCDM"];	259	» » "FrictMatCDM"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.FrictMatCDM"];
268	» » "FrictMatCDM"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];	260	» » "FrictMatCDM"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		261	» » "JCFpmMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.JCFpmMat"];
		262	» » "JCFpmMat"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		263	» » "FrictMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.FrictMat"];
		264	» » "FrictMat"·->·"ElastMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
Max diff block lines reached; 120228/133258 bytes (90.22%) of diff not shown.


Offset 242, 20 lines modified		Offset 242, 20 lines modified
242	(1000,True)·will·run·and·wait.·To·stop·at·absolute·step·number,·O.stopAtIter	242	(1000,True)·will·run·and·wait.·To·stop·at·absolute·step·number,·O.stopAtIter
243	can·be·set·and·O.run()·called·normally.	243	can·be·set·and·O.run()·called·normally.
244	Yade·[12]:·O.run()	244	Yade·[12]:·O.run()

245	Yade·[13]:·O.pause()	245	Yade·[13]:·O.pause()

246	Yade·[14]:·O.iter	246	Yade·[14]:·O.iter
247	Out[14]:·~~1918~~	247	Out[14]:·3479

248	Yade·[15]:·O.run(100000,True)	248	Yade·[15]:·O.run(100000,True)

249	Yade·[16]:·O.iter	249	Yade·[16]:·O.iter
250	Out[16]:·10~~1918~~	250	Out[16]:·103479

251	Yade·[17]:·O.stopAtIter=500000	251	Yade·[17]:·O.stopAtIter=500000

252	Yade·[18]:·O.run()	252	Yade·[18]:·O.run()

253	Yade·[19]:·O.wait()	253	Yade·[19]:·O.wait()

Offset 334, 15 lines modified		Offset 334, 15 lines modified
334	operating·on·the·data.·In·programming,·this·is·known·as·v\x8vi\x8is\x8si\x8it\x8to\x8or\x8r·pattern·(as	334	operating·on·the·data.·In·programming,·this·is·known·as·v\x8vi\x8is\x8si\x8it\x8to\x8or\x8r·pattern·(as
335	functional·components·“visit”·the·data,·without·being·bound·to·them	335	functional·components·“visit”·the·data,·without·being·bound·to·them
336	explicitly).	336	explicitly).
337	Entire·simulation,·i.e.·both·data·and·functions,·are·stored·in·a·single·Scene	337	Entire·simulation,·i.e.·both·data·and·functions,·are·stored·in·a·single·Scene
338	object.·It·is·accessible·through·the·_\x8O_\x8m_\x8e_\x8g_\x8a·class·in·python·(a·singleton),·which	338	object.·It·is·accessible·through·the·_\x8O_\x8m_\x8e_\x8g_\x8a·class·in·python·(a·singleton),·which
339	is·by·default·stored·in·the·O·global·variable:	339	is·by·default·stored·in·the·O·global·variable:
340	Yade·[28]:·O.bodies·······#·some·data·components	340	Yade·[28]:·O.bodies·······#·some·data·components
341	Out[28]:·<yade.wrapper.BodyContainer·at·0x7fa5fc6cc2e0>	341	Out[28]:·<yade.wrapper.BodyContainer·at·0x7f5d66f042e0>

342	Yade·[29]:·len(O.bodies)··#·there·are·no·bodies·as·of·yet	342	Yade·[29]:·len(O.bodies)··#·there·are·no·bodies·as·of·yet
343	Out[29]:·0	343	Out[29]:·0

344	Yade·[30]:·O.engines······#·functional·components,·empty·at·the·moment	344	Yade·[30]:·O.engines······#·functional·components,·empty·at·the·moment
345	Out[30]:·[]	345	Out[30]:·[]
346	\x8\x8\x8·D\x8Da\x8at\x8ta\x8a·c\x8co\x8om\x8mp\x8po\x8on\x8ne\x8en\x8nt\x8ts\x8s_\x8?\x8¶·\x8\x8\x8	346	\x8\x8\x8·D\x8Da\x8at\x8ta\x8a·c\x8co\x8om\x8mp\x8po\x8on\x8ne\x8en\x8nt\x8ts\x8s_\x8?\x8¶·\x8\x8\x8
Offset 385, 17 lines modified		Offset 385, 17 lines modified
385	practical;·there·are·utility·functions·defined·to·create·them·with·all	385	practical;·there·are·utility·functions·defined·to·create·them·with·all
386	necessary·ingredients.·For·example,·we·can·create·sphere·particle·using	386	necessary·ingredients.·For·example,·we·can·create·sphere·particle·using
387	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e:	387	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e:
388	Yade·[31]:·s=utils.sphere(center=[0,0,0],radius=1)	388	Yade·[31]:·s=utils.sphere(center=[0,0,0],radius=1)

389	Yade·[32]:·s.shape,·s.state,·s.mat,·s.bound	389	Yade·[32]:·s.shape,·s.state,·s.mat,·s.bound
390	Out[32]:	390	Out[32]:
391	(<Sphere·instance·at·0xd15~~655~~0>,	391	(<Sphere·instance·at·0x30150a80>,
392	·<State·instance·at·0x~~d18723~~0>,	392	·<State·instance·at·0x300e9690>,
393	·<FrictMat·instance·at·0xd1~~a93f~~0>,	393	·<FrictMat·instance·at·0x301b5640>,
394	·None)	394	·None)

395	Yade·[33]:·s.state.pos	395	Yade·[33]:·s.state.pos
396	Out[33]:·Vector3(0,0,0)	396	Out[33]:·Vector3(0,0,0)

397	Yade·[34]:·s.shape.radius	397	Yade·[34]:·s.shape.radius
398	Out[34]:·1.0	398	Out[34]:·1.0
Offset 471, 29 lines modified		Offset 471, 29 lines modified
471	_\x8[_\x8__\x8i_\x8m_\x8a_\x8g_\x8e_\x8s_\x8/_\x8i_\x8n_\x8t_\x8e_\x8r_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n_\x8-_\x8c_\x8l_\x8a_\x8s_\x8s_\x8e_\x8s_\x8._\x8p_\x8n_\x8g_\x8]	471	_\x8[_\x8__\x8i_\x8m_\x8a_\x8g_\x8e_\x8s_\x8/_\x8i_\x8n_\x8t_\x8e_\x8r_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n_\x8-_\x8c_\x8l_\x8a_\x8s_\x8s_\x8e_\x8s_\x8._\x8p_\x8n_\x8g_\x8]
472	Examples·of·concrete·classes·that·might·be·used·to·describe·an·_\x8I_\x8n_\x8t_\x8e_\x8r_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n:	472	Examples·of·concrete·classes·that·might·be·used·to·describe·an·_\x8I_\x8n_\x8t_\x8e_\x8r_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n:
473	_\x8I_\x8G_\x8e_\x8o_\x8m,·_\x8G_\x8e_\x8n_\x8e_\x8r_\x8i_\x8c_\x8S_\x8p_\x8h_\x8e_\x8r_\x8e_\x8s_\x8C_\x8o_\x8n_\x8t_\x8a_\x8c_\x8t,·_\x8P_\x8o_\x8l_\x8y_\x8h_\x8e_\x8d_\x8r_\x8a_\x8G_\x8e_\x8o_\x8m,·_\x8C_\x8y_\x8l_\x8S_\x8c_\x8G_\x8e_\x8o_\x8m,·_\x8I_\x8P_\x8h_\x8y_\x8s,·_\x8N_\x8o_\x8r_\x8m_\x8P_\x8h_\x8y_\x8s,	473	_\x8I_\x8G_\x8e_\x8o_\x8m,·_\x8G_\x8e_\x8n_\x8e_\x8r_\x8i_\x8c_\x8S_\x8p_\x8h_\x8e_\x8r_\x8e_\x8s_\x8C_\x8o_\x8n_\x8t_\x8a_\x8c_\x8t,·_\x8P_\x8o_\x8l_\x8y_\x8h_\x8e_\x8d_\x8r_\x8a_\x8G_\x8e_\x8o_\x8m,·_\x8C_\x8y_\x8l_\x8S_\x8c_\x8G_\x8e_\x8o_\x8m,·_\x8I_\x8P_\x8h_\x8y_\x8s,·_\x8N_\x8o_\x8r_\x8m_\x8P_\x8h_\x8y_\x8s,
474	_\x8N_\x8o_\x8r_\x8m_\x8S_\x8h_\x8e_\x8a_\x8r_\x8P_\x8h_\x8y_\x8s,·_\x8F_\x8r_\x8i_\x8c_\x8t_\x8P_\x8h_\x8y_\x8s._\x8¶	474	_\x8N_\x8o_\x8r_\x8m_\x8S_\x8h_\x8e_\x8a_\x8r_\x8P_\x8h_\x8y_\x8s,·_\x8F_\x8r_\x8i_\x8c_\x8t_\x8P_\x8h_\x8y_\x8s._\x8¶
475	Suppose·now·interactions·have·been·already·created.·We·can·access·them·by·the	475	Suppose·now·interactions·have·been·already·created.·We·can·access·them·by·the
476	id·pair:	476	id·pair:
477	Yade·[41]:·O.interactions[0,1]	477	Yade·[41]:·O.interactions[0,1]
478	Out[41]:·<Interaction·instance·at·0x~~d12~~a550>	478	Out[41]:·<Interaction·instance·at·0x300afe60>

479	Yade·[42]:·O.interactions[1,0]·····#·order·of·ids·is·not·important	479	Yade·[42]:·O.interactions[1,0]·····#·order·of·ids·is·not·important
480	Out[42]:·<Interaction·instance·at·0x~~d12~~a550>	480	Out[42]:·<Interaction·instance·at·0x300afe60>

481	Yade·[43]:·i=O.interactions[0,1]	481	Yade·[43]:·i=O.interactions[0,1]

482	Yade·[44]:·i.id1,i.id2	482	Yade·[44]:·i.id1,i.id2
483	Out[44]:·(0,·1)	483	Out[44]:·(0,·1)

484	Yade·[45]:·i.geom	484	Yade·[45]:·i.geom
485	Out[45]:·<ScGeom·instance·at·0xd~~12d00~~0>	485	Out[45]:·<ScGeom·instance·at·0x2d857be0>

486	Yade·[46]:·i.phys	486	Yade·[46]:·i.phys
487	Out[46]:·<FrictPhys·instance·at·0xd036f30>	487	Out[46]:·<FrictPhys·instance·at·0x30162cd0>

488	Yade·[47]:·O.interactions[100,10111]·····#·asking·for·non·existing·interaction	488	Yade·[47]:·O.interactions[100,10111]·····#·asking·for·non·existing·interaction
489	throws·exception	489	throws·exception
490	[0;31m-------------------------------------------------------------------------	490	[0;31m-------------------------------------------------------------------------
491	--\x1b[0m	491	--\x1b[0m
492	[0;31mIndexError\x1b[0m································Traceback·(most·recent·call	492	[0;31mIndexError\x1b[0m································Traceback·(most·recent·call
493	last)	493	last)


Offset 14971, 23 lines modified		Offset 14971, 23 lines modified
14971	inheritancegraphbodycontainer·std:label·-1·yade.wrapper.html#$·-	14971	inheritancegraphbodycontainer·std:label·-1·yade.wrapper.html#$·-
14972	inheritancegraphbound·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·Bound.	14972	inheritancegraphbound·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·Bound.
14973	inheritancegraphboundarycontroller·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·BoundaryController.	14973	inheritancegraphboundarycontroller·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·BoundaryController.
14974	inheritancegraphbounddispatcher·std:label·-1·yade.wrapper.html#$·-	14974	inheritancegraphbounddispatcher·std:label·-1·yade.wrapper.html#$·-
14975	inheritancegraphboundfunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·BoundFunctor.	14975	inheritancegraphboundfunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·BoundFunctor.
14976	inheritancegraphcell·std:label·-1·yade.wrapper.html#$·-	14976	inheritancegraphcell·std:label·-1·yade.wrapper.html#$·-
14977	inheritancegraphcollider·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·Collider.	14977	inheritancegraphcollider·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·Collider.
14978	inheritancegraphdispatcher·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·Dispatcher,·gray·dashed·classes·are·discussed·in·their·own·sections:··I~~Phys~~Dispatcher,·~~Inter~~na~~lForc~~eDispatcher,·I~~Geom~~Dispatcher,·~~Bound~~Dispatcher,·~~Law~~Dispatcher.	14978	inheritancegraphdispatcher·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·Dispatcher,·gray·dashed·classes·are·discussed·in·their·own·sections:··InternalForceDispatcher,·LawDispatcher,·IPhysDispatcher,·IGeomDispatcher,·BoundDispatcher.
14979	inheritancegraphfieldapplier·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·FieldApplier.	14979	inheritancegraphfieldapplier·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·FieldApplier.
14980	inheritancegraphfilegenerator·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·FileGenerator.	14980	inheritancegraphfilegenerator·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·FileGenerator.
14981	inheritancegraphforcecontainer·std:label·-1·yade.wrapper.html#$·-	14981	inheritancegraphforcecontainer·std:label·-1·yade.wrapper.html#$·-
14982	inheritancegraphfunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·Functor,·gray·dashed·classes·are·discussed·in·their·own·sections:··~~BoundF~~unctor,·GlBo~~und~~Functor,·~~IGeom~~Functor,·LawFunctor,·GlIGeomFunctor,·IPhysFunctor,·Gl~~State~~Functor,·GlShapeFunctor,·GlI~~Phys~~Functor,·In~~ter~~nalForceFunctor.	14982	inheritancegraphfunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·Functor,·gray·dashed·classes·are·discussed·in·their·own·sections:··InternalForceFunctor,·GlShapeFunctor,·LawFunctor,·IGeomFunctor,·GlIPhysFunctor,·GlBoundFunctor,·GlStateFunctor,·GlIGeomFunctor,·BoundFunctor,·IPhysFunctor.
14983	inheritancegraphglboundfunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·GlBoundFunctor.	14983	inheritancegraphglboundfunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·GlBoundFunctor.
14984	inheritancegraphgligeomfunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·GlIGeomFunctor.	14984	inheritancegraphgligeomfunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·GlIGeomFunctor.
14985	inheritancegraphgliphysfunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·GlIPhysFunctor.	14985	inheritancegraphgliphysfunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·GlIPhysFunctor.
14986	inheritancegraphglobalengine·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·GlobalEngine,·gray·dashed·classes·are·discussed·in·their·own·sections:··Collider,·PeriodicEngine,·BoundaryContro~~ller,·Fie~~l~~dApp~~lier.	14986	inheritancegraphglobalengine·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·GlobalEngine,·gray·dashed·classes·are·discussed·in·their·own·sections:··FieldApplier,·Collider,·PeriodicEngine,·BoundaryController.
14987	inheritancegraphglshapefunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·GlShapeFunctor.	14987	inheritancegraphglshapefunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·GlShapeFunctor.
14988	inheritancegraphglstatefunctor·std:label·-1·yade.wrapper.html#$·-	14988	inheritancegraphglstatefunctor·std:label·-1·yade.wrapper.html#$·-
14989	inheritancegraphigeom·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·IGeom.	14989	inheritancegraphigeom·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·IGeom.
14990	inheritancegraphigeomdispatcher·std:label·-1·yade.wrapper.html#$·-	14990	inheritancegraphigeomdispatcher·std:label·-1·yade.wrapper.html#$·-
14991	inheritancegraphigeomfunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·IGeomFunctor.	14991	inheritancegraphigeomfunctor·std:label·-1·yade.wrapper.html#$·Inheritance·graph·of·IGeomFunctor.
14992	inheritancegraphinteraction·std:label·-1·yade.wrapper.html#$·-	14992	inheritancegraphinteraction·std:label·-1·yade.wrapper.html#$·-
14993	inheritancegraphinteractioncontainer·std:label·-1·yade.wrapper.html#$·-	14993	inheritancegraphinteractioncontainer·std:label·-1·yade.wrapper.html#$·-


Offset 1109, 19 lines modified		Offset 1109, 19 lines modified
1109	<wire>0</wire>	1109	<wire>0</wire>
1110	<highlight>0</highlight>	1110	<highlight>0</highlight>
1111	</px>	1111	</px>
1112	</subD>	1112	</subD>
1113	<tags·class_id="6"·tracking_level="0"·version="0">	1113	<tags·class_id="6"·tracking_level="0"·version="0">
1114	<count>5</count>	1114	<count>5</count>
1115	<item_version>0</item_version>	1115	<item_version>0</item_version>
1116	<item>author=~(pbuilder1@i~~nfom02~~-~~amd64~~)</item>	1116	<item>author=second~user~(pbuilder2@i-capture-the-hostname)</item>
1117	<item>isoTime=20251216T~~09163~~5</item>	1117	<item>isoTime=20241114T124015</item>
1118	<item>id=20251216T091635p3949071</item>
1119	<item>d.id=20251216T091635p3949071</item>
1120	<item>id.d=20251216T~~09163~~5p~~3949071~~</item>	1118	<item>id=20241114T124015p4030302</item>
		1119	<item>d.id=20241114T124015p4030302</item>
		1120	<item>id.d=20241114T124015p4030302</item>
1121	</tags>	1121	</tags>
1122	<engines·class_id="7"·tracking_level="0"·version="0">	1122	<engines·class_id="7"·tracking_level="0"·version="0">
1123	<count>1</count>	1123	<count>1</count>
1124	<item_version>1</item_version>	1124	<item_version>1</item_version>
1125	<item·class_id="8"·tracking_level="0"·version="1">	1125	<item·class_id="8"·tracking_level="0"·version="1">
1126	<px·class_id="10"·class_name="yade::GravityEngine"·tracking_level="1"	1126	<px·class_id="10"·class_name="yade::GravityEngine"·tracking_level="1"
1127	version="0"·object_id="_4">	1127	version="0"·object_id="_4">
Offset 1840, 15 lines modified		Offset 1840, 15 lines modified
1840	Yade·[42]:·ld=LawDispatcher([Law2_ScGeom_CpmPhys_Cpm()])	1840	Yade·[42]:·ld=LawDispatcher([Law2_ScGeom_CpmPhys_Cpm()])

1841	Yade·[43]:·ld.dispMatrix()	1841	Yade·[43]:·ld.dispMatrix()
1842	Out[43]:·{('GenericSpheresContact',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm'}	1842	Out[43]:·{('GenericSpheresContact',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm'}

1843	#·see·how·the·entry·for·ScGridCoGeom·will·be·filled·after·this·request	1843	#·see·how·the·entry·for·ScGridCoGeom·will·be·filled·after·this·request
1844	Yade·[44]:·ld.dispFunctor(ScGridCoGeom(),CpmPhys())	1844	Yade·[44]:·ld.dispFunctor(ScGridCoGeom(),CpmPhys())
1845	Out[44]:·<Law2_ScGeom_CpmPhys_Cpm·instance·at·0xd1~~41af~~0>	1845	Out[44]:·<Law2_ScGeom_CpmPhys_Cpm·instance·at·0x30176720>

