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| Offset 554, 24 lines modified | Offset 554, 24 lines modified |
| 554 | ············List·of·hydrogen·bonds·between·the·selection·1·or·selection·2·and | 554 | ············List·of·hydrogen·bonds·between·the·selection·1·or·selection·2·and |
| 555 | ············the·bridging·waters,·for·each·frame. | 555 | ············the·bridging·waters,·for·each·frame. |
| 556 | ············Added·in·version·2.0.0. | 556 | ············Added·in·version·2.0.0. |
| 557 | ········timeseries_\x8¶ | 557 | ········timeseries_\x8¶ |
| 558 | ············Alias·to·the·_\x8r_\x8e_\x8s_\x8u_\x8l_\x8t_\x8s_\x8._\x8t_\x8i_\x8m_\x8e_\x8s_\x8e_\x8r_\x8i_\x8e_\x8s·attribute. | 558 | ············Alias·to·the·_\x8r_\x8e_\x8s_\x8u_\x8l_\x8t_\x8s_\x8._\x8t_\x8i_\x8m_\x8e_\x8s_\x8e_\x8r_\x8i_\x8e_\x8s·attribute. |
| 559 | ············Deprecated·since·version·2.0.0:·Will·be·removed·in·MDAnalysis | 559 | ············Deprecated·since·version·2.0.0:·Will·be·removed·in·MDAnalysis |
| 560 | ············3.0.0.·Please·use·_\x8r_\x8e_\x8s_\x8u_\x8l_\x8t_\x8s_\x8._\x8t_\x8i_\x8m_\x8e_\x8s_\x8e_\x8r_\x8i_\x8e_\x8s·instead. | 560 | ············3.0.0.·Please·use·_\x8r_\x8e_\x8s_\x8u_\x8l_\x8t_\x8s_\x8._\x8t_\x8i_\x8m_\x8e_\x8s_\x8e_\x8r_\x8i_\x8e_\x8s·instead. |
| 561 | ········DEFAULT_ACCEPTORS·=\x8=·{\x8{'\x8'C\x8CH\x8HA\x8AR\x8RM\x8MM\x8M2\x827\x87'\x8':\x8:·(\x8('\x8'O.OH.H2.2'.',.,·'.'O.OC.C2.2'.',.,·'.'O.OG.G'.',.,·'.'O.OC.C1.1'.',.,·'.'O.OE\x8E2\x82'\x8',\x8, | 561 | ········DEFAULT_ACCEPTORS·=\x8=·{\x8{'\x8'C\x8CH\x8HA\x8AR\x8RM\x8MM\x8M2\x827\x87'\x8':\x8:·(\x8('\x8'S.SG.G'.',.,·'.'O.OE.E2.2'.',.,·'.'O.OD.D2.2'.',.,·'.'O.OC.C1.1'.',.,·'.'N.NE\x8E2\x82'\x8',\x8, |
| 562 | ········'\x8'O\x8OH.H'.',.,·'.'O.OG.G1.1'.',.,·'.'N.NE.E2.2'.',.,·'.'O.OW.W'.',.,·'.'O.OD.D1.1'.',.,·'.'N.ND.D1.1'.',.,·'.'O.O'.',.,·'.'O.OE.E1.1'.',.,·'.'S.SD.D'.',.,·'.'O.OD.D2.2'.',.,·'.'S.SG.G'\x8')\x8),\x8, | 562 | ········'\x8'O\x8OG.G'.',.,·'.'O.O'.',.,·'.'O.OH.H'.',.,·'.'O.OG.G1.1'.',.,·'.'O.OD.D1.1'.',.,·'.'O.OE.E1.1'.',.,·'.'O.OH.H2.2'.',.,·'.'S.SD.D'.',.,·'.'O.OC.C2.2'.',.,·'.'O.OW.W'.',.,·'.'N.ND.D1.1'\x8')\x8),\x8, |
