| | | | |
| Offset 1, 69 lines modified | Offset 1, 69 lines modified |
| 1 | Start·testing:·Apr·16·01:19·-12 | 1 | Start·testing:·Mar·14·21:41·+14 |
| 2 | ---------------------------------------------------------- | 2 | ---------------------------------------------------------- |
| 3 | 1/2·Testing:·unit_tests | 3 | 1/2·Testing:·unit_tests |
| 4 | 1/2·Test:·unit_tests | 4 | 1/2·Test:·unit_tests |
| 5 | Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/UnitTests.cmake" | 5 | Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/UnitTests.cmake" |
| 6 | Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src | 6 | Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src |
| 7 | "unit_tests"·start·time:·Apr·16·01:19·-12 | 7 | "unit_tests"·start·time:·Mar·14·21:41·+14 |
| 8 | Output: | 8 | Output: |
| 9 | ---------------------------------------------------------- | 9 | ---------------------------------------------------------- |
| 10 | --·For·unit·tests,·will·set·working·directory·to·/build/reproducible-path/salmon-1.10.2+ds1/tests | 10 | --·For·unit·tests,·will·set·working·directory·to·/build/reproducible-path/salmon-1.10.2+ds1/tests |
| 11 | =============================================================================== | 11 | =============================================================================== |
| 12 | All·tests·passed·(1983205·assertions·in·4·test·cases) | 12 | All·tests·passed·(2022279·assertions·in·4·test·cases) |
| | |
| 13 | <end·of·output> | 13 | <end·of·output> |
| 14 | Test·time·=···0.22·sec | 14 | Test·time·=···3.22·sec |
| 15 | ---------------------------------------------------------- | 15 | ---------------------------------------------------------- |
| 16 | Test·Passed. | 16 | Test·Passed. |
| 17 | "unit_tests"·end·time:·Apr·16·01:19·-12 | 17 | "unit_tests"·end·time:·Mar·14·21:41·+14 |
| 18 | "unit_tests"·time·elapsed:·00:00:00 | 18 | "unit_tests"·time·elapsed:·00:00:03 |
| 19 | ---------------------------------------------------------- | 19 | ---------------------------------------------------------- |
| | |
| 20 | 2/2·Testing:·salmon_read_test_quasi | 20 | 2/2·Testing:·salmon_read_test_quasi |
| 21 | 2/2·Test:·salmon_read_test_quasi | 21 | 2/2·Test:·salmon_read_test_quasi |
| 22 | Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/TestSalmonQuasi.cmake" | 22 | Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/TestSalmonQuasi.cmake" |
| 23 | Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src | 23 | Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src |
| 24 | "salmon_read_test_quasi"·start·time:·Apr·16·01:19·-12 | 24 | "salmon_read_test_quasi"·start·time:·Mar·14·21:41·+14 |
| 25 | Output: | 25 | Output: |
| 26 | ---------------------------------------------------------- | 26 | ---------------------------------------------------------- |
| 27 | sample_data/ | 27 | sample_data/ |
| 28 | sample_data/reads_2.fastq | 28 | sample_data/reads_2.fastq |
| 29 | sample_data/sample_alignments.bam | 29 | sample_data/sample_alignments.bam |
| 30 | sample_data/transcripts.fasta | 30 | sample_data/transcripts.fasta |
| 31 | sample_data/reads_1.fastq | 31 | sample_data/reads_1.fastq |