1846	Yade·[45]:·ld.dispMatrix()	1846	Yade·[45]:·ld.dispMatrix()
1847	Out[45]:	1847	Out[45]:
1848	{('GenericSpheresContact',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm',	1848	{('GenericSpheresContact',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm',
1849	·('ScGridCoGeom',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm'}	1849	·('ScGridCoGeom',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm'}
1850	\x8\x8\x8·O\x8Op\x8pe\x8en\x8nG\x8GL\x8L·f\x8fu\x8un\x8nc\x8ct\x8to\x8or\x8rs\x8s_\x8?\x8¶·\x8\x8\x8	1850	\x8\x8\x8·O\x8Op\x8pe\x8en\x8nG\x8GL\x8L·f\x8fu\x8un\x8nc\x8ct\x8to\x8or\x8rs\x8s_\x8?\x8¶·\x8\x8\x8
1851	OpenGL·rendering·is·being·done·also·by·1D·functors·(dispatched·for·the·type·to	1851	OpenGL·rendering·is·being·done·also·by·1D·functors·(dispatched·for·the·type·to
Offset 1980, 39 lines modified		Offset 1980, 39 lines modified
1980	Yade·[52]:·O.run(50);·O.wait()	1980	Yade·[52]:·O.run(50);·O.wait()

1981	Yade·[53]:·yade.timing.stats()	1981	Yade·[53]:·yade.timing.stats()
1982	Name····················································Count	1982	Name····················································Count
1983	Time············Rel.·time	1983	Time············Rel.·time
1984	-------------------------------------------------------------------------------	1984	-------------------------------------------------------------------------------
1985	------------------------	1985	------------------------
1986	"firstEngine"········································50·············73.767us	1986	"firstEngine"········································50·············51.861us
1987	0.87%	1987	0.48%
1988	InsertionSortCollider································25···········~~2535~~.~~693~~us	1988	InsertionSortCollider································25···········1880.826us
1989	29.97%	1989	17.52%
1990	InteractionLoop······································50············3907.36us	1990	InteractionLoop······································50···········3104.225us
1991	46.19%	1991	28.91%
1992	GlobalStiffnessTimeStepper····························2·············26.~~129~~us	1992	GlobalStiffnessTimeStepper····························2·············24.788us
1993	0.31%	1993	0.23%
1994	TriaxialCompressionEngine····························50············~~597~~.418us	1994	TriaxialCompressionEngine····························50············430.598us
1995	7.06%	1995	4.01%
1996	TriaxialStateRecorder·································3···········~~·322~~.~~354~~us	1996	TriaxialStateRecorder·································3···········4441.926us
1997	3.81%	1997	41.37%
1998	NewtonIntegrator·····································50············~~996~~.~~769~~us	1998	NewtonIntegrator·····································50············803.117us
1999	11.78%	1999	7.48%
2000	··forces·sync··········································50··············8.~~723~~us	2000	··forces·sync··········································50··············7.086us
2001	0.88%	2001	0.88%
2002	··motion·integration···································50············~~960~~.~~885~~us	2002	··motion·integration···································50············776.056us
2003	96.40%	2003	96.63%
2004	··sync·max·vel·········································50··············5.655us	2004	··sync·max·vel·········································50··············5.335us
2005	0.57%	2005	0.66%
2006	··terminate············································50··············3.~~817~~us	2006	··terminate············································50··············2.794us
2007	0.38%	2007	0.35%
2008	··TOTAL···············································200·············9~~79.08~~us	2008	··TOTAL···············································200············791.271us
2009	98.23%	2009	98.52%
2010	TOTAL····························································~~··8459.~~49us	2010	TOTAL····························································10737.341us
2011	100.00%	2011	100.00%
2012	Exec·count·and·time·can·be·accessed·and·manipulated·through·Engine::timingInfo	2012	Exec·count·and·time·can·be·accessed·and·manipulated·through·Engine::timingInfo
2013	from·c++·or·Engine().execCount·and·Engine().execTime·properties·in·Python.	2013	from·c++·or·Engine().execCount·and·Engine().execTime·properties·in·Python.
2014	\x8\x8\x8·I\x8In\x8n-\x8-e\x8en\x8ng\x8gi\x8in\x8ne\x8e·a\x8an\x8nd\x8d·i\x8in\x8n-\x8-f\x8fu\x8un\x8nc\x8ct\x8to\x8or\x8r·t\x8ti\x8im\x8mi\x8in\x8ng\x8g_\x8?\x8¶·\x8\x8\x8	2014	\x8\x8\x8·I\x8In\x8n-\x8-e\x8en\x8ng\x8gi\x8in\x8ne\x8e·a\x8an\x8nd\x8d·i\x8in\x8n-\x8-f\x8fu\x8un\x8nc\x8ct\x8to\x8or\x8r·t\x8ti\x8im\x8mi\x8in\x8ng\x8g_\x8?\x8¶·\x8\x8\x8
2015	Timing·within·engines·(and·functors)·is·based·on·_\x8T_\x8i_\x8m_\x8i_\x8n_\x8g_\x8D_\x8e_\x8l_\x8t_\x8a_\x8s·class·which·is·by	2015	Timing·within·engines·(and·functors)·is·based·on·_\x8T_\x8i_\x8m_\x8i_\x8n_\x8g_\x8D_\x8e_\x8l_\x8t_\x8a_\x8s·class·which·is·by
2016	default·instantiated·in·engines·and·functors·as·Engine::timingDeltas·and	2016	default·instantiated·in·engines·and·functors·as·Engine::timingDeltas·and
2017	Functor::timingDeltas·(_\x8E_\x8n_\x8g_\x8i_\x8n_\x8e_\x8._\x8t_\x8i_\x8m_\x8i_\x8n_\x8g_\x8D_\x8e_\x8l_\x8t_\x8a_\x8s·and·_\x8F_\x8u_\x8n_\x8c_\x8t_\x8o_\x8r_\x8._\x8t_\x8i_\x8m_\x8i_\x8n_\x8g_\x8D_\x8e_\x8l_\x8t_\x8a_\x8s·in·Python).	2017	Functor::timingDeltas·(_\x8E_\x8n_\x8g_\x8i_\x8n_\x8e_\x8._\x8t_\x8i_\x8m_\x8i_\x8n_\x8g_\x8D_\x8e_\x8l_\x8t_\x8a_\x8s·and·_\x8F_\x8u_\x8n_\x8c_\x8t_\x8o_\x8r_\x8._\x8t_\x8i_\x8m_\x8i_\x8n_\x8g_\x8D_\x8e_\x8l_\x8t_\x8a_\x8s·in·Python).


Offset 62501, 25 lines modified		Offset 62501, 27 lines modified
62501	········"040":·28,	62501	········"040":·28,
62502	········"0402":·28,	62502	········"0402":·28,
62503	········"04022023":·28,	62503	········"04022023":·28,
62504	········"041":·28,	62504	········"041":·28,
62505	········"041301":·28,	62505	········"041301":·28,
62506	········"0423":·28,	62506	········"0423":·28,
62507	········"0471975511965976":·47,	62507	········"0471975511965976":·47,
		62508	········"049238488236937439":·35,
62508	········"05":·[28,·29,·31,·32,·33,·34,·46,·47,·60,·67],	62509	········"05":·[28,·29,·31,·32,·33,·34,·46,·47,·60,·67],
62509	········"0500":·28,	62510	········"0500":·28,
62510	········"051":·28,	62511	········"051":·28,
62511	········"052":·28,	62512	········"052":·28,
62512	········"0527":·28,	62513	········"0527":·28,
62513	········"052905":·28,	62514	········"052905":·28,
62514	········"0530":·60,	62515	········"0530":·60,
62515	········"0558":·28,	62516	········"0558":·28,
62516	········"056":·28,	62517	········"056":·28,
62517	········"0560":·28,	62518	········"0560":·28,
62518	········"05642":·28,	62519	········"05642":·28,
		62520	········"056u":·27,
62519	········"0579":·28,	62521	········"0579":·28,
62520	········"05d":·66,	62522	········"05d":·66,
62521	········"06":·[27,·28,·29,·33,·44,·57,·60,·66],	62523	········"06":·[27,·28,·29,·33,·44,·57,·60,·66],
62522	········"06016042":·28,	62524	········"06016042":·28,
62523	········"062203":·28,	62525	········"062203":·28,
62524	········"0627":·28,	62526	········"0627":·28,
62525	········"064302":·[28,·29],	62527	········"064302":·[28,·29],
Offset 62529, 18 lines modified		Offset 62531, 18 lines modified
62529	········"0714":·28,	62531	········"0714":·28,
62530	········"0731":·28,	62532	········"0731":·28,
62531	········"0733":·29,	62533	········"0733":·29,
62532	········"0740":·28,	62534	········"0740":·28,
62533	········"0785":·28,	62535	········"0785":·28,
62534	········"08":·[27,·28,·29,·47,·59,·65],	62536	········"08":·[27,·28,·29,·47,·59,·65],
62535	········"0815":·28,	62537	········"0815":·28,
		62538	········"086u":·27,
62536	········"08927029208022474":·29,	62539	········"08927029208022474":·29,
62537	········"08927029908022097":·29,	62540	········"08927029908022097":·29,
62538	········"08a":·53,	62541	········"08a":·53,
62539	········"08u":·27,
62540	········"09":·[28,·29,·65],	62542	········"09":·[28,·29,·65],
62541	········"090192":·29,	62543	········"090192":·29,
62542	········"09057":·28,	62544	········"09057":·28,
62543	········"0b000011":·[60,·67],	62545	········"0b000011":·[60,·67],
62544	········"0b011":·34,	62546	········"0b011":·34,
62545	········"0b100101":·60,	62547	········"0b100101":·60,
62546	········"0b1101":·60,	62548	········"0b1101":·60,
Offset 62557, 53 lines modified		Offset 62559, 53 lines modified
62557	········"0x00007f0fcd0b4b23":·47,	62559	········"0x00007f0fcd0b4b23":·47,
62558	········"0x00007f0fcd87ed57":·47,	62560	········"0x00007f0fcd87ed57":·47,
62559	········"0x00007f0fcd88c7e9":·47,	62561	········"0x00007f0fcd88c7e9":·47,
62560	········"0x00007f0fcd88cb20":·47,	62562	········"0x00007f0fcd88cb20":·47,
62561	········"0x00007f0fcd8f4f7d":·47,	62563	········"0x00007f0fcd8f4f7d":·47,
62562	········"0x1c54620":·47,	62564	········"0x1c54620":·47,
62563	········"0x2d06770":·27,	62565	········"0x2d06770":·27,
		62566	········"0x2d857be0":·23,
		62567	········"0x2dd02260":·[60,·67],
		62568	········"0x2eb7eb60":·66,
		62569	········"0x2f0d4fb0":·43,
		62570	········"0x2fa06990":·43,
		62571	········"0x300afe60":·23,
		62572	········"0x300e9690":·23,
		62573	········"0x3012bac0":·47,
		62574	········"0x30142550":·35,
		62575	········"0x30150a80":·23,
		62576	········"0x30162cd0":·23,
		62577	········"0x30176720":·27,
		62578	········"0x30187ad0":·35,
		62579	········"0x301b5640":·23,
		62580	········"0x30236460":·43,
		62581	········"0x302a4db0":·43,
		62582	········"0x303328d0":·35,
		62583	········"0x3038b6c0":·35,
		62584	········"0x303b6420":·47,
		62585	········"0x303bee80":·47,
		62586	········"0x303cf390":·35,
		62587	········"0x30544c70":·43,
62564	········"0x7f0fb1268710":·47,	62588	········"0x7f0fb1268710":·47,
62565	········"0x7f0fb29f2710":·47,	62589	········"0x7f0fb29f2710":·47,
62566	········"0x7f0fb31f3710":·47,	62590	········"0x7f0fb31f3710":·47,
62567	········"0x7f0fcee53700":·47,	62591	········"0x7f0fcee53700":·47,
62568	········"0x7f1e4231e440":·25,	62592	········"0x7f1e4231e440":·25,
62569	········"0x7f20086a1490":·25,	62593	········"0x7f20086a1490":·25,
62570	········"0x7f21a8c8d3a0":·25,	62594	········"0x7f21a8c8d3a0":·25,
62571	········"0x7f3142e43440":·25,	62595	········"0x7f3142e43440":·25,
62572	········"0x7f5b61ae9440":·25,	62596	········"0x7f5b61ae9440":·25,
		62597	········"0x7f5d66f042e0":·23,
62573	········"0x7f622b47f490":·25,	62598	········"0x7f622b47f490":·25,
62574	········"0x7f8dc7b73440":·25,	62599	········"0x7f8dc7b73440":·25,
62575	········"0x7f9231213490":·25,	62600	········"0x7f9231213490":·25,
62576	········"0x7f9c0a399490":·25,	62601	········"0x7f9c0a399490":·25,
62577	········"0x7fa5fc6cc2e0":·23,
62578	········"0x7fb699b1a440":·25,	62602	········"0x7fb699b1a440":·25,
62579	········"0x7fdd466b8440":·25,	62603	········"0x7fdd466b8440":·25,
62580	········"0x7feb979403a0":·25,	62604	········"0x7feb979403a0":·25,
62581	········"0xa9ad0a0":·35,
62582	········"0xacfea40":·[60,·67],
62583	········"0xbb7ce10":·66,
62584	········"0xbee2410":·43,
62585	········"0xc0ab390":·43,
62586	········"0xd036f30":·23,
62587	········"0xd11cfb0":·47,
62588	········"0xd12a550":·23,
62589	········"0xd12d000":·23,
62590	········"0xd141af0":·27,
62591	········"0xd156550":·23,
62592	········"0xd16a2b0":·35,
62593	········"0xd184cc0":·47,
62594	········"0xd187230":·23,
62595	········"0xd1a93f0":·23,
62596	········"0xd246480":·43,
62597	········"0xd2ecfa0":·47,
62598	········"0xd2f0470":·43,
62599	········"0xd2f8f20":·35,
62600	········"0xd30b1d0":·35,
62601	········"0xd39d630":·35,
62602	········"0xd3def90":·43,
62603	········"1":·[0,·1,·2,·3,·4,·5,·6,·13,·14,·16,·22,·23,·25,·26,·27,·28,·29,·32,·33,·34,·35,·39,·43,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·62,·63,·65,·66,·67,·68,·69],	62605	········"1":·[0,·1,·2,·3,·4,·5,·6,·13,·14,·16,·22,·23,·25,·26,·27,·28,·29,·32,·33,·34,·35,·39,·43,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·62,·63,·65,·66,·67,·68,·69],
62604	········"10":·[0,·1,·2,·3,·4,·5,·7,·13,·22,·23,·25,·26,·27,·28,·29,·33,·34,·35,·41,·43,·45,·46,·47,·50,·51,·56,·59,·60,·63,·66,·67,·69],	62606	········"10":·[0,·1,·2,·3,·4,·5,·7,·13,·22,·23,·25,·26,·27,·28,·29,·33,·34,·35,·41,·43,·45,·46,·47,·50,·51,·56,·59,·60,·63,·66,·67,·69],
62605	········"100":·[6,·23,·25,·27,·32,·33,·34,·35,·41,·45,·46,·47,·65],	62607	········"100":·[6,·23,·25,·27,·32,·33,·34,·35,·41,·45,·46,·47,·65],
62606	········"1000":·[1,·23,·26,·32,·33,·34,·41,·44,·45,·46,·47,·56,·60,·66,·67],	62608	········"1000":·[1,·23,·26,·32,·33,·34,·41,·44,·45,·46,·47,·56,·60,·66,·67],
62607	········"10000":·[33,·41,·60,·67],	62609	········"10000":·[33,·41,·60,·67],
62608	········"100000":·23,	62610	········"100000":·23,
62609	········"1000000":·3,	62611	········"1000000":·3,
Offset 62621, 22 lines modified		Offset 62623, 22 lines modified
62621	········"101090":·28,	62623	········"101090":·28,
62622	········"10111":·23,	62624	········"10111":·23,
Max diff block lines reached; 21191/25027 bytes (84.67%) of diff not shown.


