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1 ·ade58b4cb9ba1fcb513c7382395d1426·1649948·gnu-r·optional·r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb1 ·afc9c36d24542013481de059affb155d·1651536·gnu-r·optional·r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb
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r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb
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./usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.html
    
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139 </style>139 </style>
140 <link·rel="stylesheet"·href="https://cdn.jsdelivr.net/npm/katex/dist/katex.min.css">140 <link·rel="stylesheet"·href="https://cdn.jsdelivr.net/npm/katex/dist/katex.min.css">
141 </head>141 </head>
142 <body>142 <body>
143 <div·class="frontmatter">143 <div·class="frontmatter">
144 <div·class="title"><h1>Making·and·Utilizing·TxDb·Objects</h1></div>144 <div·class="title"><h1>Making·and·Utilizing·TxDb·Objects</h1></div>
145 <div·class="author"><h2>Marc·Carlson,·Patrick·Aboyoun,·Hervé·Pagès,·Seth·Falcon,·Martin·Morgan</h2></div>145 <div·class="author"><h2>Marc·Carlson,·Patrick·Aboyoun,·Hervé·Pagès,·Seth·Falcon,·Martin·Morgan</h2></div>
146 <div·class="date"><h3>Thursday,·April·25,·2024</h3></div>146 <div·class="date"><h3>Thursday,·May·29,·2025</h3></div>
147 </div>147 </div>
148 <div·class="body">148 <div·class="body">
149 <h2·id="introduction">Introduction</h2>149 <h2·id="introduction">Introduction</h2>
150 <p>The·<code>GenomicFeatures</code>·package·retrieves·and·manages150 <p>The·<code>GenomicFeatures</code>·package·retrieves·and·manages
151 transcript-related·features·from·the·UCSC·Genome151 transcript-related·features·from·the·UCSC·Genome
152 Bioinformatics\footnote{(<a·href="https://genome.ucsc.edu/)%7D">https://genome.ucsc.edu/)}</a>·and152 Bioinformatics\footnote{(<a·href="https://genome.ucsc.edu/)%7D">https://genome.ucsc.edu/)}</a>·and
153 BioMart\footnote{(<a·href="http://www.biomart.org/)%7D">http://www.biomart.org/)}</a>·data·resources.·The153 BioMart\footnote{(<a·href="http://www.biomart.org/)%7D">http://www.biomart.org/)}</a>·data·resources.·The
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1 ******·Making·and·Utilizing·TxDb·Objects·******1 ******·Making·and·Utilizing·TxDb·Objects·******
2 *****·Marc·Carlson,·Patrick·Aboyoun,·Hervé·Pagès,·Seth·Falcon,·Martin·Morgan2 *****·Marc·Carlson,·Patrick·Aboyoun,·Hervé·Pagès,·Seth·Falcon,·Martin·Morgan
3 *****3 *****
4 ****·Thursday,·April·25,·2024·****4 ****·Thursday,·May·29,·2025·****
5 *****·Introduction·*****5 *****·Introduction·*****
6 The·GenomicFeatures·package·retrieves·and·manages·transcript-related·features6 The·GenomicFeatures·package·retrieves·and·manages·transcript-related·features
7 from·the·UCSC·Genome·Bioinformatics\footnote{(https://genome.ucsc.edu/)}·and7 from·the·UCSC·Genome·Bioinformatics\footnote{(https://genome.ucsc.edu/)}·and
8 BioMart\footnote{(http://www.biomart.org/)}·data·resources.·The·package·is8 BioMart\footnote{(http://www.biomart.org/)}·data·resources.·The·package·is
9 useful·for·ChIP-chip,·ChIP-seq,·and·RNA-seq·analyses.9 useful·for·ChIP-chip,·ChIP-seq,·and·RNA-seq·analyses.
10 suppressPackageStartupMessages(library('GenomicFeatures'))10 suppressPackageStartupMessages(library('GenomicFeatures'))
11 ##·Error·in·library("GenomicFeatures"):·there·is·no·package·called11 ##·Error·in·library("GenomicFeatures"):·there·is·no·package·called
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1 ---1 ---
2 title:·"Making·and·Utilizing·TxDb·Objects"2 title:·"Making·and·Utilizing·TxDb·Objects"
3 author:·"Marc·Carlson,·Patrick·Aboyoun,·Hervé·Pagès,·Seth·Falcon,·Martin·Morgan"3 author:·"Marc·Carlson,·Patrick·Aboyoun,·Hervé·Pagès,·Seth·Falcon,·Martin·Morgan"
4 date:·"Thursday,·April·25,·2024"4 date:·"Thursday,·May·29,·2025"
5 package:·GenomicFeatures5 package:·GenomicFeatures
6 output:6 output:
7 ··BiocStyle::html_document:7 ··BiocStyle::html_document:
8 ····df_print:·paged8 ····df_print:·paged
9 ····toc_float:·true9 ····toc_float:·true
10 vignette:·>10 vignette:·>
11 ··%\VignetteIndexEntry{Making·and·Utilizing·TxDb·Objects}11 ··%\VignetteIndexEntry{Making·and·Utilizing·TxDb·Objects}
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