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1 -rw-r--r--···0········0········0········4·2024-11-01·03:23:53.000000·debian-binary1 -rw-r--r--···0········0········0········4·2024-11-01·03:23:53.000000·debian-binary
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1 Package:·gromacs-data1 Package:·gromacs-data
2 Source:·gromacs2 Source:·gromacs
3 Version:·2024.4-13 Version:·2024.4-1
4 Architecture:·all4 Architecture:·all
5 Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org>5 Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org>
6 Installed-Size:·3004466 Installed-Size:·300453
7 Depends:·libjs-mathjax7 Depends:·libjs-mathjax
8 Recommends:·gromacs8 Recommends:·gromacs
9 Section:·science9 Section:·science
10 Priority:·optional10 Priority:·optional
11 Multi-Arch:·foreign11 Multi-Arch:·foreign
12 Homepage:·https://www.gromacs.org/12 Homepage:·https://www.gromacs.org/
13 Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation13 Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation
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74 </div><!--·top·-->74 </div><!--·top·-->
75 <div><div·class="header">75 <div><div·class="header">
76 ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div>76 ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div>
77 </div><!--header-->77 </div><!--header-->
78 <div·class="contents">78 <div·class="contents">
79 <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p>79 <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p>
80 <div·class="dotgraph">80 <div·class="dotgraph">
81 <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="3310"·height="1630"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>81 <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="3612"·height="1663"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
82 ·<h1><a·class="anchor"·id="autotoc_md49"></a>82 ·<h1><a·class="anchor"·id="autotoc_md49"></a>
83 Legend</h1>83 Legend</h1>
84 <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p>84 <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p>
85 <div·class="dotgraph">85 <div·class="dotgraph">
86 <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>86 <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
87 <p>Node·colors:·</p><dl>87 <p>Node·colors:·</p><dl>
88 <dt>gray·background·</dt>88 <dt>gray·background·</dt>
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150 ····['manager_2eh_109',·['manager.h',·['../manager_8h.xhtml',·1,·'']]],150 ····['manager_2eh_109',·['manager.h',·['../manager_8h.xhtml',·1,·'']]],
151 ····['managers_5f_110',·['managers_',·['../classgmx_1_1internal_1_1OptionsImpl.xhtml#ac6b12c0ab7bd35f3223562488836479f',·1,·'gmx::internal::OptionsImpl::managers_'], 
152 ········['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#a83daffc3bbc78602b537d5968aa89fb2',·1,·'gmx::internal::OptionSectionImpl::managers_']151 ····['managers_5f_110',·['managers_',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#a83daffc3bbc78602b537d5968aa89fb2',·1,·'gmx::internal::OptionSectionImpl::managers_'],
 152 ········['../classgmx_1_1internal_1_1OptionsImpl.xhtml#ac6b12c0ab7bd35f3223562488836479f',·1,·'gmx::internal::OptionsImpl::managers_']
153 ····]],153 ····]],
154 ····['managesyncwithppcoordinatesendergpu_111',·['manageSyncWithPpCoordinateSenderGpu',·['../pme__gpu__internal_8cpp.xhtml#accf882be0b30fca6ededabd9470cfbc7',·1,·'pme_gpu_internal.cpp']]],154 ····['managesyncwithppcoordinatesendergpu_111',·['manageSyncWithPpCoordinateSenderGpu',·['../pme__gpu__internal_8cpp.xhtml#accf882be0b30fca6ededabd9470cfbc7',·1,·'pme_gpu_internal.cpp']]],
155 ····['manualoutputfile_112',·['ManualOutputFile',·['../structgmx_1_1test_1_1anonymous__namespace_02extract__cluster_8cpp_03_1_1ManualOutputFile.xhtml',·1,·'gmx::test::anonymous_namespace{extract_cluster.cpp}']]],155 ····['manualoutputfile_112',·['ManualOutputFile',·['../structgmx_1_1test_1_1anonymous__namespace_02extract__cluster_8cpp_03_1_1ManualOutputFile.xhtml',·1,·'gmx::test::anonymous_namespace{extract_cluster.cpp}']]],
156 ····['many_5fauto_5fcorrel_113',·['many_auto_correl',·['../manyautocorrelation_8h.xhtml#ad3b9966ff6279f6316c3c898e31f0dee',·1,·'many_auto_correl(std::vector&lt;·std::vector&lt;·real·&gt;·&gt;·*c):&#160;manyautocorrelation.cpp'],156 ····['many_5fauto_5fcorrel_113',·['many_auto_correl',·['../manyautocorrelation_8h.xhtml#ad3b9966ff6279f6316c3c898e31f0dee',·1,·'many_auto_correl(std::vector&lt;·std::vector&lt;·real·&gt;·&gt;·*c):&#160;manyautocorrelation.cpp'],
157 ········['../manyautocorrelation_8cpp.xhtml#ad3b9966ff6279f6316c3c898e31f0dee',·1,·'many_auto_correl(std::vector&lt;·std::vector&lt;·real·&gt;·&gt;·*c):&#160;manyautocorrelation.cpp']157 ········['../manyautocorrelation_8cpp.xhtml#ad3b9966ff6279f6316c3c898e31f0dee',·1,·'many_auto_correl(std::vector&lt;·std::vector&lt;·real·&gt;·&gt;·*c):&#160;manyautocorrelation.cpp']
158 ····]],158 ····]],
159 ····['many_5fcross_5fcorr_114',·['many_cross_corr',·['../crosscorr_8cpp.xhtml#a953d512f8171310c10a4d0f4121d1a33',·1,·'many_cross_corr(int·nFunc,·int·*nData,·real·**f,·real·**g,·real·**corr):&#160;crosscorr.cpp'],159 ····['many_5fcross_5fcorr_114',·['many_cross_corr',·['../crosscorr_8cpp.xhtml#a953d512f8171310c10a4d0f4121d1a33',·1,·'many_cross_corr(int·nFunc,·int·*nData,·real·**f,·real·**g,·real·**corr):&#160;crosscorr.cpp'],
Offset 167, 20 lines modifiedOffset 167, 20 lines modified
167 ····['mapb_118',·['mapb',·['../structgmx__ana__indexmap__t.xhtml#aabf74268915bc1a13aaaa95c236d5e08',·1,·'gmx_ana_indexmap_t']]],167 ····['mapb_118',·['mapb',·['../structgmx__ana__indexmap__t.xhtml#aabf74268915bc1a13aaaa95c236d5e08',·1,·'gmx_ana_indexmap_t']]],
168 ····['mapconstiterator_119',·['MapConstIterator',·['../classgmx_1_1EnergyFrame.xhtml#a5b3ca67a8497cc2cf77f3c0da771fa95',·1,·'gmx::EnergyFrame']]],168 ····['mapconstiterator_119',·['MapConstIterator',·['../classgmx_1_1EnergyFrame.xhtml#a5b3ca67a8497cc2cf77f3c0da771fa95',·1,·'gmx::EnergyFrame']]],
169 ····['mapgridtodatagrid_120',·['mapGridToDataGrid',·['../namespacegmx.xhtml#ad49aba237e75034450c40885fccde22c',·1,·'gmx']]],169 ····['mapgridtodatagrid_120',·['mapGridToDataGrid',·['../namespacegmx.xhtml#ad49aba237e75034450c40885fccde22c',·1,·'gmx']]],
170 ····['mapid_121',·['mapid',·['../structgmx__ana__indexmap__t.xhtml#a2675a18d204f864f94da0d616c115884',·1,·'gmx_ana_indexmap_t']]],170 ····['mapid_121',·['mapid',·['../structgmx__ana__indexmap__t.xhtml#a2675a18d204f864f94da0d616c115884',·1,·'gmx_ana_indexmap_t']]],