Offset 317, 15 lines modified		Offset 317, 15 lines modified
317	module;·to·mention·a·few·of·them,·they·are·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e,·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t,	317	module;·to·mention·a·few·of·them,·they·are·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e,·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t,
318	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l.	318	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l.
319	Yade·[43]:·s=utils.sphere((0,0,0),radius=1)····#·create·sphere·particle	319	Yade·[43]:·s=utils.sphere((0,0,0),radius=1)····#·create·sphere·particle
320	centered·at·(0,0,0)·with·radius=1	320	centered·at·(0,0,0)·with·radius=1

321	Yade·[44]:·s.shape·······················#·s.shape·describes·the·geometry·of	321	Yade·[44]:·s.shape·······················#·s.shape·describes·the·geometry·of
322	the·particle	322	the·particle
323	Out[44]:·<Sphere·instance·at·0xd3~~9d63~~0>	323	Out[44]:·<Sphere·instance·at·0x303cf390>

324	Yade·[45]:·s.shape.radius················#·we·already·know·the·Sphere·class	324	Yade·[45]:·s.shape.radius················#·we·already·know·the·Sphere·class
325	Out[45]:·1.0	325	Out[45]:·1.0

326	Yade·[46]:·s.state.mass,·s.state.inertia·#·inertia·is·computed·from·density·and	326	Yade·[46]:·s.state.mass,·s.state.inertia·#·inertia·is·computed·from·density·and
327	geometry	327	geometry
328	Out[46]:	328	Out[46]:
Offset 352, 51 lines modified		Offset 352, 50 lines modified
352	Yade·[50]:·from·yade·import·pack	352	Yade·[50]:·from·yade·import·pack

353	Yade·[51]:·sp=pack.SpherePack()···················#·create·an·empty·cloud;	353	Yade·[51]:·sp=pack.SpherePack()···················#·create·an·empty·cloud;
354	SpherePack·contains·only·geometrical·information	354	SpherePack·contains·only·geometrical·information

355	Yade·[52]:·sp.makeCloud((1,1,1),(2,2,2),rMean=.2)·#·put·spheres·with·defined	355	Yade·[52]:·sp.makeCloud((1,1,1),(2,2,2),rMean=.2)·#·put·spheres·with·defined
356	radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)	356	radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)
357	Out[52]:·7	357	Out[52]:·6

358	Yade·[53]:·for·c,r·in·sp:·print(c,r)···············#·print·center·and·radius·of	358	Yade·[53]:·for·c,r·in·sp:·print(c,r)···············#·print·center·and·radius·of
359	all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)	359	all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)
360	···....:	360	···....:
		361	Vector3(1.786438398007278439,1.422664901800144266,1.412979460974228774)·0.2
		362	Vector3(1.450269069371171948,1.655630676255681388,1.482458438983897731)·0.2
		363	Vector3(1.419051080991349467,1.204814396613702154,1.317471685764078027)·0.2
		364	Vector3(1.203815082158440797,1.21699220834480637,1.726883391635978926)·0.2
		365	Vector3(1.789544955537425652,1.786716625597271957,1.662674129395844025)·0.2
		366	Vector3(1.761646975490197109,1.30887077539351715,1.798498157859674595)·0.2
361	Vector3(1.394731201966461942,1.664484901313465048,1.385373125767966007)·0.2
362	Vector3(1.573276978834206252,1.277666264721350142,1.599516177373649706)·0.2
363	Vector3(1.202521155162297184,1.242893491495172364,1.379861281561194364)·0.2
364	Vector3(1.580375770231970511,1.712959861901591552,1.794676038524295913)·0.2
365	Vector3(1.662482666771510242,1.290558435897736,1.20444512769806944)·0.2
366	Vector3(1.209410136182883067,1.449836977528289994,1.762851729386274435)·0.2
367	Vector3(1.773604370782944528,1.740304053778669813,1.267729379682105861)·0.2

368	Yade·[54]:·sp.toSimulation()······················#·create·particles·and·add	367	Yade·[54]:·sp.toSimulation()······················#·create·particles·and·add
369	them·to·the·simulation	368	them·to·the·simulation
370	Out[54]:·[25,·26,·27,·28,·29,·30~~,·31~~]	369	Out[54]:·[25,·26,·27,·28,·29,·30]
371	\x8\x8\x8·B\x8Bo\x8ou\x8un\x8nd\x8da\x8ar\x8ri\x8ie\x8es\x8s_\x8?\x8¶·\x8\x8\x8	370	\x8\x8\x8·B\x8Bo\x8ou\x8un\x8nd\x8da\x8ar\x8ri\x8ie\x8es\x8s_\x8?\x8¶·\x8\x8\x8
372	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t·(triangle·_\x8F_\x8a_\x8c_\x8e_\x8t)·and·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l·(infinite·axes-aligned·plane·_\x8W_\x8a_\x8l_\x8l)	371	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t·(triangle·_\x8F_\x8a_\x8c_\x8e_\x8t)·and·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l·(infinite·axes-aligned·plane·_\x8W_\x8a_\x8l_\x8l)
373	geometries·are·typically·used·to·define·boundaries.·For·instance,·a·“floor”·for	372	geometries·are·typically·used·to·define·boundaries.·For·instance,·a·“floor”·for
374	the·simulation·can·be·created·like·this:	373	the·simulation·can·be·created·like·this:
375	Yade·[55]:·O.bodies.append(utils.wall(-1,axis=2))	374	Yade·[55]:·O.bodies.append(utils.wall(-1,axis=2))
376	Out[55]:·32	375	Out[55]:·31
377	There·are·other·conveinence·functions·(like·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t_\x8B_\x8o_\x8x·for·creating·closed	376	There·are·other·conveinence·functions·(like·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t_\x8B_\x8o_\x8x·for·creating·closed
378	or·open·rectangular·box,·or·family·of·_\x8y_\x8m_\x8p_\x8o_\x8r_\x8t·functions)	377	or·open·rectangular·box,·or·family·of·_\x8y_\x8m_\x8p_\x8o_\x8r_\x8t·functions)
379	\x8\x8\x8\x8·L\x8Lo\x8oo\x8ok\x8k·i\x8in\x8ns\x8si\x8id\x8de\x8e_\x8?\x8¶·\x8\x8\x8\x8	378	\x8\x8\x8\x8·L\x8Lo\x8oo\x8ok\x8k·i\x8in\x8ns\x8si\x8id\x8de\x8e_\x8?\x8¶·\x8\x8\x8\x8
380	The·simulation·can·be·inspected·in·several·ways.·All·data·can·be·accessed·from	379	The·simulation·can·be·inspected·in·several·ways.·All·data·can·be·accessed·from
381	python·directly:	380	python·directly:
382	Yade·[56]:·len(O.bodies)	381	Yade·[56]:·len(O.bodies)
383	Out[56]:·33	382	Out[56]:·32

384	Yade·[57]:·O.bodies[10].shape.radius···#·radius·of·body·#10·(will·give·error·if	383	Yade·[57]:·O.bodies[10].shape.radius···#·radius·of·body·#10·(will·give·error·if
385	not·sphere,·since·only·spheres·have·radius·defined)	384	not·sphere,·since·only·spheres·have·radius·defined)
386	Out[57]:·0.16	385	Out[57]:·0.16

387	Yade·[58]:·O.bodies[12].state.pos······#·position·of·body·#12	386	Yade·[58]:·O.bodies[12].state.pos······#·position·of·body·#12
388	Out[58]:·Vector3	387	Out[58]:·Vector3
389	(1.~~305156636705882~~445,1.638386617~~949~~822099,1.1061983342226~~66446~~)	388	(1.049238488236937439,1.880856857506822299,1.810353846246500531)
390	Besides·that,·Yade·says·this·at·startup·(the·line·preceding·the·command-line):	389	Besides·that,·Yade·says·this·at·startup·(the·line·preceding·the·command-line):
391	[[·^L·clears·screen,·^U·kills·line.·F12·controller,·F11·3d·view,·F10·both,·F9	390	[[·^L·clears·screen,·^U·kills·line.·F12·controller,·F11·3d·view,·F10·both,·F9
392	generator,·F8·plot.·]]	391	generator,·F8·plot.·]]
393	··Controller	392	··Controller
394	······Pressing·F12·brings·up·a·window·for·controlling·the·simulation.·Although	393	······Pressing·F12·brings·up·a·window·for·controlling·the·simulation.·Although
395	······typically·no·human·intervention·is·done·in·large·simulations·(which·run	394	······typically·no·human·intervention·is·done·in·large·simulations·(which·run
396	······“headless”,·without·any·graphical·interaction),·it·can·be·handy·in·small	395	······“headless”,·without·any·graphical·interaction),·it·can·be·handy·in·small
Offset 414, 16 lines modified		Offset 413, 16 lines modified
414	······simulation.·In·particular,·one·can·have·a·look·at·engines,·particles	413	······simulation.·In·particular,·one·can·have·a·look·at·engines,·particles
415	······(B\x8Bo\x8od\x8di\x8ie\x8es\x8s)·and·interactions·(I\x8In\x8nt\x8te\x8er\x8ra\x8ac\x8ct\x8ti\x8io\x8on\x8ns\x8s).·Clicking·at·each·of·the	414	······(B\x8Bo\x8od\x8di\x8ie\x8es\x8s)·and·interactions·(I\x8In\x8nt\x8te\x8er\x8ra\x8ac\x8ct\x8ti\x8io\x8on\x8ns\x8s).·Clicking·at·each·of·the
416	······attribute·names·links·to·the·appropriate·section·in·the·documentation.	415	······attribute·names·links·to·the·appropriate·section·in·the·documentation.
417	Exercises	416	Exercises
418	···1.·What·is·this·code·going·to·do?	417	···1.·What·is·this·code·going·to·do?
419	······Yade·[59]:·O.bodies.append([utils.sphere((2*i,0,0),1)·for·i·in·range	418	······Yade·[59]:·O.bodies.append([utils.sphere((2*i,0,0),1)·for·i·in·range
420	······(1,20)])	419	······(1,20)])
421	······Out[59]:·[33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47~~,·48~~,	420	······Out[59]:·[32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,
422	······49,·50,·51]	421	······48,·49,·50]
423	···2.·Create·a·simple·simulation·with·cloud·of·spheres·enclosed·in·the·box	422	···2.·Create·a·simple·simulation·with·cloud·of·spheres·enclosed·in·the·box
424	······(0,0,0)·and·(1,1,1)·with·mean·radius·.1.·(hint:	423	······(0,0,0)·and·(1,1,1)·with·mean·radius·.1.·(hint:
425	······_\x8p_\x8a_\x8c_\x8k_\x8._\x8S_\x8p_\x8h_\x8e_\x8r_\x8e_\x8P_\x8a_\x8c_\x8k_\x8._\x8m_\x8a_\x8k_\x8e_\x8C_\x8l_\x8o_\x8u_\x8d)	424	······_\x8p_\x8a_\x8c_\x8k_\x8._\x8S_\x8p_\x8h_\x8e_\x8r_\x8e_\x8P_\x8a_\x8c_\x8k_\x8._\x8m_\x8a_\x8k_\x8e_\x8C_\x8l_\x8o_\x8u_\x8d)
426	···3.·Enclose·the·cloud·created·above·in·box·with·corners·(0,0,0)·and·(1,1,1);	425	···3.·Enclose·the·cloud·created·above·in·box·with·corners·(0,0,0)·and·(1,1,1);
427	······keep·the·top·of·the·box·open.·(hint:·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t_\x8B_\x8o_\x8x;·type·utils.facetBox?	426	······keep·the·top·of·the·box·open.·(hint:·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t_\x8B_\x8o_\x8x;·type·utils.facetBox?
428	······or·utils.facetBox??·to·get·help·on·the·command·line)	427	······or·utils.facetBox??·to·get·help·on·the·command·line)
429	···4.·Open·the·3D·view,·try·zooming·in/out;·position·axes·so·that·\(z\)·is	428	···4.·Open·the·3D·view,·try·zooming·in/out;·position·axes·so·that·\(z\)·is
Offset 444, 18 lines modified		Offset 443, 18 lines modified
444	···....:····NewtonIntegrator(damping=.2,label='newtonCustomLabel')······#	443	···....:····NewtonIntegrator(damping=.2,label='newtonCustomLabel')······#
445	define·a·label·newtonCustomLabel·under·which·we·can·access·this·engine·easily	444	define·a·label·newtonCustomLabel·under·which·we·can·access·this·engine·easily
446	···....:·]	445	···....:·]
447	···....:	446	···....:

448	Yade·[61]:·O.engines	447	Yade·[61]:·O.engines
449	Out[61]:	448	Out[61]:
450	[<ForceResetter·instance·at·0xd3~~0b1~~d0>,	449	[<ForceResetter·instance·at·0x303328d0>,
451	·<InsertionSortCollider·instance·at·0x~~d2f8f2~~0>,	450	·<InsertionSortCollider·instance·at·0x30142550>,
452	·<InteractionLoop·instance·at·0xd1~~6a2b~~0>,	451	·<InteractionLoop·instance·at·0x30187ad0>,
453	·<NewtonIntegrator·instance·at·0x~~a9ad0a~~0>]	452	·<NewtonIntegrator·instance·at·0x3038b6c0>]

454	Yade·[62]:·O.engines[-1]==newtonCustomLabel····#·is·it·the·same·object?	453	Yade·[62]:·O.engines[-1]==newtonCustomLabel····#·is·it·the·same·object?
455	Out[62]:·True	454	Out[62]:·True

456	Yade·[63]:·newtonCustomLabel.damping	455	Yade·[63]:·newtonCustomLabel.damping
457	Out[63]:·0.2	456	Out[63]:·0.2
458	Instead·of·typing·everything·into·the·command-line,·one·can·describe·simulation	457	Instead·of·typing·everything·into·the·command-line,·one·can·describe·simulation


Offset 269, 15 lines modified		Offset 269, 15 lines modified
269	<li><p>Set·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.material">Body.material</a>·(last-defined·material·is·used,·otherwise·a·default·material·is·created)</p></li>	269	<li><p>Set·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.material">Body.material</a>·(last-defined·material·is·used,·otherwise·a·default·material·is·created)</p></li>
270	<li><p>Set·position·and·orientation·in·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.state">Body.state</a>,·compute·mass·and·moment·of·inertia·based·on·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Material">Material</a>·and·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Shape">Shape</a></p></li>	270	<li><p>Set·position·and·orientation·in·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.state">Body.state</a>,·compute·mass·and·moment·of·inertia·based·on·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Material">Material</a>·and·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Shape">Shape</a></p></li>
271	</ol>	271	</ol>
272	<p>In·order·to·avoid·such·tasks,·shorthand·functions·are·defined·in·the·<a·class="reference·external"·href="yade.utils.html#">utils</a>·module;·to·mention·a·few·of·them,·they·are·<a·class="reference·external"·href="yade.utils.html#yade.utils.sphere">utils.sphere</a>,·<a·class="reference·external"·href="yade.utils.html#yade.utils.facet">utils.facet</a>,·<a·class="reference·external"·href="yade.utils.html#yade.utils.wall">utils.wall</a>.</p>	272	<p>In·order·to·avoid·such·tasks,·shorthand·functions·are·defined·in·the·<a·class="reference·external"·href="yade.utils.html#">utils</a>·module;·to·mention·a·few·of·them,·they·are·<a·class="reference·external"·href="yade.utils.html#yade.utils.sphere">utils.sphere</a>,·<a·class="reference·external"·href="yade.utils.html#yade.utils.facet">utils.facet</a>,·<a·class="reference·external"·href="yade.utils.html#yade.utils.wall">utils.wall</a>.</p>
273	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[8]:·</span><span·class="n">s</span><span·class="o">=</span><span·class="n">utils</span><span·class="o">.</span><span·class="n">sphere</span><span·class="p">((</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">),</span><span·class="n">radius</span><span·class="o">=</span><span·class="mi">1</span><span·class="p">)</span>····<span·class="c1">#·create·sphere·particle·centered·at·(0,0,0)·with·radius=1</span>	273	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[8]:·</span><span·class="n">s</span><span·class="o">=</span><span·class="n">utils</span><span·class="o">.</span><span·class="n">sphere</span><span·class="p">((</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">),</span><span·class="n">radius</span><span·class="o">=</span><span·class="mi">1</span><span·class="p">)</span>····<span·class="c1">#·create·sphere·particle·centered·at·(0,0,0)·with·radius=1</span>

274	<span·class="gp">Yade·[9]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">shape</span>·······················<span·class="c1">#·s.shape·describes·the·geometry·of·the·particle</span>	274	<span·class="gp">Yade·[9]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">shape</span>·······················<span·class="c1">#·s.shape·describes·the·geometry·of·the·particle</span>
275	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">9</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">Sphere</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0xd246480</span><span·class="o">></span>	275	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">9</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">Sphere</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x30236460</span><span·class="o">></span>

276	<span·class="gp">Yade·[10]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">shape</span><span·class="o">.</span><span·class="n">radius</span>················<span·class="c1">#·we·already·know·the·Sphere·class</span>	276	<span·class="gp">Yade·[10]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">shape</span><span·class="o">.</span><span·class="n">radius</span>················<span·class="c1">#·we·already·know·the·Sphere·class</span>
277	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">10</span><span·class="p">]:</span>·<span·class="mf">1.0</span>	277	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">10</span><span·class="p">]:</span>·<span·class="mf">1.0</span>

278	<span·class="gp">Yade·[11]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">state</span><span·class="o">.</span><span·class="n">mass</span><span·class="p">,</span>·<span·class="n">s</span><span·class="o">.</span><span·class="n">state</span><span·class="o">.</span><span·class="n">inertia</span>·<span·class="c1">#·inertia·is·computed·from·density·and·geometry</span>	278	<span·class="gp">Yade·[11]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">state</span><span·class="o">.</span><span·class="n">mass</span><span·class="p">,</span>·<span·class="n">s</span><span·class="o">.</span><span·class="n">state</span><span·class="o">.</span><span·class="n">inertia</span>·<span·class="c1">#·inertia·is·computed·from·density·and·geometry</span>
279	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">11</span><span·class="p">]:</span>·	279	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">11</span><span·class="p">]:</span>·
280	<span·class="go">(4188.790204786391,</span>	280	<span·class="go">(4188.790204786391,</span>
Offset 304, 20 lines modified		Offset 304, 20 lines modified
304	<span·class="gp">Yade·[16]:·</span><span·class="n">sp</span><span·class="o">=</span><span·class="n">pack</span><span·class="o">.</span><span·class="n">SpherePack</span><span·class="p">()</span>···················<span·class="c1">#·create·an·empty·cloud;·SpherePack·contains·only·geometrical·information</span>	304	<span·class="gp">Yade·[16]:·</span><span·class="n">sp</span><span·class="o">=</span><span·class="n">pack</span><span·class="o">.</span><span·class="n">SpherePack</span><span·class="p">()</span>···················<span·class="c1">#·create·an·empty·cloud;·SpherePack·contains·only·geometrical·information</span>

305	<span·class="gp">Yade·[17]:·</span><span·class="n">sp</span><span·class="o">.</span><span·class="n">makeCloud</span><span·class="p">((</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">),(</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">),</span><span·class="n">rMean</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">)</span>·<span·class="c1">#·put·spheres·with·defined·radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)</span>	305	<span·class="gp">Yade·[17]:·</span><span·class="n">sp</span><span·class="o">.</span><span·class="n">makeCloud</span><span·class="p">((</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">),(</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">),</span><span·class="n">rMean</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">)</span>·<span·class="c1">#·put·spheres·with·defined·radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)</span>
306	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">17</span><span·class="p">]:</span>·<span·class="mi">6</span>	306	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">17</span><span·class="p">]:</span>·<span·class="mi">6</span>

307	<span·class="gp">Yade·[18]:·</span><span·class="k">for</span>·<span·class="n">c</span><span·class="p">,</span><span·class="n">r</span>·<span·class="ow">in</span>·<span·class="n">sp</span><span·class="p">:</span>·<span·class="nb">print</span><span·class="p">(</span><span·class="n">c</span><span·class="p">,</span><span·class="n">r</span><span·class="p">)</span>···············<span·class="c1">#·print·center·and·radius·of·all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)</span>	307	<span·class="gp">Yade·[18]:·</span><span·class="k">for</span>·<span·class="n">c</span><span·class="p">,</span><span·class="n">r</span>·<span·class="ow">in</span>·<span·class="n">sp</span><span·class="p">:</span>·<span·class="nb">print</span><span·class="p">(</span><span·class="n">c</span><span·class="p">,</span><span·class="n">r</span><span·class="p">)</span>···············<span·class="c1">#·print·center·and·radius·of·all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)</span>
308	<span·class="gp">···....:</span>·	308	<span·class="gp">···....:</span>·
309	<span·class="go">Vector3(1.537432218195293965,1.618107258101272539,1.429754257182672461)·0.2</span>
310	<span·class="go">Vector3(1.685711595483621261,1.248283117827507116,1.552565522919099772)·0.2</span>
311	<span·class="go">Vector3(1.248046324534804796,1.673821592984891193,1.718526696784186125)·0.2</span>
312	<span·class="go">Vector3(1.275871346169903831,1.229763450012622883,1.267194111544125423)·0.2</span>
313	<span·class="go">Vector3(1.261469173715590752,1.230493890997059525,1.711917767606801144)·0.2</span>
314	<span·class="go">Vector3(1.~~72916~~36156359~~26909~~,1.~~77718~~83~~50033~~312~~991~~,1.~~789~~6~~435489~~3~~937~~4051)·0.2</span>	309	<span·class="go">Vector3(1.361508334591945868,1.40226683972563837,1.631689315636954074)·0.2</span>
		310	<span·class="go">Vector3(1.758022354072403592,1.202834768163377088,1.347916807364280434)·0.2</span>
		311	<span·class="go">Vector3(1.725234328358626668,1.587670555913178738,1.243617007200337632)·0.2</span>
		312	<span·class="go">Vector3(1.767691077513335429,1.676457162572756454,1.685443297600340395)·0.2</span>
		313	<span·class="go">Vector3(1.267965289281598906,1.281453294610026994,1.247540734748637137)·0.2</span>
		314	<span·class="go">Vector3(1.2680821895364911,1.786647569015489934,1.525647421206203225)·0.2</span>