| 563 | ········'\x8'G\x8GL\x8LY\x8YC\x8CA\x8AM\x8M0\x806\x86'\x8':\x8:·(\x8('\x8'N.N'.',.,·'.'O.OW.W'.',.,·'.'O.OY.Y'.',.,·'.'O.O'.',.,·'.'O.OH.H'.',.,·'.'O.O2.2'.',.,·'.'S.SM.M'.',.,·'.'O.OS.S'\x8',\x8,·'\x8'N\x8NT\x8T'\x8')\x8),\x8, | 563 | ········'\x8'G\x8GL\x8LY\x8YC\x8CA\x8AM\x8M0\x806\x86'\x8':\x8:·(\x8('\x8'O.OS.S'.',.,·'.'S.SM.M'.',.,·'.'N.N'.',.,·'.'O.O'.',.,·'.'O.OY.Y'.',.,·'.'O.OH.H'.',.,·'.'O.O2.2'.',.,·'.'O.OW.W'\x8',\x8,·'\x8'N\x8NT\x8T'\x8')\x8),\x8, |
| 564 | ········'\x8'o\x8ot\x8th\x8he\x8er\x8r'\x8':\x8:·(\x8()\x8)}\x8}_\x8¶ | 564 | ········'\x8'o\x8ot\x8th\x8he\x8er\x8r'\x8':\x8:·(\x8()\x8)}\x8}_\x8¶ |
| 565 | ············default·atom·names·that·are·treated·as·hydrogen·a\x8ac\x8cc\x8ce\x8ep\x8pt\x8to\x8or\x8rs\x8s·(see | 565 | ············default·atom·names·that·are·treated·as·hydrogen·a\x8ac\x8cc\x8ce\x8ep\x8pt\x8to\x8or\x8rs\x8s·(see |
| 566 | ············_\x8D_\x8e_\x8f_\x8a_\x8u_\x8l_\x8t_\x8·_\x8h_\x8e_\x8a_\x8v_\x8y_\x8·_\x8a_\x8t_\x8o_\x8m_\x8·_\x8n_\x8a_\x8m_\x8e_\x8s_\x8·_\x8f_\x8o_\x8r_\x8·_\x8C_\x8H_\x8A_\x8R_\x8M_\x8M_\x82_\x87_\x8·_\x8f_\x8o_\x8r_\x8c_\x8e_\x8·_\x8f_\x8i_\x8e_\x8l_\x8d_\x8.);·use·the | 566 | ············_\x8D_\x8e_\x8f_\x8a_\x8u_\x8l_\x8t_\x8·_\x8h_\x8e_\x8a_\x8v_\x8y_\x8·_\x8a_\x8t_\x8o_\x8m_\x8·_\x8n_\x8a_\x8m_\x8e_\x8s_\x8·_\x8f_\x8o_\x8r_\x8·_\x8C_\x8H_\x8A_\x8R_\x8M_\x8M_\x82_\x87_\x8·_\x8f_\x8o_\x8r_\x8c_\x8e_\x8·_\x8f_\x8i_\x8e_\x8l_\x8d_\x8.);·use·the |
| 567 | ············keywordacceptorsto·add·a·list·of·additional·acceptor·names. | 567 | ············keywordacceptorsto·add·a·list·of·additional·acceptor·names. |
| 568 | ········DEFAULT_DONORS·=\x8=·{\x8{'\x8'C\x8CH\x8HA\x8AR\x8RM\x8MM\x8M2\x827\x87'\x8':\x8:·(\x8('\x8'O.OH.H2.2'.',.,·'.'N.NE.E2.2'.',.,·'.'N.N'.',.,·'.'N.NE.E1.1'.',.,·'.'O.OG.G'.',.,·'.'O.OW.W'\x8',\x8, | 568 | ········DEFAULT_DONORS·=\x8=·{\x8{'\x8'C\x8CH\x8HA\x8AR\x8RM\x8MM\x8M2\x827\x87'\x8':\x8:·(\x8('\x8'N.NH.H2.2'.',.,·'.'S.SG.G'.',.,·'.'N.NH.H1.1'.',.,·'.'N.N'.',.,·'.'N.NE.E1.1'.',.,·'.'N.NE.E2.2'\x8',\x8, |
| 569 | ········'\x8'N.ND.D1.1'.',.,·'.'N.NH.H2.2'.',.,·'.'N.ND.D2.2'.',.,·'.'N.NZ.Z'.',.,·'.'O.OH.H'.',.,·'.'N.NE.E'.',.,·'.'O.OG.G1.1'.',.,·'.'N.NH.H1.1'.',.,·'.'S.SG.G'\x8')\x8),\x8,·'\x8'G\x8GL\x8LY\x8YC\x8CA\x8AM\x8M0\x806\x86'\x8':\x8: | 569 | ········'\x8'O.OG.G'.',.,·'.'N.NE.E'.',.,·'.'O.OH.H2.2'.',.,·'.'N.ND.D2.2'.',.,·'.'O.OH.H'.',.,·'.'O.OG.G1.1'.',.,·'.'N.NZ.Z'.',.,·'.'O.OW.W'.',.,·'.'N.ND.D1.1'\x8')\x8),\x8,·'\x8'G\x8GL\x8LY\x8YC\x8CA\x8AM\x8M0\x806\x86'\x8':\x8: |