171 ····['mappedid_122',·['mappedId',·['../classgmx_1_1SelectionPosition.xhtml#a9b2a183cd94c03a9aabe10c89e73648b',·1,·'gmx::SelectionPosition']]],171 ····['mappedid_122',·['mappedId',·['../classgmx_1_1SelectionPosition.xhtml#a9b2a183cd94c03a9aabe10c89e73648b',·1,·'gmx::SelectionPosition']]],
172 ····['mappedids_123',·['mappedIds',·['../classgmx_1_1Selection.xhtml#a44d2c2cd4db4eade34cac95f5916a2a0',·1,·'gmx::Selection']]],172 ····['mappedids_123',·['mappedIds',·['../classgmx_1_1Selection.xhtml#a44d2c2cd4db4eade34cac95f5916a2a0',·1,·'gmx::Selection']]],
173 ····['mappedunionfinder_124',·['MappedUnionFinder',·['../classgmx_1_1MappedUnionFinder.xhtml',·1,·'gmx']]],173 ····['mappedunionfinder_124',·['MappedUnionFinder',·['../classgmx_1_1MappedUnionFinder.xhtml',·1,·'gmx']]],
 174 ····['mapping_125',·['mapping',·['../classgmx_1_1layout__right_1_1mapping.xhtml',·1,·'gmx::layout_right::mapping&lt;·Extents·&gt;'],
174 ····['mapping_125',·['mapping',·['../classgmx_1_1layout__right_1_1mapping.xhtml#ad632683c77288c28df614ea7915917ce',·1,·'gmx::layout_right::mapping::mapping(const·mapping·&amp;)·noexcept=default'],175 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#ad632683c77288c28df614ea7915917ce',·1,·'gmx::layout_right::mapping::mapping()'],
 176 ········['../classgmx_1_1basic__mdspan.xhtml#a02c710cacde0166f1c5f4c67b9971cee',·1,·'gmx::basic_mdspan::mapping()'],
175 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#a7aa3312a770a6a3946d60a7e23cb2002',·1,·'gmx::layout_right::mapping::mapping(const·Extents·&amp;ext)·noexcept'],177 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#a7aa3312a770a6a3946d60a7e23cb2002',·1,·'gmx::layout_right::mapping::mapping(const·Extents·&amp;ext)·noexcept'],
176 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#a80905ecdaf35273d7f7c303e7d2ff909',·1,·'gmx::layout_right::mapping::mapping()·noexcept=default'], 
177 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#afc7b2299be673f6d37d0a570e061da72',·1,·'gmx::layout_right::mapping::mapping(mapping·&amp;&amp;)·noexcept=default'],178 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#afc7b2299be673f6d37d0a570e061da72',·1,·'gmx::layout_right::mapping::mapping(mapping·&amp;&amp;)·noexcept=default'],
 179 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#a80905ecdaf35273d7f7c303e7d2ff909',·1,·'gmx::layout_right::mapping::mapping()·noexcept=default']
178 ········['../classgmx_1_1basic__mdspan.xhtml#a02c710cacde0166f1c5f4c67b9971cee',·1,·'gmx::basic_mdspan::mapping()'], 
179 ········['../classgmx_1_1layout__right_1_1mapping.xhtml',·1,·'gmx::layout_right::mapping&lt;·Extents·&gt;'] 
180 ····]],180 ····]],
181 ····['mapping_5ftype_126',·['mapping_type',·['../classgmx_1_1basic__mdspan.xhtml#a41c0126e07c9b922b4b838b578af7888',·1,·'gmx::basic_mdspan']]],181 ····['mapping_5ftype_126',·['mapping_type',·['../classgmx_1_1basic__mdspan.xhtml#a41c0126e07c9b922b4b838b578af7888',·1,·'gmx::basic_mdspan']]],
182 ····['maptoframeatoms_5f_127',·['mapToFrameAtoms_',·['../classgmx_1_1PositionCalculationCollection_1_1Impl.xhtml#a028b638ac6bf4c5c76f4c78819d94cff',·1,·'gmx::PositionCalculationCollection::Impl']]],182 ····['maptoframeatoms_5f_127',·['mapToFrameAtoms_',·['../classgmx_1_1PositionCalculationCollection_1_1Impl.xhtml#a028b638ac6bf4c5c76f4c78819d94cff',·1,·'gmx::PositionCalculationCollection::Impl']]],
183 ····['maptype_128',·['MapType',·['../classgmx_1_1EnergyFrame.xhtml#ae7cbc6aabfeacd2447563d8f137045f4',·1,·'gmx::EnergyFrame']]],183 ····['maptype_128',·['MapType',·['../classgmx_1_1EnergyFrame.xhtml#ae7cbc6aabfeacd2447563d8f137045f4',·1,·'gmx::EnergyFrame']]],
184 ····['mark_5fsubexpr_5fdynamic_129',·['mark_subexpr_dynamic',·['../compiler_8cpp.xhtml#a2ce676e6caff3877910cd9cfc27cb955',·1,·'compiler.cpp']]],184 ····['mark_5fsubexpr_5fdynamic_129',·['mark_subexpr_dynamic',·['../compiler_8cpp.xhtml#a2ce676e6caff3877910cd9cfc27cb955',·1,·'compiler.cpp']]],
185 ····['mark_5fsurface_5fcovered_130',·['mark_surface_covered',·['../sm__insolidangle_8cpp.xhtml#ad016ba6ae3e4a77948222f08f4004e4f',·1,·'sm_insolidangle.cpp']]],185 ····['mark_5fsurface_5fcovered_130',·['mark_surface_covered',·['../sm__insolidangle_8cpp.xhtml#ad016ba6ae3e4a77948222f08f4004e4f',·1,·'sm_insolidangle.cpp']]],
186 ····['markasreadytoreduce_131',·['markAsReadyToReduce',·['../classgmx_1_1ObservablesReducer.xhtml#aa76fb912aca1c30275e567685626f515',·1,·'gmx::ObservablesReducer']]],186 ····['markasreadytoreduce_131',·['markAsReadyToReduce',·['../classgmx_1_1ObservablesReducer.xhtml#aa76fb912aca1c30275e567685626f515',·1,·'gmx::ObservablesReducer']]],
Offset 191, 51 lines modifiedOffset 191, 51 lines modified
191 ····]],191 ····]],
192 ····['mask_135',·['mask',·['../classgmx_1_1test_1_1AllocatorTest.xhtml#a3b860b1af26fe4dce4d932a100a1d1ab',·1,·'gmx::test::AllocatorTest']]],192 ····['mask_135',·['mask',·['../classgmx_1_1test_1_1AllocatorTest.xhtml#a3b860b1af26fe4dce4d932a100a1d1ab',·1,·'gmx::test::AllocatorTest']]],
193 ····['maskadd_136',·['maskadd',·['../namespacegmx.xhtml#a68b090d0e3ab5695c508453406ee43c8',·1,·'gmx::maskAdd(double·a,·double·b,·double·m)'],193 ····['maskadd_136',·['maskadd',·['../namespacegmx.xhtml#a68b090d0e3ab5695c508453406ee43c8',·1,·'gmx::maskAdd(double·a,·double·b,·double·m)'],
194 ········['../namespacegmx.xhtml#a0178a127dde331652ab015323ae622f2',·1,·'gmx::maskAdd(float·a,·float·b,·float·m)'],194 ········['../namespacegmx.xhtml#a0178a127dde331652ab015323ae622f2',·1,·'gmx::maskAdd(float·a,·float·b,·float·m)'],
195 ········['../group__module__simd.xhtml#ga766a313a4a158cfcb0eed0373dd82dfc',·1,·'gmx::maskAdd(SimdFloat·a,·SimdFloat·b,·SimdFBool·m)'],195 ········['../group__module__simd.xhtml#ga766a313a4a158cfcb0eed0373dd82dfc',·1,·'gmx::maskAdd(SimdFloat·a,·SimdFloat·b,·SimdFBool·m)'],
196 ········['../group__module__simd.xhtml#gadab86e04bd62248ab68039d8983a9206',·1,·'gmx::maskAdd(SimdDouble·a,·SimdDouble·b,·SimdDBool·m)']196 ········['../group__module__simd.xhtml#gadab86e04bd62248ab68039d8983a9206',·1,·'gmx::maskAdd(SimdDouble·a,·SimdDouble·b,·SimdDBool·m)']
197 ····]],197 ····]],
 198 ····['maskarray_137',·['maskarray',·['../classgmx_1_1DiagonalMasker_3_01nR_00_01kernelLayout_00_01KernelLayoutClusterRatio_1_1JSizeIsHalfISize_01_4.xhtml#aa09948a382ac9009e878a3bf5081abd5',·1,·'gmx::DiagonalMasker&lt;·nR,·kernelLayout,·KernelLayoutClusterRatio::JSizeIsHalfISize·&gt;::maskArray()'],