315	<span·class="gp">Yade·[19]:·</span><span·class="n">sp</span><span·class="o">.</span><span·class="n">toSimulation</span><span·class="p">()</span>······················<span·class="c1">#·create·particles·and·add·them·to·the·simulation</span>	315	<span·class="gp">Yade·[19]:·</span><span·class="n">sp</span><span·class="o">.</span><span·class="n">toSimulation</span><span·class="p">()</span>······················<span·class="c1">#·create·particles·and·add·them·to·the·simulation</span>
316	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">19</span><span·class="p">]:</span>·<span·class="p">[</span><span·class="mi">1</span><span·class="p">,</span>·<span·class="mi">2</span><span·class="p">,</span>·<span·class="mi">3</span><span·class="p">,</span>·<span·class="mi">4</span><span·class="p">,</span>·<span·class="mi">5</span><span·class="p">,</span>·<span·class="mi">6</span><span·class="p">]</span>	316	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">19</span><span·class="p">]:</span>·<span·class="p">[</span><span·class="mi">1</span><span·class="p">,</span>·<span·class="mi">2</span><span·class="p">,</span>·<span·class="mi">3</span><span·class="p">,</span>·<span·class="mi">4</span><span·class="p">,</span>·<span·class="mi">5</span><span·class="p">,</span>·<span·class="mi">6</span><span·class="p">]</span>
317	</pre></div>	317	</pre></div>
318	</div>	318	</div>
319	</section>	319	</section>
320	<section·id="boundaries">	320	<section·id="boundaries">
Offset 378, 18 lines modified		Offset 378, 18 lines modified
378	<span·class="gp">···....:</span>····<span·class="p">),</span>	378	<span·class="gp">···....:</span>····<span·class="p">),</span>
379	<span·class="gp">···....:</span>····<span·class="n">NewtonIntegrator</span><span·class="p">(</span><span·class="n">damping</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">,</span><span·class="n">label</span><span·class="o">=</span><span·class="s1">'newtonCustomLabel'</span><span·class="p">)</span>······<span·class="c1">#·define·a·label·newtonCustomLabel·under·which·we·can·access·this·engine·easily</span>	379	<span·class="gp">···....:</span>····<span·class="n">NewtonIntegrator</span><span·class="p">(</span><span·class="n">damping</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">,</span><span·class="n">label</span><span·class="o">=</span><span·class="s1">'newtonCustomLabel'</span><span·class="p">)</span>······<span·class="c1">#·define·a·label·newtonCustomLabel·under·which·we·can·access·this·engine·easily</span>
380	<span·class="gp">···....:</span>·<span·class="p">]</span>	380	<span·class="gp">···....:</span>·<span·class="p">]</span>
381	<span·class="gp">···....:</span>·	381	<span·class="gp">···....:</span>·

382	<span·class="gp">Yade·[25]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">engines</span>	382	<span·class="gp">Yade·[25]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">engines</span>
383	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">25</span><span·class="p">]:</span>·	383	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">25</span><span·class="p">]:</span>·
384	<span·class="go">[<ForceResetter·instance·at·0x~~d3def9~~0>,</span>	384	<span·class="go">[<ForceResetter·instance·at·0x30544c70>,</span>
385	<span·class="go">·<InsertionSortCollider·instance·at·0xc0ab390>,</span>	385	<span·class="go">·<InsertionSortCollider·instance·at·0x2fa06990>,</span>
386	<span·class="go">·<InteractionLoop·instance·at·0xd2~~f047~~0>,</span>	386	<span·class="go">·<InteractionLoop·instance·at·0x302a4db0>,</span>
387	<span·class="go">·<NewtonIntegrator·instance·at·0x~~bee2~~410>]</span>	387	<span·class="go">·<NewtonIntegrator·instance·at·0x2f0d4fb0>]</span>

388	<span·class="gp">Yade·[26]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">engines</span><span·class="p">[</span><span·class="o">-</span><span·class="mi">1</span><span·class="p">]</span><span·class="o">==</span><span·class="n">newtonCustomLabel</span>····<span·class="c1">#·is·it·the·same·object?</span>	388	<span·class="gp">Yade·[26]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">engines</span><span·class="p">[</span><span·class="o">-</span><span·class="mi">1</span><span·class="p">]</span><span·class="o">==</span><span·class="n">newtonCustomLabel</span>····<span·class="c1">#·is·it·the·same·object?</span>
389	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">26</span><span·class="p">]:</span>·<span·class="kc">True</span>	389	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">26</span><span·class="p">]:</span>·<span·class="kc">True</span>

390	<span·class="gp">Yade·[27]:·</span><span·class="n">newtonCustomLabel</span><span·class="o">.</span><span·class="n">damping</span>	390	<span·class="gp">Yade·[27]:·</span><span·class="n">newtonCustomLabel</span><span·class="o">.</span><span·class="n">damping</span>
391	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">27</span><span·class="p">]:</span>·<span·class="mf">0.2</span>	391	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">27</span><span·class="p">]:</span>·<span·class="mf">0.2</span>
392	</pre></div>	392	</pre></div>


Offset 132, 15 lines modified		Offset 132, 15 lines modified
132	module;·to·mention·a·few·of·them,·they·are·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e,·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t,	132	module;·to·mention·a·few·of·them,·they·are·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e,·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t,
133	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l.	133	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l.
134	Yade·[8]:·s=utils.sphere((0,0,0),radius=1)····#·create·sphere·particle·centered	134	Yade·[8]:·s=utils.sphere((0,0,0),radius=1)····#·create·sphere·particle·centered
135	at·(0,0,0)·with·radius=1	135	at·(0,0,0)·with·radius=1

136	Yade·[9]:·s.shape·······················#·s.shape·describes·the·geometry·of·the	136	Yade·[9]:·s.shape·······················#·s.shape·describes·the·geometry·of·the
137	particle	137	particle
138	Out[9]:·<Sphere·instance·at·0xd246480>	138	Out[9]:·<Sphere·instance·at·0x30236460>

139	Yade·[10]:·s.shape.radius················#·we·already·know·the·Sphere·class	139	Yade·[10]:·s.shape.radius················#·we·already·know·the·Sphere·class
140	Out[10]:·1.0	140	Out[10]:·1.0

141	Yade·[11]:·s.state.mass,·s.state.inertia·#·inertia·is·computed·from·density·and	141	Yade·[11]:·s.state.mass,·s.state.inertia·#·inertia·is·computed·from·density·and
142	geometry	142	geometry
143	Out[11]:	143	Out[11]:
Offset 172, 20 lines modified		Offset 172, 20 lines modified
172	Yade·[17]:·sp.makeCloud((1,1,1),(2,2,2),rMean=.2)·#·put·spheres·with·defined	172	Yade·[17]:·sp.makeCloud((1,1,1),(2,2,2),rMean=.2)·#·put·spheres·with·defined
173	radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)	173	radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)
174	Out[17]:·6	174	Out[17]:·6

175	Yade·[18]:·for·c,r·in·sp:·print(c,r)···············#·print·center·and·radius·of	175	Yade·[18]:·for·c,r·in·sp:·print(c,r)···············#·print·center·and·radius·of
176	all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)	176	all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)
177	···....:	177	···....:
178	Vector3(1.537432218195293965,1.618107258101272539,1.429754257182672461)·0.2
179	Vector3(1.685711595483621261,1.248283117827507116,1.552565522919099772)·0.2
180	Vector3(1.248046324534804796,1.673821592984891193,1.718526696784186125)·0.2
181	Vector3(1.275871346169903831,1.229763450012622883,1.267194111544125423)·0.2
182	Vector3(1.261469173715590752,1.230493890997059525,1.711917767606801144)·0.2
183	Vector3(1.~~72916~~36156359~~26909~~,1.~~77718~~83~~50033~~312~~991~~,1.~~789~~6~~435489~~3~~937~~4051)·0.2	178	Vector3(1.361508334591945868,1.40226683972563837,1.631689315636954074)·0.2
		179	Vector3(1.758022354072403592,1.202834768163377088,1.347916807364280434)·0.2
		180	Vector3(1.725234328358626668,1.587670555913178738,1.243617007200337632)·0.2
		181	Vector3(1.767691077513335429,1.676457162572756454,1.685443297600340395)·0.2
		182	Vector3(1.267965289281598906,1.281453294610026994,1.247540734748637137)·0.2
		183	Vector3(1.2680821895364911,1.786647569015489934,1.525647421206203225)·0.2

184	Yade·[19]:·sp.toSimulation()······················#·create·particles·and·add	184	Yade·[19]:·sp.toSimulation()······················#·create·particles·and·add
185	them·to·the·simulation	185	them·to·the·simulation
186	Out[19]:·[1,·2,·3,·4,·5,·6]	186	Out[19]:·[1,·2,·3,·4,·5,·6]
187	\x8\x8\x8\x8\x8·B\x8Bo\x8ou\x8un\x8nd\x8da\x8ar\x8ri\x8ie\x8es\x8s_\x8?\x8¶·\x8\x8\x8\x8\x8	187	\x8\x8\x8\x8\x8·B\x8Bo\x8ou\x8un\x8nd\x8da\x8ar\x8ri\x8ie\x8es\x8s_\x8?\x8¶·\x8\x8\x8\x8\x8
188	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t·(triangle·_\x8F_\x8a_\x8c_\x8e_\x8t)·and·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l·(infinite·axes-aligned·plane·_\x8W_\x8a_\x8l_\x8l)	188	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t·(triangle·_\x8F_\x8a_\x8c_\x8e_\x8t)·and·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l·(infinite·axes-aligned·plane·_\x8W_\x8a_\x8l_\x8l)
189	geometries·are·typically·used·to·define·boundaries.·For·instance,·a·“floor”·for	189	geometries·are·typically·used·to·define·boundaries.·For·instance,·a·“floor”·for
Offset 262, 18 lines modified		Offset 262, 18 lines modified
262	···....:····NewtonIntegrator(damping=.2,label='newtonCustomLabel')······#	262	···....:····NewtonIntegrator(damping=.2,label='newtonCustomLabel')······#
263	define·a·label·newtonCustomLabel·under·which·we·can·access·this·engine·easily	263	define·a·label·newtonCustomLabel·under·which·we·can·access·this·engine·easily
264	···....:·]	264	···....:·]
265	···....:	265	···....:

266	Yade·[25]:·O.engines	266	Yade·[25]:·O.engines
267	Out[25]:	267	Out[25]:
268	[<ForceResetter·instance·at·0x~~d3def9~~0>,	268	[<ForceResetter·instance·at·0x30544c70>,
269	·<InsertionSortCollider·instance·at·0xc0ab390>,	269	·<InsertionSortCollider·instance·at·0x2fa06990>,
270	·<InteractionLoop·instance·at·0xd2~~f047~~0>,	270	·<InteractionLoop·instance·at·0x302a4db0>,
271	·<NewtonIntegrator·instance·at·0x~~bee2~~410>]	271	·<NewtonIntegrator·instance·at·0x2f0d4fb0>]

272	Yade·[26]:·O.engines[-1]==newtonCustomLabel····#·is·it·the·same·object?	272	Yade·[26]:·O.engines[-1]==newtonCustomLabel····#·is·it·the·same·object?
273	Out[26]:·True	273	Out[26]:·True

274	Yade·[27]:·newtonCustomLabel.damping	274	Yade·[27]:·newtonCustomLabel.damping
275	Out[27]:·0.2	275	Out[27]:·0.2
276	Instead·of·typing·everything·into·the·command-line,·one·can·describe·simulation	276	Instead·of·typing·everything·into·the·command-line,·one·can·describe·simulation


Offset 170, 15 lines modified		Offset 170, 15 lines modified
170	<p>If·no·<a·class="reference·internal"·href="yade.wrapper.html#inheritancegraphmaterial"><span·class="std·std-ref">Material</span></a>·is·specified·when·calling·<a·class="reference·external"·href="yade.utils.html#yade.utils.sphere">sphere</a>,·the·<em>last</em>·defined·material·is·used;·that·is·a·convenient·default.·If·no·material·is·defined·yet·(hence·there·is·no·last·material),·a·default·material·will·be·created:·FrictMat(density=1e3,young=1e7,poisson=.3,frictionAngle=.5).·This·should·not·happen·for·serious·simulations,·but·is·handy·in·simple·scripts,·where·exact·material·properties·are·more·or·less·irrelevant.</p>	170	<p>If·no·<a·class="reference·internal"·href="yade.wrapper.html#inheritancegraphmaterial"><span·class="std·std-ref">Material</span></a>·is·specified·when·calling·<a·class="reference·external"·href="yade.utils.html#yade.utils.sphere">sphere</a>,·the·<em>last</em>·defined·material·is·used;·that·is·a·convenient·default.·If·no·material·is·defined·yet·(hence·there·is·no·last·material),·a·default·material·will·be·created:·FrictMat(density=1e3,young=1e7,poisson=.3,frictionAngle=.5).·This·should·not·happen·for·serious·simulations,·but·is·handy·in·simple·scripts,·where·exact·material·properties·are·more·or·less·irrelevant.</p>
171	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[1]:·</span><span·class="nb">len</span><span·class="p">(</span><span·class="n">O</span><span·class="o">.</span><span·class="n">materials</span><span·class="p">)</span>	171	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[1]:·</span><span·class="nb">len</span><span·class="p">(</span><span·class="n">O</span><span·class="o">.</span><span·class="n">materials</span><span·class="p">)</span>
172	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">1</span><span·class="p">]:</span>·<span·class="mi">0</span>	172	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">1</span><span·class="p">]:</span>·<span·class="mi">0</span>

173	<span·class="gp">Yade·[2]:·</span><span·class="n">idConcrete</span><span·class="o">=</span><span·class="n">O</span><span·class="o">.</span><span·class="n">materials</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">FrictMat</span><span·class="p">(</span><span·class="n">young</span><span·class="o">=</span><span·class="mf">30e9</span><span·class="p">,</span><span·class="n">poisson</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">,</span><span·class="n">frictionAngle</span><span·class="o">=</span><span·class="mf">.6</span><span·class="p">,</span><span·class="n">label</span><span·class="o">=</span><span·class="s2">"concrete"</span><span·class="p">))</span>	173	<span·class="gp">Yade·[2]:·</span><span·class="n">idConcrete</span><span·class="o">=</span><span·class="n">O</span><span·class="o">.</span><span·class="n">materials</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">FrictMat</span><span·class="p">(</span><span·class="n">young</span><span·class="o">=</span><span·class="mf">30e9</span><span·class="p">,</span><span·class="n">poisson</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">,</span><span·class="n">frictionAngle</span><span·class="o">=</span><span·class="mf">.6</span><span·class="p">,</span><span·class="n">label</span><span·class="o">=</span><span·class="s2">"concrete"</span><span·class="p">))</span>

174	<span·class="gp">Yade·[3]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">materials</span><span·class="p">[</span><span·class="n">idConcrete</span><span·class="p">]</span>	174	<span·class="gp">Yade·[3]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">materials</span><span·class="p">[</span><span·class="n">idConcrete</span><span·class="p">]</span>
175	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">3</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">FrictMat</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x~~d2ecfa~~0</span><span·class="o">></span>	175	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">3</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">FrictMat</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x303b6420</span><span·class="o">></span>

176	<span·class="c">#·uses·the·last·defined·material</span>	176	<span·class="c">#·uses·the·last·defined·material</span>
177	<span·class="gp">Yade·[4]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">sphere</span><span·class="p">(</span><span·class="n">center</span><span·class="o">=</span><span·class="p">(</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">),</span><span·class="n">radius</span><span·class="o">=</span><span·class="mi">1</span><span·class="p">))</span>	177	<span·class="gp">Yade·[4]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">sphere</span><span·class="p">(</span><span·class="n">center</span><span·class="o">=</span><span·class="p">(</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">),</span><span·class="n">radius</span><span·class="o">=</span><span·class="mi">1</span><span·class="p">))</span>
178	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">4</span><span·class="p">]:</span>·<span·class="mi">0</span>	178	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">4</span><span·class="p">]:</span>·<span·class="mi">0</span>

179	<span·class="c">#·material·given·by·id</span>	179	<span·class="c">#·material·given·by·id</span>
180	<span·class="gp">Yade·[5]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">sphere</span><span·class="p">((</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">),</span><span·class="mi">1</span><span·class="p">,</span><span·class="n">material</span><span·class="o">=</span><span·class="n">idConcrete</span><span·class="p">))</span>	180	<span·class="gp">Yade·[5]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">sphere</span><span·class="p">((</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">),</span><span·class="mi">1</span><span·class="p">,</span><span·class="n">material</span><span·class="o">=</span><span·class="n">idConcrete</span><span·class="p">))</span>
Offset 605, 15 lines modified		Offset 605, 15 lines modified
605	<span·class="gp">···....:</span>·<span·class="p">]</span>	605	<span·class="gp">···....:</span>·<span·class="p">]</span>
606	<span·class="gp">···....:</span>·	606	<span·class="gp">···....:</span>·

607	<span·class="gp">Yade·[29]:·</span><span·class="n">i</span><span·class="o">=</span><span·class="n">createInteraction</span><span·class="p">(</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">)</span>	607	<span·class="gp">Yade·[29]:·</span><span·class="n">i</span><span·class="o">=</span><span·class="n">createInteraction</span><span·class="p">(</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">)</span>

