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| 1 | ·90c81140ea5728c0314bfce9202dc420·373852·debug·optional·tree-ppuzzle-dbgsym_5.3~rc16+dfsg-10_amd64.deb | 1 | ·90c81140ea5728c0314bfce9202dc420·373852·debug·optional·tree-ppuzzle-dbgsym_5.3~rc16+dfsg-10_amd64.deb |
| 2 | ·b9492c494648cdeb78275c4113b895d8·187188·science·optional·tree-ppuzzle_5.3~rc16+dfsg-10_amd64.deb | 2 | ·b9492c494648cdeb78275c4113b895d8·187188·science·optional·tree-ppuzzle_5.3~rc16+dfsg-10_amd64.deb |
| 3 | ·62cdb506e7769066662cec22fdeb447e·330424·debug·optional·tree-puzzle-dbgsym_5.3~rc16+dfsg-10_amd64.deb | 3 | ·62cdb506e7769066662cec22fdeb447e·330424·debug·optional·tree-puzzle-dbgsym_5.3~rc16+dfsg-10_amd64.deb |
| 4 | · | 4 | ·849134390d44c15c34daf7d006b441c2·431256·doc·optional·tree-puzzle-doc_5.3~rc16+dfsg-10_all.deb |
| 5 | ·dd1d8d1b643f829846cb4bded1048b41·169896·science·optional·tree-puzzle_5.3~rc16+dfsg-10_amd64.deb | 5 | ·dd1d8d1b643f829846cb4bded1048b41·169896·science·optional·tree-puzzle_5.3~rc16+dfsg-10_amd64.deb |
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| 1 | -rw-r--r--···0········0········0········4·2024-09-10·19:20:32.000000·debian-binary | 1 | -rw-r--r--···0········0········0········4·2024-09-10·19:20:32.000000·debian-binary |
| 2 | -rw-r--r--···0········0········0····· | 2 | -rw-r--r--···0········0········0·····4004·2024-09-10·19:20:32.000000·control.tar.xz |
| 3 | -rw-r--r--···0········0········0···4270 | 3 | -rw-r--r--···0········0········0···427060·2024-09-10·19:20:32.000000·data.tar.xz |
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| 320 | ·: | 320 | ·: |
| 321 | ·:-----1·Thylacinus | 321 | ·:-----1·Thylacinus |
| 322 | · | 322 | · |
| 323 | ·········branch··length·····S.E.···branch··length·····S.E. | 323 | ·········branch··length·····S.E.···branch··length·····S.E. |
| 324 | Thylacinus····1··0.13266··0.07077·······9··0.14146··0.08889 | 324 | Thylacinus····1··0.13266··0.07077·······9··0.14146··0.08889 |
| 325 | Sarcophilu····2··0.16398··0.05399······10··0.15536··0.07510 | 325 | Sarcophilu····2··0.16398··0.05399······10··0.15536··0.07510 |
| 326 | Dasyurus······3··0.00001··0.00 | 326 | Dasyurus······3··0.00001··0.00141······11··0.07879··0.07178 |
| 327 | Echymipera····4··0.20360··0.08378 | 327 | Echymipera····4··0.20360··0.08378 |
| 328 | Trichosuru····5··0.15345··0.07805 | 328 | Trichosuru····5··0.15345··0.07805 |
| 329 | Phalanger·····6··0.18858··0.0873 | 329 | Phalanger·····6··0.18858··0.08736 |
| 330 | Philander·····7··0.16082··0.07443·····10·iterations·until·convergence | 330 | Philander·····7··0.16082··0.07443·····10·iterations·until·convergence |
| 331 | Bos···········8··0.30632··0.12025·····log·L:·-569.50 | 331 | Bos···········8··0.30632··0.12025·····log·L:·-569.50 |
| 332 | WARNING·---·at·least·one·branch·length·is·close·to·an·internal·boundary! | 332 | WARNING·---·at·least·one·branch·length·is·close·to·an·internal·boundary! |
| 333 | Consensus·tree·with·maximum·likelihood·branch·lengths | 333 | Consensus·tree·with·maximum·likelihood·branch·lengths |
| Offset 320, 18 lines modified | Offset 320, 18 lines modified | ||
| 320 | ·: | 320 | ·: |
| 321 | ·:-----1·Thylacinus | 321 | ·:-----1·Thylacinus |
| 322 | · | 322 | · |
| 323 | ·········branch··length·····S.E.···branch··length·····S.E. | 323 | ·········branch··length·····S.E.···branch··length·····S.E. |
