/usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5x5Jd5wg/python-pysam_0.22.1+ds-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5x5Jd5wg/python-pysam_0.22.1+ds-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5x5Jd5wg/python-pysam_0.22.1+ds-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5x5Jd5wg/b1/python-pysam_0.22.1+ds-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.5x5Jd5wg/b2/python-pysam_0.22.1+ds-2

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python3-pysam_0.22.1+ds-2_amd64.deb ¶

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367 B

file list ¶

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control.tar.xz ¶

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control.tar ¶

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./md5sums ¶

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./md5sums ¶

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data.tar ¶

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./usr/lib/python3/dist-packages/pysam/libcbcftools.c ¶

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./usr/lib/python3/dist-packages/pysam/libcsamtools.c ¶

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Offset 1, 4 lines modified		Offset 1, 4 lines modified

1	·befeea59565534ba6062dcee770e7ffc·1435380·python·optional·python-pysam-tests_0.22.1+ds-2_all.deb	1	·befeea59565534ba6062dcee770e7ffc·1435380·python·optional·python-pysam-tests_0.22.1+ds-2_all.deb
2	·1627c2b2c73c2313f21f8d3ceef7c4c4·9423500·debug·optional·python3-pysam-dbgsym_0.22.1+ds-2_amd64.deb	2	·1627c2b2c73c2313f21f8d3ceef7c4c4·9423500·debug·optional·python3-pysam-dbgsym_0.22.1+ds-2_amd64.deb
3	·ff150~~be11aa~~2~~6ab5~~7a75ce2d~~4a9~~ea~~14f~~·352~~2736~~·python·optional·python3-pysam_0.22.1+ds-2_amd64.deb	3	·a45c30c262ccc17717e2de06e11a9d16·3523284·python·optional·python3-pysam_0.22.1+ds-2_amd64.deb


Offset 1, 3 lines modified		Offset 1, 3 lines modified
1	-rw-r--r--···0········0········0········4·2024-05-29·11:23:03.000000·debian-binary	1	-rw-r--r--···0········0········0········4·2024-05-29·11:23:03.000000·debian-binary
2	-rw-r--r--···0········0········0·····9116·2024-05-29·11:23:03.000000·control.tar.xz	2	-rw-r--r--···0········0········0·····9116·2024-05-29·11:23:03.000000·control.tar.xz
3	-rw-r--r--···0········0········0··3513~~428~~·2024-05-29·11:23:03.000000·data.tar.xz	3	-rw-r--r--···0········0········0··3513976·2024-05-29·11:23:03.000000·data.tar.xz