608	<span·class="c">#·created·by·functors·in·InteractionLoop</span>	608	<span·class="c">#·created·by·functors·in·InteractionLoop</span>
609	<span·class="gp">Yade·[30]:·</span><span·class="n">i</span><span·class="o">.</span><span·class="n">geom</span><span·class="p">,</span>·<span·class="n">i</span><span·class="o">.</span><span·class="n">phys</span>	609	<span·class="gp">Yade·[30]:·</span><span·class="n">i</span><span·class="o">.</span><span·class="n">geom</span><span·class="p">,</span>·<span·class="n">i</span><span·class="o">.</span><span·class="n">phys</span>
610	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">30</span><span·class="p">]:</span>·<span·class="p">(</span><span·class="o"><</span><span·class="n">ScGeom</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x~~d11cfb~~0</span><span·class="o">></span><span·class="p">,</span>·<span·class="o"><</span><span·class="n">FrictPhys</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0xd1~~84c~~c0</span><span·class="o">></span><span·class="p">)</span>	610	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">30</span><span·class="p">]:</span>·<span·class="p">(</span><span·class="o"><</span><span·class="n">ScGeom</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x303bee80</span><span·class="o">></span><span·class="p">,</span>·<span·class="o"><</span><span·class="n">FrictPhys</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x3012bac0</span><span·class="o">></span><span·class="p">)</span>
611	</pre></div>	611	</pre></div>
612	</div>	612	</div>
613	<p>This·method·will·be·rather·slow·if·many·interactions·are·to·be·created·(the·functor·lookup·will·be·repeated·for·each·of·them).·In·such·case,·ask·on·<a·class="reference·external"·href="mailto:yade-dev%40lists.launchpad.net">yade-dev<span>@</span>lists<span>.</span>launchpad<span>.</span>net</a>·to·have·the·<a·class="reference·external"·href="yade.utils.html#yade._utils.createInteraction">createInteraction</a>·function·accept·list·of·pairs·id’s·as·well.</p>	613	<p>This·method·will·be·rather·slow·if·many·interactions·are·to·be·created·(the·functor·lookup·will·be·repeated·for·each·of·them).·In·such·case,·ask·on·<a·class="reference·external"·href="mailto:yade-dev%40lists.launchpad.net">yade-dev<span>@</span>lists<span>.</span>launchpad<span>.</span>net</a>·to·have·the·<a·class="reference·external"·href="yade.utils.html#yade._utils.createInteraction">createInteraction</a>·function·accept·list·of·pairs·id’s·as·well.</p>
614	</section>	614	</section>
615	</section>	615	</section>
616	<section·id="base-engines">	616	<section·id="base-engines">
617	<h3>Base·engines<a·class="headerlink"·href="#base-engines"·title="Link·to·this·heading">¶</a></h3>	617	<h3>Base·engines<a·class="headerlink"·href="#base-engines"·title="Link·to·this·heading">¶</a></h3>
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904	<ul·class="simple">	904	<ul·class="simple">
905	<li><p><code·class="docutils·literal·notranslate"><span·class="pre">O.tags</span></code>·is·<em>saved·and·loaded·with·simulation</em>;</p></li>	905	<li><p><code·class="docutils·literal·notranslate"><span·class="pre">O.tags</span></code>·is·<em>saved·and·loaded·with·simulation</em>;</p></li>
906	<li><p><code·class="docutils·literal·notranslate"><span·class="pre">O.tags</span></code>·has·some·values·pre-initialized.</p></li>	906	<li><p><code·class="docutils·literal·notranslate"><span·class="pre">O.tags</span></code>·has·some·values·pre-initialized.</p></li>
907	</ul>	907	</ul>
908	<p>After·Yade·startup,·<code·class="docutils·literal·notranslate"><span·class="pre">O.tags</span></code>·contains·the·following:</p>	908	<p>After·Yade·startup,·<code·class="docutils·literal·notranslate"><span·class="pre">O.tags</span></code>·contains·the·following:</p>
909	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[45]:·</span><span·class="nb">dict</span><span·class="p">(</span><span·class="n">O</span><span·class="o">.</span><span·class="n">tags</span><span·class="p">)</span>·<span·class="c1">#·convert·to·real·dictionary</span>	909	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[45]:·</span><span·class="nb">dict</span><span·class="p">(</span><span·class="n">O</span><span·class="o">.</span><span·class="n">tags</span><span·class="p">)</span>·<span·class="c1">#·convert·to·real·dictionary</span>
910	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">45</span><span·class="p">]:</span>·	910	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">45</span><span·class="p">]:</span>·
911	<span·class="go">{'author':·'~(pbuilder1@i~~nfom02~~-~~amd64~~)',</span>	911	<span·class="go">{'author':·'second~user~(pbuilder2@i-capture-the-hostname)',</span>
912	<span·class="go">·'isoTime':·'20251216T~~091639~~',</span>	912	<span·class="go">·'isoTime':·'20241114T124025',</span>
913	<span·class="go">·'id':·'20251216T~~091639~~p~~3949071~~',</span>	913	<span·class="go">·'id':·'20241114T124025p4030302',</span>
914	<span·class="go">·'d.id':·'20251216T~~091639~~p~~3949071~~',</span>	914	<span·class="go">·'d.id':·'20241114T124025p4030302',</span>
915	<span·class="go">·'id.d':·'20251216T~~091639~~p~~3949071~~'}</span>	915	<span·class="go">·'id.d':·'20241114T124025p4030302'}</span>
916	</pre></div>	916	</pre></div>
917	</div>	917	</div>
918	<dl·class="simple">	918	<dl·class="simple">
919	<dt>author</dt><dd><p>Real·name,·username·and·machine·as·obtained·from·your·system·at·simulation·creation</p>	919	<dt>author</dt><dd><p>Real·name,·username·and·machine·as·obtained·from·your·system·at·simulation·creation</p>
920	</dd>	920	</dd>
921	<dt>id</dt><dd><p>Unique·identifier·of·this·Yade·instance·(or·of·the·instance·which·created·a·loaded·simulation).·It·is·composed·of·date,·time·and·process·number.·Useful·if·you·run·simulations·in·parallel·and·want·to·avoid·overwriting·each·other’s·outputs;·embed·<code·class="docutils·literal·notranslate"><span·class="pre">O.tags['id']</span></code>·in·output·filenames·(either·as·directory·name,·or·as·part·of·the·file’s·name·itself)·to·avoid·it.·This·is·explained·in·<a·class="reference·internal"·href="#batch-output-separate"><span·class="std·std-ref">Separating·output·files·from·jobs</span></a>·in·detail.</p>	921	<dt>id</dt><dd><p>Unique·identifier·of·this·Yade·instance·(or·of·the·instance·which·created·a·loaded·simulation).·It·is·composed·of·date,·time·and·process·number.·Useful·if·you·run·simulations·in·parallel·and·want·to·avoid·overwriting·each·other’s·outputs;·embed·<code·class="docutils·literal·notranslate"><span·class="pre">O.tags['id']</span></code>·in·output·filenames·(either·as·directory·name,·or·as·part·of·the·file’s·name·itself)·to·avoid·it.·This·is·explained·in·<a·class="reference·internal"·href="#batch-output-separate"><span·class="std·std-ref">Separating·output·files·from·jobs</span></a>·in·detail.</p>
922	</dd>	922	</dd>


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356	</div>	356	</div>
357	<p>Normal·simulations,·however,·are·run·continuously.·Starting/stopping·the·loop·is·done·by·<code·class="docutils·literal·notranslate"><span·class="pre">O.run()</span></code>·and·<code·class="docutils·literal·notranslate"><span·class="pre">O.pause()</span></code>;·note·that·<code·class="docutils·literal·notranslate"><span·class="pre">O.run()</span></code>·returns·control·to·Python·and·the·simulation·runs·in·background;·if·you·want·to·wait·for·it·to·finish,·use·<code·class="docutils·literal·notranslate"><span·class="pre">O.wait()</span></code>.·Fixed·number·of·steps·can·be·run·with·<code·class="docutils·literal·notranslate"><span·class="pre">O.run(1000)</span></code>,·<code·class="docutils·literal·notranslate"><span·class="pre">O.run(1000,True)</span></code>·will·run·and·wait.·To·stop·at·absolute·step·number,·<code·class="docutils·literal·notranslate"><span·class="pre">O.stopAtIter</span></code>·can·be·set·and·<code·class="docutils·literal·notranslate"><span·class="pre">O.run()</span></code>·called·normally.</p>	357	<p>Normal·simulations,·however,·are·run·continuously.·Starting/stopping·the·loop·is·done·by·<code·class="docutils·literal·notranslate"><span·class="pre">O.run()</span></code>·and·<code·class="docutils·literal·notranslate"><span·class="pre">O.pause()</span></code>;·note·that·<code·class="docutils·literal·notranslate"><span·class="pre">O.run()</span></code>·returns·control·to·Python·and·the·simulation·runs·in·background;·if·you·want·to·wait·for·it·to·finish,·use·<code·class="docutils·literal·notranslate"><span·class="pre">O.wait()</span></code>.·Fixed·number·of·steps·can·be·run·with·<code·class="docutils·literal·notranslate"><span·class="pre">O.run(1000)</span></code>,·<code·class="docutils·literal·notranslate"><span·class="pre">O.run(1000,True)</span></code>·will·run·and·wait.·To·stop·at·absolute·step·number,·<code·class="docutils·literal·notranslate"><span·class="pre">O.stopAtIter</span></code>·can·be·set·and·<code·class="docutils·literal·notranslate"><span·class="pre">O.run()</span></code>·called·normally.</p>
358	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[12]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">run</span><span·class="p">()</span>	358	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[12]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">run</span><span·class="p">()</span>

359	<span·class="gp">Yade·[13]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">pause</span><span·class="p">()</span>	359	<span·class="gp">Yade·[13]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">pause</span><span·class="p">()</span>

360	<span·class="gp">Yade·[14]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">iter</span>	360	<span·class="gp">Yade·[14]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">iter</span>
361	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">14</span><span·class="p">]:</span>·<span·class="mi">~~1918~~</span>	361	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">14</span><span·class="p">]:</span>·<span·class="mi">3479</span>

362	<span·class="gp">Yade·[15]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">run</span><span·class="p">(</span><span·class="mi">100000</span><span·class="p">,</span><span·class="kc">True</span><span·class="p">)</span>	362	<span·class="gp">Yade·[15]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">run</span><span·class="p">(</span><span·class="mi">100000</span><span·class="p">,</span><span·class="kc">True</span><span·class="p">)</span>

363	<span·class="gp">Yade·[16]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">iter</span>	363	<span·class="gp">Yade·[16]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">iter</span>
364	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">16</span><span·class="p">]:</span>·<span·class="mi">10~~1918~~</span>	364	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">16</span><span·class="p">]:</span>·<span·class="mi">103479</span>

365	<span·class="gp">Yade·[17]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">stopAtIter</span><span·class="o">=</span><span·class="mi">500000</span>	365	<span·class="gp">Yade·[17]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">stopAtIter</span><span·class="o">=</span><span·class="mi">500000</span>

366	<span·class="gp">Yade·[18]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">run</span><span·class="p">()</span>	366	<span·class="gp">Yade·[18]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">run</span><span·class="p">()</span>

367	<span·class="gp">Yade·[19]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">wait</span><span·class="p">()</span>	367	<span·class="gp">Yade·[19]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">wait</span><span·class="p">()</span>

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433	<h2>Architecture·overview<a·class="headerlink"·href="#architecture-overview"·title="Link·to·this·heading">¶</a></h2>	433	<h2>Architecture·overview<a·class="headerlink"·href="#architecture-overview"·title="Link·to·this·heading">¶</a></h2>
434	<p>In·the·following,·a·high-level·overview·of·Yade·architecture·will·be·given.·As·many·of·the·features·are·directly·represented·in·simulation·scripts,·which·are·written·in·Python,·being·familiar·with·this·language·will·help·you·follow·the·examples.·For·the·rest,·this·knowledge·is·not·strictly·necessary·and·you·can·ignore·code·examples.</p>	434	<p>In·the·following,·a·high-level·overview·of·Yade·architecture·will·be·given.·As·many·of·the·features·are·directly·represented·in·simulation·scripts,·which·are·written·in·Python,·being·familiar·with·this·language·will·help·you·follow·the·examples.·For·the·rest,·this·knowledge·is·not·strictly·necessary·and·you·can·ignore·code·examples.</p>
435	<section·id="data-and-functions">	435	<section·id="data-and-functions">
436	<h3>Data·and·functions<a·class="headerlink"·href="#data-and-functions"·title="Link·to·this·heading">¶</a></h3>	436	<h3>Data·and·functions<a·class="headerlink"·href="#data-and-functions"·title="Link·to·this·heading">¶</a></h3>
437	<p>To·assure·flexibility·of·software·design,·yade·makes·clear·distinction·of·2·families·of·classes:·<em>data</em>·components·and·<em>functional</em>·components.·The·former·only·store·data·without·providing·functionality,·while·the·latter·define·functions·operating·on·the·data.·In·programming,·this·is·known·as·<em>visitor</em>·pattern·(as·functional·components·“visit”·the·data,·without·being·bound·to·them·explicitly).</p>	437	<p>To·assure·flexibility·of·software·design,·yade·makes·clear·distinction·of·2·families·of·classes:·<em>data</em>·components·and·<em>functional</em>·components.·The·former·only·store·data·without·providing·functionality,·while·the·latter·define·functions·operating·on·the·data.·In·programming,·this·is·known·as·<em>visitor</em>·pattern·(as·functional·components·“visit”·the·data,·without·being·bound·to·them·explicitly).</p>
438	<p>Entire·simulation,·i.e.·both·data·and·functions,·are·stored·in·a·single·<code·class="docutils·literal·notranslate"><span·class="pre">Scene</span></code>·object.·It·is·accessible·through·the·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Omega">Omega</a>·class·in·python·(a·singleton),·which·is·by·default·stored·in·the·<code·class="docutils·literal·notranslate"><span·class="pre">O</span></code>·global·variable:</p>	438	<p>Entire·simulation,·i.e.·both·data·and·functions,·are·stored·in·a·single·<code·class="docutils·literal·notranslate"><span·class="pre">Scene</span></code>·object.·It·is·accessible·through·the·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Omega">Omega</a>·class·in·python·(a·singleton),·which·is·by·default·stored·in·the·<code·class="docutils·literal·notranslate"><span·class="pre">O</span></code>·global·variable:</p>
439	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[28]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span>·······<span·class="c1">#·some·data·components</span>	439	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[28]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span>·······<span·class="c1">#·some·data·components</span>
440	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">28</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">yade</span><span·class="o">.</span><span·class="n">wrapper</span><span·class="o">.</span><span·class="n">BodyContainer</span>·<span·class="n">at</span>·<span·class="mh">0x7fa5fc6cc2e0</span><span·class="o">></span>	440	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">28</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">yade</span><span·class="o">.</span><span·class="n">wrapper</span><span·class="o">.</span><span·class="n">BodyContainer</span>·<span·class="n">at</span>·<span·class="mh">0x7f5d66f042e0</span><span·class="o">></span>

441	<span·class="gp">Yade·[29]:·</span><span·class="nb">len</span><span·class="p">(</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="p">)</span>··<span·class="c1">#·there·are·no·bodies·as·of·yet</span>	441	<span·class="gp">Yade·[29]:·</span><span·class="nb">len</span><span·class="p">(</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="p">)</span>··<span·class="c1">#·there·are·no·bodies·as·of·yet</span>
442	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">29</span><span·class="p">]:</span>·<span·class="mi">0</span>	442	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">29</span><span·class="p">]:</span>·<span·class="mi">0</span>

443	<span·class="gp">Yade·[30]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">engines</span>······<span·class="c1">#·functional·components,·empty·at·the·moment</span>	443	<span·class="gp">Yade·[30]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">engines</span>······<span·class="c1">#·functional·components,·empty·at·the·moment</span>
444	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">30</span><span·class="p">]:</span>·<span·class="p">[]</span>	444	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">30</span><span·class="p">]:</span>·<span·class="p">[]</span>
445	</pre></div>	445	</pre></div>
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472	</figure>	472	</figure>


Offset 1264, 19 lines modified		Offset 1264, 19 lines modified
1264	<span·class="w">»»»»</span><span·class="nt"><wire></span>0<span·class="nt"></wire></span>	1264	<span·class="w">»»»»</span><span·class="nt"><wire></span>0<span·class="nt"></wire></span>
1265	<span·class="w">»»»»</span><span·class="nt"><highlight></span>0<span·class="nt"></highlight></span>	1265	<span·class="w">»»»»</span><span·class="nt"><highlight></span>0<span·class="nt"></highlight></span>
1266	<span·class="w">»»»</span><span·class="nt"></px></span>	1266	<span·class="w">»»»</span><span·class="nt"></px></span>
1267	<span·class="w">»»</span><span·class="nt"></subD></span>	1267	<span·class="w">»»</span><span·class="nt"></subD></span>
1268	<span·class="w">»»</span><span·class="nt"><tags</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"6"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="nt">></span>	1268	<span·class="w">»»</span><span·class="nt"><tags</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"6"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="nt">></span>
1269	<span·class="w">»»»</span><span·class="nt"><count></span>5<span·class="nt"></count></span>	1269	<span·class="w">»»»</span><span·class="nt"><count></span>5<span·class="nt"></count></span>
1270	<span·class="w">»»»</span><span·class="nt"><item_version></span>0<span·class="nt"></item_version></span>	1270	<span·class="w">»»»</span><span·class="nt"><item_version></span>0<span·class="nt"></item_version></span>
1271	<span·class="w">»»»</span><span·class="nt"><item></span>author=~(pbuilder1@i~~nfom02~~-~~amd64~~)<span·class="nt"></item></span>	1271	<span·class="w">»»»</span><span·class="nt"><item></span>author=second~user~(pbuilder2@i-capture-the-hostname)<span·class="nt"></item></span>
1272	<span·class="w">»»»</span><span·class="nt"><item></span>isoTime=20251216T~~09163~~5<span·class="nt"></item></span>	1272	<span·class="w">»»»</span><span·class="nt"><item></span>isoTime=20241114T124015<span·class="nt"></item></span>
1273	<span·class="w">»»»</span><span·class="nt"><item></span>id=20251216T~~09163~~5p~~3949071~~<span·class="nt"></item></span>	1273	<span·class="w">»»»</span><span·class="nt"><item></span>id=20241114T124015p4030302<span·class="nt"></item></span>
1274	<span·class="w">»»»</span><span·class="nt"><item></span>d.id=20251216T~~09163~~5p~~3949071~~<span·class="nt"></item></span>	1274	<span·class="w">»»»</span><span·class="nt"><item></span>d.id=20241114T124015p4030302<span·class="nt"></item></span>
1275	<span·class="w">»»»</span><span·class="nt"><item></span>id.d=20251216T~~09163~~5p~~3949071~~<span·class="nt"></item></span>	1275	<span·class="w">»»»</span><span·class="nt"><item></span>id.d=20241114T124015p4030302<span·class="nt"></item></span>
1276	<span·class="w">»»</span><span·class="nt"></tags></span>	1276	<span·class="w">»»</span><span·class="nt"></tags></span>
1277	<span·class="w">»»</span><span·class="nt"><engines</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"7"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="nt">></span>	1277	<span·class="w">»»</span><span·class="nt"><engines</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"7"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="nt">></span>
1278	<span·class="w">»»»</span><span·class="nt"><count></span>1<span·class="nt"></count></span>	1278	<span·class="w">»»»</span><span·class="nt"><count></span>1<span·class="nt"></count></span>
1279	<span·class="w">»»»</span><span·class="nt"><item_version></span>1<span·class="nt"></item_version></span>	1279	<span·class="w">»»»</span><span·class="nt"><item_version></span>1<span·class="nt"></item_version></span>
1280	<span·class="w">»»»</span><span·class="nt"><item</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"8"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"1"</span><span·class="nt">></span>	1280	<span·class="w">»»»</span><span·class="nt"><item</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"8"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"1"</span><span·class="nt">></span>
1281	<span·class="w">»»»»</span><span·class="nt"><px</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"10"</span><span·class="w">·</span><span·class="na">class_name=</span><span·class="s">"yade::GravityEngine"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"1"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">object_id=</span><span·class="s">"_4"</span><span·class="nt">></span>	1281	<span·class="w">»»»»</span><span·class="nt"><px</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"10"</span><span·class="w">·</span><span·class="na">class_name=</span><span·class="s">"yade::GravityEngine"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"1"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">object_id=</span><span·class="s">"_4"</span><span·class="nt">></span>
1282	<span·class="w">»»»»»</span><span·class="nt"><FieldApplier</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"11"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"1"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">object_id=</span><span·class="s">"_5"</span><span·class="nt">></span>	1282	<span·class="w">»»»»»</span><span·class="nt"><FieldApplier</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"11"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"1"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">object_id=</span><span·class="s">"_5"</span><span·class="nt">></span>
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1945	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[42]:·</span><span·class="n">ld</span><span·class="o">=</span><span·class="n">LawDispatcher</span><span·class="p">([</span><span·class="n">Law2_ScGeom_CpmPhys_Cpm</span><span·class="p">()])</span>	1945	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[42]:·</span><span·class="n">ld</span><span·class="o">=</span><span·class="n">LawDispatcher</span><span·class="p">([</span><span·class="n">Law2_ScGeom_CpmPhys_Cpm</span><span·class="p">()])</span>