| 32 | index·["sample_salmon_quasi_index"]·did·not·previously·exist··.·.·.·creating·it | 32 | index·["sample_salmon_quasi_index"]·did·not·previously·exist··.·.·.·creating·it |
| 33 | [2026-04-16·01:19:23.148]·[jLog]·[warning]·The·salmon·index·is·being·built·without·any·decoy·sequences.··It·is·recommended·that·decoy·sequence·(either·computed·auxiliary·decoy·sequence·or·the·genome·of·the·organism)·be·provided·during·indexing.·Further·details·can·be·found·at·https://salmon.readthedocs.io/en/latest/salmon.html#preparing-transcriptome-indices-mapping-based-mode. | 33 | [2025-03-14·21:41:20.480]·[jLog]·[warning]·The·salmon·index·is·being·built·without·any·decoy·sequences.··It·is·recommended·that·decoy·sequence·(either·computed·auxiliary·decoy·sequence·or·the·genome·of·the·organism)·be·provided·during·indexing.·Further·details·can·be·found·at·https://salmon.readthedocs.io/en/latest/salmon.html#preparing-transcriptome-indices-mapping-based-mode. |
| 34 | [2026-04-16·01:19:23.148]·[jLog]·[info]·building·index | 34 | [2025-03-14·21:41:20.482]·[jLog]·[info]·building·index |
| 35 | out·:·sample_salmon_quasi_index | 35 | out·:·sample_salmon_quasi_index |
| 36 | [2026-04-16·01:19:23.148]·[puff::index::jointLog]·[info]·Running·fixFasta | 36 | [2025-03-14·21:41:20.482]·[puff::index::jointLog]·[info]·Running·fixFasta |
| | |
| 37 | [Step·1·of·4]·:·counting·k-mers | 37 | [Step·1·of·4]·:·counting·k-mers |
| | |
| 38 | [2026-04-16·01:19:23.152]·[puff::index::jointLog]·[info]·Replaced·0·non-ATCG·nucleotides | 38 | [2025-03-14·21:41:20.530]·[puff::index::jointLog]·[info]·Replaced·0·non-ATCG·nucleotides |
| 39 | [2026-04-16·01:19:23.152]·[puff::index::jointLog]·[info]·Clipped·poly-A·tails·from·0·transcripts | 39 | [2025-03-14·21:41:20.530]·[puff::index::jointLog]·[info]·Clipped·poly-A·tails·from·0·transcripts |
| 40 | wrote·15·cleaned·references | 40 | wrote·15·cleaned·references |
| 41 | [2026-04-16·01:19:23.152]·[puff::index::jointLog]·[info]·Filter·size·not·provided;·estimating·from·number·of·distinct·k-mers | 41 | [2025-03-14·21:41:20.543]·[puff::index::jointLog]·[info]·Filter·size·not·provided;·estimating·from·number·of·distinct·k-mers |
| 42 | [2026-04-16·01:19:23.153]·[puff::index::jointLog]·[info]·ntHll·estimated·54811·distinct·k-mers,·setting·filter·size·to·2^20 | 42 | [2025-03-14·21:41:20.546]·[puff::index::jointLog]·[info]·ntHll·estimated·54811·distinct·k-mers,·setting·filter·size·to·2^20 |
| 43 | Threads·=·2 | 43 | Threads·=·2 |
| 44 | Vertex·length·=·31 | 44 | Vertex·length·=·31 |
| 45 | Hash·functions·=·5 | 45 | Hash·functions·=·5 |
| 46 | Filter·size·=·1048576 | 46 | Filter·size·=·1048576 |
| 47 | Capacity·=·2 | 47 | Capacity·=·2 |
| 48 | Files:· | 48 | Files:· |
| 49 | sample_salmon_quasi_index/ref_k31_fixed.fa | 49 | sample_salmon_quasi_index/ref_k31_fixed.fa |
| 50 | -------------------------------------------------------------------------------- | 50 | -------------------------------------------------------------------------------- |
| 51 | Round·0,·0:1048576 | 51 | Round·0,·0:1048576 |
| 52 | Pass» Filling» Filtering | 52 | Pass» Filling» Filtering |
| 53 | 1» 0» 0» | 53 | 1» 0» 0» |
| 54 | 2» 0» 0 | 54 | 2» 0» 0 |
| 55 | True·junctions·count·=·14 | 55 | True·junctions·count·=·14 |
