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1 ·befeea59565534ba6062dcee770e7ffc·1435380·python·optional·python-pysam-tests_0.22.1+ds-2_all.deb1 ·befeea59565534ba6062dcee770e7ffc·1435380·python·optional·python-pysam-tests_0.22.1+ds-2_all.deb
2 ·32d68fd1639f9f192e31513614ee5627·9424764·debug·optional·python3-pysam-dbgsym_0.22.1+ds-2_amd64.deb2 ·32d68fd1639f9f192e31513614ee5627·9424764·debug·optional·python3-pysam-dbgsym_0.22.1+ds-2_amd64.deb
3 ·8181db15420da55fcc2254d85e8cb4f3·3523116·python·optional·python3-pysam_0.22.1+ds-2_amd64.deb3 ·8a6f10643eaad055b85f4907d801cbe5·3523568·python·optional·python3-pysam_0.22.1+ds-2_amd64.deb
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python3-pysam_0.22.1+ds-2_amd64.deb
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1 -rw-r--r--···0········0········0········4·2024-05-29·11:23:03.000000·debian-binary1 -rw-r--r--···0········0········0········4·2024-05-29·11:23:03.000000·debian-binary
2 -rw-r--r--···0········0········0·····9116·2024-05-29·11:23:03.000000·control.tar.xz2 -rw-r--r--···0········0········0·····9116·2024-05-29·11:23:03.000000·control.tar.xz
3 -rw-r--r--···0········0········0··3513808·2024-05-29·11:23:03.000000·data.tar.xz3 -rw-r--r--···0········0········0··3514260·2024-05-29·11:23:03.000000·data.tar.xz
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control.tar.xz
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control.tar
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./md5sums
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./md5sums
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data.tar.xz
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./usr/lib/python3/dist-packages/pysam/libcbcftools.c
    
Offset 35, 69 lines modifiedOffset 35, 69 lines modified
35 ············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam",35 ············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam",
36 ············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam",36 ············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam",
37 ············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam"37 ············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam"
38 ········],38 ········],
39 ········"name":·"pysam.libcbcftools",39 ········"name":·"pysam.libcbcftools",
40 ········"sources":·[40 ········"sources":·[
41 ············"pysam/libcbcftools.pyx",41 ············"pysam/libcbcftools.pyx",
42 ············"bcftools/vcffilter.c.pysam.c", 
43 ············"bcftools/bam_sample.c.pysam.c", 
44 ············"bcftools/bam2bcf_iaux.c.pysam.c", 
45 ············"bcftools/ccall.c.pysam.c",42 ············"bcftools/ccall.c.pysam.c",
46 ············"bcftools/vcfplugin.c.pysam.c", 
47 ············"bcftools/vcfcall.c.pysam.c", 
48 ············"bcftools/vcfbuf.c.pysam.c", 
49 ············"bcftools/hclust.c.pysam.c", 
50 ············"bcftools/vcfnorm.c.pysam.c",43 ············"bcftools/str_finder.c.pysam.c",
51 ············"bcftools/vcfstats.c.pysam.c", 
52 ············"bcftools/cols.c.pysam.c", 
53 ············"bcftools/prob1.c.pysam.c",44 ············"bcftools/prob1.c.pysam.c",
 45 ············"bcftools/consensus.c.pysam.c",
54 ············"bcftools/gvcf.c.pysam.c",46 ············"bcftools/cols.c.pysam.c",