| 324 | Thylacinus····1··0.13266··0.07077·······9··0.14146··0.08889 | 324 | Thylacinus····1··0.13266··0.07077·······9··0.14146··0.08889 |
| 325 | Sarcophilu····2··0.16398··0.05399······10··0.15536··0.07510 | 325 | Sarcophilu····2··0.16398··0.05399······10··0.15536··0.07510 |
| 326 | Dasyurus······3··0.00001··0.00 | 326 | Dasyurus······3··0.00001··0.00141······11··0.07879··0.07178 |
| 327 | Echymipera····4··0.20360··0.08378 | 327 | Echymipera····4··0.20360··0.08378 |
| 328 | Trichosuru····5··0.15345··0.07805 | 328 | Trichosuru····5··0.15345··0.07805 |
| 329 | Phalanger·····6··0.18858··0.0873 | 329 | Phalanger·····6··0.18858··0.08736 |
| 330 | Philander·····7··0.16082··0.07443·····10·iterations·until·convergence | 330 | Philander·····7··0.16082··0.07443·····10·iterations·until·convergence |
| 331 | Bos···········8··0.30632··0.12025·····log·L:·-569.50 | 331 | Bos···········8··0.30632··0.12025·····log·L:·-569.50 |
| 332 | WARNING·---·at·least·one·branch·length·is·close·to·an·internal·boundary! | 332 | WARNING·---·at·least·one·branch·length·is·close·to·an·internal·boundary! |
| 333 | Consensus·tree·with·maximum·likelihood·branch·lengths | 333 | Consensus·tree·with·maximum·likelihood·branch·lengths |
| Offset 171, 15 lines modified | Offset 171, 15 lines modified | ||
| 171 | ·:·············:-----------------7·LGB2_LUPLU | 171 | ·:·············:-----------------7·LGB2_LUPLU |
| 172 | ·: | 172 | ·: |
| 173 | ·:-1·HBB_HUMAN | 173 | ·:-1·HBB_HUMAN |
| 174 | · | 174 | · |
| 175 | ·········branch··length·····S.E.···branch··length·····S.E. | 175 | ·········branch··length·····S.E.···branch··length·····S.E. |
| 176 | HBB_HUMAN·····1··0.04··0.03·······8··0.28··0.08 | 176 | HBB_HUMAN·····1··0.04··0.03·······8··0.28··0.08 |
| 177 | HBB_HORSE·····2··0.12··0.03·······9··0.00·· | 177 | HBB_HORSE·····2··0.12··0.03·······9··0.00··0.00 |
| 178 | HBA_HUMAN·····3··0.02··0.02······10··0.40··0.12 | 178 | HBA_HUMAN·····3··0.02··0.02······10··0.40··0.12 |
| 179 | HBA_HORSE·····4··0.09··0.03······11··0.60··0.11 | 179 | HBA_HORSE·····4··0.09··0.03······11··0.60··0.11 |
| 180 | MYG_PHYCA·····5··1.33··0.21 | 180 | MYG_PHYCA·····5··1.33··0.21 |
| 181 | GLB5_PETMA····6··0.70··0.14·····9·iterations·until·convergence | 181 | GLB5_PETMA····6··0.70··0.14·····9·iterations·until·convergence |
| 182 | LGB2_LUPLU····7··1.76··0.28·····log·L:·-1699.50 | 182 | LGB2_LUPLU····7··1.76··0.28·····log·L:·-1699.50 |
| 183 | WARNING·---·at·least·one·branch·length·is·close·to·an·internal·boundary! | 183 | WARNING·---·at·least·one·branch·length·is·close·to·an·internal·boundary! |
| Offset 171, 15 lines modified | Offset 171, 15 lines modified | ||
| 171 | ·:·············:-----------------7·LGB2_LUPLU | 171 | ·:·············:-----------------7·LGB2_LUPLU |
| 172 | ·: | 172 | ·: |
| 173 | ·:-1·HBB_HUMAN | 173 | ·:-1·HBB_HUMAN |
| 174 | · | 174 | · |
| 175 | ·········branch··length·····S.E.···branch··length·····S.E. | 175 | ·········branch··length·····S.E.···branch··length·····S.E. |
| 176 | HBB_HUMAN·····1··0.04834··0.03148·······8··0.28039··0.08746 | 176 | HBB_HUMAN·····1··0.04834··0.03148·······8··0.28039··0.08746 |
| 177 | HBB_HORSE·····2··0.12686··0.03876·······9··0.00001·· | 177 | HBB_HORSE·····2··0.12686··0.03876·······9··0.00001··0.00100 |
| 178 | HBA_HUMAN·····3··0.02653··0.02208······10··0.40361··0.12824 | 178 | HBA_HUMAN·····3··0.02653··0.02208······10··0.40361··0.12824 |