198 ····['maskarray_137',·['maskarray',·['../classgmx_1_1DiagonalMasker_3_01nR_00_01kernelLayout_00_01KernelLayoutClusterRatio_1_1JSizeEqualsISize_01_4.xhtml#a42fcf1ef011c98c6dca2d5fb14a4ff53',·1,·'gmx::DiagonalMasker&lt;·nR,·kernelLayout,·KernelLayoutClusterRatio::JSizeEqualsISize·&gt;::maskArray()'],199 ········['../classgmx_1_1DiagonalMasker_3_01nR_00_01kernelLayout_00_01KernelLayoutClusterRatio_1_1JSizeEqualsISize_01_4.xhtml#a42fcf1ef011c98c6dca2d5fb14a4ff53',·1,·'gmx::DiagonalMasker&lt;·nR,·kernelLayout,·KernelLayoutClusterRatio::JSizeEqualsISize·&gt;::maskArray()'],
199 ········['../classgmx_1_1DiagonalMasker_3_01nR_00_01kernelLayout_00_01KernelLayoutClusterRatio_1_1JSizeIsDoubleISize_01_4.xhtml#a45e2188c94bad5c65ddfbf1802dd7a81',·1,·'gmx::DiagonalMasker&lt;·nR,·kernelLayout,·KernelLayoutClusterRatio::JSizeIsDoubleISize·&gt;::maskArray()'],200 ········['../classgmx_1_1DiagonalMasker_3_01nR_00_01kernelLayout_00_01KernelLayoutClusterRatio_1_1JSizeIsDoubleISize_01_4.xhtml#a45e2188c94bad5c65ddfbf1802dd7a81',·1,·'gmx::DiagonalMasker&lt;·nR,·kernelLayout,·KernelLayoutClusterRatio::JSizeIsDoubleISize·&gt;::maskArray()']
200 ········['../classgmx_1_1DiagonalMasker_3_01nR_00_01kernelLayout_00_01KernelLayoutClusterRatio_1_1JSizeIsHalfISize_01_4.xhtml#aa09948a382ac9009e878a3bf5081abd5',·1,·'gmx::DiagonalMasker&lt;·nR,·kernelLayout,·KernelLayoutClusterRatio::JSizeIsHalfISize·&gt;::maskArray()'] 
201 ····]],201 ····]],
202 ····['maskzfma_138',·['maskzfma',·['../group__module__simd.xhtml#gaaa689a6c17b1d60d62b6fcd51daa7639',·1,·'gmx::maskzFma(SimdDouble·a,·SimdDouble·b,·SimdDouble·c,·SimdDBool·m)'],202 ····['maskzfma_138',·['maskzfma',·['../group__module__simd.xhtml#gaaa689a6c17b1d60d62b6fcd51daa7639',·1,·'gmx::maskzFma(SimdDouble·a,·SimdDouble·b,·SimdDouble·c,·SimdDBool·m)'],
203 ········['../namespacegmx.xhtml#aa3cf4eaad108887d2462f5beecd4db62',·1,·'gmx::maskzFma(double·a,·double·b,·double·c,·double·m)'], 
204 ········['../group__module__simd.xhtml#gac21c886b9883657fd67d8b48e784af2d',·1,·'gmx::maskzFma(SimdFloat·a,·SimdFloat·b,·SimdFloat·c,·SimdFBool·m)'],203 ········['../group__module__simd.xhtml#gac21c886b9883657fd67d8b48e784af2d',·1,·'gmx::maskzFma(SimdFloat·a,·SimdFloat·b,·SimdFloat·c,·SimdFBool·m)'],
205 ········['../namespacegmx.xhtml#a8151e61ef06e30e360c03bba6fb5e2ab',·1,·'gmx::maskzFma(float·a,·float·b,·float·c,·float·m)']204 ········['../namespacegmx.xhtml#a8151e61ef06e30e360c03bba6fb5e2ab',·1,·'gmx::maskzFma(float·a,·float·b,·float·c,·float·m)'],
 205 ········['../namespacegmx.xhtml#aa3cf4eaad108887d2462f5beecd4db62',·1,·'gmx::maskzFma(double·a,·double·b,·double·c,·double·m)']
206 ····]],206 ····]],
207 ····['maskzinv_139',·['maskzinv',·['../namespacegmx.xhtml#a582d71ff8e7d51cbd2386e29935e89ef',·1,·'gmx::maskzInv(float·x,·bool·m)'],207 ····['maskzinv_139',·['maskzinv',·['../namespacegmx.xhtml#a582d71ff8e7d51cbd2386e29935e89ef',·1,·'gmx::maskzInv(float·x,·bool·m)'],
208 ········['../namespacegmx.xhtml#af5cc89f64ab845f88816a9cbb16d467c',·1,·'gmx::maskzInv(double·x,·bool·m)']208 ········['../namespacegmx.xhtml#af5cc89f64ab845f88816a9cbb16d467c',·1,·'gmx::maskzInv(double·x,·bool·m)']
209 ····]],209 ····]],
210 ····['maskzinvsingleaccuracy_140',·['maskzInvSingleAccuracy',·['../namespacegmx.xhtml#a2433c82892495a73bf41de15f5e8908f',·1,·'gmx']]],210 ····['maskzinvsingleaccuracy_140',·['maskzInvSingleAccuracy',·['../namespacegmx.xhtml#a2433c82892495a73bf41de15f5e8908f',·1,·'gmx']]],
211 ····['maskzinvsqrt_141',·['maskzinvsqrt',·['../namespacegmx.xhtml#aa5b5a9766964a2b854f493fd783bb63d',·1,·'gmx::maskzInvsqrt(double·x,·bool·m)'],211 ····['maskzinvsqrt_141',·['maskzinvsqrt',·['../namespacegmx.xhtml#aa5b5a9766964a2b854f493fd783bb63d',·1,·'gmx::maskzInvsqrt(double·x,·bool·m)'],
212 ········['../namespacegmx.xhtml#aa182f9ceead92b3055e6ae5903994651',·1,·'gmx::maskzInvsqrt(float·x,·bool·m)']212 ········['../namespacegmx.xhtml#aa182f9ceead92b3055e6ae5903994651',·1,·'gmx::maskzInvsqrt(float·x,·bool·m)']
213 ····]],213 ····]],
214 ····['maskzinvsqrtsingleaccuracy_142',·['maskzInvsqrtSingleAccuracy',·['../namespacegmx.xhtml#a1fdaf91102db0bfbc6fd440524b15199',·1,·'gmx']]],214 ····['maskzinvsqrtsingleaccuracy_142',·['maskzInvsqrtSingleAccuracy',·['../namespacegmx.xhtml#a1fdaf91102db0bfbc6fd440524b15199',·1,·'gmx']]],
215 ····['maskzmul_143',·['maskzmul',·['../namespacegmx.xhtml#a7e4ab8b1ab046ff242d32ab93366bfde',·1,·'gmx::maskzMul(double·a,·double·b,·double·m)'],215 ····['maskzmul_143',·['maskzmul',·['../namespacegmx.xhtml#a7e4ab8b1ab046ff242d32ab93366bfde',·1,·'gmx::maskzMul(double·a,·double·b,·double·m)'],
216 ········['../namespacegmx.xhtml#a1e3c4084e25d298f95003df8e9aeffa1',·1,·'gmx::maskzMul(float·a,·float·b,·float·m)'],216 ········['../namespacegmx.xhtml#a1e3c4084e25d298f95003df8e9aeffa1',·1,·'gmx::maskzMul(float·a,·float·b,·float·m)'],
217 ········['../group__module__simd.xhtml#gaa732ce9ab59cca63f834923a8cb4c775',·1,·'gmx::maskzMul(SimdFloat·a,·SimdFloat·b,·SimdFBool·m)'],217 ········['../group__module__simd.xhtml#gaa732ce9ab59cca63f834923a8cb4c775',·1,·'gmx::maskzMul(SimdFloat·a,·SimdFloat·b,·SimdFBool·m)'],
218 ········['../group__module__simd.xhtml#gafb416d879be4463f38af9b670583fd65',·1,·'gmx::maskzMul(SimdDouble·a,·SimdDouble·b,·SimdDBool·m)']218 ········['../group__module__simd.xhtml#gafb416d879be4463f38af9b670583fd65',·1,·'gmx::maskzMul(SimdDouble·a,·SimdDouble·b,·SimdDBool·m)']
219 ····]],219 ····]],
220 ····['maskzrcp_144',·['maskzrcp',·['../namespacegmx.xhtml#a46aa2887b65705f41a4f99028391e06d',·1,·'gmx::maskzRcp(double·x,·double·m)'], 
221 ········['../namespacegmx.xhtml#a5e2078ca9735b86c8414dc80273c330f',·1,·'gmx::maskzRcp(float·x,·float·m)'],220 ····['maskzrcp_144',·['maskzrcp',·['../namespacegmx.xhtml#a5e2078ca9735b86c8414dc80273c330f',·1,·'gmx::maskzRcp(float·x,·float·m)'],
222 ········['../group__module__simd.xhtml#gabda785f716b1445f709fc7aa028c0589',·1,·'gmx::maskzRcp(SimdFloat·x,·SimdFBool·m)'], 
223 ········['../group__module__simd.xhtml#ga0f425368efd0895189b0e11d4b5d4ccc',·1,·'gmx::maskzRcp(SimdDouble·x,·SimdDBool·m)']221 ········['../group__module__simd.xhtml#ga0f425368efd0895189b0e11d4b5d4ccc',·1,·'gmx::maskzRcp(SimdDouble·x,·SimdDBool·m)'],
 222 ········['../namespacegmx.xhtml#a46aa2887b65705f41a4f99028391e06d',·1,·'gmx::maskzRcp(double·x,·double·m)'],
 223 ········['../group__module__simd.xhtml#gabda785f716b1445f709fc7aa028c0589',·1,·'gmx::maskzRcp(SimdFloat·x,·SimdFBool·m)']
224 ····]],224 ····]],