| 570 | ········(\x8('\x8'O\x8OH\x8H'\x8',\x8,·'\x8'N\x8N'.',.,·'.'O.OW.W'.',.,·'.'N.NT.T'.',.,·'.'N.N3.3'\x8')\x8),\x8,·'\x8'o\x8ot\x8th\x8he\x8er\x8r'\x8':\x8:·(\x8()\x8)}\x8}_\x8¶ | 570 | ········(\x8('\x8'O\x8OH\x8H'\x8',\x8,·'\x8'N\x8N3.3'.',.,·'.'N.N'.',.,·'.'O.OW.W'.',.,·'.'N.NT.T'\x8')\x8),\x8,·'\x8'o\x8ot\x8th\x8he\x8er\x8r'\x8':\x8:·(\x8()\x8)}\x8}_\x8¶ |
| 571 | ············default·heavy·atom·names·whose·hydrogens·are·treated·as·d\x8do\x8on\x8no\x8or\x8rs\x8s·(see | 571 | ············default·heavy·atom·names·whose·hydrogens·are·treated·as·d\x8do\x8on\x8no\x8or\x8rs\x8s·(see |
| 572 | ············_\x8D_\x8e_\x8f_\x8a_\x8u_\x8l_\x8t_\x8·_\x8h_\x8e_\x8a_\x8v_\x8y_\x8·_\x8a_\x8t_\x8o_\x8m_\x8·_\x8n_\x8a_\x8m_\x8e_\x8s_\x8·_\x8f_\x8o_\x8r_\x8·_\x8C_\x8H_\x8A_\x8R_\x8M_\x8M_\x82_\x87_\x8·_\x8f_\x8o_\x8r_\x8c_\x8e_\x8·_\x8f_\x8i_\x8e_\x8l_\x8d_\x8.);·use·the | 572 | ············_\x8D_\x8e_\x8f_\x8a_\x8u_\x8l_\x8t_\x8·_\x8h_\x8e_\x8a_\x8v_\x8y_\x8·_\x8a_\x8t_\x8o_\x8m_\x8·_\x8n_\x8a_\x8m_\x8e_\x8s_\x8·_\x8f_\x8o_\x8r_\x8·_\x8C_\x8H_\x8A_\x8R_\x8M_\x8M_\x82_\x87_\x8·_\x8f_\x8o_\x8r_\x8c_\x8e_\x8·_\x8f_\x8i_\x8e_\x8l_\x8d_\x8.);·use·the |
| 573 | ············keyworddonorsto·add·a·list·of·additional·donor·names. | 573 | ············keyworddonorsto·add·a·list·of·additional·donor·names. |
| 574 | ········count_by_time(a\x8an\x8na\x8al\x8ly\x8ys\x8si\x8is\x8s_\x8_f\x8fu\x8un\x8nc\x8c=\x8=N\x8No\x8on\x8ne\x8e,·*\x8**\x8*k\x8kw\x8wa\x8ar\x8rg\x8gs\x8s)_\x8[_\x8s_\x8o_\x8u_\x8r_\x8c_\x8e_\x8]_\x8¶ | 574 | ········count_by_time(a\x8an\x8na\x8al\x8ly\x8ys\x8si\x8is\x8s_\x8_f\x8fu\x8un\x8nc\x8c=\x8=N\x8No\x8on\x8ne\x8e,·*\x8**\x8*k\x8kw\x8wa\x8ar\x8rg\x8gs\x8s)_\x8[_\x8s_\x8o_\x8u_\x8r_\x8c_\x8e_\x8]_\x8¶ |
| 575 | ············Counts·the·number·of·water·bridges·per·timestep. | 575 | ············Counts·the·number·of·water·bridges·per·timestep. |
| 576 | ············The·counting·behaviour·can·be·adjusted·by·supplying·analysis_func. | 576 | ············The·counting·behaviour·can·be·adjusted·by·supplying·analysis_func. |
| 577 | ············See·_\x8U_\x8s_\x8e_\x8·_\x8c_\x8o_\x8u_\x8n_\x8t_\x8__\x8b_\x8y_\x8__\x8t_\x8i_\x8m_\x8e·for·details. | 577 | ············See·_\x8U_\x8s_\x8e_\x8·_\x8c_\x8o_\x8u_\x8n_\x8t_\x8__\x8b_\x8y_\x8__\x8t_\x8i_\x8m_\x8e·for·details. |