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1	·c2edd065faa58d00b79cbe1c7d872104·15811628·debug·optional·libyade-dbgsym_2024.02a-1_amd64.deb	1	·c2edd065faa58d00b79cbe1c7d872104·15811628·debug·optional·libyade-dbgsym_2024.02a-1_amd64.deb
2	·204440e62ea3315688942c06df154add·67973888·science·optional·libyade_2024.02a-1_amd64.deb	2	·204440e62ea3315688942c06df154add·67973888·science·optional·libyade_2024.02a-1_amd64.deb
3	·1d81c68aea17327050ba2639b272dac1·291948·python·optional·python3-yade_2024.02a-1_amd64.deb	3	·1d81c68aea17327050ba2639b272dac1·291948·python·optional·python3-yade_2024.02a-1_amd64.deb
4	·d1ecc2dfb008b39b58d5830045258196·8047564·doc·optional·yade-doc_2024.02a-1_all.deb
5	·~~559~~2bdefc968ea75~~7b134~~1a~~998aa7~~02e·~~241474~~0·~~sci~~ence·optional·yade_2024.02a-1_amd64.deb	4	·d04b26df158258eeed10ab7550f0a7ec·8045260·doc·optional·yade-doc_2024.02a-1_all.deb
		5	·01487d906648e768abaec843279072cf·2415012·science·optional·yade_2024.02a-1_amd64.deb


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1	-rw-r--r--···0········0········0········4·2024-02-10·08:19:39.000000·debian-binary	1	-rw-r--r--···0········0········0········4·2024-02-10·08:19:39.000000·debian-binary
2	-rw-r--r--···0········0········0·····~~9004~~·2024-02-10·08:19:39.000000·control.tar.xz	2	-rw-r--r--···0········0········0·····8996·2024-02-10·08:19:39.000000·control.tar.xz
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1	Package:·yade-doc	1	Package:·yade-doc
2	Source:·yade	2	Source:·yade
3	Version:·2024.02a-1	3	Version:·2024.02a-1
4	Architecture:·all	4	Architecture:·all
5	Maintainer:·Debian·Science·Maintainers·<debian-science-maintainers@lists.alioth.debian.org>	5	Maintainer:·Debian·Science·Maintainers·<debian-science-maintainers@lists.alioth.debian.org>
6	Installed-Size:·30969	6	Installed-Size:·30961
7	Depends:·libjs-sphinxdoc·(>=·7.2.2),·libjs-mathjax	7	Depends:·libjs-sphinxdoc·(>=·7.2.2),·libjs-mathjax
8	Recommends:·yade	8	Recommends:·yade
9	Section:·doc	9	Section:·doc
10	Priority:·optional	10	Priority:·optional
11	Multi-Arch:·foreign	11	Multi-Arch:·foreign
12	Homepage:·https://yade-dem.org/doc/	12	Homepage:·https://yade-dem.org/doc/
13	Description:·Platform·for·discrete·element·modeling.·Documentation	13	Description:·Platform·for·discrete·element·modeling.·Documentation


Offset 34, 54 lines modified		Offset 34, 54 lines modified
34	..·graphviz::	34	..·graphviz::
35	» :caption:·Inheritance·graph·of·Shape.	35	» :caption:·Inheritance·graph·of·Shape.

36	» digraph·Shape·{	36	» digraph·Shape·{
37	» » rankdir=RL;	37	» » rankdir=RL;
38	» » margin="0.2,0.05";	38	» » margin="0.2,0.05";
39	» » "Shape"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Shape"];	39	» » "Shape"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Shape"];
40	» » "Wall"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Wall"];	40	» » "DeformableElement"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableElement"];
41	» » "Wall"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	41	» » "DeformableElement"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
42	» » "GridConnection"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridConnection"];
43	» » "GridConnection"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
44	» » "~~Grid~~Node"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.~~Grid~~Node"];	42	» » "Node"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Node"];
45	» » "~~Grid~~Node"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];	43	» » "Node"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
46	» » "~~Lin4No~~de~~Tetra~~"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.~~Lin4No~~de~~Tetra~~"];	44	» » "Subdomain"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Subdomain"];
47	» » "~~Lin4No~~de~~Tetra~~"·->·"~~Defo~~rma~~bleEle~~ment"·[arrowsize=0.5,style="setlinewidth(0.5)"];	45	» » "Subdomain"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
48	» » "Facet"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Facet"];	46	» » "Facet"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Facet"];
49	» » "Facet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	47	» » "Facet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		48	» » "Sphere"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Sphere"];
		49	» » "Sphere"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
50	» » "Cylinder"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Cylinder"];	50	» » "ChainedCylinder"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ChainedCylinder"];
51	» » "Cylinder"·->·"~~Sph~~ere"·[arrowsize=0.5,style="setlinewidth(0.5)"];	51	» » "ChainedCylinder"·->·"Cylinder"·[arrowsize=0.5,style="setlinewidth(0.5)"];
52	» » "Lin4NodeTetra_Lin4NodeTetra_InteractionElement"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra_Lin4NodeTetra_InteractionElement"];
53	» » "Lin4NodeTetra_Lin4NodeTetra_InteractionElement"·->·"DeformableCohesiveElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
54	» » "Box"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Box"];	52	» » "Box"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Box"];
55	» » "Box"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	53	» » "Box"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
56	» » "DeformableElement"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableElement"];
57	» » "DeformableElement"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
58	» » "Le~~velS~~et"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Le~~velS~~et"];	54	» » "PFacet"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PFacet"];
59	» » "Le~~velS~~et"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	55	» » "PFacet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		56	» » "GridConnection"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridConnection"];
		57	» » "GridConnection"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		58	» » "FluidDomainBbox"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.FluidDomainBbox"];
		59	» » "FluidDomainBbox"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
60	» » "Tetra"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Tetra"];	60	» » "Tetra"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Tetra"];
61	» » "Tetra"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	61	» » "Tetra"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		62	» » "Cylinder"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Cylinder"];
		63	» » "Cylinder"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		64	» » "DeformableCohesiveElement"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableCohesiveElement"];
		65	» » "DeformableCohesiveElement"·->·"DeformableElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		66	» » "Wall"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Wall"];
		67	» » "Wall"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		68	» » "LevelSet"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.LevelSet"];
		69	» » "LevelSet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		70	» » "Lin4NodeTetra"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra"];
		71	» » "Lin4NodeTetra"·->·"DeformableElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
62	» » "Clump"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Clump"];	72	» » "Clump"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Clump"];
63	» » "Clump"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	73	» » "Clump"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
64	» » "~~Spher~~e"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.~~Spher~~e"];	74	» » "GridNode"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridNode"];
65	» » "~~Spher~~e"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	75	» » "GridNode"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		76	» » "Lin4NodeTetra_Lin4NodeTetra_InteractionElement"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra_Lin4NodeTetra_InteractionElement"];
		77	» » "Lin4NodeTetra_Lin4NodeTetra_InteractionElement"·->·"DeformableCohesiveElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
66	» » "PotentialParticle"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PotentialParticle"];	78	» » "PotentialParticle"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PotentialParticle"];
67	» » "PotentialParticle"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	79	» » "PotentialParticle"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
68	» » "Subdomain"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Subdomain"];
69	» » "Subdomain"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
70	» » "DeformableCohesiveElement"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableCohesiveElement"];
71	» » "DeformableCohesiveElement"·->·"DeformableElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
72	» » "PFacet"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PFacet"];
73	» » "PFacet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
74	» » "ChainedCylinder"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ChainedCylinder"];
75	» » "ChainedCylinder"·->·"Cylinder"·[arrowsize=0.5,style="setlinewidth(0.5)"];
76	» » "FluidDomainBbox"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.FluidDomainBbox"];
77	» » "FluidDomainBbox"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
78	» » "Node"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Node"];
79	» » "Node"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
80	» }	80	» }

81	..·autoclass::·Shape	81	..·autoclass::·Shape
82	» :members:	82	» :members:
83	» :undoc-members:	83	» :undoc-members:
84	» :inherited-members:	84	» :inherited-members:

Offset 195, 22 lines modified		Offset 195, 22 lines modified
195	..·graphviz::	195	..·graphviz::
196	» :caption:·Inheritance·graph·of·State.	196	» :caption:·Inheritance·graph·of·State.

197	» digraph·State·{	197	» digraph·State·{
198	» » rankdir=RL;	198	» » rankdir=RL;
199	» » margin="0.2,0.05";	199	» » margin="0.2,0.05";
200	» » "State"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.State"];	200	» » "State"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.State"];
201	» » "ChainedState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ChainedState"];
202	» » "ChainedState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];
203	» » "ThermalState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ThermalState"];
204	» » "ThermalState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];
205	» » "CpmState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.CpmState"];	201	» » "CpmState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.CpmState"];
206	» » "CpmState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];	202	» » "CpmState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		203	» » "ChainedState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ChainedState"];
		204	» » "ChainedState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];
207	» » "JCFpmState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.JCFpmState"];	205	» » "JCFpmState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.JCFpmState"];
208	» » "JCFpmState"·->·"ThermalState"·[arrowsize=0.5,style="setlinewidth(0.5)"];	206	» » "JCFpmState"·->·"ThermalState"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		207	» » "ThermalState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ThermalState"];
		208	» » "ThermalState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];
209	» » "WireState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.WireState"];	209	» » "WireState"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.WireState"];
210	» » "WireState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];	210	» » "WireState"·->·"State"·[arrowsize=0.5,style="setlinewidth(0.5)"];
211	» }	211	» }

212	..·autoclass::·State	212	..·autoclass::·State
213	» :members:	213	» :members:
214	» :undoc-members:	214	» :undoc-members:
Offset 251, 54 lines modified		Offset 251, 54 lines modified
251	..·graphviz::	251	..·graphviz::
252	» :caption:·Inheritance·graph·of·Material.	252	» :caption:·Inheritance·graph·of·Material.

253	» digraph·Material·{	253	» digraph·Material·{
254	» » rankdir=RL;	254	» » rankdir=RL;
255	» » margin="0.2,0.05";	255	» » margin="0.2,0.05";
256	» » "Material"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Material"];	256	» » "Material"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Material"];
257	» » "LinIsoElastMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.LinIsoElastMat"];
258	» » "LinIsoElastMat"·->·"DeformableElementMaterial"·[arrowsize=0.5,style="setlinewidth(0.5)"];
259	» » "ElastMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ElastMat"];
260	» » "ElastMat"·->·"Material"·[arrowsize=0.5,style="setlinewidth(0.5)"];
261	» » "ViscElMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ViscElMat"];
262	» » "ViscElMat"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
263	» » "WireMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.WireMat"];
264	» » "WireMat"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
265	» » "InelastCohFrictMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.InelastCohFrictMat"];
266	» » "InelastCohFrictMat"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
267	» » "ViscElCapMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ViscElCapMat"];
268	» » "ViscElCapMat"·->·"ViscElMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
269	» » "JCFpmMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.JCFpmMat"];	257	» » "JCFpmMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.JCFpmMat"];
270	» » "JCFpmMat"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];	258	» » "JCFpmMat"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
271	» » "~~CohFrict~~Mat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.~~CohFrict~~Mat"];	259	» » "ViscElCapMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ViscElCapMat"];
272	» » "~~CohFrict~~Mat"·->·"~~Fri~~ctMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];	260	» » "ViscElCapMat"·->·"ViscElMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
273	» » "CpmMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.CpmMat"];	261	» » "CpmMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.CpmMat"];
274	» » "CpmMat"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];	262	» » "CpmMat"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
275	» » "~~Luding~~Mat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.~~Luding~~Mat"];	263	» » "ViscElMat"·[shape="box",fontsize=8,style="setlinewidth(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ViscElMat"];
276	» » "~~Luding~~Mat"·->·"~~Materi~~al"·[arrowsize=0.5,style="setlinewidth(0.5)"];	264	» » "ViscElMat"·->·"FrictMat"·[arrowsize=0.5,style="setlinewidth(0.5)"];
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Offset 242, 20 lines modified		Offset 242, 20 lines modified
242	(1000,True)·will·run·and·wait.·To·stop·at·absolute·step·number,·O.stopAtIter	242	(1000,True)·will·run·and·wait.·To·stop·at·absolute·step·number,·O.stopAtIter
243	can·be·set·and·O.run()·called·normally.	243	can·be·set·and·O.run()·called·normally.
244	Yade·[12]:·O.run()	244	Yade·[12]:·O.run()

245	Yade·[13]:·O.pause()	245	Yade·[13]:·O.pause()

246	Yade·[14]:·O.iter	246	Yade·[14]:·O.iter
247	Out[14]:·33656	247	Out[14]:·2362

248	Yade·[15]:·O.run(100000,True)	248	Yade·[15]:·O.run(100000,True)

249	Yade·[16]:·O.iter	249	Yade·[16]:·O.iter
250	Out[16]:·133656	250	Out[16]:·102362

251	Yade·[17]:·O.stopAtIter=500000	251	Yade·[17]:·O.stopAtIter=500000

252	Yade·[18]:·O.run()	252	Yade·[18]:·O.run()

253	Yade·[19]:·O.wait()	253	Yade·[19]:·O.wait()

Offset 334, 15 lines modified		Offset 334, 15 lines modified
334	operating·on·the·data.·In·programming,·this·is·known·as·v\x8vi\x8is\x8si\x8it\x8to\x8or\x8r·pattern·(as	334	operating·on·the·data.·In·programming,·this·is·known·as·v\x8vi\x8is\x8si\x8it\x8to\x8or\x8r·pattern·(as
335	functional·components·“visit”·the·data,·without·being·bound·to·them	335	functional·components·“visit”·the·data,·without·being·bound·to·them
336	explicitly).	336	explicitly).
337	Entire·simulation,·i.e.·both·data·and·functions,·are·stored·in·a·single·Scene	337	Entire·simulation,·i.e.·both·data·and·functions,·are·stored·in·a·single·Scene
338	object.·It·is·accessible·through·the·_\x8O_\x8m_\x8e_\x8g_\x8a·class·in·python·(a·singleton),·which	338	object.·It·is·accessible·through·the·_\x8O_\x8m_\x8e_\x8g_\x8a·class·in·python·(a·singleton),·which
339	is·by·default·stored·in·the·O·global·variable:	339	is·by·default·stored·in·the·O·global·variable:
340	Yade·[28]:·O.bodies·······#·some·data·components	340	Yade·[28]:·O.bodies·······#·some·data·components
341	Out[28]:·<yade.wrapper.BodyContainer·at·0x7f~~7a264~~ff5a0>	341	Out[28]:·<yade.wrapper.BodyContainer·at·0x7f9e0fbff4c0>

342	Yade·[29]:·len(O.bodies)··#·there·are·no·bodies·as·of·yet	342	Yade·[29]:·len(O.bodies)··#·there·are·no·bodies·as·of·yet
343	Out[29]:·0	343	Out[29]:·0

344	Yade·[30]:·O.engines······#·functional·components,·empty·at·the·moment	344	Yade·[30]:·O.engines······#·functional·components,·empty·at·the·moment
345	Out[30]:·[]	345	Out[30]:·[]
346	\x8\x8\x8·D\x8Da\x8at\x8ta\x8a·c\x8co\x8om\x8mp\x8po\x8on\x8ne\x8en\x8nt\x8ts\x8s_\x8?\x8¶·\x8\x8\x8	346	\x8\x8\x8·D\x8Da\x8at\x8ta\x8a·c\x8co\x8om\x8mp\x8po\x8on\x8ne\x8en\x8nt\x8ts\x8s_\x8?\x8¶·\x8\x8\x8
Offset 385, 17 lines modified		Offset 385, 17 lines modified
385	practical;·there·are·utility·functions·defined·to·create·them·with·all	385	practical;·there·are·utility·functions·defined·to·create·them·with·all
386	necessary·ingredients.·For·example,·we·can·create·sphere·particle·using	386	necessary·ingredients.·For·example,·we·can·create·sphere·particle·using
387	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e:	387	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e:
388	Yade·[31]:·s=utils.sphere(center=[0,0,0],radius=1)	388	Yade·[31]:·s=utils.sphere(center=[0,0,0],radius=1)

389	Yade·[32]:·s.shape,·s.state,·s.mat,·s.bound	389	Yade·[32]:·s.shape,·s.state,·s.mat,·s.bound
390	Out[32]:	390	Out[32]:
391	(<Sphere·instance·at·0x~~3679b1~~0>,	391	(<Sphere·instance·at·0x44b2720>,
392	·<State·instance·at·0x~~12d89c~~0>,	392	·<State·instance·at·0x44cb610>,
393	·<FrictMat·instance·at·0x35~~df1a~~0>,	393	·<FrictMat·instance·at·0x45ca310>,
394	·None)	394	·None)

395	Yade·[33]:·s.state.pos	395	Yade·[33]:·s.state.pos
396	Out[33]:·Vector3(0,0,0)	396	Out[33]:·Vector3(0,0,0)

397	Yade·[34]:·s.shape.radius	397	Yade·[34]:·s.shape.radius
398	Out[34]:·1.0	398	Out[34]:·1.0
Offset 471, 29 lines modified		Offset 471, 29 lines modified
471	_\x8[_\x8__\x8i_\x8m_\x8a_\x8g_\x8e_\x8s_\x8/_\x8i_\x8n_\x8t_\x8e_\x8r_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n_\x8-_\x8c_\x8l_\x8a_\x8s_\x8s_\x8e_\x8s_\x8._\x8p_\x8n_\x8g_\x8]	471	_\x8[_\x8__\x8i_\x8m_\x8a_\x8g_\x8e_\x8s_\x8/_\x8i_\x8n_\x8t_\x8e_\x8r_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n_\x8-_\x8c_\x8l_\x8a_\x8s_\x8s_\x8e_\x8s_\x8._\x8p_\x8n_\x8g_\x8]
472	Examples·of·concrete·classes·that·might·be·used·to·describe·an·_\x8I_\x8n_\x8t_\x8e_\x8r_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n:	472	Examples·of·concrete·classes·that·might·be·used·to·describe·an·_\x8I_\x8n_\x8t_\x8e_\x8r_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n:
473	_\x8I_\x8G_\x8e_\x8o_\x8m,·_\x8G_\x8e_\x8n_\x8e_\x8r_\x8i_\x8c_\x8S_\x8p_\x8h_\x8e_\x8r_\x8e_\x8s_\x8C_\x8o_\x8n_\x8t_\x8a_\x8c_\x8t,·_\x8P_\x8o_\x8l_\x8y_\x8h_\x8e_\x8d_\x8r_\x8a_\x8G_\x8e_\x8o_\x8m,·_\x8C_\x8y_\x8l_\x8S_\x8c_\x8G_\x8e_\x8o_\x8m,·_\x8I_\x8P_\x8h_\x8y_\x8s,·_\x8N_\x8o_\x8r_\x8m_\x8P_\x8h_\x8y_\x8s,	473	_\x8I_\x8G_\x8e_\x8o_\x8m,·_\x8G_\x8e_\x8n_\x8e_\x8r_\x8i_\x8c_\x8S_\x8p_\x8h_\x8e_\x8r_\x8e_\x8s_\x8C_\x8o_\x8n_\x8t_\x8a_\x8c_\x8t,·_\x8P_\x8o_\x8l_\x8y_\x8h_\x8e_\x8d_\x8r_\x8a_\x8G_\x8e_\x8o_\x8m,·_\x8C_\x8y_\x8l_\x8S_\x8c_\x8G_\x8e_\x8o_\x8m,·_\x8I_\x8P_\x8h_\x8y_\x8s,·_\x8N_\x8o_\x8r_\x8m_\x8P_\x8h_\x8y_\x8s,
474	_\x8N_\x8o_\x8r_\x8m_\x8S_\x8h_\x8e_\x8a_\x8r_\x8P_\x8h_\x8y_\x8s,·_\x8F_\x8r_\x8i_\x8c_\x8t_\x8P_\x8h_\x8y_\x8s._\x8¶	474	_\x8N_\x8o_\x8r_\x8m_\x8S_\x8h_\x8e_\x8a_\x8r_\x8P_\x8h_\x8y_\x8s,·_\x8F_\x8r_\x8i_\x8c_\x8t_\x8P_\x8h_\x8y_\x8s._\x8¶
475	Suppose·now·interactions·have·been·already·created.·We·can·access·them·by·the	475	Suppose·now·interactions·have·been·already·created.·We·can·access·them·by·the
476	id·pair:	476	id·pair:
477	Yade·[41]:·O.interactions[0,1]	477	Yade·[41]:·O.interactions[0,1]
478	Out[41]:·<Interaction·instance·at·0x~~359~~aa20>	478	Out[41]:·<Interaction·instance·at·0x44da4a0>

479	Yade·[42]:·O.interactions[1,0]·····#·order·of·ids·is·not·important	479	Yade·[42]:·O.interactions[1,0]·····#·order·of·ids·is·not·important
480	Out[42]:·<Interaction·instance·at·0x~~359~~aa20>	480	Out[42]:·<Interaction·instance·at·0x44da4a0>

481	Yade·[43]:·i=O.interactions[0,1]	481	Yade·[43]:·i=O.interactions[0,1]

482	Yade·[44]:·i.id1,i.id2	482	Yade·[44]:·i.id1,i.id2
483	Out[44]:·(0,·1)	483	Out[44]:·(0,·1)

484	Yade·[45]:·i.geom	484	Yade·[45]:·i.geom
485	Out[45]:·<ScGeom·instance·at·0x359e6e0>	485	Out[45]:·<ScGeom·instance·at·0x45aed40>

486	Yade·[46]:·i.phys	486	Yade·[46]:·i.phys
487	Out[46]:·<FrictPhys·instance·at·0x~~362f6c~~0>	487	Out[46]:·<FrictPhys·instance·at·0x45a2aa0>

488	Yade·[47]:·O.interactions[100,10111]·····#·asking·for·non·existing·interaction	488	Yade·[47]:·O.interactions[100,10111]·····#·asking·for·non·existing·interaction
489	throws·exception	489	throws·exception
490	[0;31m-------------------------------------------------------------------------	490	[0;31m-------------------------------------------------------------------------
491	--\x1b[0m	491	--\x1b[0m
492	[0;31mIndexError\x1b[0m································Traceback·(most·recent·call	492	[0;31mIndexError\x1b[0m································Traceback·(most·recent·call
493	last)	493	last)