225 ····['maskzrsqrt_145',·['maskzrsqrt',·['../group__module__simd.xhtml#ga6eb1ba8851b08ceea1c160b6b255ee9b',·1,·'gmx::maskzRsqrt(SimdFloat·x,·SimdFBool·m)'], 
226 ········['../group__module__simd.xhtml#ga3bbc24d75706e7515afc2f2071f1a469',·1,·'gmx::maskzRsqrt(SimdDouble·x,·SimdDBool·m)']225 ····['maskzrsqrt_145',·['maskzrsqrt',·['../group__module__simd.xhtml#ga3bbc24d75706e7515afc2f2071f1a469',·1,·'gmx::maskzRsqrt(SimdDouble·x,·SimdDBool·m)'],
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227 ····]],227 ····]],
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229 ········['../classgmx_1_1SelectionPosition.xhtml#ad0d89cf9872c5209484b47af5a829169',·1,·'gmx::SelectionPosition::mass()'], 
230 ········['../structSystemMomentum.xhtml#a28f63449530903c6d45c9bb6051e545a',·1,·'SystemMomentum::mass'],230 ········['../structSystemMomentum.xhtml#a28f63449530903c6d45c9bb6051e545a',·1,·'SystemMomentum::mass'],
231 ········['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099faff2864d6f652ee0ac254814f1ae4f4a8',·1,·'gmx::Mass']231 ········['../classgmx_1_1SelectionPosition.xhtml#ad0d89cf9872c5209484b47af5a829169',·1,·'gmx::SelectionPosition::mass()']
232 ····]],232 ····]],
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233 ····['masses_147',·['masses',·['../structgmx_1_1SelectionTopologyProperties.xhtml#a2996520d03806582978001bd420e8787',·1,·'gmx::SelectionTopologyProperties::masses()'],234 ········['../structgmx_1_1SelectionTopologyProperties.xhtml#a2996520d03806582978001bd420e8787',·1,·'gmx::SelectionTopologyProperties::masses()']
234 ········['../classgmx_1_1Selection.xhtml#aca468745670b88b10b2adcce026ae259',·1,·'gmx::Selection::masses()'] 
235 ····]],235 ····]],
236 ····['match_148',·['match',·['../structBondedInteraction.xhtml#a7c2a0f65b8629737b28b2ec2891f0d00',·1,·'BondedInteraction::match'],236 ····['match_148',·['match',·['../structBondedInteraction.xhtml#a7c2a0f65b8629737b28b2ec2891f0d00',·1,·'BondedInteraction::match'],
237 ········['../classanonymous__namespace_02sm__keywords_8cpp_03_1_1StringKeywordMatchItem.xhtml#a6f1a3d7a7873a1846048563c1faac40d',·1,·'anonymous_namespace{sm_keywords.cpp}::StringKeywordMatchItem::match()']237 ········['../classanonymous__namespace_02sm__keywords_8cpp_03_1_1StringKeywordMatchItem.xhtml#a6f1a3d7a7873a1846048563c1faac40d',·1,·'anonymous_namespace{sm_keywords.cpp}::StringKeywordMatchItem::match()']
238 ····]],238 ····]],
239 ····['matchandexplain_149',·['matchandexplain',·['../classgmx_1_1test_1_1RVecMatcher.xhtml#a2ae2928ffa1a58e85a278ed34b7c906c',·1,·'gmx::test::RVecMatcher::MatchAndExplain()'],239 ····['matchandexplain_149',·['matchandexplain',·['../classgmx_1_1test_1_1RVecMatcher.xhtml#a2ae2928ffa1a58e85a278ed34b7c906c',·1,·'gmx::test::RVecMatcher::MatchAndExplain()'],
240 ········['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml#a10d67b5a0da6c21ae1e1df339000be52',·1,·'gmx::test::FloatTypeMatcher::MatchAndExplain()']240 ········['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml#a10d67b5a0da6c21ae1e1df339000be52',·1,·'gmx::test::FloatTypeMatcher::MatchAndExplain()']
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255 ····]],255 ····]],
256 ····['matrix3x3constspan_160',·['Matrix3x3ConstSpan',·['../namespacegmx.xhtml#a589179a4042893247bfe78e630ee381f',·1,·'gmx']]],256 ····['matrix3x3constspan_160',·['Matrix3x3ConstSpan',·['../namespacegmx.xhtml#a589179a4042893247bfe78e630ee381f',·1,·'gmx']]],
257 ····['matrix3x3span_161',·['Matrix3x3Span',·['../namespacegmx.xhtml#a42b7945e249b8dd5a00cd733e679c2a9',·1,·'gmx']]],257 ····['matrix3x3span_161',·['Matrix3x3Span',·['../namespacegmx.xhtml#a42b7945e249b8dd5a00cd733e679c2a9',·1,·'gmx']]],
258 ····['matrix_5f_162',·['matrix_',·['../structgmx_1_1MrcDensitySkewData.xhtml#a8be1bb72413e6a66562f7fa3d2624d3f',·1,·'gmx::MrcDensitySkewData']]],258 ····['matrix_5f_162',·['matrix_',·['../structgmx_1_1MrcDensitySkewData.xhtml#a8be1bb72413e6a66562f7fa3d2624d3f',·1,·'gmx::MrcDensitySkewData']]],
259 ····['matrix_5fconvert_163',·['matrix_convert',·['../pbc_8cpp.xhtml#aec6c71950b4b9e1c90429eff68ea4168',·1,·'pbc.cpp']]],259 ····['matrix_5fconvert_163',·['matrix_convert',·['../pbc_8cpp.xhtml#aec6c71950b4b9e1c90429eff68ea4168',·1,·'pbc.cpp']]],
260 ····['matrixvectormultiply_164',·['matrixVectorMultiply',·['../namespacegmx.xhtml#a2f6cbfad1dad185c82ec9bee081833c5',·1,·'gmx']]],260 ····['matrixvectormultiply_164',·['matrixVectorMultiply',·['../namespacegmx.xhtml#a2f6cbfad1dad185c82ec9bee081833c5',·1,·'gmx']]],
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261 ····['max_165',·['max',·['../classgmx_1_1UniformRealDistribution.xhtml#abf888030231e57e8c412cecd63f70f78',·1,·'gmx::UniformRealDistribution::max()'], 
262 ········['../group__module__simd.xhtml#ga4edeef3c458f5c77cf3ceb80532a57ff',·1,·'gmx::max(SimdFloat·a,·SimdFloat·b)'], 
263 ········['../namespacegmx.xhtml#a35c7b010fbd32f5424afa0de0c70db6f',·1,·'gmx::max(float·a,·float·b)'], 
264 ········['../namespacegmx.xhtml#a16f6bf4a20b14262f28168596d5bb8b9',·1,·'gmx::max(double·a,·double·b)'], 
265 ········['../classgmx_1_1UniformIntDistribution.xhtml#af3bf0caf1c448e8f298a0d2b60b34733',·1,·'gmx::UniformIntDistribution::max()'],262 ········['../classgmx_1_1UniformIntDistribution.xhtml#af3bf0caf1c448e8f298a0d2b60b34733',·1,·'gmx::UniformIntDistribution::max()'],
266 ········['../classgmx_1_1ThreeFry2x64General.xhtml#a747866a072cff89a20b8f58621ae4bc5',·1,·'gmx::ThreeFry2x64General::max()'],263 ········['../classgmx_1_1ThreeFry2x64General.xhtml#a747866a072cff89a20b8f58621ae4bc5',·1,·'gmx::ThreeFry2x64General::max()'],
267 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#a445e2fab20c2f008fd972f5e96cd8b68',·1,·'gmx::TabulatedNormalDistribution::max()'],264 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#a445e2fab20c2f008fd972f5e96cd8b68',·1,·'gmx::TabulatedNormalDistribution::max()'],
268 ········['../classgmx_1_1NormalDistribution.xhtml#aba294339d0eec4d12a1019d24848f0b9',·1,·'gmx::NormalDistribution::max()'],265 ········['../classgmx_1_1NormalDistribution.xhtml#aba294339d0eec4d12a1019d24848f0b9',·1,·'gmx::NormalDistribution::max()'],
269 ········['../classgmx_1_1GammaDistribution.xhtml#af043df37641bf3c31adc4b46164ef94c',·1,·'gmx::GammaDistribution::max()'],266 ········['../classgmx_1_1GammaDistribution.xhtml#af043df37641bf3c31adc4b46164ef94c',·1,·'gmx::GammaDistribution::max()'],
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270 ········['../group__module__simd.xhtml#gaceb279f0a831efc0d8e6be7d96c9e6d2',·1,·'gmx::max(SimdDouble·a,·SimdDouble·b)'], 