Offset 35, 69 lines modified		Offset 35, 69 lines modified
35	············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam",	35	············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam",
36	············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam",	36	············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam",
37	············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam"	37	············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam"
38	········],	38	········],
39	········"name":·"pysam.libcbcftools",	39	········"name":·"pysam.libcbcftools",
40	········"sources":·[	40	········"sources":·[
41	············"pysam/libcbcftools.pyx",	41	············"pysam/libcbcftools.pyx",
		42	············"bcftools/vcffilter.c.pysam.c",
		43	············"bcftools/bam_sample.c.pysam.c",
		44	············"bcftools/bam2bcf_iaux.c.pysam.c",
42	············"bcftools/ccall.c.pysam.c",	45	············"bcftools/ccall.c.pysam.c",
43	············"bcftools/s~~tr_finder~~.c.pysam.c",	46	············"bcftools/vcfplugin.c.pysam.c",
		47	············"bcftools/vcfcall.c.pysam.c",
44	············"bcftools/~~pro~~b1.c.pysam.c",	48	············"bcftools/vcfbuf.c.pysam.c",
45	············"bcftools/co~~nsen~~sus.c.pysam.c",	49	············"bcftools/hclust.c.pysam.c",
		50	············"bcftools/vcfnorm.c.pysam.c",
		51	············"bcftools/vcfstats.c.pysam.c",
46	············"bcftools/cols.c.pysam.c",	52	············"bcftools/cols.c.pysam.c",
		53	············"bcftools/prob1.c.pysam.c",
47	············"bcftools/vcf~~concat~~.c.pysam.c",	54	············"bcftools/gvcf.c.pysam.c",
48	············"bcftools/~~extsort~~.c.pysam.c",	55	············"bcftools/vcfview.c.pysam.c",
49	············"bcftools/bcftools.pysam.c",
50	············"bcftools/v~~ersion~~.c.pysam.c",	56	············"bcftools/vcmp.c.pysam.c",
		57	············"bcftools/mpileup.c.pysam.c",
51	············"bcftools/vcfcnv.c.pysam.c",	58	············"bcftools/vcfcnv.c.pysam.c",
52	············"bcftools/vcfbuf.c.pysam.c",	59	············"bcftools/abuf.c.pysam.c",
		60	············"bcftools/convert.c.pysam.c",
		61	············"bcftools/em.c.pysam.c",
		62	············"bcftools/bcftools.pysam.c",
53	············"bcftools/tsv2vcf.c.pysam.c",	63	············"bcftools/tsv2vcf.c.pysam.c",
54	············"bcftools/HMM.c.pysam.c",
55	············"bcftools/gff.c.pysam.c",	64	············"bcftools/gff.c.pysam.c",
56	············"bcftools/reheader.c.pysam.c",
57	············"bcftools/vcfcall.c.pysam.c",
58	············"bcftools/csq.c.pysam.c",
59	············"bcftools/vcfconvert.c.pysam.c",
60	············"bcftools/vcfview.c.pysam.c",
61	············"bcftools/gvcf.c.pysam.c",
62	············"bcftools/vcffilter.c.pysam.c",
63	············"bcftools/read_consensus.c.pysam.c",
64	············"bcftools/filter.c.pysam.c",
65	············"bcftools/dist.c.pysam.c",	65	············"bcftools/dist.c.pysam.c",
		66	············"bcftools/read_consensus.c.pysam.c",