Offset 307, 40 lines modified		Offset 307, 38 lines modified
307	^(\x7:@\x1eꚏyf\xcR\x11ͽJr(\x13MӁfg=a\xbFt'ʞ,\x10x6)pX^\xe\x1d568瑟r7s\x18-\x1f*\x17})^le^\x14\xbE%{\x5IGc)27~6'_k>hEK\x103k^\x13\x14)4ts]\x12[f}B~~jm߼\x11ZuIRL~ǒ\xdE\x14ɟ\x193kM\x7;d.\x1eM\x3<_"~~	307	^(\x7:@\x1eꚏyf\xcR\x11ͽJr(\x13MӁfg=a\xbFt'ʞ,\x10x6)pX^\xe\x1d568瑟r7s\x18-\x1f*\x17})^le^\x14\xbE%{\x5IGc)27~6'_k>hEK\x103k^\x13\x14)4ts]\x12[f}Bjm߼\x11ZuIRL~ǒ\xdE\x14ɟ\x193kM\x7;d.\x1eM\x3<_"
308	\x1f» N>ܗ%\x15Υv^_h	308	\x1f» N>ܗ%\x15Υv^_h

309	oNn[m2ݏq\x1aCK(Q\|[\Y\xfxH\x12G\+8nCvb=\x1d6_Ìt1\x1d\xcbO\x11eaX#4MdKӼni41Fv\x6Kg@nd;lZ·\x1bkeF;5sh=fښ\x13H`;ؘն0#G6Di`˿k<.t`ύ?» 3\xb_V{f~~^ii%\x17\x3ɭ» N\x0e\x1aq\x1eG':[\x17:խZ}fd\xcn;\ISZHAjgNk1s\x3\x13\x1e3Xi[~~\x16̅\x5ϟeɍMdyXZn\xb)\x18{+@.~һ>gAߗLo۵\xfS\xfj\x16	309	oNn[m2ݏq\x1aCK(Q\|[\Y\xfxH\x12G\+8nCvb=\x1d6_Ìt1\x1d\xcbO\x11eaX#4MdKӼni41Fv\x6Kg@nd;lZ·\x1bkeF;5sh=fښ\x13H`;ؘն0#G6Di`˿k<.t`ύ?» 3\xb_V{f^ii%\x17\x3ɭ» N\x0e\x1aq\x1eG':[\x17:խZ}fd\xcn;\ISZHAjgNk1s\x3\x13\x1e3Xi[\x16̅\x5ϟeɍMdyXZn\xb)\x18{+@.~һ>gAߗLo۵\xfS\xfj\x16
310	\xfJ-(k=bѿ`FhB3DLLԮam)o)&+]\xcE֯Ɨ~~\|\|G\x16?#/"f滟eY]RȺ9\x6ȴ\x14ur{[\xe<lo\f\x1cnZTa]:\x1d>\xfK\xfm\x1aS\xf\x15b3ѺnHu\x1dw-k\x1fTY\x7E˶nU0"%\x53OL\x1dZ>b~~	310	\xfJ-(k=bѿ`FhB3DLLԮam)o)&+]\xcE֯Ɨ\|\|G\x16?#/"f滟eY]RȺ9\x6ȴ\x14ur{[\xe<lo\f\x1cnZTa]:\x1d>\xfK\xfm\x1aS\xf\x15b3ѺnHu\x1dw-k\x1fTY\x7E˶nU0"%\x53OL\x1dZ>b
311	\xe`\xdhn\|s/ŝn0\xbo\x19G!:\x16» ܈@q\x13_nL\x1bW\x11qkdh6o/\x3\x14R-aP'q\xf&Ժ\x12UXea77fE~\xb'߹\x116\xegҌmMq\xd.(9ц4yo%JF\xfy	311	\xe`\xdhn\|s/ŝn0\xbo\x19G!:\x16» ܈@q\x13_nL\x1bW\x11qkdh6o/\x3\x14R-aP'q\xf&Ժ\x12UXea77fE~\xb'߹\x116\xegҌmMq\xd.(9ц4yo%JF\xfy
312	scft\x19vb<)ⰹ̩㘥[3NnI~;v:<_ga&<a\x1eqQ1MQ&r\x1daR\x3~~a{^~hnqB;\x8*nr\x109~~	312	scft\x19vb<)ⰹ̩㘥[3NnI~;v:<_ga&<a\x1eqQ1MQ&r\x1daR\x3a{^~hnqB;\x8*nr\x109
313	,+[fQ\x1d8P_z,}\x1f&Ʋ\x1e/+CS» &Zh%uHuaN=:f֋sf\xd;ϥd\x17fVdr;V#^N~1\x126gN5O.Ƀ4\x7&v,vru@NfNaXGO_W=» S\x17d\x1ee3s(y\x0O~ѿLߕ<hNڻcg\x1b\xd\xbOb\x1e+[GW$S\x3$\xb\x1aC;n^shd\xeW&\_FaHy·_i\x1a֞'O=z\x8Z\ŗK+v#juc.ezf\\x15t·:\|͔'\x18xZw\x17^R\x16uao6)ӯLւ\x8ַ+k''\x1b\x1e?38qZ)gr`ެͱ9C\xf]EjvU?Ue\x19\x15޲Ncyr9\x1a"Ea+ݻˣÚ1K\x16$ajޮ֙\xcT\x1dfE߃Vl)ݙaթd8\x1da\x6'>7+O]2Nv\x195GRd_\x1ezl\xbMX\x5\x0NrӉ\x5\|ݟDA\x17Cx\x1bll2y\\x1fH<"7<ÒtiBk\x1c?\x1ccާ\xd}6cRxT7cğ\x1fqz6{\xfrr\x14Ot<en91\x13fm#\x17BLt0b¿yWKP,{QwN<f˰y/3aڕ\>jM\x7''_h\|ʄl~\x11JCӻöly}ذ=nyL\xf\x3\x13C,Bhܥ\x1folׯL[0\x6\x1c*\x13\xe8Ѻ\x19wÅo\x6\xeL\x3ajC6i8Bm.L/\xe;kn^A\x1e?m2ǔvW\xdn^ze+3z;zj\x19EjòETy}\x17խ\x37,\x1a\x18/H٥\x1efAڲth\x1b$Z͟\x1e<,H%>9џM6K26(&[.M\x19v\x15Nl\xd\xfȶ\x16\x1a,yyE\x13d)Wwn\xf\x18;0ڂYs]ZrfǞ_eb\x1fy;anUo'W\xd7Ϸ\x13'\x18ν\x1fo'+ߺ=o4쨃6\x1e\x6<fcz:L\x1cYla\x16rLxp2qCO2\x15}yվ\x1c[\xby,8.U\x7#\x4vUJxE3mZK\x04SE\|S'trŊ-fJYbfE`\x1bO)>ah]ټ[BRnk]'\x15N\|c$%v(\x1dOkIkog\x6{f!fކZmS$f&kiּ^kWR݂fmn\x8s=\x1fˬ%Žb$v\x1b0R"[x;_NOڳj\x1f#\x1eV-Fb;M}\x1fW(RM+Lƾݣy\x1f\x17s>\|g3}y:yvkƾ:EcQʽOR\xcNO6i\x1a?y!6\x6~·?q\x17\x4鹝\xbVkvi9\x15>M7Zl(Uȣ3_6\x15\x15Ro_6BN{o[7V\x18f٬\x8پdVl(\xdK-Ӳ\x1bsIqin?ثwjt[E=5x,\xbxs{U\x15Cڗ{jih\xc\x6c6(H-c\xeĮqe?\\x14{Nḍ\x13wab4Գhe\x3q\x1c\x1ȩ\xb\x5\x3\x6!dgz\x1e\xb;i\x1e1S\x16?؇M7\x14aD_&\x15ChE'8\x13ݛ"\x1am\x35~\x17\x68_pZhIeDoW\ȗn<0\x13Br[=/b_߇eOkV+/~~[$˲~~O{o&~~7ۛ~~Vm	313	,+[fQ\x1d8P_z,}\x1f&Ʋ\x1e/+CS» &Zh%uHuaN=:f֋sf\xd;ϥd\x17fVdr;V#^N~1\x126gN5O.Ƀ4\x7&v,vru@NfNaXGO_W=» S\x17d\x1ee3s(y\x0O~ѿLߕ<hNڻcg\x1b\xd\xbOb\x1e+[GW$S\x3$\xb\x1aC;n^shd\xeW&\_FaHy·_i\x1a֞'O=z\x8Z\ŗK+v#juc.ezf\\x15t·:\|͔'\x18xZw\x17^R\x16uao6)ӯLւ\x8ַ+k''\x1b\x1e?38qZ)gr`ެͱ9C\xf]EjvU?Ue\x19\x15޲Ncyr9\x1a"Ea+ݻˣÚ1K\x16$ajޮ֙\xcT\x1dfE߃Vl)ݙaթd8\x1da\x6'>7+O]2Nv\x195GRd_\x1ezl\xbMX\x5\x0NrӉ\x5\|ݟDA\x17Cx\x1bll2y\\x1fH<"7<ÒtiBk\x1c?\x1ccާ\xd}6cRxT7cğ\x1fqz6{\xfrr\x14Ot<en91\x13fm#\x17BLt0b¿yWKP,{QwN<f˰y/3aڕ\>jM\x7''_h\|ʄl~\x11JCӻöly}ذ=nyL\xf\x3\x13C,Bhܥ\x1folׯL[0\x6\x1c*\x13\xe8Ѻ\x19wÅo\x6\xeL\x3ajC6i8Bm.L/\xe;kn^A\x1e?m2ǔvW\xdn^ze+3z;zj\x19EjòETy}\x17խ\x37,\x1a\x18/H٥\x1efAڲth\x1b$Z͟\x1e<,H%>9џM6K26(&[.M\x19v\x15Nl\xd\xfȶ\x16\x1a,yyE\x13d)Wwn\xf\x18;0ڂYs]ZrfǞ_eb\x1fy;anUo'W\xd7Ϸ\x13'\x18ν\x1fo'+ߺ=o4쨃6\x1e\x6<fcz:L\x1cYla\x16rLxp2qCO2\x15}yվ\x1c[\xby,8.U\x7#\x4vUJxE3mZK\x04SE\|S'trŊ-fJYbfE`\x1bO)>ah]ټ[BRnk]'\x15N\|c$%v(\x1dOkIkog\x6{f!fކZmS$f&kiּ^kWR݂fmn\x8s=\x1fˬ%Žb$v\x1b0R"[x;_NOڳj\x1f#\x1eV-Fb;M}\x1fW(RM+Lƾݣy\x1f\x17s>\|g3}y:yvkƾ:EcQʽOR\xcNO6i\x1a?y!6\x6~·?q\x17\x4鹝\xbVkvi9\x15>M7Zl(Uȣ3_6\x15\x15Ro_6BN{o[7V\x18f٬\x8پdVl(\xdK-Ӳ\x1bsIqin?ثwjt[E=5x,\xbxs{U\x15Cڗ{jih\xc\x6c6(H-c\xeĮqe?\\x14{Nḍ\x13wab4Գhe\x3q\x1c\x1ȩ\xb\x5\x3\x6!dgz\x1e\xb;i\x1e1S\x16?؇M7\x14aD_&\x15ChE'8\x13ݛ"\x1am\x35~\x17\x6*8_pZhIeDoW\ȗn<0\x13Br[=/b_߇eO.W+/d..v.۳Odfn&w$;..0(VZ-va뷊$R!@>uHQ(UJ}zlISh.
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345	~~EbL!noZCT8FvbTD..mb~~:~~~72<:W~~W~~%V2s..[~~..~~qzV.9O/hnʖ~~<~~:男n̾Wu5NAb..i܌]!9"G~~.~~i.}q.M>%1ܚ.R퐩.5.Hc-4ά!j!^D#g~~~H`~~.VzQ.V~~.Yr~~z{N~~.r]~~2t.Zl)9~~`~~.>.#.·'K.ޣo^~{ܽOj8AUP~.>_?\|~~\|?~~.,D.yq%.\|}.?.`<zmk~~4.klZj~~ݦ.%mOL+4V~~.~~¥%Zqƾ`..{.~~,~~yqԁ`}\co<t..'.K.,Մ.-]_.CRZ.3~~	329	.`.:^h.W.PZ@T;婮</Z!Z4L.ժ.SP^.x.nx)cL(FA!Bnԟ"lߖA_LǨ..r·V~y.s.ji..r϶0]LI:eʄU.`GrG9.+R%m.NH.X9n@m<qb+c\|Hz&eN.,l䩆» .ўfɑhԢ.e4$len&_.ٔ2fs.,I/;%e.xZlYk$Fq.l
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		331	x\x11-ֺ_2_+?\x1b\x0e6\x4(\x1ag5PTԠ/[`\\x19\+b،UG,/O9G\xcR··՛I\x15u\x6#\x1bq\x6ZNͶ>MZE!PΞIq\x1b,P\x124L\x7ULTX\x1f$~H\x19^h]Cvd6q\x3z\xd7B}\x14+'Rfx^uS<ER\x15kXN\xf$q!tn\x7^WN7\x11\x7-u(Ďj7G?`Ƴ\x1e9ǰ>-Ow/WA\x11H\x1a(\x1b5Nr\|\x58&z\x11IswWς"\x4lla߁\x1a\x18\x13aT$:,\xdHє\x18ʔ\x7a.\x1bǩRGYm6hכ\x19\x15\x6/d·p\x1aFJv\x0-(M\|~u*\x17X:VDTC=74RT]\x1c\x18_o» ٪R-U\x13\x1eN/RoYt(kzfz+L\x1a`\\x1ex=a\x10\x13+\x3\|\x5hHr.?\x0m;V9-\x1fQ\x1b\x18͆˅<n\x3x֔@\|?23s5\x1bHpdW\x18\&\x1eY2z>,\x3M#"jQ?9,#\x1aqQ壬\xdRj\x4&>\x17Q̮a'a$/\x15?!z!X\xb3kyLV
		332	O'`}» rK
		333	mgJ0XP5RX4؇އչ~o'\x092!V»\xc"v&\x17iU7<'gap{·\xf:\x3x
		334	}\xbe3\x5\|K-»So^Vo.}t[%ڂnz5=e{n*
		335	o\xf8\x0_ѱ\x5Ja-\x1e\x5\x19}03q\x13s`otDM_y\x13O\|ꇿӾ!4+Syjÿt@'^+":XI]
		336	\x1a\xcfXex`Rq>J$DH2\x17\x17^^K"*\x1b45\x10\x12th?AS\xc%\x6`$5ޝs仉ύ~\x1a
		337	gڇW[SOE+\x1b\x10x» \x16\x15m\xc[\x18O\x1ax}^ĩ\xf8\x0_x`iV\x1f0Agp,{@_%v:pb\x17Q4=<ԃ$2FuP\x5i&/%Ք\x176!g;+ϻsv郝+сa\x1dڸh\x1f\x15Ww3\x8;e{v\x1f3ܵ]y#7eXK·YI/3<Y-N힔9ȥ\xcw\x13G3zTSd>]NN;\x6\x1f\xc\x1e3\x6,\x1c*]
		338	ڣM\x1e;ℾH)\x1a`ދ7z\x12\xdtp\x4\x7M\x19{3Y@iDs:P\x14\x1b\x12?8'vN)x7uNoV\x11LLyƫ<\\x1f֟vSO^c-һL\\x1eXI)iz\x1dxŨ\x17\x1ax\x1dsnjdʵ09DR<\x12\x4۳\x0)^)\x17\xb\x1b\x7VQb<\x1bA&p0'\x16\xdi\xcBf\x1bW\<?Wl8HW\x14\x3\x10\x5պ
		339	I욚Rc=s\xeLk\x7N}tͫC1Ox>`\x16F\xeMtW~lG\x4\x1d+GKmdQ\xd\x112\x1cM\x5p)A{\x4ʅ\x17f?#Kd,%#V(L\x17E»lJ4uF\xb6M:)(G\x16}g\|[nJ1)G:ڒ
		340	20uVj܌]7CXI#{lf\xdQ8{1UD\x10Tyf92k0Ќjc\x13:\xd\x12ǈ<\xbqoF\xdM\x11Ӄdq̥iʜ·\x1f"e[\xdVe-\x13*OHZ['\xb\x12*Z\x8s"%10G·b;l&C@q
		341	EbL!\x0\x1a\x17\x1f:\x18\x12Nˈ?\x153d\xfi/Ĩ\x1a*\x1e0N>Y\x1e>4
		342	\x18]d/ʔ\x19U*<4KEShTj'KE\xc]&/w.#S\x1a:xue_b%K(n3GUa\x11\x1dW\x17j%Dz2یVlSzNy
		343	_f/}7\x5u\x1bau1R4nF.\x10Vek\x1c#?ʹ>ø&wnsUvT\x1a\x0$sjg\x16\x1ag\x10\x10V/3D$0+t=;Q\x0V\x7Yrz{N\x13r]2t\x16Zl)9`Wnޢ\x13\x3\x1f·'K\x12ޣoN~;ܽMj8AUP~\x1a޾Ƿ_ow\|w\x1fю./\xe\x4Û\xf;\x3Gm\x17xmx_W߸Թޙ~Ҡ-!ߑi%*\x1aCd\x1fCK?N7\x1e+\x1fl\6\x1eO\x1d\x8&5\x3{CǞ1\x1fp>\x12[M\|\xf\x5/)%Ȩ?


Offset 1061, 19 lines modified		Offset 1061, 19 lines modified
1061	<wire>0</wire>	1061	<wire>0</wire>
1062	<highlight>0</highlight>	1062	<highlight>0</highlight>
1063	</px>	1063	</px>
1064	</subD>	1064	</subD>
1065	<tags·class_id="6"·tracking_level="0"·version="0">	1065	<tags·class_id="6"·tracking_level="0"·version="0">
1066	<count>5</count>	1066	<count>5</count>
1067	<item_version>0</item_version>	1067	<item_version>0</item_version>
1068	<item>author=~(pbuilder1@ionos1-amd64)</item>	1068	<item>author=second~user~(pbuilder2@i-capture-the-hostname)</item>
1069	<item>isoTime=20240~~629~~T~~0041~~57</item>	1069	<item>isoTime=20250802T195759</item>
1070	<item>id=20240629T004157p2264848</item>
1071	<item>d.id=20240629T004157p2264848</item>
1072	<item>id.d=20240~~629~~T~~0041~~57p~~22648~~48</item>	1070	<item>id=20250802T195759p3687441</item>
		1071	<item>d.id=20250802T195759p3687441</item>
		1072	<item>id.d=20250802T195759p3687441</item>
1073	</tags>	1073	</tags>
1074	<engines·class_id="7"·tracking_level="0"·version="0">	1074	<engines·class_id="7"·tracking_level="0"·version="0">
1075	<count>1</count>	1075	<count>1</count>
1076	<item_version>1</item_version>	1076	<item_version>1</item_version>
1077	<item·class_id="8"·tracking_level="0"·version="1">	1077	<item·class_id="8"·tracking_level="0"·version="1">
1078	<px·class_id="10"·class_name="yade::GravityEngine"·tracking_level="1"	1078	<px·class_id="10"·class_name="yade::GravityEngine"·tracking_level="1"
1079	version="0"·object_id="_4">	1079	version="0"·object_id="_4">
Offset 1792, 15 lines modified		Offset 1792, 15 lines modified
1792	Yade·[42]:·ld=LawDispatcher([Law2_ScGeom_CpmPhys_Cpm()])	1792	Yade·[42]:·ld=LawDispatcher([Law2_ScGeom_CpmPhys_Cpm()])

1793	Yade·[43]:·ld.dispMatrix()	1793	Yade·[43]:·ld.dispMatrix()
1794	Out[43]:·{('GenericSpheresContact',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm'}	1794	Out[43]:·{('GenericSpheresContact',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm'}

1795	#·see·how·the·entry·for·ScGridCoGeom·will·be·filled·after·this·request	1795	#·see·how·the·entry·for·ScGridCoGeom·will·be·filled·after·this·request
1796	Yade·[44]:·ld.dispFunctor(ScGridCoGeom(),CpmPhys())	1796	Yade·[44]:·ld.dispFunctor(ScGridCoGeom(),CpmPhys())
1797	Out[44]:·<Law2_ScGeom_CpmPhys_Cpm·instance·at·0x~~364ef3~~0>	1797	Out[44]:·<Law2_ScGeom_CpmPhys_Cpm·instance·at·0x44a44d0>

1798	Yade·[45]:·ld.dispMatrix()	1798	Yade·[45]:·ld.dispMatrix()
1799	Out[45]:	1799	Out[45]:
1800	{('GenericSpheresContact',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm',	1800	{('GenericSpheresContact',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm',
1801	·('ScGridCoGeom',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm'}	1801	·('ScGridCoGeom',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm'}
1802	\x8\x8\x8·O\x8Op\x8pe\x8en\x8nG\x8GL\x8L·f\x8fu\x8un\x8nc\x8ct\x8to\x8or\x8rs\x8s_\x8?\x8¶·\x8\x8\x8	1802	\x8\x8\x8·O\x8Op\x8pe\x8en\x8nG\x8GL\x8L·f\x8fu\x8un\x8nc\x8ct\x8to\x8or\x8rs\x8s_\x8?\x8¶·\x8\x8\x8
1803	OpenGL·rendering·is·being·done·also·by·1D·functors·(dispatched·for·the·type·to	1803	OpenGL·rendering·is·being·done·also·by·1D·functors·(dispatched·for·the·type·to
Offset 1932, 39 lines modified		Offset 1932, 39 lines modified
1932	Yade·[52]:·O.run(50);·O.wait()	1932	Yade·[52]:·O.run(50);·O.wait()