1946	<span·class="gp">Yade·[43]:·</span><span·class="n">ld</span><span·class="o">.</span><span·class="n">dispMatrix</span><span·class="p">()</span>	1946	<span·class="gp">Yade·[43]:·</span><span·class="n">ld</span><span·class="o">.</span><span·class="n">dispMatrix</span><span·class="p">()</span>
1947	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">43</span><span·class="p">]:</span>·<span·class="p">{(</span><span·class="s1">'GenericSpheresContact'</span><span·class="p">,</span>·<span·class="s1">'CpmPhys'</span><span·class="p">):</span>·<span·class="s1">'Law2_ScGeom_CpmPhys_Cpm'</span><span·class="p">}</span>	1947	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">43</span><span·class="p">]:</span>·<span·class="p">{(</span><span·class="s1">'GenericSpheresContact'</span><span·class="p">,</span>·<span·class="s1">'CpmPhys'</span><span·class="p">):</span>·<span·class="s1">'Law2_ScGeom_CpmPhys_Cpm'</span><span·class="p">}</span>

1948	<span·class="c">#·see·how·the·entry·for·ScGridCoGeom·will·be·filled·after·this·request</span>	1948	<span·class="c">#·see·how·the·entry·for·ScGridCoGeom·will·be·filled·after·this·request</span>
1949	<span·class="gp">Yade·[44]:·</span><span·class="n">ld</span><span·class="o">.</span><span·class="n">dispFunctor</span><span·class="p">(</span><span·class="n">ScGridCoGeom</span><span·class="p">(),</span><span·class="n">CpmPhys</span><span·class="p">())</span>	1949	<span·class="gp">Yade·[44]:·</span><span·class="n">ld</span><span·class="o">.</span><span·class="n">dispFunctor</span><span·class="p">(</span><span·class="n">ScGridCoGeom</span><span·class="p">(),</span><span·class="n">CpmPhys</span><span·class="p">())</span>
1950	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">44</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">Law2_ScGeom_CpmPhys_Cpm</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0xd1~~41af~~0</span><span·class="o">></span>	1950	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">44</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">Law2_ScGeom_CpmPhys_Cpm</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x30176720</span><span·class="o">></span>

1951	<span·class="gp">Yade·[45]:·</span><span·class="n">ld</span><span·class="o">.</span><span·class="n">dispMatrix</span><span·class="p">()</span>	1951	<span·class="gp">Yade·[45]:·</span><span·class="n">ld</span><span·class="o">.</span><span·class="n">dispMatrix</span><span·class="p">()</span>
1952	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">45</span><span·class="p">]:</span>·	1952	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">45</span><span·class="p">]:</span>·
1953	<span·class="go">{('GenericSpheresContact',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm',</span>	1953	<span·class="go">{('GenericSpheresContact',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm',</span>
1954	<span·class="go">·('ScGridCoGeom',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm'}</span>	1954	<span·class="go">·('ScGridCoGeom',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm'}</span>
1955	</pre></div>	1955	</pre></div>
1956	</div>	1956	</div>
Offset 2073, 27 lines modified		Offset 2073, 27 lines modified
2073	<span·class="gp">Yade·[51]:·</span><span·class="n">yade</span><span·class="o">.</span><span·class="n">timing</span><span·class="o">.</span><span·class="n">reset</span><span·class="p">()</span>···················<span·class="c1">##·not·necessary·if·used·for·the·first·time</span>	2073	<span·class="gp">Yade·[51]:·</span><span·class="n">yade</span><span·class="o">.</span><span·class="n">timing</span><span·class="o">.</span><span·class="n">reset</span><span·class="p">()</span>···················<span·class="c1">##·not·necessary·if·used·for·the·first·time</span>


Offset 469, 15 lines modified		Offset 469, 15 lines modified
469	<li><p>Set·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.material">Body.material</a>·(last-defined·material·is·used,·otherwise·a·default·material·is·created)</p></li>	469	<li><p>Set·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.material">Body.material</a>·(last-defined·material·is·used,·otherwise·a·default·material·is·created)</p></li>
470	<li><p>Set·position·and·orientation·in·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.state">Body.state</a>,·compute·mass·and·moment·of·inertia·based·on·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Material">Material</a>·and·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Shape">Shape</a></p></li>	470	<li><p>Set·position·and·orientation·in·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.state">Body.state</a>,·compute·mass·and·moment·of·inertia·based·on·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Material">Material</a>·and·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Shape">Shape</a></p></li>
471	</ol>	471	</ol>
472	<p>In·order·to·avoid·such·tasks,·shorthand·functions·are·defined·in·the·<a·class="reference·external"·href="yade.utils.html#">utils</a>·module;·to·mention·a·few·of·them,·they·are·<a·class="reference·external"·href="yade.utils.html#yade.utils.sphere">utils.sphere</a>,·<a·class="reference·external"·href="yade.utils.html#yade.utils.facet">utils.facet</a>,·<a·class="reference·external"·href="yade.utils.html#yade.utils.wall">utils.wall</a>.</p>	472	<p>In·order·to·avoid·such·tasks,·shorthand·functions·are·defined·in·the·<a·class="reference·external"·href="yade.utils.html#">utils</a>·module;·to·mention·a·few·of·them,·they·are·<a·class="reference·external"·href="yade.utils.html#yade.utils.sphere">utils.sphere</a>,·<a·class="reference·external"·href="yade.utils.html#yade.utils.facet">utils.facet</a>,·<a·class="reference·external"·href="yade.utils.html#yade.utils.wall">utils.wall</a>.</p>
473	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[43]:·</span><span·class="n">s</span><span·class="o">=</span><span·class="n">utils</span><span·class="o">.</span><span·class="n">sphere</span><span·class="p">((</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">),</span><span·class="n">radius</span><span·class="o">=</span><span·class="mi">1</span><span·class="p">)</span>····<span·class="c1">#·create·sphere·particle·centered·at·(0,0,0)·with·radius=1</span>	473	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[43]:·</span><span·class="n">s</span><span·class="o">=</span><span·class="n">utils</span><span·class="o">.</span><span·class="n">sphere</span><span·class="p">((</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">),</span><span·class="n">radius</span><span·class="o">=</span><span·class="mi">1</span><span·class="p">)</span>····<span·class="c1">#·create·sphere·particle·centered·at·(0,0,0)·with·radius=1</span>

474	<span·class="gp">Yade·[44]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">shape</span>·······················<span·class="c1">#·s.shape·describes·the·geometry·of·the·particle</span>	474	<span·class="gp">Yade·[44]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">shape</span>·······················<span·class="c1">#·s.shape·describes·the·geometry·of·the·particle</span>
475	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">44</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">Sphere</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0xd3~~9d63~~0</span><span·class="o">></span>	475	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">44</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">Sphere</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x303cf390</span><span·class="o">></span>

476	<span·class="gp">Yade·[45]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">shape</span><span·class="o">.</span><span·class="n">radius</span>················<span·class="c1">#·we·already·know·the·Sphere·class</span>	476	<span·class="gp">Yade·[45]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">shape</span><span·class="o">.</span><span·class="n">radius</span>················<span·class="c1">#·we·already·know·the·Sphere·class</span>
477	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">45</span><span·class="p">]:</span>·<span·class="mf">1.0</span>	477	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">45</span><span·class="p">]:</span>·<span·class="mf">1.0</span>

478	<span·class="gp">Yade·[46]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">state</span><span·class="o">.</span><span·class="n">mass</span><span·class="p">,</span>·<span·class="n">s</span><span·class="o">.</span><span·class="n">state</span><span·class="o">.</span><span·class="n">inertia</span>·<span·class="c1">#·inertia·is·computed·from·density·and·geometry</span>	478	<span·class="gp">Yade·[46]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">state</span><span·class="o">.</span><span·class="n">mass</span><span·class="p">,</span>·<span·class="n">s</span><span·class="o">.</span><span·class="n">state</span><span·class="o">.</span><span·class="n">inertia</span>·<span·class="c1">#·inertia·is·computed·from·density·and·geometry</span>
479	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">46</span><span·class="p">]:</span>·	479	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">46</span><span·class="p">]:</span>·
480	<span·class="go">(4188.790204786391,</span>	480	<span·class="go">(4188.790204786391,</span>
Offset 500, 52 lines modified		Offset 500, 51 lines modified
500	<h4>Packs<a·class="headerlink"·href="#packs"·title="Link·to·this·heading">¶</a></h4>	500	<h4>Packs<a·class="headerlink"·href="#packs"·title="Link·to·this·heading">¶</a></h4>
501	<p>There·are·functions·to·generate·a·specific·arrangement·of·particles·in·the·<a·class="reference·external"·href="yade.pack.html#">pack</a>·module;·for·instance,·cloud·(random·loose·packing)·of·spheres·can·be·generated·with·the·<a·class="reference·external"·href="yade.pack.html#yade._packSpheres.SpherePack">pack.SpherePack</a>·class:</p>	501	<p>There·are·functions·to·generate·a·specific·arrangement·of·particles·in·the·<a·class="reference·external"·href="yade.pack.html#">pack</a>·module;·for·instance,·cloud·(random·loose·packing)·of·spheres·can·be·generated·with·the·<a·class="reference·external"·href="yade.pack.html#yade._packSpheres.SpherePack">pack.SpherePack</a>·class:</p>
502	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[50]:·</span><span·class="kn">from</span>·<span·class="nn">yade</span>·<span·class="kn">import</span>·<span·class="n">pack</span>	502	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[50]:·</span><span·class="kn">from</span>·<span·class="nn">yade</span>·<span·class="kn">import</span>·<span·class="n">pack</span>

503	<span·class="gp">Yade·[51]:·</span><span·class="n">sp</span><span·class="o">=</span><span·class="n">pack</span><span·class="o">.</span><span·class="n">SpherePack</span><span·class="p">()</span>···················<span·class="c1">#·create·an·empty·cloud;·SpherePack·contains·only·geometrical·information</span>	503	<span·class="gp">Yade·[51]:·</span><span·class="n">sp</span><span·class="o">=</span><span·class="n">pack</span><span·class="o">.</span><span·class="n">SpherePack</span><span·class="p">()</span>···················<span·class="c1">#·create·an·empty·cloud;·SpherePack·contains·only·geometrical·information</span>

504	<span·class="gp">Yade·[52]:·</span><span·class="n">sp</span><span·class="o">.</span><span·class="n">makeCloud</span><span·class="p">((</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">),(</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">),</span><span·class="n">rMean</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">)</span>·<span·class="c1">#·put·spheres·with·defined·radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)</span>	504	<span·class="gp">Yade·[52]:·</span><span·class="n">sp</span><span·class="o">.</span><span·class="n">makeCloud</span><span·class="p">((</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">),(</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">),</span><span·class="n">rMean</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">)</span>·<span·class="c1">#·put·spheres·with·defined·radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)</span>
505	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">52</span><span·class="p">]:</span>·<span·class="mi">7</span>	505	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">52</span><span·class="p">]:</span>·<span·class="mi">6</span>

506	<span·class="gp">Yade·[53]:·</span><span·class="k">for</span>·<span·class="n">c</span><span·class="p">,</span><span·class="n">r</span>·<span·class="ow">in</span>·<span·class="n">sp</span><span·class="p">:</span>·<span·class="nb">print</span><span·class="p">(</span><span·class="n">c</span><span·class="p">,</span><span·class="n">r</span><span·class="p">)</span>···············<span·class="c1">#·print·center·and·radius·of·all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)</span>	506	<span·class="gp">Yade·[53]:·</span><span·class="k">for</span>·<span·class="n">c</span><span·class="p">,</span><span·class="n">r</span>·<span·class="ow">in</span>·<span·class="n">sp</span><span·class="p">:</span>·<span·class="nb">print</span><span·class="p">(</span><span·class="n">c</span><span·class="p">,</span><span·class="n">r</span><span·class="p">)</span>···············<span·class="c1">#·print·center·and·radius·of·all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)</span>
507	<span·class="gp">···....:</span>·	507	<span·class="gp">···....:</span>·
		508	<span·class="go">Vector3(1.786438398007278439,1.422664901800144266,1.412979460974228774)·0.2</span>
		509	<span·class="go">Vector3(1.450269069371171948,1.655630676255681388,1.482458438983897731)·0.2</span>
		510	<span·class="go">Vector3(1.419051080991349467,1.204814396613702154,1.317471685764078027)·0.2</span>
		511	<span·class="go">Vector3(1.203815082158440797,1.21699220834480637,1.726883391635978926)·0.2</span>
		512	<span·class="go">Vector3(1.789544955537425652,1.786716625597271957,1.662674129395844025)·0.2</span>
		513	<span·class="go">Vector3(1.761646975490197109,1.30887077539351715,1.798498157859674595)·0.2</span>
508	<span·class="go">Vector3(1.394731201966461942,1.664484901313465048,1.385373125767966007)·0.2</span>
509	<span·class="go">Vector3(1.573276978834206252,1.277666264721350142,1.599516177373649706)·0.2</span>
510	<span·class="go">Vector3(1.202521155162297184,1.242893491495172364,1.379861281561194364)·0.2</span>
511	<span·class="go">Vector3(1.580375770231970511,1.712959861901591552,1.794676038524295913)·0.2</span>
512	<span·class="go">Vector3(1.662482666771510242,1.290558435897736,1.20444512769806944)·0.2</span>


Offset 64, 15 lines modified		Offset 64, 15 lines modified
64	Yade·[1]:·len(O.materials)	64	Yade·[1]:·len(O.materials)
65	Out[1]:·0	65	Out[1]:·0

66	Yade·[2]:·idConcrete=O.materials.append(FrictMat	66	Yade·[2]:·idConcrete=O.materials.append(FrictMat
67	(young=30e9,poisson=.2,frictionAngle=.6,label="concrete"))	67	(young=30e9,poisson=.2,frictionAngle=.6,label="concrete"))

68	Yade·[3]:·O.materials[idConcrete]	68	Yade·[3]:·O.materials[idConcrete]
69	Out[3]:·<FrictMat·instance·at·0x~~d2ecfa~~0>	69	Out[3]:·<FrictMat·instance·at·0x303b6420>

70	#·uses·the·last·defined·material	70	#·uses·the·last·defined·material
71	Yade·[4]:·O.bodies.append(sphere(center=(0,0,0),radius=1))	71	Yade·[4]:·O.bodies.append(sphere(center=(0,0,0),radius=1))
72	Out[4]:·0	72	Out[4]:·0

73	#·material·given·by·id	73	#·material·given·by·id
74	Yade·[5]:·O.bodies.append(sphere((0,0,2),1,material=idConcrete))	74	Yade·[5]:·O.bodies.append(sphere((0,0,2),1,material=idConcrete))
Offset 567, 15 lines modified		Offset 567, 15 lines modified
567	···....:·]	567	···....:·]
568	···....:	568	···....:

569	Yade·[29]:·i=createInteraction(0,1)	569	Yade·[29]:·i=createInteraction(0,1)

570	#·created·by·functors·in·InteractionLoop	570	#·created·by·functors·in·InteractionLoop
571	Yade·[30]:·i.geom,·i.phys	571	Yade·[30]:·i.geom,·i.phys
572	Out[30]:·(<ScGeom·instance·at·0x~~d11cfb~~0>,·<FrictPhys·instance·at·0xd1~~84c~~c0>)	572	Out[30]:·(<ScGeom·instance·at·0x303bee80>,·<FrictPhys·instance·at·0x3012bac0>)
573	This·method·will·be·rather·slow·if·many·interactions·are·to·be·created·(the	573	This·method·will·be·rather·slow·if·many·interactions·are·to·be·created·(the
574	functor·lookup·will·be·repeated·for·each·of·them).·In·such·case,·ask·on·_\x8y_\x8a_\x8d_\x8e_\x8-	574	functor·lookup·will·be·repeated·for·each·of·them).·In·such·case,·ask·on·_\x8y_\x8a_\x8d_\x8e_\x8-
575	_\x8d_\x8e_\x8v_\x8@_\x8l_\x8i_\x8s_\x8t_\x8s_\x8._\x8l_\x8a_\x8u_\x8n_\x8c_\x8h_\x8p_\x8a_\x8d_\x8._\x8n_\x8e_\x8t·to·have·the·_\x8c_\x8r_\x8e_\x8a_\x8t_\x8e_\x8I_\x8n_\x8t_\x8e_\x8r_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n·function·accept·list·of	575	_\x8d_\x8e_\x8v_\x8@_\x8l_\x8i_\x8s_\x8t_\x8s_\x8._\x8l_\x8a_\x8u_\x8n_\x8c_\x8h_\x8p_\x8a_\x8d_\x8._\x8n_\x8e_\x8t·to·have·the·_\x8c_\x8r_\x8e_\x8a_\x8t_\x8e_\x8I_\x8n_\x8t_\x8e_\x8r_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n·function·accept·list·of
576	pairs·id’s·as·well.	576	pairs·id’s·as·well.
577	\x8\x8\x8\x8·B\x8Ba\x8as\x8se\x8e·e\x8en\x8ng\x8gi\x8in\x8ne\x8es\x8s_\x8?\x8¶·\x8\x8\x8\x8	577	\x8\x8\x8\x8·B\x8Ba\x8as\x8se\x8e·e\x8en\x8ng\x8gi\x8in\x8ne\x8es\x8s_\x8?\x8¶·\x8\x8\x8\x8
578	A·typical·DEM·simulation·in·Yade·does·at·least·the·following·at·each·step·(see	578	A·typical·DEM·simulation·in·Yade·does·at·least·the·following·at·each·step·(see
579	_\x8F_\x8u_\x8n_\x8c_\x8t_\x8i_\x8o_\x8n_\x8·_\x8c_\x8o_\x8m_\x8p_\x8o_\x8n_\x8e_\x8n_\x8t_\x8s·for·details):	579	_\x8F_\x8u_\x8n_\x8c_\x8t_\x8i_\x8o_\x8n_\x8·_\x8c_\x8o_\x8m_\x8p_\x8o_\x8n_\x8e_\x8n_\x8t_\x8s·for·details):
Offset 884, 19 lines modified		Offset 884, 19 lines modified
884	implementation·in·C++·is·different)·mapping·keys·to·labels.·Contrary·to·regular	884	implementation·in·C++·is·different)·mapping·keys·to·labels.·Contrary·to·regular
885	python·dictionaries·that·you·could·create,	885	python·dictionaries·that·you·could·create,
886	····*·O.tags·is·s\x8sa\x8av\x8ve\x8ed\x8d·a\x8an\x8nd\x8d·l\x8lo\x8oa\x8ad\x8de\x8ed\x8d·w\x8wi\x8it\x8th\x8h·s\x8si\x8im\x8mu\x8ul\x8la\x8at\x8ti\x8io\x8on\x8n;	886	····*·O.tags·is·s\x8sa\x8av\x8ve\x8ed\x8d·a\x8an\x8nd\x8d·l\x8lo\x8oa\x8ad\x8de\x8ed\x8d·w\x8wi\x8it\x8th\x8h·s\x8si\x8im\x8mu\x8ul\x8la\x8at\x8ti\x8io\x8on\x8n;
887	····*·O.tags·has·some·values·pre-initialized.	887	····*·O.tags·has·some·values·pre-initialized.
888	After·Yade·startup,·O.tags·contains·the·following:	888	After·Yade·startup,·O.tags·contains·the·following:
889	Yade·[45]:·dict(O.tags)·#·convert·to·real·dictionary	889	Yade·[45]:·dict(O.tags)·#·convert·to·real·dictionary
890	Out[45]:	890	Out[45]:
891	{'author':·'~(pbuilder1@infom02-amd64)',
892	·'isoTime':·'20251216T091639',
893	·'id':·'20251216T091639p3949071',
894	·'d.id':·'20251216T091639p3949071',
895	·'~~id.d~~':·'2~~0251216T091639p3949071~~'}	891	{'author':·'second~user~(pbuilder2@i-capture-the-hostname)',
		892	·'isoTime':·'20241114T124025',
		893	·'id':·'20241114T124025p4030302',
		894	·'d.id':·'20241114T124025p4030302',
		895	·'id.d':·'20241114T124025p4030302'}
896	··author	896	··author
897	······Real·name,·username·and·machine·as·obtained·from·your·system·at	897	······Real·name,·username·and·machine·as·obtained·from·your·system·at
898	······simulation·creation	898	······simulation·creation
899	··id	899	··id
900	······Unique·identifier·of·this·Yade·instance·(or·of·the·instance·which·created	900	······Unique·identifier·of·this·Yade·instance·(or·of·the·instance·which·created
901	······a·loaded·simulation).·It·is·composed·of·date,·time·and·process·number.	901	······a·loaded·simulation).·It·is·composed·of·date,·time·and·process·number.
902	······Useful·if·you·run·simulations·in·parallel·and·want·to·avoid·overwriting	902	······Useful·if·you·run·simulations·in·parallel·and·want·to·avoid·overwriting


Offset 36095, 15 lines modified		Offset 36095, 15 lines modified
36095	<dt·class="sig·sig-object·py"·id="yade.plot.Subdomain.completeSendBodies">	36095	<dt·class="sig·sig-object·py"·id="yade.plot.Subdomain.completeSendBodies">
36096	<span·class="sig-name·descname"><span·class="pre">completeSendBodies</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(Subdomain)arg1</span></span></em><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><span·class="pre">None</span>·<span·class="pre">:</span></span></span><a·class="headerlink"·href="#yade.plot.Subdomain.completeSendBodies"·title="Link·to·this·definition">¶</a></dt>	36096	<span·class="sig-name·descname"><span·class="pre">completeSendBodies</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(Subdomain)arg1</span></span></em><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><span·class="pre">None</span>·<span·class="pre">:</span></span></span><a·class="headerlink"·href="#yade.plot.Subdomain.completeSendBodies"·title="Link·to·this·definition">¶</a></dt>
36097	<dd><p>calls·MPI_wait·to·complete·the·non·blocking·sends/recieves.</p>	36097	<dd><p>calls·MPI_wait·to·complete·the·non·blocking·sends/recieves.</p>
36098	</dd></dl>	36098	</dd></dl>

36099	<dl·class="py·method">	36099	<dl·class="py·method">
36100	<dt·class="sig·sig-object·py"·id="yade.plot.Subdomain.countIntsWith">	36100	<dt·class="sig·sig-object·py"·id="yade.plot.Subdomain.countIntsWith">
36101	<span·class="sig-name·descname"><span·class="pre">countIntsWith</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(Subdomain)arg1</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">(int)body</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">(int)someSubDomain</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(Scene)someSubDomain=<Scene</span>·<span·class="pre">instance</span>·<span·class="pre">at</span>·<span·class="pre">0x~~acfea4~~0></span></span></em><span·class="optional">]</span><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><span·class="pre">int</span>·<span·class="pre">:</span></span></span><a·class="headerlink"·href="#yade.plot.Subdomain.countIntsWith"·title="Link·to·this·definition">¶</a></dt>	36101	<span·class="sig-name·descname"><span·class="pre">countIntsWith</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(Subdomain)arg1</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">(int)body</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">(int)someSubDomain</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(Scene)someSubDomain=<Scene</span>·<span·class="pre">instance</span>·<span·class="pre">at</span>·<span·class="pre">0x2dd02260></span></span></em><span·class="optional">]</span><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><span·class="pre">int</span>·<span·class="pre">:</span></span></span><a·class="headerlink"·href="#yade.plot.Subdomain.countIntsWith"·title="Link·to·this·definition">¶</a></dt>
36102	<dd><p>returns·for·a·body·the·count·of·interactions·(real·or·virtual)·with·bodies·from·a·certain·subdomain,·interactions·with·subdomains·excluded.·Third·parameter·(scene·pointer)·can·be·left·to·default·(equivalent·to·O._sceneObj).</p>	36102	<dd><p>returns·for·a·body·the·count·of·interactions·(real·or·virtual)·with·bodies·from·a·certain·subdomain,·interactions·with·subdomains·excluded.·Third·parameter·(scene·pointer)·can·be·left·to·default·(equivalent·to·O._sceneObj).</p>
36103	</dd></dl>	36103	</dd></dl>

36104	<dl·class="py·method">	36104	<dl·class="py·method">
36105	<dt·class="sig·sig-object·py"·id="yade.plot.Subdomain.dict">	36105	<dt·class="sig·sig-object·py"·id="yade.plot.Subdomain.dict">
36106	<span·class="sig-name·descname"><span·class="pre">dict</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(Serializable)arg1</span></span></em><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><span·class="pre">dict</span>·<span·class="pre">:</span></span></span><a·class="headerlink"·href="#yade.plot.Subdomain.dict"·title="Link·to·this·definition">¶</a></dt>	36106	<span·class="sig-name·descname"><span·class="pre">dict</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(Serializable)arg1</span></span></em><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><span·class="pre">dict</span>·<span·class="pre">:</span></span></span><a·class="headerlink"·href="#yade.plot.Subdomain.dict"·title="Link·to·this·definition">¶</a></dt>
36107	<dd><p>Return·dictionary·of·attributes.</p>	36107	<dd><p>Return·dictionary·of·attributes.</p>


Offset 17251, 15 lines modified		Offset 17251, 15 lines modified
17251	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·color_\x8¶	17251	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·color_\x8¶
17252	············Color·for·rendering·(normalized·RGB).	17252	············Color·for·rendering·(normalized·RGB).
17253	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·comm_\x8¶	17253	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·comm_\x8¶
17254	············Communicator·to·be·used·for·MPI·(converts·mpi4py·comm·<->·c++·comm)	17254	············Communicator·to·be·used·for·MPI·(converts·mpi4py·comm·<->·c++·comm)
17255	········completeSendBodies((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81)·→·None·:_\x8¶	17255	········completeSendBodies((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81)·→·None·:_\x8¶
17256	············calls·MPI_wait·to·complete·the·non·blocking·sends/recieves.	17256	············calls·MPI_wait·to·complete·the·non·blocking·sends/recieves.
17257	········countIntsWith((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81,·(\x8(i\x8in\x8nt\x8t)\x8)b\x8bo\x8od\x8dy\x8y,·(\x8(i\x8in\x8nt\x8t)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n[,	17257	········countIntsWith((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81,·(\x8(i\x8in\x8nt\x8t)\x8)b\x8bo\x8od\x8dy\x8y,·(\x8(i\x8in\x8nt\x8t)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n[,
17258	········(\x8(S\x8Sc\x8ce\x8en\x8ne\x8e)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n=\x8=<\x8<S\x8Sc\x8ce\x8en\x8ne\x8e·i\x8in\x8ns\x8st\x8ta\x8an\x8nc\x8ce\x8e·a\x8at\x8t·0\x80x\x8xa.ac.cf.fe.ea.a4.40\x80>\x8>])·→·int·:_\x8¶	17258	········(\x8(S\x8Sc\x8ce\x8en\x8ne\x8e)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n=\x8=<\x8<S\x8Sc\x8ce\x8en\x8ne\x8e·i\x8in\x8ns\x8st\x8ta\x8an\x8nc\x8ce\x8e·a\x8at\x8t·0\x80x\x8x2.2d.dd.d0.02.22.26.60\x80>\x8>])·→·int·:_\x8¶
17259	············returns·for·a·body·the·count·of·interactions·(real·or·virtual)·with	17259	············returns·for·a·body·the·count·of·interactions·(real·or·virtual)·with
17260	············bodies·from·a·certain·subdomain,·interactions·with·subdomains	17260	············bodies·from·a·certain·subdomain,·interactions·with·subdomains
17261	············excluded.·Third·parameter·(scene·pointer)·can·be·left·to·default	17261	············excluded.·Third·parameter·(scene·pointer)·can·be·left·to·default
17262	············(equivalent·to·O._sceneObj).	17262	············(equivalent·to·O._sceneObj).
17263	········dict((\x8(S\x8Se\x8er\x8ri\x8ia\x8al\x8li\x8iz\x8za\x8ab\x8bl\x8le\x8e)\x8)a\x8ar\x8rg\x8g1\x81)·→·dict·:_\x8¶	17263	········dict((\x8(S\x8Se\x8er\x8ri\x8ia\x8al\x8li\x8iz\x8za\x8ab\x8bl\x8le\x8e)\x8)a\x8ar\x8rg\x8g1\x81)·→·dict·:_\x8¶
17264	············Return·dictionary·of·attributes.	17264	············Return·dictionary·of·attributes.
17265	········dispHierarchy((\x8(S\x8Sh\x8ha\x8ap\x8pe\x8e)\x8)a\x8ar\x8rg\x8g1\x81[,·(\x8(b\x8bo\x8oo\x8ol\x8l)\x8)n\x8na\x8am\x8me\x8es\x8s=\x8=T\x8Tr\x8ru\x8ue\x8e])·→·list·:_\x8¶	17265	········dispHierarchy((\x8(S\x8Sh\x8ha\x8ap\x8pe\x8e)\x8)a\x8ar\x8rg\x8g1\x81[,·(\x8(b\x8bo\x8oo\x8ol\x8l)\x8)n\x8na\x8am\x8me\x8es\x8s=\x8=T\x8Tr\x8ru\x8ue\x8e])·→·list·:_\x8¶


Offset 1223, 15 lines modified		Offset 1223, 15 lines modified
1223	<div·class="math·notranslate·nohighlight">	1223	<div·class="math·notranslate·nohighlight">
1224	\[\sum\frac{1}{2}\left(m_i\vec{v}_i^2+\vec{\omega}(\mat{I}\vec{\omega}^T)\right).\]</div>	1224	\[\sum\frac{1}{2}\left(m_i\vec{v}_i^2+\vec{\omega}(\mat{I}\vec{\omega}^T)\right).\]</div>
1225	<p>For·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.aspherical">aspherical</a>·bodies,·necessary·frame·transformations·are·applied·to·the·inertia·tensor·<span·class="math·notranslate·nohighlight">\(\mat{I}\)</span>·as·stored·in·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.State.inertia">state.inertia</a>.</p>	1225	<p>For·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.aspherical">aspherical</a>·bodies,·necessary·frame·transformations·are·applied·to·the·inertia·tensor·<span·class="math·notranslate·nohighlight">\(\mat{I}\)</span>·as·stored·in·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.State.inertia">state.inertia</a>.</p>
1226	</dd></dl>	1226	</dd></dl>

1227	<dl·class="py·function">	1227	<dl·class="py·function">
1228	<dt·class="sig·sig-object·py"·id="yade._utils.lsSimpleShape">	1228	<dt·class="sig·sig-object·py"·id="yade._utils.lsSimpleShape">
1229	<span·class="sig-prename·descclassname"><span·class="pre">yade._utils.</span></span><span·class="sig-name·descname"><span·class="pre">lsSimpleShape</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(int)shape</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">(AlignedBox3)aabb</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(float)step=0.1</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(float)smearCoeff=1.5</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(Vector2)epsilons=Vector2(0</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">0)</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(Clump)clump=<Clump</span>·<span·class="pre">instance</span>·<span·class="pre">at</span>·<span·class="pre">0xbb7~~ce1~~0></span></span></em><span·class="optional">]</span><span·class="optional">]</span><span·class="optional">]</span><span·class="optional">]</span><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><a·class="reference·internal"·href="yade.plot.html#yade.plot.LevelSet"·title="yade.plot.LevelSet"><span·class="pre">LevelSet</span></a></span></span><a·class="headerlink"·href="#yade._utils.lsSimpleShape"·title="Link·to·this·definition">¶</a></dt>	1229	<span·class="sig-prename·descclassname"><span·class="pre">yade._utils.</span></span><span·class="sig-name·descname"><span·class="pre">lsSimpleShape</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(int)shape</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">(AlignedBox3)aabb</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(float)step=0.1</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(float)smearCoeff=1.5</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(Vector2)epsilons=Vector2(0</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">0)</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(Clump)clump=<Clump</span>·<span·class="pre">instance</span>·<span·class="pre">at</span>·<span·class="pre">0x2eb7eb60></span></span></em><span·class="optional">]</span><span·class="optional">]</span><span·class="optional">]</span><span·class="optional">]</span><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><a·class="reference·internal"·href="yade.plot.html#yade.plot.LevelSet"·title="yade.plot.LevelSet"><span·class="pre">LevelSet</span></a></span></span><a·class="headerlink"·href="#yade._utils.lsSimpleShape"·title="Link·to·this·definition">¶</a></dt>
1230	<dd><p>Creates·a·LevelSet·shape·among·pre-defined·ones.·Not·intended·to·be·used·directly,·see·levelSetBody()·instead.</p>	1230	<dd><p>Creates·a·LevelSet·shape·among·pre-defined·ones.·Not·intended·to·be·used·directly,·see·levelSetBody()·instead.</p>
1231	<dl·class="field-list·simple">	1231	<dl·class="field-list·simple">
1232	<dt·class="field-odd">Parameters<span·class="colon">:</span></dt>	1232	<dt·class="field-odd">Parameters<span·class="colon">:</span></dt>
1233	<dd·class="field-odd"><ul·class="simple">	1233	<dd·class="field-odd"><ul·class="simple">
1234	<li><p><strong>shape</strong>·(<em>int</em>)·–·a·shape·index·among·supported·choices</p></li>	1234	<li><p><strong>shape</strong>·(<em>int</em>)·–·a·shape·index·among·supported·choices</p></li>
1235	<li><p><strong>aabb</strong>·(<a·class="reference·internal"·href="yade.minieigenHP.html#yade._minieigenHP.AlignedBox3"·title="yade._minieigenHP.AlignedBox3"><em>AlignedBox3</em></a>)·–·the·axis-aligned·surrounding·box·of·the·body</p></li>	1235	<li><p><strong>aabb</strong>·(<a·class="reference·internal"·href="yade.minieigenHP.html#yade._minieigenHP.AlignedBox3"·title="yade._minieigenHP.AlignedBox3"><em>AlignedBox3</em></a>)·–·the·axis-aligned·surrounding·box·of·the·body</p></li>
1236	<li><p><strong>step</strong>·(<em>Real</em>)·–·the·LevelSet·grid·step·size</p></li>	1236	<li><p><strong>step</strong>·(<em>Real</em>)·–·the·LevelSet·grid·step·size</p></li>