55 ············"bcftools/vcfview.c.pysam.c", 
56 ············"bcftools/vcmp.c.pysam.c", 
57 ············"bcftools/mpileup.c.pysam.c", 
58 ············"bcftools/vcfcnv.c.pysam.c",47 ············"bcftools/vcfconcat.c.pysam.c",
59 ············"bcftools/abuf.c.pysam.c", 
60 ············"bcftools/convert.c.pysam.c", 
61 ············"bcftools/em.c.pysam.c",48 ············"bcftools/extsort.c.pysam.c",
62 ············"bcftools/bcftools.pysam.c",49 ············"bcftools/bcftools.pysam.c",
 50 ············"bcftools/version.c.pysam.c",
 51 ············"bcftools/vcfcnv.c.pysam.c",
 52 ············"bcftools/vcfbuf.c.pysam.c",
63 ············"bcftools/tsv2vcf.c.pysam.c",53 ············"bcftools/tsv2vcf.c.pysam.c",
 54 ············"bcftools/HMM.c.pysam.c",
64 ············"bcftools/gff.c.pysam.c",55 ············"bcftools/gff.c.pysam.c",
 56 ············"bcftools/reheader.c.pysam.c",
 57 ············"bcftools/vcfcall.c.pysam.c",
65 ············"bcftools/dist.c.pysam.c",58 ············"bcftools/csq.c.pysam.c",
 59 ············"bcftools/vcfconvert.c.pysam.c",
 60 ············"bcftools/vcfview.c.pysam.c",
 61 ············"bcftools/gvcf.c.pysam.c",
 62 ············"bcftools/vcffilter.c.pysam.c",
66 ············"bcftools/read_consensus.c.pysam.c",63 ············"bcftools/read_consensus.c.pysam.c",
67 ············"bcftools/vcfannotate.c.pysam.c", 
68 ············"bcftools/vcfsom.c.pysam.c", 
69 ············"bcftools/bam2bcf_indel.c.pysam.c", 
70 ············"bcftools/regidx.c.pysam.c", 
71 ············"bcftools/vcfindex.c.pysam.c", 
72 ············"bcftools/filter.c.pysam.c",64 ············"bcftools/filter.c.pysam.c",
 65 ············"bcftools/dist.c.pysam.c",
73 ············"bcftools/ploidy.c.pysam.c",66 ············"bcftools/regidx.c.pysam.c",
 67 ············"bcftools/bam2bcf_iaux.c.pysam.c",
 68 ············"bcftools/main.c.pysam.c",
 69 ············"bcftools/abuf.c.pysam.c",
74 ············"bcftools/bam2bcf.c.pysam.c",70 ············"bcftools/bam2bcf.c.pysam.c",
75 ············"bcftools/consensus.c.pysam.c", 
76 ············"bcftools/extsort.c.pysam.c", 
77 ············"bcftools/version.c.pysam.c", 
78 ············"bcftools/csq.c.pysam.c",71 ············"bcftools/vcfisec.c.pysam.c",
 72 ············"bcftools/vcfroh.c.pysam.c",
79 ············"bcftools/vcfhead.c.pysam.c",73 ············"bcftools/vcfhead.c.pysam.c",
80 ············"bcftools/reheader.c.pysam.c", 
81 ············"bcftools/bin.c.pysam.c",74 ············"bcftools/bam2bcf_indel.c.pysam.c",
 75 ············"bcftools/bam_sample.c.pysam.c",
 76 ············"bcftools/vcfquery.c.pysam.c",
82 ············"bcftools/vcfgtcheck.c.pysam.c",77 ············"bcftools/vcfgtcheck.c.pysam.c",
83 ············"bcftools/vcfroh.c.pysam.c", 
84 ············"bcftools/kmin.c.pysam.c", 
85 ············"bcftools/str_finder.c.pysam.c", 
86 ············"bcftools/smpl_ilist.c.pysam.c",78 ············"bcftools/smpl_ilist.c.pysam.c",
 79 ············"bcftools/vcfsom.c.pysam.c",
 80 ············"bcftools/vcmp.c.pysam.c",
 81 ············"bcftools/vcfannotate.c.pysam.c",
 82 ············"bcftools/vcfindex.c.pysam.c",
 83 ············"bcftools/vcfnorm.c.pysam.c",
87 ············"bcftools/main.c.pysam.c",84 ············"bcftools/bin.c.pysam.c",
88 ············"bcftools/vcfconvert.c.pysam.c", 