1933	Yade·[53]:·yade.timing.stats()	1933	Yade·[53]:·yade.timing.stats()
1934	Name····················································Count	1934	Name····················································Count
1935	Time············Rel.·time	1935	Time············Rel.·time
1936	-------------------------------------------------------------------------------	1936	-------------------------------------------------------------------------------
1937	------------------------	1937	------------------------
1938	"firstEngine"········································50············155.~~841~~us	1938	"firstEngine"········································50·············50.904us
1939	0.77%	1939	0.70%
1940	InsertionSortCollider································25············~~4677.21~~us	1940	InsertionSortCollider································25·············2084.8us
1941	23.09%	1941	28.67%
1942	InteractionLoop······································50··········~~10031~~.~~727~~us	1942	InteractionLoop······································50···········3408.971us
1943	49.52%	1943	46.88%
1944	GlobalStiffnessTimeStepper····························2·············~~68.144~~us	1944	GlobalStiffnessTimeStepper····························2··············24.69us
1945	0.34%	1945	0.34%
1946	TriaxialCompressionEngine····························50···········1225.732us	1946	TriaxialCompressionEngine····························50·············587.35us
1947	6.05%	1947	8.08%
1948	TriaxialStateRecorder·································3···········2299.367us	1948	TriaxialStateRecorder·································3············275.354us
1949	11.35%	1949	3.79%
1950	NewtonIntegrator·····································50···········~~1798~~.~~078~~us	1950	NewtonIntegrator·····································50············840.267us
1951	8.88%	1951	11.55%
1952	··forces·sync··········································50·············45.~~046~~us	1952	··forces·sync··········································50·············11.219us
1953	2.51%	1953	1.34%
1954	··motion·integration···································50···········~~1554~~.~~644~~us	1954	··motion·integration···································50············807.579us
1955	86.46%	1955	96.11%
1956	··sync·max·vel·········································50·············48.~~354~~us	1956	··sync·max·vel·········································50··············5.041us
1957	2.69%	1957	0.60%
1958	··terminate············································50·············29.~~966~~us	1958	··terminate············································50··············2.639us
1959	1.67%	1959	0.31%
1960	··TOTAL···············································200············~~1678.01~~us	1960	··TOTAL···············································200············826.478us
1961	93.32%	1961	98.36%
1962	TOTAL····························································20256.~~099~~us	1962	TOTAL·····························································7272.336us
1963	100.00%	1963	100.00%
1964	Exec·count·and·time·can·be·accessed·and·manipulated·through·Engine::timingInfo	1964	Exec·count·and·time·can·be·accessed·and·manipulated·through·Engine::timingInfo
1965	from·c++·or·Engine().execCount·and·Engine().execTime·properties·in·Python.	1965	from·c++·or·Engine().execCount·and·Engine().execTime·properties·in·Python.
1966	\x8\x8\x8·I\x8In\x8n-\x8-e\x8en\x8ng\x8gi\x8in\x8ne\x8e·a\x8an\x8nd\x8d·i\x8in\x8n-\x8-f\x8fu\x8un\x8nc\x8ct\x8to\x8or\x8r·t\x8ti\x8im\x8mi\x8in\x8ng\x8g_\x8?\x8¶·\x8\x8\x8	1966	\x8\x8\x8·I\x8In\x8n-\x8-e\x8en\x8ng\x8gi\x8in\x8ne\x8e·a\x8an\x8nd\x8d·i\x8in\x8n-\x8-f\x8fu\x8un\x8nc\x8ct\x8to\x8or\x8r·t\x8ti\x8im\x8mi\x8in\x8ng\x8g_\x8?\x8¶·\x8\x8\x8
1967	Timing·within·engines·(and·functors)·is·based·on·_\x8T_\x8i_\x8m_\x8i_\x8n_\x8g_\x8D_\x8e_\x8l_\x8t_\x8a_\x8s·class·which·is·by	1967	Timing·within·engines·(and·functors)·is·based·on·_\x8T_\x8i_\x8m_\x8i_\x8n_\x8g_\x8D_\x8e_\x8l_\x8t_\x8a_\x8s·class·which·is·by
1968	default·instantiated·in·engines·and·functors·as·Engine::timingDeltas·and	1968	default·instantiated·in·engines·and·functors·as·Engine::timingDeltas·and
1969	Functor::timingDeltas·(_\x8E_\x8n_\x8g_\x8i_\x8n_\x8e_\x8._\x8t_\x8i_\x8m_\x8i_\x8n_\x8g_\x8D_\x8e_\x8l_\x8t_\x8a_\x8s·and·_\x8F_\x8u_\x8n_\x8c_\x8t_\x8o_\x8r_\x8._\x8t_\x8i_\x8m_\x8i_\x8n_\x8g_\x8D_\x8e_\x8l_\x8t_\x8a_\x8s·in·Python).	1969	Functor::timingDeltas·(_\x8E_\x8n_\x8g_\x8i_\x8n_\x8e_\x8._\x8t_\x8i_\x8m_\x8i_\x8n_\x8g_\x8D_\x8e_\x8l_\x8t_\x8a_\x8s·and·_\x8F_\x8u_\x8n_\x8c_\x8t_\x8o_\x8r_\x8._\x8t_\x8i_\x8m_\x8i_\x8n_\x8g_\x8D_\x8e_\x8l_\x8t_\x8a_\x8s·in·Python).


Offset 61914, 15 lines modified		Offset 61914, 14 lines modified
61914	········"014":·[28,·29],	61914	········"014":·[28,·29],
61915	········"015":·28,	61915	········"015":·28,
61916	········"016":·[28,·29],	61916	········"016":·[28,·29],
61917	········"017":·[28,·33],	61917	········"017":·[28,·33],
61918	········"018":·28,	61918	········"018":·28,
61919	········"019":·28,	61919	········"019":·28,
61920	········"01a":·[35,·43],	61920	········"01a":·[35,·43],
61921	········"01u":·27,
61922	········"02":·[13,·22,·27,·28,·33,·44,·60,·65,·67],	61921	········"02":·[13,·22,·27,·28,·33,·44,·60,·65,·67],
61923	········"020":·28,	61922	········"020":·28,
61924	········"0207":·29,	61923	········"0207":·29,
61925	········"021":·28,	61924	········"021":·28,
61926	········"021302":·29,	61925	········"021302":·29,
61927	········"022":·28,	61926	········"022":·28,
61928	········"022904":·28,	61927	········"022904":·28,
Offset 61946, 18 lines modified		Offset 61945, 18 lines modified
61946	········"03m":·[23,·35,·43],	61945	········"03m":·[23,·35,·43],
61947	········"04":·[0,·3,·6,·22,·28,·33,·42,·47,·59],	61946	········"04":·[0,·3,·6,·22,·28,·33,·42,·47,·59],
61948	········"040":·28,	61947	········"040":·28,
61949	········"0402":·28,	61948	········"0402":·28,
61950	········"04022023":·28,	61949	········"04022023":·28,
61951	········"041":·28,	61950	········"041":·28,
61952	········"041301":·28,	61951	········"041301":·28,
		61952	········"041u":·27,
61953	········"0423":·28,	61953	········"0423":·28,
61954	········"046u":·27,
61955	········"0471975511965976":·47,	61954	········"0471975511965976":·47,
61956	········"05":·[2~~7,·2~~8,·29,·31,·32,·33,·34,·46,·47,·60,·67],	61955	········"05":·[28,·29,·31,·32,·33,·34,·46,·47,·60,·67],
61957	········"0500":·28,	61956	········"0500":·28,
61958	········"051":·28,	61957	········"051":·28,
61959	········"052":·28,	61958	········"052":·28,
61960	········"0527":·28,	61959	········"0527":·28,
61961	········"052905":·28,	61960	········"052905":·28,
61962	········"0530":·60,	61961	········"0530":·60,
61963	········"0558":·28,	61962	········"0558":·28,
Offset 61967, 31 lines modified		Offset 61966, 30 lines modified
61967	········"0579":·28,	61966	········"0579":·28,
61968	········"05d":·66,	61967	········"05d":·66,
61969	········"06":·[27,·28,·29,·33,·44,·57,·60,·66],	61968	········"06":·[27,·28,·29,·33,·44,·57,·60,·66],
61970	········"06016042":·28,	61969	········"06016042":·28,
61971	········"062203":·28,	61970	········"062203":·28,
61972	········"0627":·28,	61971	········"0627":·28,
61973	········"064302":·[28,·29],	61972	········"064302":·[28,·29],
		61973	········"06695464744252444":·35,
61974	········"0687":·28,	61974	········"0687":·28,
61975	········"0689":·28,	61975	········"0689":·28,
61976	········"07":·[28,·29,·66],	61976	········"07":·[28,·29,·66],
61977	········"0714":·28,	61977	········"0714":·28,
61978	········"0731":·28,	61978	········"0731":·28,
61979	········"0733":·29,	61979	········"0733":·29,
61980	········"0740":·28,	61980	········"0740":·28,
61981	········"0785":·28,	61981	········"0785":·28,
61982	········"078u":·27,
61983	········"08":·[27,·28,·29,·47,·59,·65],	61982	········"08":·[27,·28,·29,·47,·59,·65],
61984	········"0815":·28,	61983	········"0815":·28,
61985	········"08927029208022474":·29,	61984	········"08927029208022474":·29,
61986	········"08927029908022097":·29,	61985	········"08927029908022097":·29,
61987	········"09":·[2~~7,·2~~8,·29,·65],	61986	········"09":·[28,·29,·65],
61988	········"090192":·29,	61987	········"090192":·29,
61989	········"09057":·28,	61988	········"09057":·28,
61990	········"099u":·27,
61991	········"0b000011":·[60,·67],	61989	········"0b000011":·[60,·67],
61992	········"0b011":·34,	61990	········"0b011":·34,
61993	········"0b100101":·60,	61991	········"0b100101":·60,
61994	········"0b1101":·60,	61992	········"0b1101":·60,
61995	········"0e":·46,	61993	········"0e":·46,
61996	········"0e9":·[40,·44],	61994	········"0e9":·[40,·44],
61997	········"0i":·1,	61995	········"0i":·1,
Offset 62003, 52 lines modified		Offset 62001, 52 lines modified
62003	········"0x00000000004a7c5":·47,	62001	········"0x00000000004a7c5":·47,
62004	········"0x000000000051336d":·47,	62002	········"0x000000000051336d":·47,
62005	········"0x00007f0fcd0b4b23":·47,	62003	········"0x00007f0fcd0b4b23":·47,
62006	········"0x00007f0fcd87ed57":·47,	62004	········"0x00007f0fcd87ed57":·47,
62007	········"0x00007f0fcd88c7e9":·47,	62005	········"0x00007f0fcd88c7e9":·47,
62008	········"0x00007f0fcd88cb20":·47,	62006	········"0x00007f0fcd88cb20":·47,
62009	········"0x00007f0fcd8f4f7d":·47,	62007	········"0x00007f0fcd8f4f7d":·47,
62010	········"0x1176790":·35,
62011	········"0x12d76d0":·[60,·67],
62012	········"0x12d89c0":·23,
62013	········"0x1c54620":·47,	62008	········"0x1c54620":·47,
62014	········"0x1fd21b0":·66,
62015	········"0x2~~2ccea~~0":·43,	62009	········"0x2032b20":·35,
		62010	········"0x21a9a10":·[60,·67],
62016	········"0x2d06770":·27,	62011	········"0x2d06770":·27,
		62012	········"0x2d34000":·66,
62017	········"0x357f8a0":·35,
62018	········"0x359aa20":·23,
62019	········"0x359e6e0":·23,
62020	········"0x35a9d60":·43,	62013	········"0x328a920":·43,
62021	········"0x35df1a0":·23,
62022	········"0x362f6c0":·23,
62023	········"0x~~364ef3~~0":·27,	62014	········"0x44a44d0":·27,
		62015	········"0x44b2720":·23,
62024	········"0x~~3679b~~10":·23,	62016	········"0x44cb610":·23,
		62017	········"0x44da4a0":·23,
		62018	········"0x4507950":·47,
62025	········"0x~~368~~8490":·35,	62019	········"0x4548900":·35,
		62020	········"0x45a2aa0":·23,
62026	········"0x~~385d30~~0":·35,	62021	········"0x45aed40":·23,
62027	········"0x~~386612~~0":·35,	62022	········"0x45ca310":·23,
62028	········"0x~~38af4e~~0":·43,	62023	········"0x4652e70":·43,
		62024	········"0x475f820":·35,
62029	········"0x~~38c90~~10":·43,	62025	········"0x4793710":·43,
62030	········"0x3a69440":·47,
62031	········"0x~~3a73f6~~0":·43,	62026	········"0x47993a0":·35,
		62027	········"0x479d800":·35,
62032	········"0x~~3a8~~3dd0":·47,	62028	········"0x4963dd0":·43,
62033	········"0x~~3aa~~5a30":·47,	62029	········"0x49652a0":·47,
		62030	········"0x49653b0":·47,
		62031	········"0x4967170":·43,
62034	········"0x7f0fb1268710":·47,	62032	········"0x7f0fb1268710":·47,
62035	········"0x7f0fb29f2710":·47,	62033	········"0x7f0fb29f2710":·47,
62036	········"0x7f0fb31f3710":·47,	62034	········"0x7f0fb31f3710":·47,
62037	········"0x7f0fcee53700":·47,	62035	········"0x7f0fcee53700":·47,
62038	········"0x7f1e4231e440":·25,	62036	········"0x7f1e4231e440":·25,
62039	········"0x7f20086a1490":·25,	62037	········"0x7f20086a1490":·25,
62040	········"0x7f21a8c8d3a0":·25,	62038	········"0x7f21a8c8d3a0":·25,
62041	········"0x7f3142e43440":·25,	62039	········"0x7f3142e43440":·25,
62042	········"0x7f5b61ae9440":·25,	62040	········"0x7f5b61ae9440":·25,
62043	········"0x7f622b47f490":·25,	62041	········"0x7f622b47f490":·25,
62044	········"0x7f7a264ff5a0":·23,
62045	········"0x7f8dc7b73440":·25,	62042	········"0x7f8dc7b73440":·25,
62046	········"0x7f9231213490":·25,	62043	········"0x7f9231213490":·25,
62047	········"0x7f9c0a399490":·25,	62044	········"0x7f9c0a399490":·25,
		62045	········"0x7f9e0fbff4c0":·23,
62048	········"0x7fb699b1a440":·25,	62046	········"0x7fb699b1a440":·25,
62049	········"0x7fdd466b8440":·25,	62047	········"0x7fdd466b8440":·25,
Max diff block lines reached; 22967/26836 bytes (85.58%) of diff not shown.


Offset 225, 18 lines modified		Offset 225, 18 lines modified
225	<p>Periodic·boundary·is·a·“boundary”·created·by·using·periodic·(rather·than·infinite)·space.·Such·boundary·is·activated·by·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Omega.periodic">O.periodic=True·</a>,·and·the·space·configuration·is·decribed·by·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Omega.cell">O.cell·</a>.·It·is·well·suited·for·studying·bulk·material·behavior,·as·boundary·effects·are·avoided,·leading·to·smaller·number·of·particles.·On·the·other·hand,·it·might·not·be·suitable·for·studying·localization,·as·any·cell-level·effects·(such·as·shear·bands)·have·to·satisfy·periodicity·as·well.</p>	225	<p>Periodic·boundary·is·a·“boundary”·created·by·using·periodic·(rather·than·infinite)·space.·Such·boundary·is·activated·by·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Omega.periodic">O.periodic=True·</a>,·and·the·space·configuration·is·decribed·by·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Omega.cell">O.cell·</a>.·It·is·well·suited·for·studying·bulk·material·behavior,·as·boundary·effects·are·avoided,·leading·to·smaller·number·of·particles.·On·the·other·hand,·it·might·not·be·suitable·for·studying·localization,·as·any·cell-level·effects·(such·as·shear·bands)·have·to·satisfy·periodicity·as·well.</p>
226	<p>The·periodic·cell·is·described·by·its·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Cell.refSize">reference·size·</a>·of·box·aligned·with·global·axes,·and·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Cell.trsf">current·transformation</a>,·which·can·capture·stretch,·shear·and·rotation.·Deformation·is·prescribed·via·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Cell.velGrad">velocity·gradient</a>,·which·updates·the·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Cell.trsf">transformation</a>·before·the·next·step.·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Cell.homoDeform">Homothetic·deformation</a>·can·smear·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Cell.velGrad">velocity·gradient</a>·accross·the·cell,·making·the·boundary·dissolve·in·the·whole·cell.</p>	226	<p>The·periodic·cell·is·described·by·its·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Cell.refSize">reference·size·</a>·of·box·aligned·with·global·axes,·and·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Cell.trsf">current·transformation</a>,·which·can·capture·stretch,·shear·and·rotation.·Deformation·is·prescribed·via·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Cell.velGrad">velocity·gradient</a>,·which·updates·the·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Cell.trsf">transformation</a>·before·the·next·step.·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Cell.homoDeform">Homothetic·deformation</a>·can·smear·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Cell.velGrad">velocity·gradient</a>·accross·the·cell,·making·the·boundary·dissolve·in·the·whole·cell.</p>
227	<p>Stress·and·strains·can·be·controlled·with·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController">PeriTriaxController</a>;·it·is·possible·to·prescribe·mixed·strain/stress·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController.goal">goal</a>·state·using·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController.stressMask">PeriTriaxController.stressMask</a>.</p>	227	<p>Stress·and·strains·can·be·controlled·with·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController">PeriTriaxController</a>;·it·is·possible·to·prescribe·mixed·strain/stress·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController.goal">goal</a>·state·using·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController.stressMask">PeriTriaxController.stressMask</a>.</p>
228	<p>The·following·creates·periodic·cloud·of·spheres·and·compresses·to·achieve·<span·class="math·notranslate·nohighlight">\(\sigma_x\)</span>=-10·kPa,·<span·class="math·notranslate·nohighlight">\(\sigma_y\)</span>=-10kPa·and·<span·class="math·notranslate·nohighlight">\(\eps_z\)</span>=-0.1.·Since·stress·is·specified·for·<span·class="math·notranslate·nohighlight">\(y\)</span>·and·<span·class="math·notranslate·nohighlight">\(z\)</span>,·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController.stressMask">stressMask</a>·is·binary·<code·class="docutils·literal·notranslate"><span·class="pre">0b011</span></code>·(x→1,·y→2,·z→4,·in·decimal·1+2=3).</p>	228	<p>The·following·creates·periodic·cloud·of·spheres·and·compresses·to·achieve·<span·class="math·notranslate·nohighlight">\(\sigma_x\)</span>=-10·kPa,·<span·class="math·notranslate·nohighlight">\(\sigma_y\)</span>=-10kPa·and·<span·class="math·notranslate·nohighlight">\(\eps_z\)</span>=-0.1.·Since·stress·is·specified·for·<span·class="math·notranslate·nohighlight">\(y\)</span>·and·<span·class="math·notranslate·nohighlight">\(z\)</span>,·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController.stressMask">stressMask</a>·is·binary·<code·class="docutils·literal·notranslate"><span·class="pre">0b011</span></code>·(x→1,·y→2,·z→4,·in·decimal·1+2=3).</p>
229	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[1]:·</span><span·class="n">sp</span><span·class="o">=</span><span·class="n">pack</span><span·class="o">.</span><span·class="n">SpherePack</span><span·class="p">()</span>	229	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[1]:·</span><span·class="n">sp</span><span·class="o">=</span><span·class="n">pack</span><span·class="o">.</span><span·class="n">SpherePack</span><span·class="p">()</span>

230	<span·class="gp">Yade·[2]:·</span><span·class="n">sp</span><span·class="o">.</span><span·class="n">makeCloud</span><span·class="p">((</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">),(</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">),</span><span·class="n">rMean</span><span·class="o">=</span><span·class="mf">.16</span><span·class="p">,</span><span·class="n">periodic</span><span·class="o">=</span><span·class="kc">True</span><span·class="p">)</span>	230	<span·class="gp">Yade·[2]:·</span><span·class="n">sp</span><span·class="o">.</span><span·class="n">makeCloud</span><span·class="p">((</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">),(</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">),</span><span·class="n">rMean</span><span·class="o">=</span><span·class="mf">.16</span><span·class="p">,</span><span·class="n">periodic</span><span·class="o">=</span><span·class="kc">True</span><span·class="p">)</span>
231	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">2</span><span·class="p">]:</span>·<span·class="mi">20</span>	231	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">2</span><span·class="p">]:</span>·<span·class="mi">19</span>

232	<span·class="gp">Yade·[3]:·</span><span·class="n">sp</span><span·class="o">.</span><span·class="n">toSimulation</span><span·class="p">()</span>·············<span·class="c1">#·implicitly·sets·O.periodic=True,·and·O.cell.refSize·to·the·packing·period·size</span>	232	<span·class="gp">Yade·[3]:·</span><span·class="n">sp</span><span·class="o">.</span><span·class="n">toSimulation</span><span·class="p">()</span>·············<span·class="c1">#·implicitly·sets·O.periodic=True,·and·O.cell.refSize·to·the·packing·period·size</span>
233	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">3</span><span·class="p">]:</span>·<span·class="p">[</span><span·class="mi">4</span><span·class="p">,</span>·<span·class="mi">5</span><span·class="p">,</span>·<span·class="mi">6</span><span·class="p">,</span>·<span·class="mi">7</span><span·class="p">,</span>·<span·class="mi">8</span><span·class="p">,</span>·<span·class="mi">9</span><span·class="p">,</span>·<span·class="mi">10</span><span·class="p">,</span>·<span·class="mi">11</span><span·class="p">,</span>·<span·class="mi">12</span><span·class="p">,</span>·<span·class="mi">13</span><span·class="p">,</span>·<span·class="mi">14</span><span·class="p">,</span>·<span·class="mi">15</span><span·class="p">,</span>·<span·class="mi">16</span><span·class="p">,</span>·<span·class="mi">17</span><span·class="p">,</span>·<span·class="mi">18</span><span·class="p">,</span>·<span·class="mi">19</span><span·class="p">,</span>·<span·class="mi">20</span><span·class="p">,</span>·<span·class="mi">21</span><span·class="p">,</span>·<span·class="mi">22</span><span·class="p">~~,</span>·<span·class="mi">23</span><span·class="p">~~]</span>	233	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">3</span><span·class="p">]:</span>·<span·class="p">[</span><span·class="mi">4</span><span·class="p">,</span>·<span·class="mi">5</span><span·class="p">,</span>·<span·class="mi">6</span><span·class="p">,</span>·<span·class="mi">7</span><span·class="p">,</span>·<span·class="mi">8</span><span·class="p">,</span>·<span·class="mi">9</span><span·class="p">,</span>·<span·class="mi">10</span><span·class="p">,</span>·<span·class="mi">11</span><span·class="p">,</span>·<span·class="mi">12</span><span·class="p">,</span>·<span·class="mi">13</span><span·class="p">,</span>·<span·class="mi">14</span><span·class="p">,</span>·<span·class="mi">15</span><span·class="p">,</span>·<span·class="mi">16</span><span·class="p">,</span>·<span·class="mi">17</span><span·class="p">,</span>·<span·class="mi">18</span><span·class="p">,</span>·<span·class="mi">19</span><span·class="p">,</span>·<span·class="mi">20</span><span·class="p">,</span>·<span·class="mi">21</span><span·class="p">,</span>·<span·class="mi">22</span><span·class="p">]</span>