		67	············"bcftools/vcfannotate.c.pysam.c",
		68	············"bcftools/vcfsom.c.pysam.c",
		69	············"bcftools/bam2bcf_indel.c.pysam.c",
66	············"bcftools/regidx.c.pysam.c",	70	············"bcftools/regidx.c.pysam.c",
67	············"bcftools/bam2bcf_iaux.c.pysam.c",
68	············"bcftools/main.c.pysam.c",	71	············"bcftools/vcfindex.c.pysam.c",
69	············"bcftools/~~abuf~~.c.pysam.c",	72	············"bcftools/filter.c.pysam.c",
		73	············"bcftools/ploidy.c.pysam.c",
70	············"bcftools/bam2bcf.c.pysam.c",	74	············"bcftools/bam2bcf.c.pysam.c",
		75	············"bcftools/consensus.c.pysam.c",
		76	············"bcftools/extsort.c.pysam.c",
		77	············"bcftools/version.c.pysam.c",
71	············"bcftools/vcfisec.c.pysam.c",	78	············"bcftools/csq.c.pysam.c",
72	············"bcftools/vcfroh.c.pysam.c",
73	············"bcftools/vcfhead.c.pysam.c",	79	············"bcftools/vcfhead.c.pysam.c",
		80	············"bcftools/reheader.c.pysam.c",
74	············"bcftools/b~~am2bcf_~~in~~del~~.c.pysam.c",	81	············"bcftools/bin.c.pysam.c",
75	············"bcftools/bam_sample.c.pysam.c",
76	············"bcftools/vcfquery.c.pysam.c",
77	············"bcftools/vcfgtcheck.c.pysam.c",	82	············"bcftools/vcfgtcheck.c.pysam.c",
		83	············"bcftools/vcfroh.c.pysam.c",
		84	············"bcftools/kmin.c.pysam.c",
		85	············"bcftools/str_finder.c.pysam.c",
78	············"bcftools/smpl_ilist.c.pysam.c",	86	············"bcftools/smpl_ilist.c.pysam.c",
79	············"bcftools/vcfsom.c.pysam.c",
80	············"bcftools/vcmp.c.pysam.c",
81	············"bcftools/vcfannotate.c.pysam.c",
82	············"bcftools/vcfindex.c.pysam.c",
83	············"bcftools/vcfnorm.c.pysam.c",
84	············"bcftools/bin.c.pysam.c",	87	············"bcftools/main.c.pysam.c",
		88	············"bcftools/vcfconvert.c.pysam.c",
85	············"bcftools/~~mpil~~eup.c.pysam.c",	89	············"bcftools/vcfquery.c.pysam.c",
86	············"bcftools/vcfmerge.c.pysam.c",	90	············"bcftools/vcfmerge.c.pysam.c",
		91	············"bcftools/vcfconcat.c.pysam.c",
87	············"bcftools/mcall.c.pysam.c",	92	············"bcftools/mcall.c.pysam.c",
88	············"bcftools/tabix.c.pysam.c",
89	············"bcftools/hclust.c.pysam.c",
90	············"bcftools/convert.c.pysam.c",
91	············"bcftools/ploidy.c.pysam.c",
92	············"bcftools/em.c.pysam.c",
93	············"bcftools/vcfsort.c.pysam.c",	93	············"bcftools/vcfsort.c.pysam.c",
94	············"bcftools/vcfpl~~ugin~~.c.pysam.c",	94	············"bcftools/vcfisec.c.pysam.c",
95	············"bcftools/kmin.c.pysam.c",	95	············"bcftools/tabix.c.pysam.c",
96	············"bcftools/~~vcfstats~~.c.pysam.c"	96	············"bcftools/HMM.c.pysam.c"
97	········]	97	········]
98	····},	98	····},
99	····"module_name":·"pysam.libcbcftools"	99	····"module_name":·"pysam.libcbcftools"
100	}	100	}
101	END:·Cython·Metadata·*/	101	END:·Cython·Metadata·*/