| 56 | False·junctions·count·=·17 | 56 | False·junctions·count·=·18 |
| 57 | Hash·table·size·=·31 | 57 | Hash·table·size·=·32 |
| 58 | Candidate·marks·count·=·54 | 58 | Candidate·marks·count·=·56 |
| 59 | -------------------------------------------------------------------------------- | 59 | -------------------------------------------------------------------------------- |
| 60 | Reallocating·bifurcations·time:·0 | 60 | Reallocating·bifurcations·time:·0 |
| 61 | True·marks·count:·51 | 61 | True·marks·count:·51 |
| 62 | Edges·construction·time:·0 | 62 | Edges·construction·time:·0 |
| 63 | -------------------------------------------------------------------------------- | 63 | -------------------------------------------------------------------------------- |
| 64 | Distinct·junctions·=·14 | 64 | Distinct·junctions·=·14 |
| | |
| Offset 73, 144 lines modified | Offset 73, 144 lines modified |
| 73 | Max·Junction·ID:·70 | 73 | Max·Junction·ID:·70 |
| 74 | seen.size():569·kmerInfo.size():71 | 74 | seen.size():569·kmerInfo.size():71 |
| 75 | approximateContigTotalLength:·17465 | 75 | approximateContigTotalLength:·17465 |
| 76 | counters·for·complex·kmers: | 76 | counters·for·complex·kmers: |
| 77 | (prec>1·&·succ>1)=0·|·(succ>1·&·isStart)=0·|·(prec>1·&·isEnd)=0·|·(isStart·&·isEnd)=0 | 77 | (prec>1·&·succ>1)=0·|·(succ>1·&·isStart)=0·|·(prec>1·&·isEnd)=0·|·(isStart·&·isEnd)=0 |
| 78 | contig·count:·24·element·count:·19592·complex·nodes:·0 | 78 | contig·count:·24·element·count:·19592·complex·nodes:·0 |
| 79 | #·of·ones·in·rank·vector:·23 | 79 | #·of·ones·in·rank·vector:·23 |
| 80 | [2026-04-16·01:19:23.175]·[puff::index::jointLog]·[info]·Starting·the·Pufferfish·indexing·by·reading·the·GFA·binary·file. | 80 | [2025-03-14·21:41:20.837]·[puff::index::jointLog]·[info]·Starting·the·Pufferfish·indexing·by·reading·the·GFA·binary·file. |
| 81 | [2026-04-16·01:19:23.175]·[puff::index::jointLog]·[info]·Setting·the·index/BinaryGfa·directory·sample_salmon_quasi_index | 81 | [2025-03-14·21:41:20.837]·[puff::index::jointLog]·[info]·Setting·the·index/BinaryGfa·directory·sample_salmon_quasi_index |
| 82 | size·=·19592 | 82 | size·=·19592 |
| 83 | ----------------------------------------- | 83 | ----------------------------------------- |
| 84 | |·Loading·contigs·|·Time·=·87.524·us | 84 | |·Loading·contigs·|·Time·=·108.21·us |
| 85 | ----------------------------------------- | 85 | ----------------------------------------- |
| 86 | size·=·19592 | 86 | size·=·19592 |
| 87 | ----------------------------------------- | 87 | ----------------------------------------- |
| 88 | |·Loading·contig·boundaries·|·Time·=·61.082·us | 88 | |·Loading·contig·boundaries·|·Time·=·51.36·us |
| 89 | ----------------------------------------- | 89 | ----------------------------------------- |
| 90 | Number·of·ones:·23 | 90 | Number·of·ones:·23 |
| 91 | Number·of·ones·per·inventory·item:·512 | 91 | Number·of·ones·per·inventory·item:·512 |
| 92 | Inventory·entries·filled:·1 | 92 | Inventory·entries·filled:·1 |
| 93 | 23 | 93 | 23 |
| 94 | [2026-04-16·01:19:23.175]·[puff::index::jointLog]·[info]·Done·wrapping·the·rank·vector·with·a·rank9sel·structure. | 94 | [2025-03-14·21:41:20.838]·[puff::index::jointLog]·[info]·Done·wrapping·the·rank·vector·with·a·rank9sel·structure. |