234	<span·class="gp">Yade·[4]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">engines</span><span·class="o">+=</span><span·class="p">[</span><span·class="n">PeriTriaxController</span><span·class="p">(</span><span·class="n">goal</span><span·class="o">=</span><span·class="p">(</span><span·class="o">-</span><span·class="mf">1e4</span><span·class="p">,</span><span·class="o">-</span><span·class="mf">1e4</span><span·class="p">,</span><span·class="o">-</span><span·class="mf">.1</span><span·class="p">),</span><span·class="n">stressMask</span><span·class="o">=</span><span·class="mb">0b011</span><span·class="p">,</span><span·class="n">maxUnbalanced</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">,</span><span·class="n">doneHook</span><span·class="o">=</span><span·class="s1">'functionToRunWhenFinished()'</span><span·class="p">)]</span>	234	<span·class="gp">Yade·[4]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">engines</span><span·class="o">+=</span><span·class="p">[</span><span·class="n">PeriTriaxController</span><span·class="p">(</span><span·class="n">goal</span><span·class="o">=</span><span·class="p">(</span><span·class="o">-</span><span·class="mf">1e4</span><span·class="p">,</span><span·class="o">-</span><span·class="mf">1e4</span><span·class="p">,</span><span·class="o">-</span><span·class="mf">.1</span><span·class="p">),</span><span·class="n">stressMask</span><span·class="o">=</span><span·class="mb">0b011</span><span·class="p">,</span><span·class="n">maxUnbalanced</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">,</span><span·class="n">doneHook</span><span·class="o">=</span><span·class="s1">'functionToRunWhenFinished()'</span><span·class="p">)]</span>
235	</pre></div>	235	</pre></div>
236	</div>	236	</div>
237	<p>When·the·simulation·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Omega.run">runs</a>,·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController">PeriTriaxController</a>·takes·over·the·control·and·calls·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController.doneHook">doneHook</a>·when·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController.goal">goal</a>·is·reached.·A·full·simulation·with·PeriTriaxController·might·look·like·the·following:</p>	237	<p>When·the·simulation·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Omega.run">runs</a>,·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController">PeriTriaxController</a>·takes·over·the·control·and·calls·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController.doneHook">doneHook</a>·when·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.PeriTriaxController.goal">goal</a>·is·reached.·A·full·simulation·with·PeriTriaxController·might·look·like·the·following:</p>
238	<div·class="highlight-default·notranslate"><div·class="highlight"><pre><span></span><span·class="kn">from</span>·<span·class="nn">__future__</span>·<span·class="kn">import</span>·<span·class="n">print_function</span>	238	<div·class="highlight-default·notranslate"><div·class="highlight"><pre><span></span><span·class="kn">from</span>·<span·class="nn">__future__</span>·<span·class="kn">import</span>·<span·class="n">print_function</span>
239	<span·class="kn">from</span>·<span·class="nn">yade</span>·<span·class="kn">import</span>·<span·class="n">pack</span><span·class="p">,</span>·<span·class="n">plot</span>	239	<span·class="kn">from</span>·<span·class="nn">yade</span>·<span·class="kn">import</span>·<span·class="n">pack</span><span·class="p">,</span>·<span·class="n">plot</span>


Offset 122, 20 lines modified		Offset 122, 19 lines modified
122	The·following·creates·periodic·cloud·of·spheres·and·compresses·to·achieve·\	122	The·following·creates·periodic·cloud·of·spheres·and·compresses·to·achieve·\
123	(\sigma_x\)=-10·kPa,·\(\sigma_y\)=-10kPa·and·\(\eps_z\)=-0.1.·Since·stress·is	123	(\sigma_x\)=-10·kPa,·\(\sigma_y\)=-10kPa·and·\(\eps_z\)=-0.1.·Since·stress·is
124	specified·for·\(y\)·and·\(z\),·_\x8s_\x8t_\x8r_\x8e_\x8s_\x8s_\x8M_\x8a_\x8s_\x8k·is·binary·0b011·(x→1,·y→2,·z→4,·in	124	specified·for·\(y\)·and·\(z\),·_\x8s_\x8t_\x8r_\x8e_\x8s_\x8s_\x8M_\x8a_\x8s_\x8k·is·binary·0b011·(x→1,·y→2,·z→4,·in
125	decimal·1+2=3).	125	decimal·1+2=3).
126	Yade·[1]:·sp=pack.SpherePack()	126	Yade·[1]:·sp=pack.SpherePack()

127	Yade·[2]:·sp.makeCloud((1,1,1),(2,2,2),rMean=.16,periodic=True)	127	Yade·[2]:·sp.makeCloud((1,1,1),(2,2,2),rMean=.16,periodic=True)
128	Out[2]:·20	128	Out[2]:·19

129	Yade·[3]:·sp.toSimulation()·············#·implicitly·sets·O.periodic=True,·and	129	Yade·[3]:·sp.toSimulation()·············#·implicitly·sets·O.periodic=True,·and
130	O.cell.refSize·to·the·packing·period·size	130	O.cell.refSize·to·the·packing·period·size
131	Out[3]:·[4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,	131	Out[3]:·[4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22]
132	23]

133	Yade·[4]:·O.engines+=[PeriTriaxController(goal=(-1e4,-	132	Yade·[4]:·O.engines+=[PeriTriaxController(goal=(-1e4,-
134	1e4,-.1),stressMask=0b011,maxUnbalanced=.2,doneHook='functionToRunWhenFinished	133	1e4,-.1),stressMask=0b011,maxUnbalanced=.2,doneHook='functionToRunWhenFinished
135	()')]	134	()')]
136	When·the·simulation·_\x8r_\x8u_\x8n_\x8s,·_\x8P_\x8e_\x8r_\x8i_\x8T_\x8r_\x8i_\x8a_\x8x_\x8C_\x8o_\x8n_\x8t_\x8r_\x8o_\x8l_\x8l_\x8e_\x8r·takes·over·the·control·and·calls	135	When·the·simulation·_\x8r_\x8u_\x8n_\x8s,·_\x8P_\x8e_\x8r_\x8i_\x8T_\x8r_\x8i_\x8a_\x8x_\x8C_\x8o_\x8n_\x8t_\x8r_\x8o_\x8l_\x8l_\x8e_\x8r·takes·over·the·control·and·calls
137	_\x8d_\x8o_\x8n_\x8e_\x8H_\x8o_\x8o_\x8k·when·_\x8g_\x8o_\x8a_\x8l·is·reached.·A·full·simulation·with·PeriTriaxController·might	136	_\x8d_\x8o_\x8n_\x8e_\x8H_\x8o_\x8o_\x8k·when·_\x8g_\x8o_\x8a_\x8l·is·reached.·A·full·simulation·with·PeriTriaxController·might
138	look·like·the·following:	137	look·like·the·following:


Offset 317, 15 lines modified		Offset 317, 15 lines modified
317	module;·to·mention·a·few·of·them,·they·are·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e,·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t,	317	module;·to·mention·a·few·of·them,·they·are·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e,·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t,
318	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l.	318	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l.
319	Yade·[43]:·s=utils.sphere((0,0,0),radius=1)····#·create·sphere·particle	319	Yade·[43]:·s=utils.sphere((0,0,0),radius=1)····#·create·sphere·particle
320	centered·at·(0,0,0)·with·radius=1	320	centered·at·(0,0,0)·with·radius=1

321	Yade·[44]:·s.shape·······················#·s.shape·describes·the·geometry·of	321	Yade·[44]:·s.shape·······················#·s.shape·describes·the·geometry·of
322	the·particle	322	the·particle
323	Out[44]:·<Sphere·instance·at·0x~~385~~d300>	323	Out[44]:·<Sphere·instance·at·0x479d800>

324	Yade·[45]:·s.shape.radius················#·we·already·know·the·Sphere·class	324	Yade·[45]:·s.shape.radius················#·we·already·know·the·Sphere·class
325	Out[45]:·1.0	325	Out[45]:·1.0

326	Yade·[46]:·s.state.mass,·s.state.inertia·#·inertia·is·computed·from·density·and	326	Yade·[46]:·s.state.mass,·s.state.inertia·#·inertia·is·computed·from·density·and
327	geometry	327	geometry
328	Out[46]:	328	Out[46]:
Offset 340, 41 lines modified		Offset 340, 42 lines modified
340	In·the·last·example,·the·particle·was·fixed·in·space·by·the·fixed=True	340	In·the·last·example,·the·particle·was·fixed·in·space·by·the·fixed=True
341	parameter·to·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e;·such·a·particle·will·not·move,·creating·a·primitive	341	parameter·to·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e;·such·a·particle·will·not·move,·creating·a·primitive
342	boundary·condition.	342	boundary·condition.
343	A·particle·object·is·not·yet·part·of·the·simulation;·in·order·to·do·so,·a	343	A·particle·object·is·not·yet·part·of·the·simulation;·in·order·to·do·so,·a
344	special·function·_\x8O_\x8._\x8b_\x8o_\x8d_\x8i_\x8e_\x8s_\x8._\x8a_\x8p_\x8p_\x8e_\x8n_\x8d·(also·see·_\x8O_\x8m_\x8e_\x8g_\x8a_\x8:_\x8:_\x8b_\x8o_\x8d_\x8i_\x8e_\x8s·and·_\x8S_\x8c_\x8e_\x8n_\x8e)·is·called:	344	special·function·_\x8O_\x8._\x8b_\x8o_\x8d_\x8i_\x8e_\x8s_\x8._\x8a_\x8p_\x8p_\x8e_\x8n_\x8d·(also·see·_\x8O_\x8m_\x8e_\x8g_\x8a_\x8:_\x8:_\x8b_\x8o_\x8d_\x8i_\x8e_\x8s·and·_\x8S_\x8c_\x8e_\x8n_\x8e)·is·called:
345	Yade·[49]:·O.bodies.append(s)············#·adds·particle·s·to·the·simulation;	345	Yade·[49]:·O.bodies.append(s)············#·adds·particle·s·to·the·simulation;
346	returns·id·of·the·particle(s)·added	346	returns·id·of·the·particle(s)·added
347	Out[49]:·24	347	Out[49]:·23
348	\x8\x8\x8·P\x8Pa\x8ac\x8ck\x8ks\x8s_\x8?\x8¶·\x8\x8\x8	348	\x8\x8\x8·P\x8Pa\x8ac\x8ck\x8ks\x8s_\x8?\x8¶·\x8\x8\x8
349	There·are·functions·to·generate·a·specific·arrangement·of·particles·in·the·_\x8p_\x8a_\x8c_\x8k	349	There·are·functions·to·generate·a·specific·arrangement·of·particles·in·the·_\x8p_\x8a_\x8c_\x8k
350	module;·for·instance,·cloud·(random·loose·packing)·of·spheres·can·be·generated	350	module;·for·instance,·cloud·(random·loose·packing)·of·spheres·can·be·generated
351	with·the·_\x8p_\x8a_\x8c_\x8k_\x8._\x8S_\x8p_\x8h_\x8e_\x8r_\x8e_\x8P_\x8a_\x8c_\x8k·class:	351	with·the·_\x8p_\x8a_\x8c_\x8k_\x8._\x8S_\x8p_\x8h_\x8e_\x8r_\x8e_\x8P_\x8a_\x8c_\x8k·class:
352	Yade·[50]:·from·yade·import·pack	352	Yade·[50]:·from·yade·import·pack

353	Yade·[51]:·sp=pack.SpherePack()···················#·create·an·empty·cloud;	353	Yade·[51]:·sp=pack.SpherePack()···················#·create·an·empty·cloud;
354	SpherePack·contains·only·geometrical·information	354	SpherePack·contains·only·geometrical·information

355	Yade·[52]:·sp.makeCloud((1,1,1),(2,2,2),rMean=.2)·#·put·spheres·with·defined	355	Yade·[52]:·sp.makeCloud((1,1,1),(2,2,2),rMean=.2)·#·put·spheres·with·defined
356	radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)	356	radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)
357	Out[52]:·6	357	Out[52]:·7

358	Yade·[53]:·for·c,r·in·sp:·print(c,r)···············#·print·center·and·radius·of	358	Yade·[53]:·for·c,r·in·sp:·print(c,r)···············#·print·center·and·radius·of
359	all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)	359	all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)
360	···....:	360	···....:
361	Vector3(1.297212283874070504,1.258314925968938347,1.200895873625540622)·0.2
362	Vector3(1.484936176324154644,1.786101075640776026,1.256958822064891734)·0.2
363	Vector3(1.780348420160337453,1.499427550458366509,1.624245617288021304)·0.2
364	Vector3(1.697256923292062902,1.271861695597710007,1.267796117292300018)·0.2
365	Vector3(1.268057039020888954,1.308071790037659943,1.668563490379483039)·0.2
366	Vector3(1.3~~032~~30310~~57844041~~,1.751049~~849~~687323468,1.7232~~35252333~~6~~818~~)·0.2	361	Vector3(1.316594303164593693,1.611823916656478284,1.796392796134786973)·0.2
		362	Vector3(1.644698492192295358,1.358932739128685618,1.481862066641215669)·0.2
		363	Vector3(1.721337363052881431,1.639842442235056819,1.765808679260428171)·0.2
		364	Vector3(1.327127829959693806,1.346882600392281137,1.202933546091098815)·0.2
		365	Vector3(1.70726041933348327,1.763914505245050002,1.312337290316700766)·0.2
		366	Vector3(1.232052241022582262,1.790188857854590809,1.283358275660709147)·0.2
		367	Vector3(1.249812716241304855,1.203225172973583668,1.602005255761377533)·0.2

367	Yade·[54]:·sp.toSimulation()······················#·create·particles·and·add	368	Yade·[54]:·sp.toSimulation()······················#·create·particles·and·add
368	them·to·the·simulation	369	them·to·the·simulation
369	Out[54]:·[25,·26,·27,·28,·29,·30]	370	Out[54]:·[24,·25,·26,·27,·28,·29,·30]
370	\x8\x8\x8·B\x8Bo\x8ou\x8un\x8nd\x8da\x8ar\x8ri\x8ie\x8es\x8s_\x8?\x8¶·\x8\x8\x8	371	\x8\x8\x8·B\x8Bo\x8ou\x8un\x8nd\x8da\x8ar\x8ri\x8ie\x8es\x8s_\x8?\x8¶·\x8\x8\x8
371	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t·(triangle·_\x8F_\x8a_\x8c_\x8e_\x8t)·and·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l·(infinite·axes-aligned·plane·_\x8W_\x8a_\x8l_\x8l)	372	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t·(triangle·_\x8F_\x8a_\x8c_\x8e_\x8t)·and·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l·(infinite·axes-aligned·plane·_\x8W_\x8a_\x8l_\x8l)
372	geometries·are·typically·used·to·define·boundaries.·For·instance,·a·“floor”·for	373	geometries·are·typically·used·to·define·boundaries.·For·instance,·a·“floor”·for
373	the·simulation·can·be·created·like·this:	374	the·simulation·can·be·created·like·this:
374	Yade·[55]:·O.bodies.append(utils.wall(-1,axis=2))	375	Yade·[55]:·O.bodies.append(utils.wall(-1,axis=2))
375	Out[55]:·31	376	Out[55]:·31
376	There·are·other·conveinence·functions·(like·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t_\x8B_\x8o_\x8x·for·creating·closed	377	There·are·other·conveinence·functions·(like·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t_\x8B_\x8o_\x8x·for·creating·closed
Offset 386, 15 lines modified		Offset 387, 15 lines modified
386	Out[56]:·32	387	Out[56]:·32

387	Yade·[57]:·O.bodies[10].shape.radius···#·radius·of·body·#10·(will·give·error·if	388	Yade·[57]:·O.bodies[10].shape.radius···#·radius·of·body·#10·(will·give·error·if
388	not·sphere,·since·only·spheres·have·radius·defined)	389	not·sphere,·since·only·spheres·have·radius·defined)
389	Out[57]:·0.16	390	Out[57]:·0.16

390	Yade·[58]:·O.bodies[12].state.pos······#·position·of·body·#12	391	Yade·[58]:·O.bodies[12].state.pos······#·position·of·body·#12
391	Out[58]:·Vector3(1.654~~2558~~5092~~045635~~,1.4~~71717~~4767~~067~~5~~5789~~,1.6254~~70669781688304~~)	392	Out[58]:·Vector3(1.54781752782922144,1.06695464744252444,1.821434821395253589)
392	Besides·that,·Yade·says·this·at·startup·(the·line·preceding·the·command-line):	393	Besides·that,·Yade·says·this·at·startup·(the·line·preceding·the·command-line):
393	[[·^L·clears·screen,·^U·kills·line.·F12·controller,·F11·3d·view,·F10·both,·F9	394	[[·^L·clears·screen,·^U·kills·line.·F12·controller,·F11·3d·view,·F10·both,·F9
394	generator,·F8·plot.·]]	395	generator,·F8·plot.·]]
395	··Controller	396	··Controller
396	······Pressing·F12·brings·up·a·window·for·controlling·the·simulation.·Although	397	······Pressing·F12·brings·up·a·window·for·controlling·the·simulation.·Although
397	······typically·no·human·intervention·is·done·in·large·simulations·(which·run	398	······typically·no·human·intervention·is·done·in·large·simulations·(which·run
398	······“headless”,·without·any·graphical·interaction),·it·can·be·handy·in·small	399	······“headless”,·without·any·graphical·interaction),·it·can·be·handy·in·small
Offset 442, 18 lines modified		Offset 443, 18 lines modified
442	···....:····NewtonIntegrator(damping=.2,label='newtonCustomLabel')······#	443	···....:····NewtonIntegrator(damping=.2,label='newtonCustomLabel')······#
443	define·a·label·newtonCustomLabel·under·which·we·can·access·this·engine·easily	444	define·a·label·newtonCustomLabel·under·which·we·can·access·this·engine·easily
444	···....:·]	445	···....:·]
445	···....:	446	···....:

446	Yade·[61]:·O.engines	447	Yade·[61]:·O.engines
447	Out[61]:	448	Out[61]:
448	[<ForceResetter·instance·at·0x~~368849~~0>,	449	[<ForceResetter·instance·at·0x47993a0>,
449	·<InsertionSortCollider·instance·at·0x~~38661~~20>,	450	·<InsertionSortCollider·instance·at·0x475f820>,
450	·<InteractionLoop·instance·at·0x35~~7f8a~~0>,	451	·<InteractionLoop·instance·at·0x4548900>,
451	·<NewtonIntegrator·instance·at·0x~~117679~~0>]	452	·<NewtonIntegrator·instance·at·0x2032b20>]

452	Yade·[62]:·O.engines[-1]==newtonCustomLabel····#·is·it·the·same·object?	453	Yade·[62]:·O.engines[-1]==newtonCustomLabel····#·is·it·the·same·object?
453	Out[62]:·True	454	Out[62]:·True

454	Yade·[63]:·newtonCustomLabel.damping	455	Yade·[63]:·newtonCustomLabel.damping
455	Out[63]:·0.2	456	Out[63]:·0.2
456	Instead·of·typing·everything·into·the·command-line,·one·can·describe·simulation	457	Instead·of·typing·everything·into·the·command-line,·one·can·describe·simulation


Offset 132, 15 lines modified		Offset 132, 15 lines modified
132	module;·to·mention·a·few·of·them,·they·are·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e,·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t,	132	module;·to·mention·a·few·of·them,·they·are·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8s_\x8p_\x8h_\x8e_\x8r_\x8e,·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t,
133	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l.	133	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l.
134	Yade·[8]:·s=utils.sphere((0,0,0),radius=1)····#·create·sphere·particle·centered	134	Yade·[8]:·s=utils.sphere((0,0,0),radius=1)····#·create·sphere·particle·centered
135	at·(0,0,0)·with·radius=1	135	at·(0,0,0)·with·radius=1

136	Yade·[9]:·s.shape·······················#·s.shape·describes·the·geometry·of·the	136	Yade·[9]:·s.shape·······················#·s.shape·describes·the·geometry·of·the
137	particle	137	particle
138	Out[9]:·<Sphere·instance·at·0x~~35a9d6~~0>	138	Out[9]:·<Sphere·instance·at·0x4652e70>

139	Yade·[10]:·s.shape.radius················#·we·already·know·the·Sphere·class	139	Yade·[10]:·s.shape.radius················#·we·already·know·the·Sphere·class
140	Out[10]:·1.0	140	Out[10]:·1.0

141	Yade·[11]:·s.state.mass,·s.state.inertia·#·inertia·is·computed·from·density·and	141	Yade·[11]:·s.state.mass,·s.state.inertia·#·inertia·is·computed·from·density·and
142	geometry	142	geometry
143	Out[11]:	143	Out[11]:
Offset 167, 42 lines modified		Offset 167, 43 lines modified
167	Yade·[15]:·from·yade·import·pack	167	Yade·[15]:·from·yade·import·pack

168	Yade·[16]:·sp=pack.SpherePack()···················#·create·an·empty·cloud;	168	Yade·[16]:·sp=pack.SpherePack()···················#·create·an·empty·cloud;
169	SpherePack·contains·only·geometrical·information	169	SpherePack·contains·only·geometrical·information

170	Yade·[17]:·sp.makeCloud((1,1,1),(2,2,2),rMean=.2)·#·put·spheres·with·defined	170	Yade·[17]:·sp.makeCloud((1,1,1),(2,2,2),rMean=.2)·#·put·spheres·with·defined
171	radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)	171	radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)
172	Out[17]:·6	172	Out[17]:·7

173	Yade·[18]:·for·c,r·in·sp:·print(c,r)···············#·print·center·and·radius·of	173	Yade·[18]:·for·c,r·in·sp:·print(c,r)···············#·print·center·and·radius·of
174	all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)	174	all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)
175	···....:	175	···....:
176	Vector3(1.533752390814815181,1.543777640340308732,1.282582122621738874)·0.2
177	Vector3(1.71301083969698853,1.671334800939194176,1.731599039238917337)·0.2
178	Vector3(1.202354703771146616,1.316110013104652143,1.775078712755857824)·0.2
179	Vector3(1.599078597190785933,1.215515236926492992,1.551960508761500934)·0.2
180	Vector3(1.254191566754383924,1.76943844026629904,1.791481303227134614)·0.2
181	Vector3(1.2~~427~~6759987124~~6187~~,1.~~205875~~61~~2227253368~~,1.~~25525242~~7~~716882391~~)·0.2	176	Vector3(1.392649635381842721,1.397463613784902581,1.617376667928174472)·0.2
		177	Vector3(1.76128990671180663,1.626746334567175989,1.56528153155693639)·0.2
		178	Vector3(1.438862162949205104,1.791653572967926378,1.757544601999486256)·0.2
		179	Vector3(1.212690059857327363,1.510562385260563634,1.273114658334072669)·0.2
		180	Vector3(1.602091868429407207,1.223287575260714855,1.26088365323742968)·0.2
		181	Vector3(1.508290232473085357,1.798140265662449666,1.255255932391222906)·0.2
		182	Vector3(1.786648325753775302,1.228102645388749581,1.674824332124889459)·0.2