89 ············"bcftools/vcfquery.c.pysam.c",85 ············"bcftools/mpileup.c.pysam.c",
90 ············"bcftools/vcfmerge.c.pysam.c",86 ············"bcftools/vcfmerge.c.pysam.c",
91 ············"bcftools/vcfconcat.c.pysam.c", 
92 ············"bcftools/mcall.c.pysam.c",87 ············"bcftools/mcall.c.pysam.c",
93 ············"bcftools/vcfsort.c.pysam.c", 
94 ············"bcftools/vcfisec.c.pysam.c", 
95 ············"bcftools/tabix.c.pysam.c",88 ············"bcftools/tabix.c.pysam.c",
 89 ············"bcftools/hclust.c.pysam.c",
 90 ············"bcftools/convert.c.pysam.c",
 91 ············"bcftools/ploidy.c.pysam.c",
96 ············"bcftools/HMM.c.pysam.c"92 ············"bcftools/em.c.pysam.c",
 93 ············"bcftools/vcfsort.c.pysam.c",
 94 ············"bcftools/vcfplugin.c.pysam.c",
 95 ············"bcftools/kmin.c.pysam.c",
 96 ············"bcftools/vcfstats.c.pysam.c"
97 ········]97 ········]
98 ····},98 ····},
99 ····"module_name":·"pysam.libcbcftools"99 ····"module_name":·"pysam.libcbcftools"
100 }100 }
101 END:·Cython·Metadata·*/101 END:·Cython·Metadata·*/
  
102 #ifndef·PY_SSIZE_T_CLEAN102 #ifndef·PY_SSIZE_T_CLEAN
4.47 KB
./usr/lib/python3/dist-packages/pysam/libcsamtools.c
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34 ············"/usr/lib/x86_64-linux-gnu",34 ············"/usr/lib/x86_64-linux-gnu",
35 ············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam",35 ············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam",
36 ············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam"36 ············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam"
37 ········],37 ········],
38 ········"name":·"pysam.libcsamtools",38 ········"name":·"pysam.libcsamtools",
39 ········"sources":·[39 ········"sources":·[
40 ············"pysam/libcsamtools.pyx",40 ············"pysam/libcsamtools.pyx",
41 ············"samtools/bam_markdup.c.pysam.c", 
42 ············"samtools/sam_utils.c.pysam.c", 
43 ············"samtools/bam_rmdupse.c.pysam.c", 
44 ············"samtools/bam_sort.c.pysam.c", 
45 ············"samtools/dict.c.pysam.c", 
46 ············"samtools/bam_samples.c.pysam.c", 
47 ············"samtools/bam2depth.c.pysam.c", 
48 ············"samtools/sample.c.pysam.c", 
49 ············"samtools/bam_md.c.pysam.c",41 ············"samtools/bam_md.c.pysam.c",
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50 ············"samtools/tmp_file.c.pysam.c",44 ············"samtools/bam_lpileup.c.pysam.c",
 45 ············"samtools/cut_target.c.pysam.c",
51 ············"samtools/bam.c.pysam.c",46 ············"samtools/bam.c.pysam.c",
 47 ············"samtools/faidx.c.pysam.c",
 48 ············"samtools/amplicon_stats.c.pysam.c",
 49 ············"samtools/bam_addrprg.c.pysam.c",
 50 ············"samtools/bam_markdup.c.pysam.c",
 51 ············"samtools/bam_cat.c.pysam.c",
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 53 ············"samtools/bam_samples.c.pysam.c",
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52 ············"samtools/bam_rmdup.c.pysam.c",55 ············"samtools/bam_rmdup.c.pysam.c",
 56 ············"samtools/bam_plcmd.c.pysam.c",
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53 ············"samtools/reset.c.pysam.c",59 ············"samtools/bam2depth.c.pysam.c",