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272 ········['../group__module__simd.xhtml#ga68bbfb58d0ab7d2362d0efde15c14ca3',·1,·'gmx::max(Simd4Double·a,·Simd4Double·b)'], 
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274 ········['../classgmx_1_1ExponentialDistribution.xhtml#a5db77b73c9d84977cd6a1e93427abb6b',·1,·'gmx::ExponentialDistribution::max()']269 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf888030231e57e8c412cecd63f70f78',·1,·'gmx::UniformRealDistribution::max()'],
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462 ········['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0ca6adf97f83acf6453d4a6a4b1070f3754',·1,·'gmx::None'],462 ········['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0ca6adf97f83acf6453d4a6a4b1070f3754',·1,·'gmx::None'],
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466 ····['nonfunctional_287',·['NonFunctional',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888a836c1376187303303ffb10b26f2a4422',·1,·'device_information.h']]],466 ····['nonfunctional_287',·['NonFunctional',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888a836c1376187303303ffb10b26f2a4422',·1,·'device_information.h']]],
467 ····['nonlinear_288',·['nonlinear',·['../namespacegmx.xhtml#a63cf11bdf7c50436e7a754d50689f362a47e3d35ab4249db25f1467971d8aba21',·1,·'gmx::NonLinear'], 
468 ········['../classgmx_1_1VirtualSitesHandler.xhtml#a9bc9f8f9c0f9558d09bf4b5ed0273e3ba47e3d35ab4249db25f1467971d8aba21',·1,·'gmx::VirtualSitesHandler::NonLinear']467 ····['nonlinear_288',·['nonlinear',·['../classgmx_1_1VirtualSitesHandler.xhtml#a9bc9f8f9c0f9558d09bf4b5ed0273e3ba47e3d35ab4249db25f1467971d8aba21',·1,·'gmx::VirtualSitesHandler::NonLinear'],
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475 ····['nopbcjumps_292',·['NoPBCJumps',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a3c9450d09d1b92477398f1a26bbb11bf',·1,·'gmx']]],475 ····['nopbcjumps_292',·['NoPBCJumps',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a3c9450d09d1b92477398f1a26bbb11bf',·1,·'gmx']]],
476 ····['norder_293',·['nOrder',·['../classgmx_1_1Lincs.xhtml#a916d6e0a08223001ef38a5b74043ab38',·1,·'gmx::Lincs']]],476 ····['norder_293',·['nOrder',·['../classgmx_1_1Lincs.xhtml#a916d6e0a08223001ef38a5b74043ab38',·1,·'gmx::Lincs']]],
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479 ········['../namespacegmx.xhtml#abfc89b990a48f86125d9437b6050be46',·1,·'gmx::norm(T·*v)']479 ········['../namespacegmx.xhtml#abfc89b990a48f86125d9437b6050be46',·1,·'gmx::norm(T·*v)']
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482 ········['../classgmx_1_1BasicVector.xhtml#aac10162bd5e4aeae070a245d55404164',·1,·'gmx::BasicVector::norm2()']482 ········['../classgmx_1_1BasicVector.xhtml#aac10162bd5e4aeae070a245d55404164',·1,·'gmx::BasicVector::norm2()']
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485 ····['normal_297',·['Normal',·['../device__stream_8h.xhtml#a745c3a25d092600ae45b68d7e73d8319a960b44c579bc2f6818d2daaf9e4c16f0',·1,·'device_stream.h']]],485 ····['normal_297',·['Normal',·['../device__stream_8h.xhtml#a745c3a25d092600ae45b68d7e73d8319a960b44c579bc2f6818d2daaf9e4c16f0',·1,·'device_stream.h']]],
486 ····['normaldistribution_298',·['normaldistribution',·['../classgmx_1_1NormalDistribution.xhtml#a96caccdbb3d6390fcb152f6f6a38a2e1',·1,·'gmx::NormalDistribution::NormalDistribution(result_type·mean=0.0,·result_type·stddev=1.0)'],486 ····['normaldistribution_298',·['normaldistribution',·['../structUmbrellaOptions.xhtml#a473f1363f6af80b169a66c49e0806794',·1,·'UmbrellaOptions::normalDistribution'],
487 ········['../classgmx_1_1NormalDistribution.xhtml#a06215348b437434202cda73d44de8c99',·1,·'gmx::NormalDistribution::NormalDistribution(const·param_type·&amp;param)'],487 ········['../classgmx_1_1NormalDistribution.xhtml#a06215348b437434202cda73d44de8c99',·1,·'gmx::NormalDistribution::NormalDistribution()'],
488 ········['../classgmx_1_1NormalDistribution.xhtml',·1,·'gmx::NormalDistribution&lt;·RealType·&gt;'],488 ········['../classgmx_1_1NormalDistribution.xhtml',·1,·'gmx::NormalDistribution&lt;·RealType·&gt;'],
489 ········['../structUmbrellaOptions.xhtml#a473f1363f6af80b169a66c49e0806794',·1,·'UmbrellaOptions::normalDistribution']489 ········['../classgmx_1_1NormalDistribution.xhtml#a96caccdbb3d6390fcb152f6f6a38a2e1',·1,·'gmx::NormalDistribution::NormalDistribution()']
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495 ····]],495 ····]],
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498 ····['normalize_5facf_304',·['normalize_acf',·['../autocorr_8cpp.xhtml#a415d5aa1ec90e0366c9754df28f3e180',·1,·'autocorr.cpp']]],498 ····['normalize_5facf_304',·['normalize_acf',·['../autocorr_8cpp.xhtml#a415d5aa1ec90e0366c9754df28f3e180',·1,·'autocorr.cpp']]],
499 ····['normalizeblock_305',·['normalizeBlock',·['../namespacegmx.xhtml#a70bac9d01a06d35dc45d86a6bdba4f06',·1,·'gmx']]],499 ····['normalizeblock_305',·['normalizeBlock',·['../namespacegmx.xhtml#a70bac9d01a06d35dc45d86a6bdba4f06',·1,·'gmx']]],
500 ····['normalizedensities_5f_306',·['normalizeDensities_',·['../structgmx_1_1DensityFittingParameters.xhtml#a108b0f7f69ade1010f60a941430e1434',·1,·'gmx::DensityFittingParameters']]],500 ····['normalizedensities_5f_306',·['normalizeDensities_',·['../structgmx_1_1DensityFittingParameters.xhtml#a108b0f7f69ade1010f60a941430e1434',·1,·'gmx::DensityFittingParameters']]],
501 ····['normalizefreeenergyandpmfsum_307',·['normalizefreeenergyandpmfsum',·['../namespacegmx.xhtml#ac1a9213632dd1a11d0ad5eb64eb211cc',·1,·'gmx::normalizeFreeEnergyAndPmfSum()'],501 ····['normalizefreeenergyandpmfsum_307',·['normalizefreeenergyandpmfsum',·['../namespacegmx.xhtml#ac1a9213632dd1a11d0ad5eb64eb211cc',·1,·'gmx::normalizeFreeEnergyAndPmfSum()'],
502 ········['../classgmx_1_1PointState.xhtml#a9734176eb05174d67c84c4f6c1d44a6d',·1,·'gmx::PointState::normalizeFreeEnergyAndPmfSum()']502 ········['../classgmx_1_1PointState.xhtml#a9734176eb05174d67c84c4f6c1d44a6d',·1,·'gmx::PointState::normalizeFreeEnergyAndPmfSum()']
503 ····]],503 ····]],
504 ····['normalizeprobability_308',·['normalizeProbability',·['../classgmx_1_1AbstractAverageHistogram.xhtml#abc1ff464523654b5de9dd88ee7c036b4',·1,·'gmx::AbstractAverageHistogram']]],504 ····['normalizeprobability_308',·['normalizeProbability',·['../classgmx_1_1AbstractAverageHistogram.xhtml#abc1ff464523654b5de9dd88ee7c036b4',·1,·'gmx::AbstractAverageHistogram']]],