182	Yade·[19]:·sp.toSimulation()······················#·create·particles·and·add	183	Yade·[19]:·sp.toSimulation()······················#·create·particles·and·add
183	them·to·the·simulation	184	them·to·the·simulation
184	Out[19]:·[1,·2,·3,·4,·5,·6]	185	Out[19]:·[1,·2,·3,·4,·5,·6,·7]
185	\x8\x8\x8\x8\x8·B\x8Bo\x8ou\x8un\x8nd\x8da\x8ar\x8ri\x8ie\x8es\x8s_\x8?\x8¶·\x8\x8\x8\x8\x8	186	\x8\x8\x8\x8\x8·B\x8Bo\x8ou\x8un\x8nd\x8da\x8ar\x8ri\x8ie\x8es\x8s_\x8?\x8¶·\x8\x8\x8\x8\x8
186	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t·(triangle·_\x8F_\x8a_\x8c_\x8e_\x8t)·and·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l·(infinite·axes-aligned·plane·_\x8W_\x8a_\x8l_\x8l)	187	_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t·(triangle·_\x8F_\x8a_\x8c_\x8e_\x8t)·and·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8w_\x8a_\x8l_\x8l·(infinite·axes-aligned·plane·_\x8W_\x8a_\x8l_\x8l)
187	geometries·are·typically·used·to·define·boundaries.·For·instance,·a·“floor”·for	188	geometries·are·typically·used·to·define·boundaries.·For·instance,·a·“floor”·for
188	the·simulation·can·be·created·like·this:	189	the·simulation·can·be·created·like·this:
189	Yade·[20]:·O.bodies.append(utils.wall(-1,axis=2))	190	Yade·[20]:·O.bodies.append(utils.wall(-1,axis=2))
190	Out[20]:·7	191	Out[20]:·8
191	There·are·other·conveinence·functions·(like·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t_\x8B_\x8o_\x8x·for·creating·closed	192	There·are·other·conveinence·functions·(like·_\x8u_\x8t_\x8i_\x8l_\x8s_\x8._\x8f_\x8a_\x8c_\x8e_\x8t_\x8B_\x8o_\x8x·for·creating·closed
192	or·open·rectangular·box,·or·family·of·_\x8y_\x8m_\x8p_\x8o_\x8r_\x8t·functions)	193	or·open·rectangular·box,·or·family·of·_\x8y_\x8m_\x8p_\x8o_\x8r_\x8t·functions)
193	\x8\x8\x8\x8\x8·L\x8Lo\x8oo\x8ok\x8k·i\x8in\x8ns\x8si\x8id\x8de\x8e_\x8?\x8¶·\x8\x8\x8\x8\x8	194	\x8\x8\x8\x8\x8·L\x8Lo\x8oo\x8ok\x8k·i\x8in\x8ns\x8si\x8id\x8de\x8e_\x8?\x8¶·\x8\x8\x8\x8\x8
194	The·simulation·can·be·inspected·in·several·ways.·All·data·can·be·accessed·from	195	The·simulation·can·be·inspected·in·several·ways.·All·data·can·be·accessed·from
195	python·directly:	196	python·directly:
196	Yade·[21]:·len(O.bodies)	197	Yade·[21]:·len(O.bodies)
197	Out[21]:·8	198	Out[21]:·9

198	Yade·[22]:·O.bodies[10].shape.radius···#·radius·of·body·#10·(will·give·error·if	199	Yade·[22]:·O.bodies[10].shape.radius···#·radius·of·body·#10·(will·give·error·if
199	not·sphere,·since·only·spheres·have·radius·defined)	200	not·sphere,·since·only·spheres·have·radius·defined)
200	[0;31m-------------------------------------------------------------------------	201	[0;31m-------------------------------------------------------------------------
201	--\x1b[0m	202	--\x1b[0m
202	[0;31mIndexError\x1b[0m································Traceback·(most·recent·call	203	[0;31mIndexError\x1b[0m································Traceback·(most·recent·call
203	last)	204	last)
Offset 262, 18 lines modified		Offset 263, 18 lines modified
262	···....:····NewtonIntegrator(damping=.2,label='newtonCustomLabel')······#	263	···....:····NewtonIntegrator(damping=.2,label='newtonCustomLabel')······#
263	define·a·label·newtonCustomLabel·under·which·we·can·access·this·engine·easily	264	define·a·label·newtonCustomLabel·under·which·we·can·access·this·engine·easily
264	···....:·]	265	···....:·]
265	···....:	266	···....:

266	Yade·[25]:·O.engines	267	Yade·[25]:·O.engines
267	Out[25]:	268	Out[25]:
268	[<ForceResetter·instance·at·0x~~3a73f6~~0>,	269	[<ForceResetter·instance·at·0x4967170>,
269	·<InsertionSortCollider·instance·at·0x~~38af4e~~0>,	270	·<InsertionSortCollider·instance·at·0x4793710>,
270	·<InteractionLoop·instance·at·0x~~38c901~~0>,	271	·<InteractionLoop·instance·at·0x4963dd0>,
271	·<NewtonIntegrator·instance·at·0x22~~ccea~~0>]	272	·<NewtonIntegrator·instance·at·0x328a920>]

272	Yade·[26]:·O.engines[-1]==newtonCustomLabel····#·is·it·the·same·object?	273	Yade·[26]:·O.engines[-1]==newtonCustomLabel····#·is·it·the·same·object?
273	Out[26]:·True	274	Out[26]:·True

274	Yade·[27]:·newtonCustomLabel.damping	275	Yade·[27]:·newtonCustomLabel.damping
275	Out[27]:·0.2	276	Out[27]:·0.2
276	Instead·of·typing·everything·into·the·command-line,·one·can·describe·simulation	277	Instead·of·typing·everything·into·the·command-line,·one·can·describe·simulation


Offset 170, 15 lines modified		Offset 170, 15 lines modified
170	<p>If·no·<a·class="reference·internal"·href="yade.wrapper.html#inheritancegraphmaterial"><span·class="std·std-ref">Material</span></a>·is·specified·when·calling·<a·class="reference·external"·href="yade.utils.html#yade.utils.sphere">sphere</a>,·the·<em>last</em>·defined·material·is·used;·that·is·a·convenient·default.·If·no·material·is·defined·yet·(hence·there·is·no·last·material),·a·default·material·will·be·created:·FrictMat(density=1e3,young=1e7,poisson=.3,frictionAngle=.5).·This·should·not·happen·for·serious·simulations,·but·is·handy·in·simple·scripts,·where·exact·material·properties·are·more·or·less·irrelevant.</p>	170	<p>If·no·<a·class="reference·internal"·href="yade.wrapper.html#inheritancegraphmaterial"><span·class="std·std-ref">Material</span></a>·is·specified·when·calling·<a·class="reference·external"·href="yade.utils.html#yade.utils.sphere">sphere</a>,·the·<em>last</em>·defined·material·is·used;·that·is·a·convenient·default.·If·no·material·is·defined·yet·(hence·there·is·no·last·material),·a·default·material·will·be·created:·FrictMat(density=1e3,young=1e7,poisson=.3,frictionAngle=.5).·This·should·not·happen·for·serious·simulations,·but·is·handy·in·simple·scripts,·where·exact·material·properties·are·more·or·less·irrelevant.</p>
171	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[1]:·</span><span·class="nb">len</span><span·class="p">(</span><span·class="n">O</span><span·class="o">.</span><span·class="n">materials</span><span·class="p">)</span>	171	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[1]:·</span><span·class="nb">len</span><span·class="p">(</span><span·class="n">O</span><span·class="o">.</span><span·class="n">materials</span><span·class="p">)</span>
172	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">1</span><span·class="p">]:</span>·<span·class="mi">0</span>	172	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">1</span><span·class="p">]:</span>·<span·class="mi">0</span>

173	<span·class="gp">Yade·[2]:·</span><span·class="n">idConcrete</span><span·class="o">=</span><span·class="n">O</span><span·class="o">.</span><span·class="n">materials</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">FrictMat</span><span·class="p">(</span><span·class="n">young</span><span·class="o">=</span><span·class="mf">30e9</span><span·class="p">,</span><span·class="n">poisson</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">,</span><span·class="n">frictionAngle</span><span·class="o">=</span><span·class="mf">.6</span><span·class="p">,</span><span·class="n">label</span><span·class="o">=</span><span·class="s2">"concrete"</span><span·class="p">))</span>	173	<span·class="gp">Yade·[2]:·</span><span·class="n">idConcrete</span><span·class="o">=</span><span·class="n">O</span><span·class="o">.</span><span·class="n">materials</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">FrictMat</span><span·class="p">(</span><span·class="n">young</span><span·class="o">=</span><span·class="mf">30e9</span><span·class="p">,</span><span·class="n">poisson</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">,</span><span·class="n">frictionAngle</span><span·class="o">=</span><span·class="mf">.6</span><span·class="p">,</span><span·class="n">label</span><span·class="o">=</span><span·class="s2">"concrete"</span><span·class="p">))</span>

174	<span·class="gp">Yade·[3]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">materials</span><span·class="p">[</span><span·class="n">idConcrete</span><span·class="p">]</span>	174	<span·class="gp">Yade·[3]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">materials</span><span·class="p">[</span><span·class="n">idConcrete</span><span·class="p">]</span>
175	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">3</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">FrictMat</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x~~3aa~~5a30</span><span·class="o">></span>	175	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">3</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">FrictMat</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x49653b0</span><span·class="o">></span>

176	<span·class="c">#·uses·the·last·defined·material</span>	176	<span·class="c">#·uses·the·last·defined·material</span>
177	<span·class="gp">Yade·[4]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">sphere</span><span·class="p">(</span><span·class="n">center</span><span·class="o">=</span><span·class="p">(</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">),</span><span·class="n">radius</span><span·class="o">=</span><span·class="mi">1</span><span·class="p">))</span>	177	<span·class="gp">Yade·[4]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">sphere</span><span·class="p">(</span><span·class="n">center</span><span·class="o">=</span><span·class="p">(</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">),</span><span·class="n">radius</span><span·class="o">=</span><span·class="mi">1</span><span·class="p">))</span>
178	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">4</span><span·class="p">]:</span>·<span·class="mi">0</span>	178	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">4</span><span·class="p">]:</span>·<span·class="mi">0</span>

179	<span·class="c">#·material·given·by·id</span>	179	<span·class="c">#·material·given·by·id</span>
180	<span·class="gp">Yade·[5]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">sphere</span><span·class="p">((</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">),</span><span·class="mi">1</span><span·class="p">,</span><span·class="n">material</span><span·class="o">=</span><span·class="n">idConcrete</span><span·class="p">))</span>	180	<span·class="gp">Yade·[5]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">sphere</span><span·class="p">((</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">),</span><span·class="mi">1</span><span·class="p">,</span><span·class="n">material</span><span·class="o">=</span><span·class="n">idConcrete</span><span·class="p">))</span>
Offset 601, 15 lines modified		Offset 601, 15 lines modified
601	<span·class="gp">···....:</span>·<span·class="p">]</span>	601	<span·class="gp">···....:</span>·<span·class="p">]</span>
602	<span·class="gp">···....:</span>·	602	<span·class="gp">···....:</span>·

603	<span·class="gp">Yade·[29]:·</span><span·class="n">i</span><span·class="o">=</span><span·class="n">createInteraction</span><span·class="p">(</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">)</span>	603	<span·class="gp">Yade·[29]:·</span><span·class="n">i</span><span·class="o">=</span><span·class="n">createInteraction</span><span·class="p">(</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">)</span>

604	<span·class="c">#·created·by·functors·in·InteractionLoop</span>	604	<span·class="c">#·created·by·functors·in·InteractionLoop</span>
605	<span·class="gp">Yade·[30]:·</span><span·class="n">i</span><span·class="o">.</span><span·class="n">geom</span><span·class="p">,</span>·<span·class="n">i</span><span·class="o">.</span><span·class="n">phys</span>	605	<span·class="gp">Yade·[30]:·</span><span·class="n">i</span><span·class="o">.</span><span·class="n">geom</span><span·class="p">,</span>·<span·class="n">i</span><span·class="o">.</span><span·class="n">phys</span>
606	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">30</span><span·class="p">]:</span>·<span·class="p">(</span><span·class="o"><</span><span·class="n">ScGeom</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x~~3a83dd~~0</span><span·class="o">></span><span·class="p">,</span>·<span·class="o"><</span><span·class="n">FrictPhys</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x3a6~~944~~0</span><span·class="o">></span><span·class="p">)</span>	606	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">30</span><span·class="p">]:</span>·<span·class="p">(</span><span·class="o"><</span><span·class="n">ScGeom</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x4507950</span><span·class="o">></span><span·class="p">,</span>·<span·class="o"><</span><span·class="n">FrictPhys</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x49652a0</span><span·class="o">></span><span·class="p">)</span>
607	</pre></div>	607	</pre></div>
608	</div>	608	</div>
609	<p>This·method·will·be·rather·slow·if·many·interactions·are·to·be·created·(the·functor·lookup·will·be·repeated·for·each·of·them).·In·such·case,·ask·on·<a·class="reference·external"·href="mailto:yade-dev%40lists.launchpad.net">yade-dev<span>@</span>lists<span>.</span>launchpad<span>.</span>net</a>·to·have·the·<a·class="reference·external"·href="yade.utils.html#yade._utils.createInteraction">createInteraction</a>·function·accept·list·of·pairs·id’s·as·well.</p>	609	<p>This·method·will·be·rather·slow·if·many·interactions·are·to·be·created·(the·functor·lookup·will·be·repeated·for·each·of·them).·In·such·case,·ask·on·<a·class="reference·external"·href="mailto:yade-dev%40lists.launchpad.net">yade-dev<span>@</span>lists<span>.</span>launchpad<span>.</span>net</a>·to·have·the·<a·class="reference·external"·href="yade.utils.html#yade._utils.createInteraction">createInteraction</a>·function·accept·list·of·pairs·id’s·as·well.</p>
610	</section>	610	</section>
611	</section>	611	</section>
612	<section·id="base-engines">	612	<section·id="base-engines">
613	<h3>Base·engines<a·class="headerlink"·href="#base-engines"·title="Link·to·this·heading">¶</a></h3>	613	<h3>Base·engines<a·class="headerlink"·href="#base-engines"·title="Link·to·this·heading">¶</a></h3>
Offset 900, 19 lines modified		Offset 900, 19 lines modified
900	<ul·class="simple">	900	<ul·class="simple">
901	<li><p><code·class="docutils·literal·notranslate"><span·class="pre">O.tags</span></code>·is·<em>saved·and·loaded·with·simulation</em>;</p></li>	901	<li><p><code·class="docutils·literal·notranslate"><span·class="pre">O.tags</span></code>·is·<em>saved·and·loaded·with·simulation</em>;</p></li>
902	<li><p><code·class="docutils·literal·notranslate"><span·class="pre">O.tags</span></code>·has·some·values·pre-initialized.</p></li>	902	<li><p><code·class="docutils·literal·notranslate"><span·class="pre">O.tags</span></code>·has·some·values·pre-initialized.</p></li>
903	</ul>	903	</ul>
904	<p>After·Yade·startup,·<code·class="docutils·literal·notranslate"><span·class="pre">O.tags</span></code>·contains·the·following:</p>	904	<p>After·Yade·startup,·<code·class="docutils·literal·notranslate"><span·class="pre">O.tags</span></code>·contains·the·following:</p>
905	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[45]:·</span><span·class="nb">dict</span><span·class="p">(</span><span·class="n">O</span><span·class="o">.</span><span·class="n">tags</span><span·class="p">)</span>·<span·class="c1">#·convert·to·real·dictionary</span>	905	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[45]:·</span><span·class="nb">dict</span><span·class="p">(</span><span·class="n">O</span><span·class="o">.</span><span·class="n">tags</span><span·class="p">)</span>·<span·class="c1">#·convert·to·real·dictionary</span>
906	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">45</span><span·class="p">]:</span>·	906	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">45</span><span·class="p">]:</span>·
907	<span·class="go">{'author':·'~(pbuilder1@ionos1-amd64)',</span>	907	<span·class="go">{'author':·'second~user~(pbuilder2@i-capture-the-hostname)',</span>
908	<span·class="go">·'isoTime':·'20240~~629~~T~~0042~~05',</span>	908	<span·class="go">·'isoTime':·'20250802T195803',</span>
909	<span·class="go">·'id':·'20240~~629~~T~~0042~~05p~~22648~~48',</span>	909	<span·class="go">·'id':·'20250802T195803p3687441',</span>
910	<span·class="go">·'d.id':·'20240~~629~~T~~0042~~05p~~22648~~48',</span>	910	<span·class="go">·'d.id':·'20250802T195803p3687441',</span>
911	<span·class="go">·'id.d':·'20240~~629~~T~~0042~~05p~~22648~~48'}</span>	911	<span·class="go">·'id.d':·'20250802T195803p3687441'}</span>
912	</pre></div>	912	</pre></div>
913	</div>	913	</div>
914	<dl·class="simple">	914	<dl·class="simple">
915	<dt>author</dt><dd><p>Real·name,·username·and·machine·as·obtained·from·your·system·at·simulation·creation</p>	915	<dt>author</dt><dd><p>Real·name,·username·and·machine·as·obtained·from·your·system·at·simulation·creation</p>
916	</dd>	916	</dd>
917	<dt>id</dt><dd><p>Unique·identifier·of·this·Yade·instance·(or·of·the·instance·which·created·a·loaded·simulation).·It·is·composed·of·date,·time·and·process·number.·Useful·if·you·run·simulations·in·parallel·and·want·to·avoid·overwriting·each·other’s·outputs;·embed·<code·class="docutils·literal·notranslate"><span·class="pre">O.tags['id']</span></code>·in·output·filenames·(either·as·directory·name,·or·as·part·of·the·file’s·name·itself)·to·avoid·it.·This·is·explained·in·<a·class="reference·internal"·href="#batch-output-separate"><span·class="std·std-ref">Separating·output·files·from·jobs</span></a>·in·detail.</p>	917	<dt>id</dt><dd><p>Unique·identifier·of·this·Yade·instance·(or·of·the·instance·which·created·a·loaded·simulation).·It·is·composed·of·date,·time·and·process·number.·Useful·if·you·run·simulations·in·parallel·and·want·to·avoid·overwriting·each·other’s·outputs;·embed·<code·class="docutils·literal·notranslate"><span·class="pre">O.tags['id']</span></code>·in·output·filenames·(either·as·directory·name,·or·as·part·of·the·file’s·name·itself)·to·avoid·it.·This·is·explained·in·<a·class="reference·internal"·href="#batch-output-separate"><span·class="std·std-ref">Separating·output·files·from·jobs</span></a>·in·detail.</p>
918	</dd>	918	</dd>


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356	</div>	356	</div>
357	<p>Normal·simulations,·however,·are·run·continuously.·Starting/stopping·the·loop·is·done·by·<code·class="docutils·literal·notranslate"><span·class="pre">O.run()</span></code>·and·<code·class="docutils·literal·notranslate"><span·class="pre">O.pause()</span></code>;·note·that·<code·class="docutils·literal·notranslate"><span·class="pre">O.run()</span></code>·returns·control·to·Python·and·the·simulation·runs·in·background;·if·you·want·to·wait·for·it·to·finish,·use·<code·class="docutils·literal·notranslate"><span·class="pre">O.wait()</span></code>.·Fixed·number·of·steps·can·be·run·with·<code·class="docutils·literal·notranslate"><span·class="pre">O.run(1000)</span></code>,·<code·class="docutils·literal·notranslate"><span·class="pre">O.run(1000,True)</span></code>·will·run·and·wait.·To·stop·at·absolute·step·number,·<code·class="docutils·literal·notranslate"><span·class="pre">O.stopAtIter</span></code>·can·be·set·and·<code·class="docutils·literal·notranslate"><span·class="pre">O.run()</span></code>·called·normally.</p>	357	<p>Normal·simulations,·however,·are·run·continuously.·Starting/stopping·the·loop·is·done·by·<code·class="docutils·literal·notranslate"><span·class="pre">O.run()</span></code>·and·<code·class="docutils·literal·notranslate"><span·class="pre">O.pause()</span></code>;·note·that·<code·class="docutils·literal·notranslate"><span·class="pre">O.run()</span></code>·returns·control·to·Python·and·the·simulation·runs·in·background;·if·you·want·to·wait·for·it·to·finish,·use·<code·class="docutils·literal·notranslate"><span·class="pre">O.wait()</span></code>.·Fixed·number·of·steps·can·be·run·with·<code·class="docutils·literal·notranslate"><span·class="pre">O.run(1000)</span></code>,·<code·class="docutils·literal·notranslate"><span·class="pre">O.run(1000,True)</span></code>·will·run·and·wait.·To·stop·at·absolute·step·number,·<code·class="docutils·literal·notranslate"><span·class="pre">O.stopAtIter</span></code>·can·be·set·and·<code·class="docutils·literal·notranslate"><span·class="pre">O.run()</span></code>·called·normally.</p>
358	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[12]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">run</span><span·class="p">()</span>	358	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[12]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">run</span><span·class="p">()</span>

359	<span·class="gp">Yade·[13]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">pause</span><span·class="p">()</span>	359	<span·class="gp">Yade·[13]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">pause</span><span·class="p">()</span>

360	<span·class="gp">Yade·[14]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">iter</span>	360	<span·class="gp">Yade·[14]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">iter</span>
361	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">14</span><span·class="p">]:</span>·<span·class="mi">33656</span>	361	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">14</span><span·class="p">]:</span>·<span·class="mi">2362</span>

362	<span·class="gp">Yade·[15]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">run</span><span·class="p">(</span><span·class="mi">100000</span><span·class="p">,</span><span·class="kc">True</span><span·class="p">)</span>	362	<span·class="gp">Yade·[15]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">run</span><span·class="p">(</span><span·class="mi">100000</span><span·class="p">,</span><span·class="kc">True</span><span·class="p">)</span>

363	<span·class="gp">Yade·[16]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">iter</span>	363	<span·class="gp">Yade·[16]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">iter</span>
364	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">16</span><span·class="p">]:</span>·<span·class="mi">133656</span>	364	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">16</span><span·class="p">]:</span>·<span·class="mi">102362</span>

365	<span·class="gp">Yade·[17]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">stopAtIter</span><span·class="o">=</span><span·class="mi">500000</span>	365	<span·class="gp">Yade·[17]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">stopAtIter</span><span·class="o">=</span><span·class="mi">500000</span>