| 95 | [2026-04-16·01:19:23.175]·[puff::index::jointLog]·[info]·contig·count·for·validation:·23 | 95 | [2025-03-14·21:41:20.838]·[puff::index::jointLog]·[info]·contig·count·for·validation:·23 |
| 96 | [2026-04-16·01:19:23.175]·[puff::index::jointLog]·[info]·Total·#·of·Contigs·:·23 | 96 | [2025-03-14·21:41:20.838]·[puff::index::jointLog]·[info]·Total·#·of·Contigs·:·23 |
| 97 | [2026-04-16·01:19:23.175]·[puff::index::jointLog]·[info]·Total·#·of·numerical·Contigs·:·23 | 97 | [2025-03-14·21:41:20.838]·[puff::index::jointLog]·[info]·Total·#·of·numerical·Contigs·:·23 |
| 98 | [2026-04-16·01:19:23.175]·[puff::index::jointLog]·[info]·Total·#·of·contig·vec·entries:·36 | 98 | [2025-03-14·21:41:20.838]·[puff::index::jointLog]·[info]·Total·#·of·contig·vec·entries:·36 |
| 99 | [2026-04-16·01:19:23.175]·[puff::index::jointLog]·[info]·bits·per·offset·entry·6 | 99 | [2025-03-14·21:41:20.838]·[puff::index::jointLog]·[info]·bits·per·offset·entry·6 |
| 100 | [2026-04-16·01:19:23.175]·[puff::index::jointLog]·[info]·Done·constructing·the·contig·vector.·24 | 100 | [2025-03-14·21:41:20.838]·[puff::index::jointLog]·[info]·Done·constructing·the·contig·vector.·24 |
| 101 | [2026-04-16·01:19:23.175]·[puff::index::jointLog]·[info]·#·segments·=·23 | 101 | [2025-03-14·21:41:20.838]·[puff::index::jointLog]·[info]·#·segments·=·23 |
| 102 | [2026-04-16·01:19:23.175]·[puff::index::jointLog]·[info]·total·length·=·19,592 | 102 | [2025-03-14·21:41:20.838]·[puff::index::jointLog]·[info]·total·length·=·19,592 |
| 103 | [2026-04-16·01:19:23.175]·[puff::index::jointLog]·[info]·Reading·the·reference·files·... | 103 | [2025-03-14·21:41:20.838]·[puff::index::jointLog]·[info]·Reading·the·reference·files·... |
| 104 | [2026-04-16·01:19:23.176]·[puff::index::jointLog]·[info]·positional·integer·width·=·15 | 104 | [2025-03-14·21:41:20.858]·[puff::index::jointLog]·[info]·positional·integer·width·=·15 |
| 105 | [2026-04-16·01:19:23.176]·[puff::index::jointLog]·[info]·seqSize·=·19,592 | 105 | [2025-03-14·21:41:20.858]·[puff::index::jointLog]·[info]·seqSize·=·19,592 |
| 106 | [2026-04-16·01:19:23.176]·[puff::index::jointLog]·[info]·rankSize·=·19,592 | 106 | [2025-03-14·21:41:20.858]·[puff::index::jointLog]·[info]·rankSize·=·19,592 |
| 107 | [2026-04-16·01:19:23.176]·[puff::index::jointLog]·[info]·edgeVecSize·=·0 | 107 | [2025-03-14·21:41:20.858]·[puff::index::jointLog]·[info]·edgeVecSize·=·0 |
| 108 | [2026-04-16·01:19:23.176]·[puff::index::jointLog]·[info]·num·keys·=·18,902 | 108 | [2025-03-14·21:41:20.858]·[puff::index::jointLog]·[info]·num·keys·=·18,902 |
| 109 | \xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··4.65·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec.[Building·BooPHF]··4.65·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec.[Building·BooPHF]··4.65·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec.[Building·BooPHF]··4.65·%···elapsed[·...·truncated·by·diffoscope;·len:·78091,·SHA:·bd64e70ffdfc4b3af1d8e1eb4105e9755b2139f10d9eced53850bfd7b2c587b0·...·]··sec···remaining:···0·min·0··sec | 109 | \xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec.[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec.[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec.[Building·BooPHF]··4.65·%···elapsed[·...·truncated·by·diffoscope;·len:·78091,·SHA:·da18eebf6d47bfb41e5eb56b9e96686e8d92bf1e5aa3998d947b9e05f973942f·...·]··sec···remaining:···0·min·0··sec |