505 ····['normalizereferencedensity_309',·['normalizeReferenceDensity',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#aba089e24c17d4a809955ccb7fbcadd74',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup']]],505 ····['normalizereferencedensity_309',·['normalizeReferenceDensity',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#aba089e24c17d4a809955ccb7fbcadd74',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup']]],
506 ····['normalizesumpositivevaluestounity_310',·['normalizeSumPositiveValuesToUnity',·['../namespacegmx.xhtml#a327f10cbb6dad34a7a108b93d3f5d4e1',·1,·'gmx']]],506 ····['normalizesumpositivevaluestounity_310',·['normalizeSumPositiveValuesToUnity',·['../namespacegmx.xhtml#a327f10cbb6dad34a7a108b93d3f5d4e1',·1,·'gmx']]],
 507 ····['normalizevalue_311',·['normalizevalue',·['../classgmx_1_1EnumOptionStorage.xhtml#a714ef64c0797beedd1ffe8193b7b35a8',·1,·'gmx::EnumOptionStorage::normalizeValue()'],
507 ····['normalizevalue_311',·['normalizevalue',·['../classgmx_1_1OptionStorageTemplateSimple.xhtml#a7b800b3a96308ce591b6ae34cf5817b6',·1,·'gmx::OptionStorageTemplateSimple::normalizeValue()'],508 ········['../classgmx_1_1OptionStorageTemplateSimple.xhtml#a7b800b3a96308ce591b6ae34cf5817b6',·1,·'gmx::OptionStorageTemplateSimple::normalizeValue()']
508 ········['../classgmx_1_1EnumOptionStorage.xhtml#a714ef64c0797beedd1ffe8193b7b35a8',·1,·'gmx::EnumOptionStorage::normalizeValue()'] 
509 ····]],509 ····]],
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510 ····['normalizevalues_312',·['normalizevalues',·['../classgmx_1_1OptionInfo.xhtml#afa99b6a8d6f5e06151d7f3b0f8817cfa',·1,·'gmx::OptionInfo::normalizeValues()'],511 ········['../classgmx_1_1OptionInfo.xhtml#afa99b6a8d6f5e06151d7f3b0f8817cfa',·1,·'gmx::OptionInfo::normalizeValues()'],
 512 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a238bb8bb4773156da77fc2828453773e',·1,·'gmx::AbstractOptionStorage::normalizeValues()'],
511 ········['../classgmx_1_1SelectionOptionStorage.xhtml#acfb88582bb18c5a1876b8299e3097bc3',·1,·'gmx::SelectionOptionStorage::normalizeValues()'],513 ········['../classgmx_1_1SelectionOptionStorage.xhtml#acfb88582bb18c5a1876b8299e3097bc3',·1,·'gmx::SelectionOptionStorage::normalizeValues()'],
512 ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#a3ae5bffb43f83750b8784665cafed6c2',·1,·'gmx::SelectionFileOptionStorage::normalizeValues()'],514 ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#a3ae5bffb43f83750b8784665cafed6c2',·1,·'gmx::SelectionFileOptionStorage::normalizeValues()'],
513 ········['../classanonymous__namespace_02abstractoptionstorage_8cpp_03_1_1MockOptionStorage.xhtml#a41d05ec823b0c59328fe0272416509cf',·1,·'anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage::normalizeValues()'], 
514 ········['../classgmx_1_1OptionStorageTemplateSimple.xhtml#a24fb31501a4f2bcc6b4f8f4308b9737c',·1,·'gmx::OptionStorageTemplateSimple::normalizeValues()'],515 ········['../classgmx_1_1OptionStorageTemplateSimple.xhtml#a24fb31501a4f2bcc6b4f8f4308b9737c',·1,·'gmx::OptionStorageTemplateSimple::normalizeValues()']
515 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a238bb8bb4773156da77fc2828453773e',·1,·'gmx::AbstractOptionStorage::normalizeValues()'] 
516 ····]],516 ····]],
517 ····['normalmodes_2ecpp_313',·['normalmodes.cpp',·['../normalmodes_8cpp.xhtml',·1,·'']]],517 ····['normalmodes_2ecpp_313',·['normalmodes.cpp',·['../normalmodes_8cpp.xhtml',·1,·'']]],
518 ····['normalmodestest_314',·['NormalModesTest',·['../classgmx_1_1test_1_1anonymous__namespace_02normalmodes_8cpp_03_1_1NormalModesTest.xhtml',·1,·'gmx::test::anonymous_namespace{normalmodes.cpp}']]],518 ····['normalmodestest_314',·['NormalModesTest',·['../classgmx_1_1test_1_1anonymous__namespace_02normalmodes_8cpp_03_1_1NormalModesTest.xhtml',·1,·'gmx::test::anonymous_namespace{normalmodes.cpp}']]],
519 ····['nosehoover_5fvxi_315',·['nosehoover_vxi',·['../classt__state.xhtml#a349969aa77c689a1aa3d2a3f903ad2b3',·1,·'t_state::nosehoover_vxi'],519 ····['nosehoover_5fvxi_315',·['nosehoover_vxi',·['../classt__state.xhtml#a349969aa77c689a1aa3d2a3f903ad2b3',·1,·'t_state::nosehoover_vxi'],
520 ········['../structgmx_1_1PTCouplingArrays.xhtml#a6af6f95f1d4a30e290f6b724f0a313af',·1,·'gmx::PTCouplingArrays::nosehoover_vxi']520 ········['../structgmx_1_1PTCouplingArrays.xhtml#a6af6f95f1d4a30e290f6b724f0a313af',·1,·'gmx::PTCouplingArrays::nosehoover_vxi']
521 ····]],521 ····]],
522 ····['nosehoover_5fxi_316',·['nosehoover_xi',·['../structgmx_1_1PTCouplingArrays.xhtml#a611790ef9fc3907feed3c81b1c29b1db',·1,·'gmx::PTCouplingArrays::nosehoover_xi'],522 ····['nosehoover_5fxi_316',·['nosehoover_xi',·['../structgmx_1_1PTCouplingArrays.xhtml#a611790ef9fc3907feed3c81b1c29b1db',·1,·'gmx::PTCouplingArrays::nosehoover_xi'],
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15 ········['../tests_2observablesreducer_8cpp.xhtml',·1,·'(Global·Namespace)']15 ········['../tests_2observablesreducer_8cpp.xhtml',·1,·'(Global·Namespace)']
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63 ····['of_20packed_20j_20clusters_20of_20warps_38',·['of·packed·j·clusters·*·#·of·warps',·['../structNbnxm_1_1gpu__plist.xhtml#autotoc_md108',·1,·'']]],63 ····['of_20packed_20j_20clusters_20of_20warps_38',·['of·packed·j·clusters·*·#·of·warps',·['../structNbnxm_1_1gpu__plist.xhtml#autotoc_md108',·1,·'']]],
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65 ····['of_20the_20awh_20module_40',·['Design·of·the·AWH·module',·['../page_awh.xhtml#autotoc_md1',·1,·'']]],65 ····['of_20the_20awh_20module_40',·['Design·of·the·AWH·module',·['../page_awh.xhtml#autotoc_md1',·1,·'']]],
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72 ····]],72 ····]],
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75 ····['old_5fforces_47',·['old_forces',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#aca2bee71e3338893fafab79154a7d554',·1,·'gmx::ImdSession::Impl']]],75 ····['old_5fforces_47',·['old_forces',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#aca2bee71e3338893fafab79154a7d554',·1,·'gmx::ImdSession::Impl']]],
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77 ····['older_20approaches_49',·['Other·(older)·approaches',·['../page_modularsimulator.xhtml#autotoc_md44',·1,·'']]],77 ····['older_20approaches_49',·['Other·(older)·approaches',·['../page_modularsimulator.xhtml#autotoc_md44',·1,·'']]],