366	<span·class="gp">Yade·[18]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">run</span><span·class="p">()</span>	366	<span·class="gp">Yade·[18]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">run</span><span·class="p">()</span>

367	<span·class="gp">Yade·[19]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">wait</span><span·class="p">()</span>	367	<span·class="gp">Yade·[19]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">wait</span><span·class="p">()</span>

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433	<h2>Architecture·overview<a·class="headerlink"·href="#architecture-overview"·title="Link·to·this·heading">¶</a></h2>	433	<h2>Architecture·overview<a·class="headerlink"·href="#architecture-overview"·title="Link·to·this·heading">¶</a></h2>
434	<p>In·the·following,·a·high-level·overview·of·Yade·architecture·will·be·given.·As·many·of·the·features·are·directly·represented·in·simulation·scripts,·which·are·written·in·Python,·being·familiar·with·this·language·will·help·you·follow·the·examples.·For·the·rest,·this·knowledge·is·not·strictly·necessary·and·you·can·ignore·code·examples.</p>	434	<p>In·the·following,·a·high-level·overview·of·Yade·architecture·will·be·given.·As·many·of·the·features·are·directly·represented·in·simulation·scripts,·which·are·written·in·Python,·being·familiar·with·this·language·will·help·you·follow·the·examples.·For·the·rest,·this·knowledge·is·not·strictly·necessary·and·you·can·ignore·code·examples.</p>
435	<section·id="data-and-functions">	435	<section·id="data-and-functions">
436	<h3>Data·and·functions<a·class="headerlink"·href="#data-and-functions"·title="Link·to·this·heading">¶</a></h3>	436	<h3>Data·and·functions<a·class="headerlink"·href="#data-and-functions"·title="Link·to·this·heading">¶</a></h3>
437	<p>To·assure·flexibility·of·software·design,·yade·makes·clear·distinction·of·2·families·of·classes:·<em>data</em>·components·and·<em>functional</em>·components.·The·former·only·store·data·without·providing·functionality,·while·the·latter·define·functions·operating·on·the·data.·In·programming,·this·is·known·as·<em>visitor</em>·pattern·(as·functional·components·“visit”·the·data,·without·being·bound·to·them·explicitly).</p>	437	<p>To·assure·flexibility·of·software·design,·yade·makes·clear·distinction·of·2·families·of·classes:·<em>data</em>·components·and·<em>functional</em>·components.·The·former·only·store·data·without·providing·functionality,·while·the·latter·define·functions·operating·on·the·data.·In·programming,·this·is·known·as·<em>visitor</em>·pattern·(as·functional·components·“visit”·the·data,·without·being·bound·to·them·explicitly).</p>
438	<p>Entire·simulation,·i.e.·both·data·and·functions,·are·stored·in·a·single·<code·class="docutils·literal·notranslate"><span·class="pre">Scene</span></code>·object.·It·is·accessible·through·the·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Omega">Omega</a>·class·in·python·(a·singleton),·which·is·by·default·stored·in·the·<code·class="docutils·literal·notranslate"><span·class="pre">O</span></code>·global·variable:</p>	438	<p>Entire·simulation,·i.e.·both·data·and·functions,·are·stored·in·a·single·<code·class="docutils·literal·notranslate"><span·class="pre">Scene</span></code>·object.·It·is·accessible·through·the·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Omega">Omega</a>·class·in·python·(a·singleton),·which·is·by·default·stored·in·the·<code·class="docutils·literal·notranslate"><span·class="pre">O</span></code>·global·variable:</p>
439	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[28]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span>·······<span·class="c1">#·some·data·components</span>	439	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[28]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span>·······<span·class="c1">#·some·data·components</span>
440	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">28</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">yade</span><span·class="o">.</span><span·class="n">wrapper</span><span·class="o">.</span><span·class="n">BodyContainer</span>·<span·class="n">at</span>·<span·class="mh">0x7f~~7a264~~ff5a0</span><span·class="o">></span>	440	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">28</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">yade</span><span·class="o">.</span><span·class="n">wrapper</span><span·class="o">.</span><span·class="n">BodyContainer</span>·<span·class="n">at</span>·<span·class="mh">0x7f9e0fbff4c0</span><span·class="o">></span>

441	<span·class="gp">Yade·[29]:·</span><span·class="nb">len</span><span·class="p">(</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="p">)</span>··<span·class="c1">#·there·are·no·bodies·as·of·yet</span>	441	<span·class="gp">Yade·[29]:·</span><span·class="nb">len</span><span·class="p">(</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="p">)</span>··<span·class="c1">#·there·are·no·bodies·as·of·yet</span>
442	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">29</span><span·class="p">]:</span>·<span·class="mi">0</span>	442	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">29</span><span·class="p">]:</span>·<span·class="mi">0</span>

443	<span·class="gp">Yade·[30]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">engines</span>······<span·class="c1">#·functional·components,·empty·at·the·moment</span>	443	<span·class="gp">Yade·[30]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">engines</span>······<span·class="c1">#·functional·components,·empty·at·the·moment</span>
444	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">30</span><span·class="p">]:</span>·<span·class="p">[]</span>	444	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">30</span><span·class="p">]:</span>·<span·class="p">[]</span>
445	</pre></div>	445	</pre></div>
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471	</figure>	471	</figure>


Offset 1207, 19 lines modified		Offset 1207, 19 lines modified
1207	<span·class="w">»»»»</span><span·class="nt"><wire></span>0<span·class="nt"></wire></span>	1207	<span·class="w">»»»»</span><span·class="nt"><wire></span>0<span·class="nt"></wire></span>
1208	<span·class="w">»»»»</span><span·class="nt"><highlight></span>0<span·class="nt"></highlight></span>	1208	<span·class="w">»»»»</span><span·class="nt"><highlight></span>0<span·class="nt"></highlight></span>
1209	<span·class="w">»»»</span><span·class="nt"></px></span>	1209	<span·class="w">»»»</span><span·class="nt"></px></span>
1210	<span·class="w">»»</span><span·class="nt"></subD></span>	1210	<span·class="w">»»</span><span·class="nt"></subD></span>
1211	<span·class="w">»»</span><span·class="nt"><tags</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"6"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="nt">></span>	1211	<span·class="w">»»</span><span·class="nt"><tags</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"6"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="nt">></span>
1212	<span·class="w">»»»</span><span·class="nt"><count></span>5<span·class="nt"></count></span>	1212	<span·class="w">»»»</span><span·class="nt"><count></span>5<span·class="nt"></count></span>
1213	<span·class="w">»»»</span><span·class="nt"><item_version></span>0<span·class="nt"></item_version></span>	1213	<span·class="w">»»»</span><span·class="nt"><item_version></span>0<span·class="nt"></item_version></span>
1214	<span·class="w">»»»</span><span·class="nt"><item></span>author=~(pbuilder1@ionos1-amd64)<span·class="nt"></item></span>	1214	<span·class="w">»»»</span><span·class="nt"><item></span>author=second~user~(pbuilder2@i-capture-the-hostname)<span·class="nt"></item></span>
1215	<span·class="w">»»»</span><span·class="nt"><item></span>isoTime=20240~~629~~T~~0041~~57<span·class="nt"></item></span>	1215	<span·class="w">»»»</span><span·class="nt"><item></span>isoTime=20250802T195759<span·class="nt"></item></span>
1216	<span·class="w">»»»</span><span·class="nt"><item></span>id=20240~~629~~T~~0041~~57p~~22648~~48<span·class="nt"></item></span>	1216	<span·class="w">»»»</span><span·class="nt"><item></span>id=20250802T195759p3687441<span·class="nt"></item></span>
1217	<span·class="w">»»»</span><span·class="nt"><item></span>d.id=20240~~629~~T~~0041~~57p~~22648~~48<span·class="nt"></item></span>	1217	<span·class="w">»»»</span><span·class="nt"><item></span>d.id=20250802T195759p3687441<span·class="nt"></item></span>
1218	<span·class="w">»»»</span><span·class="nt"><item></span>id.d=20240~~629~~T~~0041~~57p~~22648~~48<span·class="nt"></item></span>	1218	<span·class="w">»»»</span><span·class="nt"><item></span>id.d=20250802T195759p3687441<span·class="nt"></item></span>
1219	<span·class="w">»»</span><span·class="nt"></tags></span>	1219	<span·class="w">»»</span><span·class="nt"></tags></span>
1220	<span·class="w">»»</span><span·class="nt"><engines</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"7"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="nt">></span>	1220	<span·class="w">»»</span><span·class="nt"><engines</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"7"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="nt">></span>
1221	<span·class="w">»»»</span><span·class="nt"><count></span>1<span·class="nt"></count></span>	1221	<span·class="w">»»»</span><span·class="nt"><count></span>1<span·class="nt"></count></span>
1222	<span·class="w">»»»</span><span·class="nt"><item_version></span>1<span·class="nt"></item_version></span>	1222	<span·class="w">»»»</span><span·class="nt"><item_version></span>1<span·class="nt"></item_version></span>
1223	<span·class="w">»»»</span><span·class="nt"><item</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"8"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"1"</span><span·class="nt">></span>	1223	<span·class="w">»»»</span><span·class="nt"><item</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"8"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"1"</span><span·class="nt">></span>
1224	<span·class="w">»»»»</span><span·class="nt"><px</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"10"</span><span·class="w">·</span><span·class="na">class_name=</span><span·class="s">"yade::GravityEngine"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"1"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">object_id=</span><span·class="s">"_4"</span><span·class="nt">></span>	1224	<span·class="w">»»»»</span><span·class="nt"><px</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"10"</span><span·class="w">·</span><span·class="na">class_name=</span><span·class="s">"yade::GravityEngine"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"1"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">object_id=</span><span·class="s">"_4"</span><span·class="nt">></span>
1225	<span·class="w">»»»»»</span><span·class="nt"><FieldApplier</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"11"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"1"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">object_id=</span><span·class="s">"_5"</span><span·class="nt">></span>	1225	<span·class="w">»»»»»</span><span·class="nt"><FieldApplier</span><span·class="w">·</span><span·class="na">class_id=</span><span·class="s">"11"</span><span·class="w">·</span><span·class="na">tracking_level=</span><span·class="s">"1"</span><span·class="w">·</span><span·class="na">version=</span><span·class="s">"0"</span><span·class="w">·</span><span·class="na">object_id=</span><span·class="s">"_5"</span><span·class="nt">></span>
Offset 1888, 15 lines modified		Offset 1888, 15 lines modified
1888	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[42]:·</span><span·class="n">ld</span><span·class="o">=</span><span·class="n">LawDispatcher</span><span·class="p">([</span><span·class="n">Law2_ScGeom_CpmPhys_Cpm</span><span·class="p">()])</span>	1888	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[42]:·</span><span·class="n">ld</span><span·class="o">=</span><span·class="n">LawDispatcher</span><span·class="p">([</span><span·class="n">Law2_ScGeom_CpmPhys_Cpm</span><span·class="p">()])</span>

1889	<span·class="gp">Yade·[43]:·</span><span·class="n">ld</span><span·class="o">.</span><span·class="n">dispMatrix</span><span·class="p">()</span>	1889	<span·class="gp">Yade·[43]:·</span><span·class="n">ld</span><span·class="o">.</span><span·class="n">dispMatrix</span><span·class="p">()</span>
1890	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">43</span><span·class="p">]:</span>·<span·class="p">{(</span><span·class="s1">'GenericSpheresContact'</span><span·class="p">,</span>·<span·class="s1">'CpmPhys'</span><span·class="p">):</span>·<span·class="s1">'Law2_ScGeom_CpmPhys_Cpm'</span><span·class="p">}</span>	1890	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">43</span><span·class="p">]:</span>·<span·class="p">{(</span><span·class="s1">'GenericSpheresContact'</span><span·class="p">,</span>·<span·class="s1">'CpmPhys'</span><span·class="p">):</span>·<span·class="s1">'Law2_ScGeom_CpmPhys_Cpm'</span><span·class="p">}</span>

1891	<span·class="c">#·see·how·the·entry·for·ScGridCoGeom·will·be·filled·after·this·request</span>	1891	<span·class="c">#·see·how·the·entry·for·ScGridCoGeom·will·be·filled·after·this·request</span>
1892	<span·class="gp">Yade·[44]:·</span><span·class="n">ld</span><span·class="o">.</span><span·class="n">dispFunctor</span><span·class="p">(</span><span·class="n">ScGridCoGeom</span><span·class="p">(),</span><span·class="n">CpmPhys</span><span·class="p">())</span>	1892	<span·class="gp">Yade·[44]:·</span><span·class="n">ld</span><span·class="o">.</span><span·class="n">dispFunctor</span><span·class="p">(</span><span·class="n">ScGridCoGeom</span><span·class="p">(),</span><span·class="n">CpmPhys</span><span·class="p">())</span>
1893	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">44</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">Law2_ScGeom_CpmPhys_Cpm</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x~~364ef3~~0</span><span·class="o">></span>	1893	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">44</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">Law2_ScGeom_CpmPhys_Cpm</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x44a44d0</span><span·class="o">></span>

1894	<span·class="gp">Yade·[45]:·</span><span·class="n">ld</span><span·class="o">.</span><span·class="n">dispMatrix</span><span·class="p">()</span>	1894	<span·class="gp">Yade·[45]:·</span><span·class="n">ld</span><span·class="o">.</span><span·class="n">dispMatrix</span><span·class="p">()</span>
1895	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">45</span><span·class="p">]:</span>·	1895	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">45</span><span·class="p">]:</span>·
1896	<span·class="go">{('GenericSpheresContact',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm',</span>	1896	<span·class="go">{('GenericSpheresContact',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm',</span>
1897	<span·class="go">·('ScGridCoGeom',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm'}</span>	1897	<span·class="go">·('ScGridCoGeom',·'CpmPhys'):·'Law2_ScGeom_CpmPhys_Cpm'}</span>
1898	</pre></div>	1898	</pre></div>
1899	</div>	1899	</div>
Offset 2016, 27 lines modified		Offset 2016, 27 lines modified
2016	<span·class="gp">Yade·[51]:·</span><span·class="n">yade</span><span·class="o">.</span><span·class="n">timing</span><span·class="o">.</span><span·class="n">reset</span><span·class="p">()</span>···················<span·class="c1">##·not·necessary·if·used·for·the·first·time</span>	2016	<span·class="gp">Yade·[51]:·</span><span·class="n">yade</span><span·class="o">.</span><span·class="n">timing</span><span·class="o">.</span><span·class="n">reset</span><span·class="p">()</span>···················<span·class="c1">##·not·necessary·if·used·for·the·first·time</span>


Offset 469, 15 lines modified		Offset 469, 15 lines modified
469	<li><p>Set·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.material">Body.material</a>·(last-defined·material·is·used,·otherwise·a·default·material·is·created)</p></li>	469	<li><p>Set·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.material">Body.material</a>·(last-defined·material·is·used,·otherwise·a·default·material·is·created)</p></li>
470	<li><p>Set·position·and·orientation·in·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.state">Body.state</a>,·compute·mass·and·moment·of·inertia·based·on·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Material">Material</a>·and·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Shape">Shape</a></p></li>	470	<li><p>Set·position·and·orientation·in·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.state">Body.state</a>,·compute·mass·and·moment·of·inertia·based·on·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Material">Material</a>·and·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Shape">Shape</a></p></li>
471	</ol>	471	</ol>
472	<p>In·order·to·avoid·such·tasks,·shorthand·functions·are·defined·in·the·<a·class="reference·external"·href="yade.utils.html#">utils</a>·module;·to·mention·a·few·of·them,·they·are·<a·class="reference·external"·href="yade.utils.html#yade.utils.sphere">utils.sphere</a>,·<a·class="reference·external"·href="yade.utils.html#yade.utils.facet">utils.facet</a>,·<a·class="reference·external"·href="yade.utils.html#yade.utils.wall">utils.wall</a>.</p>	472	<p>In·order·to·avoid·such·tasks,·shorthand·functions·are·defined·in·the·<a·class="reference·external"·href="yade.utils.html#">utils</a>·module;·to·mention·a·few·of·them,·they·are·<a·class="reference·external"·href="yade.utils.html#yade.utils.sphere">utils.sphere</a>,·<a·class="reference·external"·href="yade.utils.html#yade.utils.facet">utils.facet</a>,·<a·class="reference·external"·href="yade.utils.html#yade.utils.wall">utils.wall</a>.</p>
473	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[43]:·</span><span·class="n">s</span><span·class="o">=</span><span·class="n">utils</span><span·class="o">.</span><span·class="n">sphere</span><span·class="p">((</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">),</span><span·class="n">radius</span><span·class="o">=</span><span·class="mi">1</span><span·class="p">)</span>····<span·class="c1">#·create·sphere·particle·centered·at·(0,0,0)·with·radius=1</span>	473	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[43]:·</span><span·class="n">s</span><span·class="o">=</span><span·class="n">utils</span><span·class="o">.</span><span·class="n">sphere</span><span·class="p">((</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">),</span><span·class="n">radius</span><span·class="o">=</span><span·class="mi">1</span><span·class="p">)</span>····<span·class="c1">#·create·sphere·particle·centered·at·(0,0,0)·with·radius=1</span>

474	<span·class="gp">Yade·[44]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">shape</span>·······················<span·class="c1">#·s.shape·describes·the·geometry·of·the·particle</span>	474	<span·class="gp">Yade·[44]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">shape</span>·······················<span·class="c1">#·s.shape·describes·the·geometry·of·the·particle</span>
475	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">44</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">Sphere</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x~~385~~d300</span><span·class="o">></span>	475	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">44</span><span·class="p">]:</span>·<span·class="o"><</span><span·class="n">Sphere</span>·<span·class="n">instance</span>·<span·class="n">at</span>·<span·class="mh">0x479d800</span><span·class="o">></span>

476	<span·class="gp">Yade·[45]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">shape</span><span·class="o">.</span><span·class="n">radius</span>················<span·class="c1">#·we·already·know·the·Sphere·class</span>	476	<span·class="gp">Yade·[45]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">shape</span><span·class="o">.</span><span·class="n">radius</span>················<span·class="c1">#·we·already·know·the·Sphere·class</span>
477	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">45</span><span·class="p">]:</span>·<span·class="mf">1.0</span>	477	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">45</span><span·class="p">]:</span>·<span·class="mf">1.0</span>

478	<span·class="gp">Yade·[46]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">state</span><span·class="o">.</span><span·class="n">mass</span><span·class="p">,</span>·<span·class="n">s</span><span·class="o">.</span><span·class="n">state</span><span·class="o">.</span><span·class="n">inertia</span>·<span·class="c1">#·inertia·is·computed·from·density·and·geometry</span>	478	<span·class="gp">Yade·[46]:·</span><span·class="n">s</span><span·class="o">.</span><span·class="n">state</span><span·class="o">.</span><span·class="n">mass</span><span·class="p">,</span>·<span·class="n">s</span><span·class="o">.</span><span·class="n">state</span><span·class="o">.</span><span·class="n">inertia</span>·<span·class="c1">#·inertia·is·computed·from·density·and·geometry</span>
479	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">46</span><span·class="p">]:</span>·	479	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">46</span><span·class="p">]:</span>·
480	<span·class="go">(4188.790204786391,</span>	480	<span·class="go">(4188.790204786391,</span>
Offset 488, 39 lines modified		Offset 488, 40 lines modified

488	<span·class="gp">Yade·[48]:·</span><span·class="n">s2</span><span·class="o">=</span><span·class="n">utils</span><span·class="o">.</span><span·class="n">sphere</span><span·class="p">((</span><span·class="o">-</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">),</span><span·class="n">radius</span><span·class="o">=</span><span·class="mi">1</span><span·class="p">,</span><span·class="n">fixed</span><span·class="o">=</span><span·class="kc">True</span><span·class="p">)</span>·····<span·class="c1">#·explanation·below</span>	488	<span·class="gp">Yade·[48]:·</span><span·class="n">s2</span><span·class="o">=</span><span·class="n">utils</span><span·class="o">.</span><span·class="n">sphere</span><span·class="p">((</span><span·class="o">-</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">,</span><span·class="mi">0</span><span·class="p">),</span><span·class="n">radius</span><span·class="o">=</span><span·class="mi">1</span><span·class="p">,</span><span·class="n">fixed</span><span·class="o">=</span><span·class="kc">True</span><span·class="p">)</span>·····<span·class="c1">#·explanation·below</span>
489	</pre></div>	489	</pre></div>
490	</div>	490	</div>
491	<p>In·the·last·example,·the·particle·was·fixed·in·space·by·the·<code·class="docutils·literal·notranslate"><span·class="pre">fixed=True</span></code>·parameter·to·<a·class="reference·external"·href="yade.utils.html#yade.utils.sphere">utils.sphere</a>;·such·a·particle·will·not·move,·creating·a·primitive·boundary·condition.</p>	491	<p>In·the·last·example,·the·particle·was·fixed·in·space·by·the·<code·class="docutils·literal·notranslate"><span·class="pre">fixed=True</span></code>·parameter·to·<a·class="reference·external"·href="yade.utils.html#yade.utils.sphere">utils.sphere</a>;·such·a·particle·will·not·move,·creating·a·primitive·boundary·condition.</p>
492	<p>A·particle·object·is·not·yet·part·of·the·simulation;·in·order·to·do·so,·a·special·function·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.BodyContainer.append">O.bodies.append</a>·(also·see·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Omega.bodies">Omega::bodies</a>·and·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Scene">Scene</a>)·is·called:</p>	492	<p>A·particle·object·is·not·yet·part·of·the·simulation;·in·order·to·do·so,·a·special·function·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.BodyContainer.append">O.bodies.append</a>·(also·see·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Omega.bodies">Omega::bodies</a>·and·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Scene">Scene</a>)·is·called:</p>
493	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[49]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">s</span><span·class="p">)</span>············<span·class="c1">#·adds·particle·s·to·the·simulation;·returns·id·of·the·particle(s)·added</span>	493	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[49]:·</span><span·class="n">O</span><span·class="o">.</span><span·class="n">bodies</span><span·class="o">.</span><span·class="n">append</span><span·class="p">(</span><span·class="n">s</span><span·class="p">)</span>············<span·class="c1">#·adds·particle·s·to·the·simulation;·returns·id·of·the·particle(s)·added</span>
494	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">49</span><span·class="p">]:</span>·<span·class="mi">24</span>	494	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">49</span><span·class="p">]:</span>·<span·class="mi">23</span>
495	</pre></div>	495	</pre></div>
496	</div>	496	</div>
497	</section>	497	</section>
498	<section·id="packs">	498	<section·id="packs">
499	<h4>Packs<a·class="headerlink"·href="#packs"·title="Link·to·this·heading">¶</a></h4>	499	<h4>Packs<a·class="headerlink"·href="#packs"·title="Link·to·this·heading">¶</a></h4>
500	<p>There·are·functions·to·generate·a·specific·arrangement·of·particles·in·the·<a·class="reference·external"·href="yade.pack.html#">pack</a>·module;·for·instance,·cloud·(random·loose·packing)·of·spheres·can·be·generated·with·the·<a·class="reference·external"·href="yade.pack.html#yade._packSpheres.SpherePack">pack.SpherePack</a>·class:</p>	500	<p>There·are·functions·to·generate·a·specific·arrangement·of·particles·in·the·<a·class="reference·external"·href="yade.pack.html#">pack</a>·module;·for·instance,·cloud·(random·loose·packing)·of·spheres·can·be·generated·with·the·<a·class="reference·external"·href="yade.pack.html#yade._packSpheres.SpherePack">pack.SpherePack</a>·class:</p>
501	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[50]:·</span><span·class="kn">from</span>·<span·class="nn">yade</span>·<span·class="kn">import</span>·<span·class="n">pack</span>	501	<div·class="highlight-ipython·notranslate"><div·class="highlight"><pre><span></span><span·class="gp">Yade·[50]:·</span><span·class="kn">from</span>·<span·class="nn">yade</span>·<span·class="kn">import</span>·<span·class="n">pack</span>