| 179 | HBA_HORSE·····4··0.09440··0.03145······11··0.60481··0.11282 | 179 | HBA_HORSE·····4··0.09440··0.03145······11··0.60481··0.11282 |
| 180 | MYG_PHYCA·····5··1.33106··0.21114 | 180 | MYG_PHYCA·····5··1.33106··0.21114 |
| 181 | GLB5_PETMA····6··0.70107··0.14140·····9·iterations·until·convergence | 181 | GLB5_PETMA····6··0.70107··0.14140·····9·iterations·until·convergence |
| 182 | LGB2_LUPLU····7··1.76830··0.28198·····log·L:·-1699.50 | 182 | LGB2_LUPLU····7··1.76830··0.28198·····log·L:·-1699.50 |
| 183 | WARNING·---·at·least·one·branch·length·is·close·to·an·internal·boundary! | 183 | WARNING·---·at·least·one·branch·length·is·close·to·an·internal·boundary! |
| Offset 251, 15 lines modified | Offset 251, 15 lines modified | ||
| 251 | ·:·············:-------6·GLB5_PETMA | 251 | ·:·············:-------6·GLB5_PETMA |
| 252 | ·: | 252 | ·: |
| 253 | ·:-1·HBB_HUMAN | 253 | ·:-1·HBB_HUMAN |
| 254 | · | 254 | · |
| 255 | ·········branch··length·····S.E.···branch··length·····S.E. | 255 | ·········branch··length·····S.E.···branch··length·····S.E. |
| 256 | HBB_HUMAN·····1··0.04869··0.03153·······8··0.27871··0.08717 | 256 | HBB_HUMAN·····1··0.04869··0.03153·······8··0.27871··0.08717 |
| 257 | HBB_HORSE·····2··0.12653··0.03874·······9··0.12334··0.1566 | 257 | HBB_HORSE·····2··0.12653··0.03874·······9··0.12334··0.15661 |
| 258 | HBA_HUMAN·····3··0.02634··0.02204······10··0.39110··0.12780 | 258 | HBA_HUMAN·····3··0.02634··0.02204······10··0.39110··0.12780 |
| 259 | HBA_HORSE·····4··0.09459··0.03147······11··0.60627··0.11286 | 259 | HBA_HORSE·····4··0.09459··0.03147······11··0.60627··0.11286 |
| 260 | MYG_PHYCA·····5··1.22880··0.20960 | 260 | MYG_PHYCA·····5··1.22880··0.20960 |
| 261 | GLB5_PETMA····6··0.69972··0.14141·····11·iterations·until·convergence | 261 | GLB5_PETMA····6··0.69972··0.14141·····11·iterations·until·convergence |
| 262 | LGB2_LUPLU····7··1.68480··0.28106·····log·L:·-1699.32 | 262 | LGB2_LUPLU····7··1.68480··0.28106·····log·L:·-1699.32 |
| Offset 291, 15 lines modified | Offset 291, 15 lines modified | ||
| 291 | ·: | 291 | ·: |
| 292 | ·:-1·HBB_HUMAN | 292 | ·:-1·HBB_HUMAN |
| 293 | · | 293 | · |
| 294 | ·········branch··length·····S.E.···branch··length·····S.E. | 294 | ·········branch··length·····S.E.···branch··length·····S.E. |
| 295 | HBB_HUMAN·····1··0.04834··0.03148·······8··0.40364··0.12824 | 295 | HBB_HUMAN·····1··0.04834··0.03148·······8··0.40364··0.12824 |
| 296 | HBB_HORSE·····2··0.12685··0.03876·······9··0.28040··0.08746 | 296 | HBB_HORSE·····2··0.12685··0.03876·······9··0.28040··0.08746 |
| 297 | HBA_HUMAN·····3··0.02653··0.02208······10··0.60481··0.1128 | 297 | HBA_HUMAN·····3··0.02653··0.02208······10··0.60481··0.11281 |
| 298 | HBA_HORSE·····4··0.09440··0.03145 | 298 | HBA_HORSE·····4··0.09440··0.03145 |
| 299 | MYG_PHYCA·····5··1.33095··0.21112 | 299 | MYG_PHYCA·····5··1.33095··0.21112 |
| 300 | GLB5_PETMA····6··0.70107··0.14140·····10·iterations·until·convergence | 300 | GLB5_PETMA····6··0.70107··0.14140·····10·iterations·until·convergence |
| 301 | LGB2_LUPLU····7··1.76831··0.28198·····log·L:·-1699.50 | 301 | LGB2_LUPLU····7··1.76831··0.28198·····log·L:·-1699.50 |
| 302 | Unrooted·user·defined·tree·with·maximum·likelihood·branch·lengths | 302 | Unrooted·user·defined·tree·with·maximum·likelihood·branch·lengths |