102	#ifndef·PY_SSIZE_T_CLEAN	102	#ifndef·PY_SSIZE_T_CLEAN


Offset 34, 63 lines modified		Offset 34, 63 lines modified
34	············"/usr/lib/x86_64-linux-gnu",	34	············"/usr/lib/x86_64-linux-gnu",
35	············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam",	35	············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam",
36	············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam"	36	············"/build/reproducible-path/python-pysam-0.22.1+ds/.pybuild/cpython3_3.12_pysam/build/pysam"
37	········],	37	········],
38	········"name":·"pysam.libcsamtools",	38	········"name":·"pysam.libcsamtools",
39	········"sources":·[	39	········"sources":·[
40	············"pysam/libcsamtools.pyx",	40	············"pysam/libcsamtools.pyx",
41	············"samtools/bam_md.c.pysam.c",
42	············"samtools/bam_consensus.c.pysam.c",
43	············"samtools/consensus_pileup.c.pysam.c",
44	············"samtools/bam_lpileup.c.pysam.c",
45	············"samtools/cut_target.c.pysam.c",
46	············"samtools/bam.c.pysam.c",
47	············"samtools/faidx.c.pysam.c",
48	············"samtools/amplicon_stats.c.pysam.c",
49	············"samtools/bam_addrprg.c.pysam.c",
50	············"samtools/bam_markdup.c.pysam.c",	41	············"samtools/bam_markdup.c.pysam.c",
		42	············"samtools/sam_utils.c.pysam.c",
		43	············"samtools/bam_rmdupse.c.pysam.c",
51	············"samtools/bam_cat.c.pysam.c",	44	············"samtools/bam_sort.c.pysam.c",
52	············"samtools/~~sam_~~view.c.pysam.c",	45	············"samtools/dict.c.pysam.c",
53	············"samtools/bam_samples.c.pysam.c",	46	············"samtools/bam_samples.c.pysam.c",
54	············"samtools/coverage.c.pysam.c",
55	············"samtools/bam_rmdup.c.pysam.c",
56	············"samtools/bam_plcmd.c.pysam.c",
57	············"samtools/samtools.pysam.c",
58	············"samtools/bam_aux.c.pysam.c",
59	············"samtools/bam2depth.c.pysam.c",	47	············"samtools/bam2depth.c.pysam.c",
		48	············"samtools/sample.c.pysam.c",
		49	············"samtools/bam_md.c.pysam.c",
		50	············"samtools/tmp_file.c.pysam.c",
		51	············"samtools/bam.c.pysam.c",
		52	············"samtools/bam_rmdup.c.pysam.c",
		53	············"samtools/reset.c.pysam.c",
60	············"samtools/bam~~_so~~rt.c.pysam.c",	54	············"samtools/bamtk.c.pysam.c",
		55	············"samtools/cut_target.c.pysam.c",
61	············"samtools/bam_ampliconclip.c.pysam.c",	56	············"samtools/bam_ampliconclip.c.pysam.c",
		57	············"samtools/bam_stat.c.pysam.c",
		58	············"samtools/bam_addrprg.c.pysam.c",
62	············"samtools/bam_i~~ndex~~.c.pysam.c",	59	············"samtools/bam_lpileup.c.pysam.c",
		60	············"samtools/cram_size.c.pysam.c",
63	············"samtools/bam_mate.c.pysam.c",	61	············"samtools/bam_mate.c.pysam.c",
64	············"samtools/padding.c.pysam.c",
65	············"samtools/~~bam_rmdups~~e.c.pysam.c",	62	············"samtools/stats_isize.c.pysam.c",
66	············"samtools/bedcov.c.pysam.c",
67	············"samtools/bam_quickcheck.c.pysam.c",
68	············"samtools/reset.c.pysam.c",
69	············"samtools/bam_f~~astq~~.c.pysam.c",	63	············"samtools/bamshuf.c.pysam.c",
70	············"samtools/bam_reheader.c.pysam.c",
71	············"samtools/reference.c.pysam.c",
72	············"samtools/bam_split.c.pysam.c",	64	············"samtools/bam_split.c.pysam.c",
		65	············"samtools/reference.c.pysam.c",
73	············"samtools/sa~~mple~~.c.pysam.c",	66	············"samtools/stats.c.pysam.c",
74	············"samtools/bedidx.c.pysam.c",	67	············"samtools/bedidx.c.pysam.c",
		68	············"samtools/bam_index.c.pysam.c",
		69	············"samtools/bam_plcmd.c.pysam.c",
		70	············"samtools/faidx.c.pysam.c",
		71	············"samtools/bam_reheader.c.pysam.c",
		72	············"samtools/bam_quickcheck.c.pysam.c",
		73	············"samtools/padding.c.pysam.c",
		74	············"samtools/bam_aux.c.pysam.c",
		75	············"samtools/bam_fastq.c.pysam.c",
		76	············"samtools/bedcov.c.pysam.c",
		77	············"samtools/samtools.pysam.c",
		78	············"samtools/bam_cat.c.pysam.c",
		79	············"samtools/sam_view.c.pysam.c",
		80	············"samtools/bam_plbuf.c.pysam.c",
		81	············"samtools/bam_color.c.pysam.c",
		82	············"samtools/bam_import.c.pysam.c",
		83	············"samtools/bam_consensus.c.pysam.c",
75	············"samtools/bam_flags.c.pysam.c",	84	············"samtools/bam_flags.c.pysam.c",
76	············"samtools/stats_isize.c.pysam.c",
77	············"samtools/dict.c.pysam.c",
78	············"samtools/bam_stat.c.pysam.c",
79	············"samtools/phase.c.pysam.c",	85	············"samtools/phase.c.pysam.c",
		86	············"samtools/amplicon_stats.c.pysam.c",
80	············"samtools/b~~am_color~~.c.pysam.c",	87	············"samtools/coverage.c.pysam.c",
81	············"samtools/bamshuf.c.pysam.c",
82	············"samtools/bam_plbuf.c.pysam.c",
83	············"samtools/bamtk.c.pysam.c",
84	············"samtools/tmp_file.c.pysam.c",
85	············"samtools/sam_opts.c.pysam.c",	88	············"samtools/sam_opts.c.pysam.c",
86	············"samtools/bam_import.c.pysam.c",
87	············"samtools/stats.c.pysam.c",
88	············"samtools/c~~ram~~_size.c.pysam.c",	89	············"samtools/consensus_pileup.c.pysam.c",
89	············"samtools/sam_utils.c.pysam.c",
90	············"samtools/lz4/lz4.c"	90	············"samtools/lz4/lz4.c"
91	········]	91	········]
92	····},	92	····},
93	····"module_name":·"pysam.libcsamtools"	93	····"module_name":·"pysam.libcsamtools"
94	}	94	}
95	END:·Cython·Metadata·*/	95	END:·Cython·Metadata·*/