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92 ····['ontestend_64',·['onTestEnd',·['../classgmx_1_1test_1_1internal_1_1TestReferenceDataImpl.xhtml#a00dd48380162ea142ce4d55108cb22b5',·1,·'gmx::test::internal::TestReferenceDataImpl']]],92 ····['ontestend_64',·['onTestEnd',·['../classgmx_1_1test_1_1internal_1_1TestReferenceDataImpl.xhtml#a00dd48380162ea142ce4d55108cb22b5',·1,·'gmx::test::internal::TestReferenceDataImpl']]],
93 ····['ooplace_65',·['ooplace',·['../structgmx__fft__mkl.xhtml#a6063ea9aabe67817e0b64783a944cd44',·1,·'gmx_fft_mkl']]],93 ····['ooplace_65',·['ooplace',·['../structgmx__fft__mkl.xhtml#a6063ea9aabe67817e0b64783a944cd44',·1,·'gmx_fft_mkl']]],
94 ····['open_5fdhdl_66',·['open_dhdl',·['../energyoutput_8h.xhtml#ac18143d613e81608c3d21acefd4cd8f0',·1,·'open_dhdl(const·char·*filename,·const·t_inputrec·*ir,·const·gmx_output_env_t·*oenv):&#160;energyoutput.cpp'],94 ····['open_5fdhdl_66',·['open_dhdl',·['../energyoutput_8cpp.xhtml#ac18143d613e81608c3d21acefd4cd8f0',·1,·'open_dhdl(const·char·*filename,·const·t_inputrec·*ir,·const·gmx_output_env_t·*oenv):&#160;energyoutput.cpp'],
95 ········['../energyoutput_8cpp.xhtml#ac18143d613e81608c3d21acefd4cd8f0',·1,·'open_dhdl(const·char·*filename,·const·t_inputrec·*ir,·const·gmx_output_env_t·*oenv):&#160;energyoutput.cpp']95 ········['../energyoutput_8h.xhtml#ac18143d613e81608c3d21acefd4cd8f0',·1,·'open_dhdl(const·char·*filename,·const·t_inputrec·*ir,·const·gmx_output_env_t·*oenv):&#160;energyoutput.cpp']
96 ····]],96 ····]],
97 ····['open_5fsymtab_67',·['open_symtab',·['../symtab_8cpp.xhtml#ae00fb647f33d0a2ea330b2a3ca8e72c8',·1,·'open_symtab(t_symtab·*symtab):&#160;symtab.cpp'],97 ····['open_5fsymtab_67',·['open_symtab',·['../symtab_8cpp.xhtml#ae00fb647f33d0a2ea330b2a3ca8e72c8',·1,·'open_symtab(t_symtab·*symtab):&#160;symtab.cpp'],
98 ········['../symtab_8h.xhtml#ae00fb647f33d0a2ea330b2a3ca8e72c8',·1,·'open_symtab(t_symtab·*symtab):&#160;symtab.cpp']98 ········['../symtab_8h.xhtml#ae00fb647f33d0a2ea330b2a3ca8e72c8',·1,·'open_symtab(t_symtab·*symtab):&#160;symtab.cpp']
99 ····]],99 ····]],
100 ····['openbeforeforcecomputationcpu_68',·['openBeforeForceComputationCpu',·['../classDDBalanceRegionHandler.xhtml#ae72e0fa2568564942a80aa13c1df6bd1',·1,·'DDBalanceRegionHandler']]],100 ····['openbeforeforcecomputationcpu_68',·['openBeforeForceComputationCpu',·['../classDDBalanceRegionHandler.xhtml#ae72e0fa2568564942a80aa13c1df6bd1',·1,·'DDBalanceRegionHandler']]],
101 ····['openbeforeforcecomputationgpu_69',·['openBeforeForceComputationGpu',·['../classDDBalanceRegionHandler.xhtml#a5314136538ffb7bd39cc970ff054b0ca',·1,·'DDBalanceRegionHandler']]],101 ····['openbeforeforcecomputationgpu_69',·['openBeforeForceComputationGpu',·['../classDDBalanceRegionHandler.xhtml#a5314136538ffb7bd39cc970ff054b0ca',·1,·'DDBalanceRegionHandler']]],
102 ····['openbiasoutputfile_70',·['openBiasOutputFile',·['../classOutputFile.xhtml#a09d9265cd5a6ce74728f9064b6057cf1',·1,·'OutputFile']]],102 ····['openbiasoutputfile_70',·['openBiasOutputFile',·['../classOutputFile.xhtml#a09d9265cd5a6ce74728f9064b6057cf1',·1,·'OutputFile']]],
Offset 422, 17 lines modifiedOffset 422, 17 lines modified
422 ········['../classgmx_1_1ListOfLists.xhtml#acd74b039aaea684b78fc368d2b0bb289',·1,·'gmx::ListOfLists::operator[]()'],422 ········['../classgmx_1_1ListOfLists.xhtml#acd74b039aaea684b78fc368d2b0bb289',·1,·'gmx::ListOfLists::operator[]()'],
423 ········['../structgmx_1_1EnumerationArray.xhtml#a19f0ee284d558c5158a392189af41237',·1,·'gmx::EnumerationArray::operator[]()'],423 ········['../structgmx_1_1EnumerationArray.xhtml#a19f0ee284d558c5158a392189af41237',·1,·'gmx::EnumerationArray::operator[]()'],
424 ········['../classgmx_1_1ArrayRef.xhtml#ae5992e7e6c407d5f8fb0c08dd314b303',·1,·'gmx::ArrayRef::operator[]()'],424 ········['../classgmx_1_1ArrayRef.xhtml#ae5992e7e6c407d5f8fb0c08dd314b303',·1,·'gmx::ArrayRef::operator[]()'],
425 ········['../classStringTable.xhtml#ad323be1b121601515ed9af457ec5ddcc',·1,·'StringTable::operator[]()']425 ········['../classStringTable.xhtml#ad323be1b121601515ed9af457ec5ddcc',·1,·'StringTable::operator[]()']
426 ····]],426 ····]],
427 ····['operator_5e_133',·['operator^',·['../group__module__simd.xhtml#ga8385ef4b8312eff3f715d2f817604e51',·1,·'gmx::operator^(Simd4Float·a,·Simd4Float·b)'],427 ····['operator_5e_133',·['operator^',·['../group__module__simd.xhtml#ga8385ef4b8312eff3f715d2f817604e51',·1,·'gmx::operator^(Simd4Float·a,·Simd4Float·b)'],
428 ········['../group__module__simd.xhtml#gad65f7d7aa6d2a6c4b697ac0be0f3a616',·1,·'gmx::operator^(SimdDouble·a,·SimdDouble·b)'],428 ········['../group__module__simd.xhtml#gad65f7d7aa6d2a6c4b697ac0be0f3a616',·1,·'gmx::operator^(SimdDouble·a,·SimdDouble·b)'],
429 ········['../group__module__simd.xhtml#gaba7ccd2477ecf6b07f5b7696d9490038',·1,·'gmx::operator^(SimdDInt32·a,·SimdDInt32·b)'], 
430 ········['../group__module__simd.xhtml#ga37544015fbce9d2b11dce07e159e878b',·1,·'gmx::operator^(SimdFloat·a,·SimdFloat·b)'],429 ········['../group__module__simd.xhtml#ga37544015fbce9d2b11dce07e159e878b',·1,·'gmx::operator^(SimdFloat·a,·SimdFloat·b)'],
431 ········['../group__module__simd.xhtml#gabb7e81f2ef83cfb9aaae088c8762c2b0',·1,·'gmx::operator^(SimdFInt32·a,·SimdFInt32·b)'],430 ········['../group__module__simd.xhtml#gabb7e81f2ef83cfb9aaae088c8762c2b0',·1,·'gmx::operator^(SimdFInt32·a,·SimdFInt32·b)'],
 431 ········['../group__module__simd.xhtml#gaba7ccd2477ecf6b07f5b7696d9490038',·1,·'gmx::operator^(SimdDInt32·a,·SimdDInt32·b)'],
432 ········['../group__module__simd.xhtml#gaad7bb7baf5edd91a8707584c9cdc086e',·1,·'gmx::operator^(Simd4Double·a,·Simd4Double·b)']432 ········['../group__module__simd.xhtml#gaad7bb7baf5edd91a8707584c9cdc086e',·1,·'gmx::operator^(Simd4Double·a,·Simd4Double·b)']
433 ····]],433 ····]],
434 ····['operator_7c_134',·['operator|',·['../group__module__simd.xhtml#ga65d3eb9cd43b33b4665dfe676c0e79d2',·1,·'gmx::operator|(SimdDInt32·a,·SimdDInt32·b)'],434 ····['operator_7c_134',·['operator|',·['../group__module__simd.xhtml#ga65d3eb9cd43b33b4665dfe676c0e79d2',·1,·'gmx::operator|(SimdDInt32·a,·SimdDInt32·b)'],
435 ········['../group__module__simd.xhtml#gaf6f2042babc63e1b20b08ed61d859f74',·1,·'gmx::operator|(SimdFInt32·a,·SimdFInt32·b)'],435 ········['../group__module__simd.xhtml#gaf6f2042babc63e1b20b08ed61d859f74',·1,·'gmx::operator|(SimdFInt32·a,·SimdFInt32·b)'],
436 ········['../group__module__simd.xhtml#ga69973d1808eb0e8e60715d3abf01cd22',·1,·'gmx::operator|(SimdFloat·a,·SimdFloat·b)'],436 ········['../group__module__simd.xhtml#ga69973d1808eb0e8e60715d3abf01cd22',·1,·'gmx::operator|(SimdFloat·a,·SimdFloat·b)'],