54 ············"samtools/bamtk.c.pysam.c",60 ············"samtools/bam_sort.c.pysam.c",
55 ············"samtools/cut_target.c.pysam.c", 
56 ············"samtools/bam_ampliconclip.c.pysam.c",61 ············"samtools/bam_ampliconclip.c.pysam.c",
57 ············"samtools/bam_stat.c.pysam.c", 
58 ············"samtools/bam_addrprg.c.pysam.c", 
59 ············"samtools/bam_lpileup.c.pysam.c", 
60 ············"samtools/cram_size.c.pysam.c", 
61 ············"samtools/bam_mate.c.pysam.c", 
62 ············"samtools/stats_isize.c.pysam.c", 
63 ············"samtools/bamshuf.c.pysam.c", 
64 ············"samtools/bam_split.c.pysam.c", 
65 ············"samtools/reference.c.pysam.c", 
66 ············"samtools/stats.c.pysam.c", 
67 ············"samtools/bedidx.c.pysam.c", 
68 ············"samtools/bam_index.c.pysam.c",62 ············"samtools/bam_index.c.pysam.c",
69 ············"samtools/bam_plcmd.c.pysam.c",63 ············"samtools/bam_mate.c.pysam.c",
70 ············"samtools/faidx.c.pysam.c", 
71 ············"samtools/bam_reheader.c.pysam.c", 
72 ············"samtools/bam_quickcheck.c.pysam.c", 
73 ············"samtools/padding.c.pysam.c",64 ············"samtools/padding.c.pysam.c",
74 ············"samtools/bam_aux.c.pysam.c",65 ············"samtools/bam_rmdupse.c.pysam.c",
75 ············"samtools/bam_fastq.c.pysam.c", 
76 ············"samtools/bedcov.c.pysam.c",66 ············"samtools/bedcov.c.pysam.c",
 67 ············"samtools/bam_quickcheck.c.pysam.c",
77 ············"samtools/samtools.pysam.c",68 ············"samtools/reset.c.pysam.c",
78 ············"samtools/bam_cat.c.pysam.c",69 ············"samtools/bam_fastq.c.pysam.c",
79 ············"samtools/sam_view.c.pysam.c",70 ············"samtools/bam_reheader.c.pysam.c",
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80 ············"samtools/bam_plbuf.c.pysam.c",72 ············"samtools/bam_split.c.pysam.c",
81 ············"samtools/bam_color.c.pysam.c",73 ············"samtools/sample.c.pysam.c",
82 ············"samtools/bam_import.c.pysam.c",74 ············"samtools/bedidx.c.pysam.c",
83 ············"samtools/bam_consensus.c.pysam.c", 
84 ············"samtools/bam_flags.c.pysam.c",75 ············"samtools/bam_flags.c.pysam.c",
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85 ············"samtools/phase.c.pysam.c",79 ············"samtools/phase.c.pysam.c",
86 ············"samtools/amplicon_stats.c.pysam.c", 
87 ············"samtools/coverage.c.pysam.c",80 ············"samtools/bam_color.c.pysam.c",
 81 ············"samtools/bamshuf.c.pysam.c",
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 83 ············"samtools/bamtk.c.pysam.c",
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88 ············"samtools/sam_opts.c.pysam.c",85 ············"samtools/sam_opts.c.pysam.c",
 86 ············"samtools/bam_import.c.pysam.c",
 87 ············"samtools/stats.c.pysam.c",
 88 ············"samtools/cram_size.c.pysam.c",
89 ············"samtools/consensus_pileup.c.pysam.c",89 ············"samtools/sam_utils.c.pysam.c",
90 ············"samtools/lz4/lz4.c"90 ············"samtools/lz4/lz4.c"
91 ········]91 ········]
92 ····},92 ····},
93 ····"module_name":·"pysam.libcsamtools"93 ····"module_name":·"pysam.libcsamtools"
94 }94 }
95 END:·Cython·Metadata·*/95 END:·Cython·Metadata·*/