502	<span·class="gp">Yade·[51]:·</span><span·class="n">sp</span><span·class="o">=</span><span·class="n">pack</span><span·class="o">.</span><span·class="n">SpherePack</span><span·class="p">()</span>···················<span·class="c1">#·create·an·empty·cloud;·SpherePack·contains·only·geometrical·information</span>	502	<span·class="gp">Yade·[51]:·</span><span·class="n">sp</span><span·class="o">=</span><span·class="n">pack</span><span·class="o">.</span><span·class="n">SpherePack</span><span·class="p">()</span>···················<span·class="c1">#·create·an·empty·cloud;·SpherePack·contains·only·geometrical·information</span>

503	<span·class="gp">Yade·[52]:·</span><span·class="n">sp</span><span·class="o">.</span><span·class="n">makeCloud</span><span·class="p">((</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">),(</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">),</span><span·class="n">rMean</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">)</span>·<span·class="c1">#·put·spheres·with·defined·radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)</span>	503	<span·class="gp">Yade·[52]:·</span><span·class="n">sp</span><span·class="o">.</span><span·class="n">makeCloud</span><span·class="p">((</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">,</span><span·class="mi">1</span><span·class="p">),(</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">,</span><span·class="mi">2</span><span·class="p">),</span><span·class="n">rMean</span><span·class="o">=</span><span·class="mf">.2</span><span·class="p">)</span>·<span·class="c1">#·put·spheres·with·defined·radius·inside·box·given·by·corners·(1,1,1)·and·(2,2,2)</span>
504	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">52</span><span·class="p">]:</span>·<span·class="mi">6</span>	504	<span·class="gr">Out</span><span·class="p">[</span><span·class="mi">52</span><span·class="p">]:</span>·<span·class="mi">7</span>

505	<span·class="gp">Yade·[53]:·</span><span·class="k">for</span>·<span·class="n">c</span><span·class="p">,</span><span·class="n">r</span>·<span·class="ow">in</span>·<span·class="n">sp</span><span·class="p">:</span>·<span·class="nb">print</span><span·class="p">(</span><span·class="n">c</span><span·class="p">,</span><span·class="n">r</span><span·class="p">)</span>···············<span·class="c1">#·print·center·and·radius·of·all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)</span>	505	<span·class="gp">Yade·[53]:·</span><span·class="k">for</span>·<span·class="n">c</span><span·class="p">,</span><span·class="n">r</span>·<span·class="ow">in</span>·<span·class="n">sp</span><span·class="p">:</span>·<span·class="nb">print</span><span·class="p">(</span><span·class="n">c</span><span·class="p">,</span><span·class="n">r</span><span·class="p">)</span>···············<span·class="c1">#·print·center·and·radius·of·all·particles·(SpherePack·is·a·sequence·which·can·be·iterated·over)</span>


Offset 64, 15 lines modified		Offset 64, 15 lines modified
64	Yade·[1]:·len(O.materials)	64	Yade·[1]:·len(O.materials)
65	Out[1]:·0	65	Out[1]:·0

66	Yade·[2]:·idConcrete=O.materials.append(FrictMat	66	Yade·[2]:·idConcrete=O.materials.append(FrictMat
67	(young=30e9,poisson=.2,frictionAngle=.6,label="concrete"))	67	(young=30e9,poisson=.2,frictionAngle=.6,label="concrete"))

68	Yade·[3]:·O.materials[idConcrete]	68	Yade·[3]:·O.materials[idConcrete]
69	Out[3]:·<FrictMat·instance·at·0x~~3aa~~5a30>	69	Out[3]:·<FrictMat·instance·at·0x49653b0>

70	#·uses·the·last·defined·material	70	#·uses·the·last·defined·material
71	Yade·[4]:·O.bodies.append(sphere(center=(0,0,0),radius=1))	71	Yade·[4]:·O.bodies.append(sphere(center=(0,0,0),radius=1))
72	Out[4]:·0	72	Out[4]:·0

73	#·material·given·by·id	73	#·material·given·by·id
74	Yade·[5]:·O.bodies.append(sphere((0,0,2),1,material=idConcrete))	74	Yade·[5]:·O.bodies.append(sphere((0,0,2),1,material=idConcrete))
Offset 567, 15 lines modified		Offset 567, 15 lines modified
567	···....:·]	567	···....:·]
568	···....:	568	···....:

569	Yade·[29]:·i=createInteraction(0,1)	569	Yade·[29]:·i=createInteraction(0,1)

570	#·created·by·functors·in·InteractionLoop	570	#·created·by·functors·in·InteractionLoop
571	Yade·[30]:·i.geom,·i.phys	571	Yade·[30]:·i.geom,·i.phys
572	Out[30]:·(<ScGeom·instance·at·0x~~3a83dd~~0>,·<FrictPhys·instance·at·0x3a6~~944~~0>)	572	Out[30]:·(<ScGeom·instance·at·0x4507950>,·<FrictPhys·instance·at·0x49652a0>)
573	This·method·will·be·rather·slow·if·many·interactions·are·to·be·created·(the	573	This·method·will·be·rather·slow·if·many·interactions·are·to·be·created·(the
574	functor·lookup·will·be·repeated·for·each·of·them).·In·such·case,·ask·on·_\x8y_\x8a_\x8d_\x8e_\x8-	574	functor·lookup·will·be·repeated·for·each·of·them).·In·such·case,·ask·on·_\x8y_\x8a_\x8d_\x8e_\x8-
575	_\x8d_\x8e_\x8v_\x8@_\x8l_\x8i_\x8s_\x8t_\x8s_\x8._\x8l_\x8a_\x8u_\x8n_\x8c_\x8h_\x8p_\x8a_\x8d_\x8._\x8n_\x8e_\x8t·to·have·the·_\x8c_\x8r_\x8e_\x8a_\x8t_\x8e_\x8I_\x8n_\x8t_\x8e_\x8r_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n·function·accept·list·of	575	_\x8d_\x8e_\x8v_\x8@_\x8l_\x8i_\x8s_\x8t_\x8s_\x8._\x8l_\x8a_\x8u_\x8n_\x8c_\x8h_\x8p_\x8a_\x8d_\x8._\x8n_\x8e_\x8t·to·have·the·_\x8c_\x8r_\x8e_\x8a_\x8t_\x8e_\x8I_\x8n_\x8t_\x8e_\x8r_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n·function·accept·list·of
576	pairs·id’s·as·well.	576	pairs·id’s·as·well.
577	\x8\x8\x8\x8·B\x8Ba\x8as\x8se\x8e·e\x8en\x8ng\x8gi\x8in\x8ne\x8es\x8s_\x8?\x8¶·\x8\x8\x8\x8	577	\x8\x8\x8\x8·B\x8Ba\x8as\x8se\x8e·e\x8en\x8ng\x8gi\x8in\x8ne\x8es\x8s_\x8?\x8¶·\x8\x8\x8\x8
578	A·typical·DEM·simulation·in·Yade·does·at·least·the·following·at·each·step·(see	578	A·typical·DEM·simulation·in·Yade·does·at·least·the·following·at·each·step·(see
579	_\x8F_\x8u_\x8n_\x8c_\x8t_\x8i_\x8o_\x8n_\x8·_\x8c_\x8o_\x8m_\x8p_\x8o_\x8n_\x8e_\x8n_\x8t_\x8s·for·details):	579	_\x8F_\x8u_\x8n_\x8c_\x8t_\x8i_\x8o_\x8n_\x8·_\x8c_\x8o_\x8m_\x8p_\x8o_\x8n_\x8e_\x8n_\x8t_\x8s·for·details):
Offset 884, 19 lines modified		Offset 884, 19 lines modified
884	implementation·in·C++·is·different)·mapping·keys·to·labels.·Contrary·to·regular	884	implementation·in·C++·is·different)·mapping·keys·to·labels.·Contrary·to·regular
885	python·dictionaries·that·you·could·create,	885	python·dictionaries·that·you·could·create,
886	····*·O.tags·is·s\x8sa\x8av\x8ve\x8ed\x8d·a\x8an\x8nd\x8d·l\x8lo\x8oa\x8ad\x8de\x8ed\x8d·w\x8wi\x8it\x8th\x8h·s\x8si\x8im\x8mu\x8ul\x8la\x8at\x8ti\x8io\x8on\x8n;	886	····*·O.tags·is·s\x8sa\x8av\x8ve\x8ed\x8d·a\x8an\x8nd\x8d·l\x8lo\x8oa\x8ad\x8de\x8ed\x8d·w\x8wi\x8it\x8th\x8h·s\x8si\x8im\x8mu\x8ul\x8la\x8at\x8ti\x8io\x8on\x8n;
887	····*·O.tags·has·some·values·pre-initialized.	887	····*·O.tags·has·some·values·pre-initialized.
888	After·Yade·startup,·O.tags·contains·the·following:	888	After·Yade·startup,·O.tags·contains·the·following:
889	Yade·[45]:·dict(O.tags)·#·convert·to·real·dictionary	889	Yade·[45]:·dict(O.tags)·#·convert·to·real·dictionary
890	Out[45]:	890	Out[45]:
891	{'author':·'~(pbuilder1@ionos1-amd64)',
892	·'isoTime':·'20240629T004205',
893	·'id':·'20240629T004205p2264848',
894	·'d.id':·'20240629T004205p2264848',
895	·'~~id.d~~':·'~~20240629T004~~205p~~2264848~~'}	891	{'author':·'second~user~(pbuilder2@i-capture-the-hostname)',
		892	·'isoTime':·'20250802T195803',
		893	·'id':·'20250802T195803p3687441',
		894	·'d.id':·'20250802T195803p3687441',
		895	·'id.d':·'20250802T195803p3687441'}
896	··author	896	··author
897	······Real·name,·username·and·machine·as·obtained·from·your·system·at	897	······Real·name,·username·and·machine·as·obtained·from·your·system·at
898	······simulation·creation	898	······simulation·creation
899	··id	899	··id
900	······Unique·identifier·of·this·Yade·instance·(or·of·the·instance·which·created	900	······Unique·identifier·of·this·Yade·instance·(or·of·the·instance·which·created
901	······a·loaded·simulation).·It·is·composed·of·date,·time·and·process·number.	901	······a·loaded·simulation).·It·is·composed·of·date,·time·and·process·number.
902	······Useful·if·you·run·simulations·in·parallel·and·want·to·avoid·overwriting	902	······Useful·if·you·run·simulations·in·parallel·and·want·to·avoid·overwriting


Offset 35822, 15 lines modified		Offset 35822, 15 lines modified
35822	<dt·class="sig·sig-object·py"·id="yade.plot.Subdomain.completeSendBodies">	35822	<dt·class="sig·sig-object·py"·id="yade.plot.Subdomain.completeSendBodies">
35823	<span·class="sig-name·descname"><span·class="pre">completeSendBodies</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(Subdomain)arg1</span></span></em><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><span·class="pre">None</span>·<span·class="pre">:</span></span></span><a·class="headerlink"·href="#yade.plot.Subdomain.completeSendBodies"·title="Link·to·this·definition">¶</a></dt>	35823	<span·class="sig-name·descname"><span·class="pre">completeSendBodies</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(Subdomain)arg1</span></span></em><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><span·class="pre">None</span>·<span·class="pre">:</span></span></span><a·class="headerlink"·href="#yade.plot.Subdomain.completeSendBodies"·title="Link·to·this·definition">¶</a></dt>
35824	<dd><p>calls·MPI_wait·to·complete·the·non·blocking·sends/recieves.</p>	35824	<dd><p>calls·MPI_wait·to·complete·the·non·blocking·sends/recieves.</p>
35825	</dd></dl>	35825	</dd></dl>

35826	<dl·class="py·method">	35826	<dl·class="py·method">
35827	<dt·class="sig·sig-object·py"·id="yade.plot.Subdomain.countIntsWith">	35827	<dt·class="sig·sig-object·py"·id="yade.plot.Subdomain.countIntsWith">
35828	<span·class="sig-name·descname"><span·class="pre">countIntsWith</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(Subdomain)arg1</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">(int)body</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">(int)someSubDomain</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(Scene)someSubDomain=<Scene</span>·<span·class="pre">instance</span>·<span·class="pre">at</span>·<span·class="pre">0x~~12d76d~~0></span></span></em><span·class="optional">]</span><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><span·class="pre">int</span>·<span·class="pre">:</span></span></span><a·class="headerlink"·href="#yade.plot.Subdomain.countIntsWith"·title="Link·to·this·definition">¶</a></dt>	35828	<span·class="sig-name·descname"><span·class="pre">countIntsWith</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(Subdomain)arg1</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">(int)body</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">(int)someSubDomain</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(Scene)someSubDomain=<Scene</span>·<span·class="pre">instance</span>·<span·class="pre">at</span>·<span·class="pre">0x21a9a10></span></span></em><span·class="optional">]</span><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><span·class="pre">int</span>·<span·class="pre">:</span></span></span><a·class="headerlink"·href="#yade.plot.Subdomain.countIntsWith"·title="Link·to·this·definition">¶</a></dt>
35829	<dd><p>returns·for·a·body·the·count·of·interactions·(real·or·virtual)·with·bodies·from·a·certain·subdomain,·interactions·with·subdomains·excluded.·Third·parameter·(scene·pointer)·can·be·left·to·default·(equivalent·to·O._sceneObj).</p>	35829	<dd><p>returns·for·a·body·the·count·of·interactions·(real·or·virtual)·with·bodies·from·a·certain·subdomain,·interactions·with·subdomains·excluded.·Third·parameter·(scene·pointer)·can·be·left·to·default·(equivalent·to·O._sceneObj).</p>
35830	</dd></dl>	35830	</dd></dl>

35831	<dl·class="py·method">	35831	<dl·class="py·method">
35832	<dt·class="sig·sig-object·py"·id="yade.plot.Subdomain.dict">	35832	<dt·class="sig·sig-object·py"·id="yade.plot.Subdomain.dict">
35833	<span·class="sig-name·descname"><span·class="pre">dict</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(Serializable)arg1</span></span></em><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><span·class="pre">dict</span>·<span·class="pre">:</span></span></span><a·class="headerlink"·href="#yade.plot.Subdomain.dict"·title="Link·to·this·definition">¶</a></dt>	35833	<span·class="sig-name·descname"><span·class="pre">dict</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(Serializable)arg1</span></span></em><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><span·class="pre">dict</span>·<span·class="pre">:</span></span></span><a·class="headerlink"·href="#yade.plot.Subdomain.dict"·title="Link·to·this·definition">¶</a></dt>
35834	<dd><p>Return·dictionary·of·attributes.</p>	35834	<dd><p>Return·dictionary·of·attributes.</p>


Offset 17088, 15 lines modified		Offset 17088, 15 lines modified
17088	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·color_\x8¶	17088	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·color_\x8¶
17089	············Color·for·rendering·(normalized·RGB).	17089	············Color·for·rendering·(normalized·RGB).
17090	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·comm_\x8¶	17090	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·comm_\x8¶
17091	············Communicator·to·be·used·for·MPI·(converts·mpi4py·comm·<->·c++·comm)	17091	············Communicator·to·be·used·for·MPI·(converts·mpi4py·comm·<->·c++·comm)
17092	········completeSendBodies((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81)·→·None·:_\x8¶	17092	········completeSendBodies((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81)·→·None·:_\x8¶
17093	············calls·MPI_wait·to·complete·the·non·blocking·sends/recieves.	17093	············calls·MPI_wait·to·complete·the·non·blocking·sends/recieves.
17094	········countIntsWith((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81,·(\x8(i\x8in\x8nt\x8t)\x8)b\x8bo\x8od\x8dy\x8y,·(\x8(i\x8in\x8nt\x8t)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n[,	17094	········countIntsWith((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81,·(\x8(i\x8in\x8nt\x8t)\x8)b\x8bo\x8od\x8dy\x8y,·(\x8(i\x8in\x8nt\x8t)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n[,
17095	········(\x8(S\x8Sc\x8ce\x8en\x8ne\x8e)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n=\x8=<\x8<S\x8Sc\x8ce\x8en\x8ne\x8e·i\x8in\x8ns\x8st\x8ta\x8an\x8nc\x8ce\x8e·a\x8at\x8t·0\x80x\x8x1.12.2d.d7.76.6d.d0\x80>\x8>])·→·int·:_\x8¶	17095	········(\x8(S\x8Sc\x8ce\x8en\x8ne\x8e)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n=\x8=<\x8<S\x8Sc\x8ce\x8en\x8ne\x8e·i\x8in\x8ns\x8st\x8ta\x8an\x8nc\x8ce\x8e·a\x8at\x8t·0\x80x\x8x2.21.1a.a9.9a.a1.10\x80>\x8>])·→·int·:_\x8¶
17096	············returns·for·a·body·the·count·of·interactions·(real·or·virtual)·with	17096	············returns·for·a·body·the·count·of·interactions·(real·or·virtual)·with
17097	············bodies·from·a·certain·subdomain,·interactions·with·subdomains	17097	············bodies·from·a·certain·subdomain,·interactions·with·subdomains
17098	············excluded.·Third·parameter·(scene·pointer)·can·be·left·to·default	17098	············excluded.·Third·parameter·(scene·pointer)·can·be·left·to·default
17099	············(equivalent·to·O._sceneObj).	17099	············(equivalent·to·O._sceneObj).
17100	········dict((\x8(S\x8Se\x8er\x8ri\x8ia\x8al\x8li\x8iz\x8za\x8ab\x8bl\x8le\x8e)\x8)a\x8ar\x8rg\x8g1\x81)·→·dict·:_\x8¶	17100	········dict((\x8(S\x8Se\x8er\x8ri\x8ia\x8al\x8li\x8iz\x8za\x8ab\x8bl\x8le\x8e)\x8)a\x8ar\x8rg\x8g1\x81)·→·dict·:_\x8¶
17101	············Return·dictionary·of·attributes.	17101	············Return·dictionary·of·attributes.
17102	········dispHierarchy((\x8(S\x8Sh\x8ha\x8ap\x8pe\x8e)\x8)a\x8ar\x8rg\x8g1\x81[,·(\x8(b\x8bo\x8oo\x8ol\x8l)\x8)n\x8na\x8am\x8me\x8es\x8s=\x8=T\x8Tr\x8ru\x8ue\x8e])·→·list·:_\x8¶	17102	········dispHierarchy((\x8(S\x8Sh\x8ha\x8ap\x8pe\x8e)\x8)a\x8ar\x8rg\x8g1\x81[,·(\x8(b\x8bo\x8oo\x8ol\x8l)\x8)n\x8na\x8am\x8me\x8es\x8s=\x8=T\x8Tr\x8ru\x8ue\x8e])·→·list·:_\x8¶


Offset 1198, 15 lines modified		Offset 1198, 15 lines modified
1198	<div·class="math·notranslate·nohighlight">	1198	<div·class="math·notranslate·nohighlight">
1199	\[\sum\frac{1}{2}\left(m_i\vec{v}_i^2+\vec{\omega}(\mat{I}\vec{\omega}^T)\right).\]</div>	1199	\[\sum\frac{1}{2}\left(m_i\vec{v}_i^2+\vec{\omega}(\mat{I}\vec{\omega}^T)\right).\]</div>
1200	<p>For·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.aspherical">aspherical</a>·bodies,·necessary·frame·transformations·are·applied·to·the·inertia·tensor·<span·class="math·notranslate·nohighlight">\(\mat{I}\)</span>·as·stored·in·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.State.inertia">state.inertia</a>.</p>	1200	<p>For·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.Body.aspherical">aspherical</a>·bodies,·necessary·frame·transformations·are·applied·to·the·inertia·tensor·<span·class="math·notranslate·nohighlight">\(\mat{I}\)</span>·as·stored·in·<a·class="reference·external"·href="yade.wrapper.html#yade.wrapper.State.inertia">state.inertia</a>.</p>
1201	</dd></dl>	1201	</dd></dl>