Offset 872, 15 lines modified		Offset 872, 15 lines modified
872	······Compute·overall·kinetic·energy·of·the·simulation·as	872	······Compute·overall·kinetic·energy·of·the·simulation·as
873	······\[\sum\frac{1}{2}\left(m_i\vec{v}_i^2+\vec{\omega}(\mat{I}\vec	873	······\[\sum\frac{1}{2}\left(m_i\vec{v}_i^2+\vec{\omega}(\mat{I}\vec
874	······{\omega}^T)\right).\]	874	······{\omega}^T)\right).\]
875	······For·_\x8a_\x8s_\x8p_\x8h_\x8e_\x8r_\x8i_\x8c_\x8a_\x8l·bodies,·necessary·frame·transformations·are·applied·to·the	875	······For·_\x8a_\x8s_\x8p_\x8h_\x8e_\x8r_\x8i_\x8c_\x8a_\x8l·bodies,·necessary·frame·transformations·are·applied·to·the
876	······inertia·tensor·\(\mat{I}\)·as·stored·in·_\x8s_\x8t_\x8a_\x8t_\x8e_\x8._\x8i_\x8n_\x8e_\x8r_\x8t_\x8i_\x8a.	876	······inertia·tensor·\(\mat{I}\)·as·stored·in·_\x8s_\x8t_\x8a_\x8t_\x8e_\x8._\x8i_\x8n_\x8e_\x8r_\x8t_\x8i_\x8a.
877	··yade._utils.lsSimpleShape((\x8(i\x8in\x8nt\x8t)\x8)s\x8sh\x8ha\x8ap\x8pe\x8e,·(\x8(A\x8Al\x8li\x8ig\x8gn\x8ne\x8ed\x8dB\x8Bo\x8ox\x8x3\x83)\x8)a\x8aa\x8ab\x8bb\x8b[,·(\x8(f\x8fl\x8lo\x8oa\x8at\x8t)\x8)s\x8st\x8te\x8ep\x8p=\x8=0\x80.\x8.1\x81[,	877	··yade._utils.lsSimpleShape((\x8(i\x8in\x8nt\x8t)\x8)s\x8sh\x8ha\x8ap\x8pe\x8e,·(\x8(A\x8Al\x8li\x8ig\x8gn\x8ne\x8ed\x8dB\x8Bo\x8ox\x8x3\x83)\x8)a\x8aa\x8ab\x8bb\x8b[,·(\x8(f\x8fl\x8lo\x8oa\x8at\x8t)\x8)s\x8st\x8te\x8ep\x8p=\x8=0\x80.\x8.1\x81[,
878	··(\x8(f\x8fl\x8lo\x8oa\x8at\x8t)\x8)s\x8sm\x8me\x8ea\x8ar\x8rC\x8Co\x8oe\x8ef\x8ff\x8f=\x8=1\x81.\x8.5\x85[,·(\x8(V\x8Ve\x8ec\x8ct\x8to\x8or\x8r2\x82)\x8)e\x8ep\x8ps\x8si\x8il\x8lo\x8on\x8ns\x8s=\x8=V\x8Ve\x8ec\x8ct\x8to\x8or\x8r2\x82(\x8(0\x80,·0\x80)\x8)[,·(\x8(C\x8Cl\x8lu\x8um\x8mp\x8p)\x8)c\x8cl\x8lu\x8um\x8mp\x8p=\x8=<\x8<C\x8Cl\x8lu\x8um\x8mp\x8p	878	··(\x8(f\x8fl\x8lo\x8oa\x8at\x8t)\x8)s\x8sm\x8me\x8ea\x8ar\x8rC\x8Co\x8oe\x8ef\x8ff\x8f=\x8=1\x81.\x8.5\x85[,·(\x8(V\x8Ve\x8ec\x8ct\x8to\x8or\x8r2\x82)\x8)e\x8ep\x8ps\x8si\x8il\x8lo\x8on\x8ns\x8s=\x8=V\x8Ve\x8ec\x8ct\x8to\x8or\x8r2\x82(\x8(0\x80,·0\x80)\x8)[,·(\x8(C\x8Cl\x8lu\x8um\x8mp\x8p)\x8)c\x8cl\x8lu\x8um\x8mp\x8p=\x8=<\x8<C\x8Cl\x8lu\x8um\x8mp\x8p
879	··i\x8in\x8ns\x8st\x8ta\x8an\x8nc\x8ce\x8e·a\x8at\x8t·0\x80x\x8xb.bb.b7.7c.ce.e1.10\x80>\x8>]]]])·→·_\x8L_\x8e_\x8v_\x8e_\x8l_\x8S_\x8e_\x8t_\x8¶	879	··i\x8in\x8ns\x8st\x8ta\x8an\x8nc\x8ce\x8e·a\x8at\x8t·0\x80x\x8x2.2e.eb.b7.7e.eb.b6.60\x80>\x8>]]]])·→·_\x8L_\x8e_\x8v_\x8e_\x8l_\x8S_\x8e_\x8t_\x8¶
880	······Creates·a·LevelSet·shape·among·pre-defined·ones.·Not·intended·to·be·used	880	······Creates·a·LevelSet·shape·among·pre-defined·ones.·Not·intended·to·be·used
881	······directly,·see·levelSetBody()·instead.	881	······directly,·see·levelSetBody()·instead.
882	········Parameters:	882	········Parameters:
883	················*·s\x8sh\x8ha\x8ap\x8pe\x8e·(i\x8in\x8nt\x8t)·–·a·shape·index·among·supported·choices	883	················*·s\x8sh\x8ha\x8ap\x8pe\x8e·(i\x8in\x8nt\x8t)·–·a·shape·index·among·supported·choices
884	················*·a\x8aa\x8ab\x8bb\x8b·(_\x8A\x8A_\x8l\x8l_\x8i\x8i_\x8g\x8g_\x8n\x8n_\x8e\x8e_\x8d\x8d_\x8B\x8B_\x8o\x8o_\x8x\x8x_\x83\x83)·–·the·axis-aligned·surrounding·box·of·the	884	················*·a\x8aa\x8ab\x8bb\x8b·(_\x8A\x8A_\x8l\x8l_\x8i\x8i_\x8g\x8g_\x8n\x8n_\x8e\x8e_\x8d\x8d_\x8B\x8B_\x8o\x8o_\x8x\x8x_\x83\x83)·–·the·axis-aligned·surrounding·box·of·the
885	··················body	885	··················body
886	················*·s\x8st\x8te\x8ep\x8p·(R\x8Re\x8ea\x8al\x8l)·–·the·LevelSet·grid·step·size	886	················*·s\x8st\x8te\x8ep\x8p·(R\x8Re\x8ea\x8al\x8l)·–·the·LevelSet·grid·step·size


Offset 113, 81 lines modified		Offset 113, 81 lines modified
113	············Update·object·attributes·from·given·dictionary	113	············Update·object·attributes·from·given·dictionary
114	\x8\x8\x8\x8·S\x8Sh\x8ha\x8ap\x8pe\x8e_\x8?\x8¶·\x8\x8\x8\x8	114	\x8\x8\x8\x8·S\x8Sh\x8ha\x8ap\x8pe\x8e_\x8?\x8¶·\x8\x8\x8\x8
115	[digraph·Shape·{	115	[digraph·Shape·{
116	········rankdir=RL;	116	········rankdir=RL;
117	········margin="0.2,0.05";	117	········margin="0.2,0.05";
118	········"Shape"·[shape="box",fontsize=8,style="setlinewidth	118	········"Shape"·[shape="box",fontsize=8,style="setlinewidth
119	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Shape"];	119	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Shape"];
		120	········"Lin4NodeTetra"·[shape="box",fontsize=8,style="setlinewidth
		121	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra"];
		122	········"Lin4NodeTetra"·->·"DeformableElement"
		123	[arrowsize=0.5,style="setlinewidth(0.5)"];
		124	········"DeformableElement"·[shape="box",fontsize=8,style="setlinewidth
		125	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableElement"];
		126	········"DeformableElement"·->·"Shape"·[arrowsize=0.5,style="setlinewidth
		127	(0.5)"];
		128	········"ChainedCylinder"·[shape="box",fontsize=8,style="setlinewidth
		129	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ChainedCylinder"];
		130	········"ChainedCylinder"·->·"Cylinder"·[arrowsize=0.5,style="setlinewidth
		131	(0.5)"];
120	········"Subdomain"·[shape="box",fontsize=8,style="setlinewidth	132	········"Subdomain"·[shape="box",fontsize=8,style="setlinewidth
121	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Subdomain"];	133	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Subdomain"];
122	········"Subdomain"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	134	········"Subdomain"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
123	········"LevelSet"·[shape="box",fontsize=8,style="setlinewidth
124	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.LevelSet"];
125	········"LevelSet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
126	········"PFacet"·[shape="box",fontsize=8,style="setlinewidth
127	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PFacet"];
128	········"PFacet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
129	········"~~Tet~~ra"·[shape="box",fontsize=8,style="setlinewidth	135	········"Sphere"·[shape="box",fontsize=8,style="setlinewidth
130	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.~~Tet~~ra"];	136	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Sphere"];
131	········"~~Tet~~ra"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	137	········"Sphere"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		138	········"FluidDomainBbox"·[shape="box",fontsize=8,style="setlinewidth
		139	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.FluidDomainBbox"];
		140	········"FluidDomainBbox"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		141	········"Node"·[shape="box",fontsize=8,style="setlinewidth
		142	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Node"];
		143	········"Node"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
132	········"GridNode"·[shape="box",fontsize=8,style="setlinewidth	144	········"GridNode"·[shape="box",fontsize=8,style="setlinewidth
133	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridNode"];	145	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridNode"];
134	········"GridNode"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];	146	········"GridNode"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		147	········"LevelSet"·[shape="box",fontsize=8,style="setlinewidth
		148	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.LevelSet"];
		149	········"LevelSet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
135	········"Facet"·[shape="box",fontsize=8,style="setlinewidth	150	········"Facet"·[shape="box",fontsize=8,style="setlinewidth
136	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Facet"];	151	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Facet"];
137	········"Facet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	152	········"Facet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
138	········"~~Box~~"·[shape="box",fontsize=8,style="setlinewidth	153	········"Wall"·[shape="box",fontsize=8,style="setlinewidth
139	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.~~Box~~"];	154	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Wall"];
140	········"~~Box~~"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	155	········"Wall"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
141	········"DeformableElement"·[shape="box",fontsize=8,style="setlinewidth
142	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableElement"];
143	········"DeformableElement"·->·"Shape"·[arrowsize=0.5,style="setlinewidth
144	(0.5)"];
145	········"Node"·[shape="box",fontsize=8,style="setlinewidth	156	········"PotentialParticle"·[shape="box",fontsize=8,style="setlinewidth
146	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Node"];	157	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PotentialParticle"];
147	········"Node"·->·"Shape"·[arrowsize=0.5,style="setlinewidth~~(0.5)"];~~	158	········"PotentialParticle"·->·"Shape"·[arrowsize=0.5,style="setlinewidth
148	········"ChainedCylinder"·[shape="box",fontsize=8,style="setlinewidth
149	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ChainedCylinder"];
150	········"ChainedCylinder"·->·"Cylinder"·[arrowsize=0.5,style="setlinewidth
151	(0.5)"];	159	(0.5)"];
		160	········"Tetra"·[shape="box",fontsize=8,style="setlinewidth
		161	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Tetra"];
		162	········"Tetra"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		163	········"Cylinder"·[shape="box",fontsize=8,style="setlinewidth
		164	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Cylinder"];
		165	········"Cylinder"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
152	········"Clump"·[shape="box",fontsize=8,style="setlinewidth	166	········"Clump"·[shape="box",fontsize=8,style="setlinewidth
153	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Clump"];	167	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Clump"];
154	········"Clump"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	168	········"Clump"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		169	········"Box"·[shape="box",fontsize=8,style="setlinewidth
		170	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Box"];
		171	········"Box"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
155	········"DeformableCohesiveElement"·[shape="box",fontsize=8,style="setlinewidth	172	········"DeformableCohesiveElement"·[shape="box",fontsize=8,style="setlinewidth
156	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableCohesiveElement"];	173	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableCohesiveElement"];
157	········"DeformableCohesiveElement"·->·"DeformableElement"	174	········"DeformableCohesiveElement"·->·"DeformableElement"
158	[arrowsize=0.5,style="setlinewidth(0.5)"];	175	[arrowsize=0.5,style="setlinewidth(0.5)"];
		176	········"GridConnection"·[shape="box",fontsize=8,style="setlinewidth
		177	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridConnection"];
		178	········"GridConnection"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
159	········"Lin4NodeTetra_Lin4NodeTetra_InteractionElement"	179	········"Lin4NodeTetra_Lin4NodeTetra_InteractionElement"
160	[shape="box",fontsize=8,style="setlinewidth	180	[shape="box",fontsize=8,style="setlinewidth
161	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra_Lin4NodeTetra_InteractionElement"];	181	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra_Lin4NodeTetra_InteractionElement"];
162	········"Lin4NodeTetra_Lin4NodeTetra_InteractionElement"·-	182	········"Lin4NodeTetra_Lin4NodeTetra_InteractionElement"·-
163	>·"DeformableCohesiveElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];	183	>·"DeformableCohesiveElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
164	········"Sphere"·[shape="box",fontsize=8,style="setlinewidth
165	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Sphere"];
166	········"Sphere"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
167	········"Cylinder"·[shape="box",fontsize=8,style="setlinewidth
168	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Cylinder"];
169	········"Cylinder"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
170	········"FluidDomainBbox"·[shape="box",fontsize=8,style="setlinewidth
171	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.FluidDomainBbox"];
172	········"FluidDomainBbox"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
173	········"GridConnection"·[shape="box",fontsize=8,style="setlinewidth
174	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridConnection"];
175	········"GridConnection"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
176	········"Wall"·[shape="box",fontsize=8,style="setlinewidth	184	········"PFacet"·[shape="box",fontsize=8,style="setlinewidth
177	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Wall"];	185	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PFacet"];
178	········"Wall"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	186	········"PFacet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
179	········"Lin4NodeTetra"·[shape="box",fontsize=8,style="setlinewidth
180	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra"];
181	········"Lin4NodeTetra"·->·"DeformableElement"
182	[arrowsize=0.5,style="setlinewidth(0.5)"];
183	········"PotentialParticle"·[shape="box",fontsize=8,style="setlinewidth
184	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PotentialParticle"];
185	········"PotentialParticle"·->·"Shape"·[arrowsize=0.5,style="setlinewidth
186	(0.5)"];
187	}]	187	}]
188	Inheritance·graph·of·Shape._\x8¶	188	Inheritance·graph·of·Shape._\x8¶
189	··c\x8cl\x8la\x8as\x8ss\x8s·yade.wrapper.Shape(i\x8in\x8nh\x8he\x8er\x8ri\x8it\x8ts\x8s·S\x8Se\x8er\x8ri\x8ia\x8al\x8li\x8iz\x8za\x8ab\x8bl\x8le\x8e)_\x8¶	189	··c\x8cl\x8la\x8as\x8ss\x8s·yade.wrapper.Shape(i\x8in\x8nh\x8he\x8er\x8ri\x8it\x8ts\x8s·S\x8Se\x8er\x8ri\x8ia\x8al\x8li\x8iz\x8za\x8ab\x8bl\x8le\x8e)_\x8¶
190	······Geometry·of·a·body	190	······Geometry·of·a·body
191	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·color_\x8¶	191	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·color_\x8¶
192	············Color·for·rendering·(normalized·RGB).	192	············Color·for·rendering·(normalized·RGB).
193	········dict((\x8(S\x8Se\x8er\x8ri\x8ia\x8al\x8li\x8iz\x8za\x8ab\x8bl\x8le\x8e)\x8)a\x8ar\x8rg\x8g1\x81)·→·dict·:_\x8¶	193	········dict((\x8(S\x8Se\x8er\x8ri\x8ia\x8al\x8li\x8iz\x8za\x8ab\x8bl\x8le\x8e)\x8)a\x8ar\x8rg\x8g1\x81)·→·dict·:_\x8¶
Offset 923, 15 lines modified		Offset 923, 15 lines modified
923	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·color_\x8¶	923	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·color_\x8¶
924	············Color·for·rendering·(normalized·RGB).	924	············Color·for·rendering·(normalized·RGB).
925	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·comm_\x8¶	925	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·comm_\x8¶
926	············Communicator·to·be·used·for·MPI·(converts·mpi4py·comm·<->·c++·comm)	926	············Communicator·to·be·used·for·MPI·(converts·mpi4py·comm·<->·c++·comm)
927	········completeSendBodies((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81)·→·None·:_\x8¶	927	········completeSendBodies((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81)·→·None·:_\x8¶
928	············calls·MPI_wait·to·complete·the·non·blocking·sends/recieves.	928	············calls·MPI_wait·to·complete·the·non·blocking·sends/recieves.
929	········countIntsWith((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81,·(\x8(i\x8in\x8nt\x8t)\x8)b\x8bo\x8od\x8dy\x8y,·(\x8(i\x8in\x8nt\x8t)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n[,	929	········countIntsWith((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81,·(\x8(i\x8in\x8nt\x8t)\x8)b\x8bo\x8od\x8dy\x8y,·(\x8(i\x8in\x8nt\x8t)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n[,
930	········(\x8(S\x8Sc\x8ce\x8en\x8ne\x8e)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n=\x8=<\x8<S\x8Sc\x8ce\x8en\x8ne\x8e·i\x8in\x8ns\x8st\x8ta\x8an\x8nc\x8ce\x8e·a\x8at\x8t·0\x80x\x8xa.ac.cf.fe.ea.a4.40\x80>\x8>])·→·int·:_\x8¶	930	········(\x8(S\x8Sc\x8ce\x8en\x8ne\x8e)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n=\x8=<\x8<S\x8Sc\x8ce\x8en\x8ne\x8e·i\x8in\x8ns\x8st\x8ta\x8an\x8nc\x8ce\x8e·a\x8at\x8t·0\x80x\x8x2.2d.dd.d0.02.22.26.60\x80>\x8>])·→·int·:_\x8¶
931	············returns·for·a·body·the·count·of·interactions·(real·or·virtual)·with	931	············returns·for·a·body·the·count·of·interactions·(real·or·virtual)·with
932	············bodies·from·a·certain·subdomain,·interactions·with·subdomains	932	············bodies·from·a·certain·subdomain,·interactions·with·subdomains
933	············excluded.·Third·parameter·(scene·pointer)·can·be·left·to·default	933	············excluded.·Third·parameter·(scene·pointer)·can·be·left·to·default
934	············(equivalent·to·O._sceneObj).	934	············(equivalent·to·O._sceneObj).
Max diff block lines reached; 180750/190207 bytes (95.03%) of diff not shown.


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Offset 1, 23 lines modified		Offset 1, 23 lines modified
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Offset 1, 17 lines modified		Offset 1, 17 lines modified
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Offset 1, 31 lines modified		Offset 1, 31 lines modified
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Offset 1, 8 lines modified		Offset 1, 8 lines modified
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Offset 1, 34 lines modified		Offset 1, 34 lines modified
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