| 110 | [2026-04-16·01:19:23.190]·[puff::index::jointLog]·[info]·mphf·size·=·0.0125198·MB | 110 | [2025-03-14·21:41:21.397]·[puff::index::jointLog]·[info]·mphf·size·=·0.0125198·MB |
| 111 | [2026-04-16·01:19:23.190]·[puff::index::jointLog]·[info]·chunk·size·=·9,796 | 111 | [2025-03-14·21:41:21.397]·[puff::index::jointLog]·[info]·chunk·size·=·9,796 |
| 112 | [2026-04-16·01:19:23.190]·[puff::index::jointLog]·[info]·chunk·0·=·[0,·9,796) | 112 | [2025-03-14·21:41:21.397]·[puff::index::jointLog]·[info]·chunk·0·=·[0,·9,796) |
| 113 | [2026-04-16·01:19:23.190]·[puff::index::jointLog]·[info]·chunk·1·=·[9,796,·19,562) | 113 | [2025-03-14·21:41:21.397]·[puff::index::jointLog]·[info]·chunk·1·=·[9,796,·19,562) |
| 114 | [2026-04-16·01:19:23.192]·[puff::index::jointLog]·[info]·finished·populating·pos·vector | 114 | [2025-03-14·21:41:21.427]·[puff::index::jointLog]·[info]·finished·populating·pos·vector |
| 115 | [2026-04-16·01:19:23.192]·[puff::index::jointLog]·[info]·writing·index·components | 115 | [2025-03-14·21:41:21.427]·[puff::index::jointLog]·[info]·writing·index·components |
| 116 | [2026-04-16·01:19:23.192]·[puff::index::jointLog]·[info]·finished·writing·dense·pufferfish·index | 116 | [2025-03-14·21:41:21.428]·[puff::index::jointLog]·[info]·finished·writing·dense·pufferfish·index |
| 117 | [2026-04-16·01:19:23.193]·[jLog]·[info]·done·building·index | 117 | [2025-03-14·21:41:21.429]·[jLog]·[info]·done·building·index |
| 118 | for·info,·total·work·write·each··:·2.331····total·work·inram·from·level·3·:·4.322··total·work·raw·:·25.000· | 118 | for·info,·total·work·write·each··:·2.331····total·work·inram·from·level·3·:·4.322··total·work·raw·:·25.000· |
| 119 | Bitarray··········105024··bits·(100.00·%)···(array·+·ranks·) | 119 | Bitarray··········105024··bits·(100.00·%)···(array·+·ranks·) |
| 120 | final·hash·············0··bits·(0.00·%)·(nb·in·final·hash·0) | 120 | final·hash·············0··bits·(0.00·%)·(nb·in·final·hash·0) |
| 121 | ###·salmon·(selective-alignment-based)·v1.10.2 | 121 | ###·salmon·(selective-alignment-based)·v1.10.2 |
| 122 | ###·[·program·]·=>·salmon· | 122 | ###·[·program·]·=>·salmon· |
| 123 | ###·[·command·]·=>·quant· | 123 | ###·[·command·]·=>·quant· |
| 124 | ###·[·index·]·=>·{·sample_salmon_quasi_index·} | 124 | ###·[·index·]·=>·{·sample_salmon_quasi_index·} |
| 125 | ###·[·libType·]·=>·{·IU·} | 125 | ###·[·libType·]·=>·{·IU·} |
| 126 | ###·[·mates1·]·=>·{·reads_1.fastq·} | 126 | ###·[·mates1·]·=>·{·reads_1.fastq·} |
| 127 | ###·[·mates2·]·=>·{·reads_2.fastq·} | 127 | ###·[·mates2·]·=>·{·reads_2.fastq·} |
| 128 | ###·[·output·]·=>·{·sample_salmon_quasi_quant·} | 128 | ###·[·output·]·=>·{·sample_salmon_quasi_quant·} |
| 129 | Logs·will·be·written·to·sample_salmon_quasi_quant/logs | 129 | Logs·will·be·written·to·sample_salmon_quasi_quant/logs |
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