1202	<dl·class="py·function">	1202	<dl·class="py·function">
1203	<dt·class="sig·sig-object·py"·id="yade._utils.lsSimpleShape">	1203	<dt·class="sig·sig-object·py"·id="yade._utils.lsSimpleShape">
1204	<span·class="sig-prename·descclassname"><span·class="pre">yade._utils.</span></span><span·class="sig-name·descname"><span·class="pre">lsSimpleShape</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(int)shape</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">(AlignedBox3)aabb</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(float)step=0.1</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(float)smearCoeff=1.5</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(Vector2)epsilons=Vector2(0</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">0)</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(Clump)clump=<Clump</span>·<span·class="pre">instance</span>·<span·class="pre">at</span>·<span·class="pre">0x~~1fd21b~~0></span></span></em><span·class="optional">]</span><span·class="optional">]</span><span·class="optional">]</span><span·class="optional">]</span><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><a·class="reference·internal"·href="yade.plot.html#yade.plot.LevelSet"·title="yade.plot.LevelSet"><span·class="pre">LevelSet</span></a></span></span><a·class="headerlink"·href="#yade._utils.lsSimpleShape"·title="Link·to·this·definition">¶</a></dt>	1204	<span·class="sig-prename·descclassname"><span·class="pre">yade._utils.</span></span><span·class="sig-name·descname"><span·class="pre">lsSimpleShape</span></span><span·class="sig-paren">(</span><em·class="sig-param"><span·class="n"><span·class="pre">(int)shape</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">(AlignedBox3)aabb</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(float)step=0.1</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(float)smearCoeff=1.5</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(Vector2)epsilons=Vector2(0</span></span></em>,·<em·class="sig-param"><span·class="n"><span·class="pre">0)</span></span></em><span·class="optional">[</span>,·<em·class="sig-param"><span·class="n"><span·class="pre">(Clump)clump=<Clump</span>·<span·class="pre">instance</span>·<span·class="pre">at</span>·<span·class="pre">0x2d34000></span></span></em><span·class="optional">]</span><span·class="optional">]</span><span·class="optional">]</span><span·class="optional">]</span><span·class="sig-paren">)</span>·<span·class="sig-return"><span·class="sig-return-icon">→</span>·<span·class="sig-return-typehint"><a·class="reference·internal"·href="yade.plot.html#yade.plot.LevelSet"·title="yade.plot.LevelSet"><span·class="pre">LevelSet</span></a></span></span><a·class="headerlink"·href="#yade._utils.lsSimpleShape"·title="Link·to·this·definition">¶</a></dt>
1205	<dd><p>Creates·a·LevelSet·shape·among·pre-defined·ones.·Not·intended·to·be·used·directly,·see·levelSetBody()·instead.</p>	1205	<dd><p>Creates·a·LevelSet·shape·among·pre-defined·ones.·Not·intended·to·be·used·directly,·see·levelSetBody()·instead.</p>
1206	<dl·class="field-list·simple">	1206	<dl·class="field-list·simple">
1207	<dt·class="field-odd">Parameters<span·class="colon">:</span></dt>	1207	<dt·class="field-odd">Parameters<span·class="colon">:</span></dt>
1208	<dd·class="field-odd"><ul·class="simple">	1208	<dd·class="field-odd"><ul·class="simple">
1209	<li><p><strong>shape</strong>·(<em>int</em>)·–·a·shape·index·among·supported·choices</p></li>	1209	<li><p><strong>shape</strong>·(<em>int</em>)·–·a·shape·index·among·supported·choices</p></li>
1210	<li><p><strong>aabb</strong>·(<a·class="reference·internal"·href="yade.minieigenHP.html#yade._minieigenHP.AlignedBox3"·title="yade._minieigenHP.AlignedBox3"><em>AlignedBox3</em></a>)·–·the·axis-aligned·surrounding·box·of·the·body</p></li>	1210	<li><p><strong>aabb</strong>·(<a·class="reference·internal"·href="yade.minieigenHP.html#yade._minieigenHP.AlignedBox3"·title="yade._minieigenHP.AlignedBox3"><em>AlignedBox3</em></a>)·–·the·axis-aligned·surrounding·box·of·the·body</p></li>
1211	<li><p><strong>step</strong>·(<em>Real</em>)·–·the·LevelSet·grid·step·size</p></li>	1211	<li><p><strong>step</strong>·(<em>Real</em>)·–·the·LevelSet·grid·step·size</p></li>


Offset 835, 15 lines modified		Offset 835, 15 lines modified
835	······Compute·overall·kinetic·energy·of·the·simulation·as	835	······Compute·overall·kinetic·energy·of·the·simulation·as
836	······\[\sum\frac{1}{2}\left(m_i\vec{v}_i^2+\vec{\omega}(\mat{I}\vec	836	······\[\sum\frac{1}{2}\left(m_i\vec{v}_i^2+\vec{\omega}(\mat{I}\vec
837	······{\omega}^T)\right).\]	837	······{\omega}^T)\right).\]
838	······For·_\x8a_\x8s_\x8p_\x8h_\x8e_\x8r_\x8i_\x8c_\x8a_\x8l·bodies,·necessary·frame·transformations·are·applied·to·the	838	······For·_\x8a_\x8s_\x8p_\x8h_\x8e_\x8r_\x8i_\x8c_\x8a_\x8l·bodies,·necessary·frame·transformations·are·applied·to·the
839	······inertia·tensor·\(\mat{I}\)·as·stored·in·_\x8s_\x8t_\x8a_\x8t_\x8e_\x8._\x8i_\x8n_\x8e_\x8r_\x8t_\x8i_\x8a.	839	······inertia·tensor·\(\mat{I}\)·as·stored·in·_\x8s_\x8t_\x8a_\x8t_\x8e_\x8._\x8i_\x8n_\x8e_\x8r_\x8t_\x8i_\x8a.
840	··yade._utils.lsSimpleShape((\x8(i\x8in\x8nt\x8t)\x8)s\x8sh\x8ha\x8ap\x8pe\x8e,·(\x8(A\x8Al\x8li\x8ig\x8gn\x8ne\x8ed\x8dB\x8Bo\x8ox\x8x3\x83)\x8)a\x8aa\x8ab\x8bb\x8b[,·(\x8(f\x8fl\x8lo\x8oa\x8at\x8t)\x8)s\x8st\x8te\x8ep\x8p=\x8=0\x80.\x8.1\x81[,	840	··yade._utils.lsSimpleShape((\x8(i\x8in\x8nt\x8t)\x8)s\x8sh\x8ha\x8ap\x8pe\x8e,·(\x8(A\x8Al\x8li\x8ig\x8gn\x8ne\x8ed\x8dB\x8Bo\x8ox\x8x3\x83)\x8)a\x8aa\x8ab\x8bb\x8b[,·(\x8(f\x8fl\x8lo\x8oa\x8at\x8t)\x8)s\x8st\x8te\x8ep\x8p=\x8=0\x80.\x8.1\x81[,
841	··(\x8(f\x8fl\x8lo\x8oa\x8at\x8t)\x8)s\x8sm\x8me\x8ea\x8ar\x8rC\x8Co\x8oe\x8ef\x8ff\x8f=\x8=1\x81.\x8.5\x85[,·(\x8(V\x8Ve\x8ec\x8ct\x8to\x8or\x8r2\x82)\x8)e\x8ep\x8ps\x8si\x8il\x8lo\x8on\x8ns\x8s=\x8=V\x8Ve\x8ec\x8ct\x8to\x8or\x8r2\x82(\x8(0\x80,·0\x80)\x8)[,·(\x8(C\x8Cl\x8lu\x8um\x8mp\x8p)\x8)c\x8cl\x8lu\x8um\x8mp\x8p=\x8=<\x8<C\x8Cl\x8lu\x8um\x8mp\x8p	841	··(\x8(f\x8fl\x8lo\x8oa\x8at\x8t)\x8)s\x8sm\x8me\x8ea\x8ar\x8rC\x8Co\x8oe\x8ef\x8ff\x8f=\x8=1\x81.\x8.5\x85[,·(\x8(V\x8Ve\x8ec\x8ct\x8to\x8or\x8r2\x82)\x8)e\x8ep\x8ps\x8si\x8il\x8lo\x8on\x8ns\x8s=\x8=V\x8Ve\x8ec\x8ct\x8to\x8or\x8r2\x82(\x8(0\x80,·0\x80)\x8)[,·(\x8(C\x8Cl\x8lu\x8um\x8mp\x8p)\x8)c\x8cl\x8lu\x8um\x8mp\x8p=\x8=<\x8<C\x8Cl\x8lu\x8um\x8mp\x8p
842	··i\x8in\x8ns\x8st\x8ta\x8an\x8nc\x8ce\x8e·a\x8at\x8t·0\x80x\x8x1.1f.fd.d2.21.1b.b0\x80>\x8>]]]])·→·_\x8L_\x8e_\x8v_\x8e_\x8l_\x8S_\x8e_\x8t_\x8¶	842	··i\x8in\x8ns\x8st\x8ta\x8an\x8nc\x8ce\x8e·a\x8at\x8t·0\x80x\x8x2.2d.d3.34.40.00.00\x80>\x8>]]]])·→·_\x8L_\x8e_\x8v_\x8e_\x8l_\x8S_\x8e_\x8t_\x8¶
843	······Creates·a·LevelSet·shape·among·pre-defined·ones.·Not·intended·to·be·used	843	······Creates·a·LevelSet·shape·among·pre-defined·ones.·Not·intended·to·be·used
844	······directly,·see·levelSetBody()·instead.	844	······directly,·see·levelSetBody()·instead.
845	········Parameters:	845	········Parameters:
846	················*·s\x8sh\x8ha\x8ap\x8pe\x8e·(i\x8in\x8nt\x8t)·–·a·shape·index·among·supported·choices	846	················*·s\x8sh\x8ha\x8ap\x8pe\x8e·(i\x8in\x8nt\x8t)·–·a·shape·index·among·supported·choices
847	················*·a\x8aa\x8ab\x8bb\x8b·(_\x8A\x8A_\x8l\x8l_\x8i\x8i_\x8g\x8g_\x8n\x8n_\x8e\x8e_\x8d\x8d_\x8B\x8B_\x8o\x8o_\x8x\x8x_\x83\x83)·–·the·axis-aligned·surrounding·box·of·the	847	················*·a\x8aa\x8ab\x8bb\x8b·(_\x8A\x8A_\x8l\x8l_\x8i\x8i_\x8g\x8g_\x8n\x8n_\x8e\x8e_\x8d\x8d_\x8B\x8B_\x8o\x8o_\x8x\x8x_\x83\x83)·–·the·axis-aligned·surrounding·box·of·the
848	··················body	848	··················body
849	················*·s\x8st\x8te\x8ep\x8p·(R\x8Re\x8ea\x8al\x8l)·–·the·LevelSet·grid·step·size	849	················*·s\x8st\x8te\x8ep\x8p·(R\x8Re\x8ea\x8al\x8l)·–·the·LevelSet·grid·step·size


Offset 113, 81 lines modified		Offset 113, 81 lines modified
113	············Update·object·attributes·from·given·dictionary	113	············Update·object·attributes·from·given·dictionary
114	\x8\x8\x8\x8·S\x8Sh\x8ha\x8ap\x8pe\x8e_\x8?\x8¶·\x8\x8\x8\x8	114	\x8\x8\x8\x8·S\x8Sh\x8ha\x8ap\x8pe\x8e_\x8?\x8¶·\x8\x8\x8\x8
115	[digraph·Shape·{	115	[digraph·Shape·{
116	········rankdir=RL;	116	········rankdir=RL;
117	········margin="0.2,0.05";	117	········margin="0.2,0.05";
118	········"Shape"·[shape="box",fontsize=8,style="setlinewidth	118	········"Shape"·[shape="box",fontsize=8,style="setlinewidth
119	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Shape"];	119	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Shape"];
120	········"Wall"·[shape="box",fontsize=8,style="setlinewidth	120	········"DeformableElement"·[shape="box",fontsize=8,style="setlinewidth
121	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Wall"];	121	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableElement"];
122	········"Wall"·->·"Shape"·[arrowsize=0.5,style="setlinewidth~~(0.5)"];~~	122	········"DeformableElement"·->·"Shape"·[arrowsize=0.5,style="setlinewidth
		123	(0.5)"];
123	········"GridConnection"·[shape="box",fontsize=8,style="setlinewidth
124	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridConnection"];
125	········"GridConnection"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
126	········"~~Grid~~Node"·[shape="box",fontsize=8,style="setlinewidth	124	········"Node"·[shape="box",fontsize=8,style="setlinewidth
127	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.~~Grid~~Node"];	125	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Node"];
128	········"~~Grid~~Node"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];	126	········"Node"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
129	········"~~Lin4No~~de~~Tetra~~"·[shape="box",fontsize=8,style="setlinewidth	127	········"Subdomain"·[shape="box",fontsize=8,style="setlinewidth
130	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.~~Lin4No~~de~~Tetra~~"];	128	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Subdomain"];
		129	········"Subdomain"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
131	········"Lin4NodeTetra"·->·"DeformableElement"
132	[arrowsize=0.5,style="setlinewidth(0.5)"];
133	········"Facet"·[shape="box",fontsize=8,style="setlinewidth	130	········"Facet"·[shape="box",fontsize=8,style="setlinewidth
134	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Facet"];	131	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Facet"];
135	········"Facet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	132	········"Facet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		133	········"Sphere"·[shape="box",fontsize=8,style="setlinewidth
		134	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Sphere"];
		135	········"Sphere"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
136	········"Cylinder"·[shape="box",fontsize=8,style="setlinewidth	136	········"ChainedCylinder"·[shape="box",fontsize=8,style="setlinewidth
137	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Cylinder"];	137	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ChainedCylinder"];
138	········"Cylinder"·->·"~~Sph~~ere"·[arrowsize=0.5,style="setlinewidth~~(0.5)"];~~	138	········"ChainedCylinder"·->·"Cylinder"·[arrowsize=0.5,style="setlinewidth
		139	(0.5)"];
139	········"Lin4NodeTetra_Lin4NodeTetra_InteractionElement"
140	[shape="box",fontsize=8,style="setlinewidth
141	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra_Lin4NodeTetra_InteractionElement"];
142	········"Lin4NodeTetra_Lin4NodeTetra_InteractionElement"·-
143	>·"DeformableCohesiveElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
144	········"Box"·[shape="box",fontsize=8,style="setlinewidth	140	········"Box"·[shape="box",fontsize=8,style="setlinewidth
145	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Box"];	141	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Box"];
146	········"Box"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	142	········"Box"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
147	········"DeformableElement"·[shape="box",fontsize=8,style="setlinewidth
148	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableElement"];
149	········"DeformableElement"·->·"Shape"·[arrowsize=0.5,style="setlinewidth
150	(0.5)"];
151	········"Le~~velS~~et"·[shape="box",fontsize=8,style="setlinewidth	143	········"PFacet"·[shape="box",fontsize=8,style="setlinewidth
152	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Le~~velS~~et"];	144	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PFacet"];
153	········"Le~~velS~~et"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	145	········"PFacet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		146	········"GridConnection"·[shape="box",fontsize=8,style="setlinewidth
		147	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridConnection"];
		148	········"GridConnection"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		149	········"FluidDomainBbox"·[shape="box",fontsize=8,style="setlinewidth
		150	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.FluidDomainBbox"];
		151	········"FluidDomainBbox"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
154	········"Tetra"·[shape="box",fontsize=8,style="setlinewidth	152	········"Tetra"·[shape="box",fontsize=8,style="setlinewidth
155	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Tetra"];	153	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Tetra"];
156	········"Tetra"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	154	········"Tetra"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		155	········"Cylinder"·[shape="box",fontsize=8,style="setlinewidth
		156	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Cylinder"];
		157	········"Cylinder"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		158	········"DeformableCohesiveElement"·[shape="box",fontsize=8,style="setlinewidth
		159	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableCohesiveElement"];
		160	········"DeformableCohesiveElement"·->·"DeformableElement"
		161	[arrowsize=0.5,style="setlinewidth(0.5)"];
		162	········"Wall"·[shape="box",fontsize=8,style="setlinewidth
		163	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Wall"];
		164	········"Wall"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		165	········"LevelSet"·[shape="box",fontsize=8,style="setlinewidth
		166	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.LevelSet"];
		167	········"LevelSet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		168	········"Lin4NodeTetra"·[shape="box",fontsize=8,style="setlinewidth
		169	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra"];
		170	········"Lin4NodeTetra"·->·"DeformableElement"
		171	[arrowsize=0.5,style="setlinewidth(0.5)"];
157	········"Clump"·[shape="box",fontsize=8,style="setlinewidth	172	········"Clump"·[shape="box",fontsize=8,style="setlinewidth
158	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Clump"];	173	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Clump"];
159	········"Clump"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	174	········"Clump"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
160	········"~~Spher~~e"·[shape="box",fontsize=8,style="setlinewidth	175	········"GridNode"·[shape="box",fontsize=8,style="setlinewidth
161	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.~~Spher~~e"];	176	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.GridNode"];
162	········"~~Spher~~e"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];	177	········"GridNode"·->·"Sphere"·[arrowsize=0.5,style="setlinewidth(0.5)"];
		178	········"Lin4NodeTetra_Lin4NodeTetra_InteractionElement"
		179	[shape="box",fontsize=8,style="setlinewidth
		180	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Lin4NodeTetra_Lin4NodeTetra_InteractionElement"];
		181	········"Lin4NodeTetra_Lin4NodeTetra_InteractionElement"·-
		182	>·"DeformableCohesiveElement"·[arrowsize=0.5,style="setlinewidth(0.5)"];
163	········"PotentialParticle"·[shape="box",fontsize=8,style="setlinewidth	183	········"PotentialParticle"·[shape="box",fontsize=8,style="setlinewidth
164	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PotentialParticle"];	184	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PotentialParticle"];
165	········"PotentialParticle"·->·"Shape"·[arrowsize=0.5,style="setlinewidth	185	········"PotentialParticle"·->·"Shape"·[arrowsize=0.5,style="setlinewidth
166	(0.5)"];	186	(0.5)"];
167	········"Subdomain"·[shape="box",fontsize=8,style="setlinewidth
168	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Subdomain"];
169	········"Subdomain"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
170	········"DeformableCohesiveElement"·[shape="box",fontsize=8,style="setlinewidth
171	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.DeformableCohesiveElement"];
172	········"DeformableCohesiveElement"·->·"DeformableElement"
173	[arrowsize=0.5,style="setlinewidth(0.5)"];
174	········"PFacet"·[shape="box",fontsize=8,style="setlinewidth
175	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.PFacet"];
176	········"PFacet"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
177	········"ChainedCylinder"·[shape="box",fontsize=8,style="setlinewidth
178	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.ChainedCylinder"];
179	········"ChainedCylinder"·->·"Cylinder"·[arrowsize=0.5,style="setlinewidth
180	(0.5)"];
181	········"FluidDomainBbox"·[shape="box",fontsize=8,style="setlinewidth
182	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.FluidDomainBbox"];
183	········"FluidDomainBbox"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
184	········"Node"·[shape="box",fontsize=8,style="setlinewidth
185	(0.5),solid",height=0.2,URL="yade.wrapper.html#yade.wrapper.Node"];
186	········"Node"·->·"Shape"·[arrowsize=0.5,style="setlinewidth(0.5)"];
187	}]	187	}]
188	Inheritance·graph·of·Shape._\x8¶	188	Inheritance·graph·of·Shape._\x8¶
189	··c\x8cl\x8la\x8as\x8ss\x8s·yade.wrapper.Shape(i\x8in\x8nh\x8he\x8er\x8ri\x8it\x8ts\x8s·S\x8Se\x8er\x8ri\x8ia\x8al\x8li\x8iz\x8za\x8ab\x8bl\x8le\x8e)_\x8¶	189	··c\x8cl\x8la\x8as\x8ss\x8s·yade.wrapper.Shape(i\x8in\x8nh\x8he\x8er\x8ri\x8it\x8ts\x8s·S\x8Se\x8er\x8ri\x8ia\x8al\x8li\x8iz\x8za\x8ab\x8bl\x8le\x8e)_\x8¶
190	······Geometry·of·a·body	190	······Geometry·of·a·body
191	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·color_\x8¶	191	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·color_\x8¶
192	············Color·for·rendering·(normalized·RGB).	192	············Color·for·rendering·(normalized·RGB).
193	········dict((\x8(S\x8Se\x8er\x8ri\x8ia\x8al\x8li\x8iz\x8za\x8ab\x8bl\x8le\x8e)\x8)a\x8ar\x8rg\x8g1\x81)·→·dict·:_\x8¶	193	········dict((\x8(S\x8Se\x8er\x8ri\x8ia\x8al\x8li\x8iz\x8za\x8ab\x8bl\x8le\x8e)\x8)a\x8ar\x8rg\x8g1\x81)·→·dict·:_\x8¶
Offset 919, 15 lines modified		Offset 919, 15 lines modified
919	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·color_\x8¶	919	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·color_\x8¶
920	············Color·for·rendering·(normalized·RGB).	920	············Color·for·rendering·(normalized·RGB).
921	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·comm_\x8¶	921	········p\x8pr\x8ro\x8op\x8pe\x8er\x8rt\x8ty\x8y·comm_\x8¶
922	············Communicator·to·be·used·for·MPI·(converts·mpi4py·comm·<->·c++·comm)	922	············Communicator·to·be·used·for·MPI·(converts·mpi4py·comm·<->·c++·comm)
923	········completeSendBodies((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81)·→·None·:_\x8¶	923	········completeSendBodies((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81)·→·None·:_\x8¶
924	············calls·MPI_wait·to·complete·the·non·blocking·sends/recieves.	924	············calls·MPI_wait·to·complete·the·non·blocking·sends/recieves.
925	········countIntsWith((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81,·(\x8(i\x8in\x8nt\x8t)\x8)b\x8bo\x8od\x8dy\x8y,·(\x8(i\x8in\x8nt\x8t)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n[,	925	········countIntsWith((\x8(S\x8Su\x8ub\x8bd\x8do\x8om\x8ma\x8ai\x8in\x8n)\x8)a\x8ar\x8rg\x8g1\x81,·(\x8(i\x8in\x8nt\x8t)\x8)b\x8bo\x8od\x8dy\x8y,·(\x8(i\x8in\x8nt\x8t)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n[,
926	········(\x8(S\x8Sc\x8ce\x8en\x8ne\x8e)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n=\x8=<\x8<S\x8Sc\x8ce\x8en\x8ne\x8e·i\x8in\x8ns\x8st\x8ta\x8an\x8nc\x8ce\x8e·a\x8at\x8t·0\x80x\x8x1.12.2d.d7.76.6d.d0\x80>\x8>])·→·int·:_\x8¶	926	········(\x8(S\x8Sc\x8ce\x8en\x8ne\x8e)\x8)s\x8so\x8om\x8me\x8eS\x8Su\x8ub\x8bD\x8Do\x8om\x8ma\x8ai\x8in\x8n=\x8=<\x8<S\x8Sc\x8ce\x8en\x8ne\x8e·i\x8in\x8ns\x8st\x8ta\x8an\x8nc\x8ce\x8e·a\x8at\x8t·0\x80x\x8x2.21.1a.a9.9a.a1.10\x80>\x8>])·→·int·:_\x8¶
927	············returns·for·a·body·the·count·of·interactions·(real·or·virtual)·with	927	············returns·for·a·body·the·count·of·interactions·(real·or·virtual)·with
928	············bodies·from·a·certain·subdomain,·interactions·with·subdomains	928	············bodies·from·a·certain·subdomain,·interactions·with·subdomains
929	············excluded.·Third·parameter·(scene·pointer)·can·be·left·to·default	929	············excluded.·Third·parameter·(scene·pointer)·can·be·left·to·default
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