437 ········['../group__module__simd.xhtml#ga72cbfbcd5395b355e242f2ef4284f5c5',·1,·'gmx::operator|(SimdDouble·a,·SimdDouble·b)'],437 ········['../group__module__simd.xhtml#ga72cbfbcd5395b355e242f2ef4284f5c5',·1,·'gmx::operator|(SimdDouble·a,·SimdDouble·b)'],
438 ········['../group__module__simd.xhtml#gad759e852213903c61d6d4b9053e794fc',·1,·'gmx::operator|(Simd4Float·a,·Simd4Float·b)'],438 ········['../group__module__simd.xhtml#gad759e852213903c61d6d4b9053e794fc',·1,·'gmx::operator|(Simd4Float·a,·Simd4Float·b)'],
Offset 481, 16 lines modifiedOffset 481, 16 lines modified
481 ····['opt2parg_5freal_150',·['opt2parg_real',·['../group__module__commandline.xhtml#gae89406e3a37c9f5ef580a3362fce2cd7',·1,·'opt2parg_real(const·char·*option,·int·nparg,·t_pargs·pa[]):&#160;pargs.cpp'],481 ····['opt2parg_5freal_150',·['opt2parg_real',·['../group__module__commandline.xhtml#gae89406e3a37c9f5ef580a3362fce2cd7',·1,·'opt2parg_real(const·char·*option,·int·nparg,·t_pargs·pa[]):&#160;pargs.cpp'],
482 ········['../group__module__commandline.xhtml#gae89406e3a37c9f5ef580a3362fce2cd7',·1,·'opt2parg_real(const·char·*option,·int·nparg,·t_pargs·pa[]):&#160;pargs.cpp']482 ········['../group__module__commandline.xhtml#gae89406e3a37c9f5ef580a3362fce2cd7',·1,·'opt2parg_real(const·char·*option,·int·nparg,·t_pargs·pa[]):&#160;pargs.cpp']
483 ····]],483 ····]],
484 ····['opt2parg_5fstr_151',·['opt2parg_str',·['../group__module__commandline.xhtml#ga80e94dc67a2b2b515f6bce576875e7e9',·1,·'opt2parg_str(const·char·*option,·int·nparg,·t_pargs·pa[]):&#160;pargs.cpp'],484 ····['opt2parg_5fstr_151',·['opt2parg_str',·['../group__module__commandline.xhtml#ga80e94dc67a2b2b515f6bce576875e7e9',·1,·'opt2parg_str(const·char·*option,·int·nparg,·t_pargs·pa[]):&#160;pargs.cpp'],
485 ········['../group__module__commandline.xhtml#ga80e94dc67a2b2b515f6bce576875e7e9',·1,·'opt2parg_str(const·char·*option,·int·nparg,·t_pargs·pa[]):&#160;pargs.cpp']485 ········['../group__module__commandline.xhtml#ga80e94dc67a2b2b515f6bce576875e7e9',·1,·'opt2parg_str(const·char·*option,·int·nparg,·t_pargs·pa[]):&#160;pargs.cpp']
486 ····]],486 ····]],
487 ····['optimisationresult_152',·['OptimisationResult',·['../structgmx_1_1OptimisationResult.xhtml',·1,·'gmx']]],487 ····['optimisationresult_152',·['OptimisationResult',·['../structgmx_1_1OptimisationResult.xhtml',·1,·'gmx']]],
488 ····['optimization_2ecpp_153',·['optimization.cpp',·['../optimization_8cpp.xhtml',·1,·'(Global·Namespace)'],488 ····['optimization_2ecpp_153',·['optimization.cpp',·['../tests_2optimization_8cpp.xhtml',·1,·'(Global·Namespace)'],
489 ········['../tests_2optimization_8cpp.xhtml',·1,·'(Global·Namespace)']489 ········['../optimization_8cpp.xhtml',·1,·'(Global·Namespace)']
490 ····]],490 ····]],
491 ····['optimization_2eh_154',·['optimization.h',·['../optimization_8h.xhtml',·1,·'']]],491 ····['optimization_2eh_154',·['optimization.h',·['../optimization_8h.xhtml',·1,·'']]],
492 ····['optimize_5farithmetic_5fexpressions_155',·['optimize_arithmetic_expressions',·['../compiler_8cpp.xhtml#aa22e901f96e3edaa72c2e222ed75bd01',·1,·'compiler.cpp']]],492 ····['optimize_5farithmetic_5fexpressions_155',·['optimize_arithmetic_expressions',·['../compiler_8cpp.xhtml#aa22e901f96e3edaa72c2e222ed75bd01',·1,·'compiler.cpp']]],
493 ····['optimize_5fboolean_5fexpressions_156',·['optimize_boolean_expressions',·['../compiler_8cpp.xhtml#aaf983339164e05e4e7319e88683ca6d6',·1,·'compiler.cpp']]],493 ····['optimize_5fboolean_5fexpressions_156',·['optimize_boolean_expressions',·['../compiler_8cpp.xhtml#aaf983339164e05e4e7319e88683ca6d6',·1,·'compiler.cpp']]],
494 ····['optimize_5fsurface_5fpoints_157',·['optimize_surface_points',·['../sm__insolidangle_8cpp.xhtml#aadef1b206fd479d83a526a388faa275e',·1,·'sm_insolidangle.cpp']]],494 ····['optimize_5fsurface_5fpoints_157',·['optimize_surface_points',·['../sm__insolidangle_8cpp.xhtml#aadef1b206fd479d83a526a388faa275e',·1,·'sm_insolidangle.cpp']]],
495 ····['optimizeddcells_158',·['optimizeDDCells',·['../domdec__setup_8cpp.xhtml#a0116fb195a0ff21854f683c3d8676b5a',·1,·'domdec_setup.cpp']]],495 ····['optimizeddcells_158',·['optimizeDDCells',·['../domdec__setup_8cpp.xhtml#a0116fb195a0ff21854f683c3d8676b5a',·1,·'domdec_setup.cpp']]],
496 ····['option_159',·['option',·['../classgmx_1_1OptionInfo.xhtml#adc99ae3c6896ed469ae9a4aff7423cd9',·1,·'gmx::OptionInfo::option()·const'],496 ····['option_159',·['option',·['../classgmx_1_1OptionInfo.xhtml#adc99ae3c6896ed469ae9a4aff7423cd9',·1,·'gmx::OptionInfo::option()·const'],
Offset 500, 119 lines modifiedOffset 500, 119 lines modified
500 ····['option_20module_20parameters_160',·['Storing·non-mdp·option·module·parameters',·['../page_mdmodules.xhtml#autotoc_md7',·1,·'']]],500 ····['option_20module_20parameters_160',·['Storing·non-mdp·option·module·parameters',·['../page_mdmodules.xhtml#autotoc_md7',·1,·'']]],
501 ····['option_2ecpp_161',·['option.cpp',·['../option_8cpp.xhtml',·1,·'']]],501 ····['option_2ecpp_161',·['option.cpp',·['../option_8cpp.xhtml',·1,·'']]],
502 ····['optionfiletype_162',·['OptionFileType',·['../group__module__options.xhtml#ga322a6d38e527f46b273c08583a31665d',·1,·'gmx']]],502 ····['optionfiletype_162',·['OptionFileType',·['../group__module__options.xhtml#ga322a6d38e527f46b273c08583a31665d',·1,·'gmx']]],
503 ····['optionfiletype_2eh_163',·['optionfiletype.h',·['../optionfiletype_8h.xhtml',·1,·'']]],503 ····['optionfiletype_2eh_163',·['optionfiletype.h',·['../optionfiletype_8h.xhtml',·1,·'']]],
504 ····['optionflag_164',·['OptionFlag',·['../namespacegmx.xhtml#ad86fc7354045be1e1456c019b8f97c25',·1,·'gmx']]],504 ····['optionflag_164',·['OptionFlag',·['../namespacegmx.xhtml#ad86fc7354045be1e1456c019b8f97c25',·1,·'gmx']]],
505 ····['optionflags_165',·['OptionFlags',·['../namespacegmx.xhtml#a0b60cc84dcdf372e00a5084712630993',·1,·'gmx']]],505 ····['optionflags_165',·['OptionFlags',·['../namespacegmx.xhtml#a0b60cc84dcdf372e00a5084712630993',·1,·'gmx']]],
506 ····['optionflags_2eh_166',·['optionflags.h',·['../optionflags_8h.xhtml',·1,·'']]],506 ····['optionflags_2eh_166',·['optionflags.h',·['../optionflags_8h.xhtml',·1,·'']]],
507 ····['optioninfo_167',·['optioninfo',·['../classgmx_1_1EnumOptionStorage.xhtml#adbdf1a9b814e0e4ce1d33726c51c3527',·1,·'gmx::EnumOptionStorage::optionInfo()'],507 ····['optioninfo_167',·['optioninfo',·['../classgmx_1_1OptionInfo.xhtml',·1,·'gmx::OptionInfo'],
 508 ········['../classgmx_1_1OptionInfo.xhtml#a28702d9e5916402f81fe48c541a260bc',·1,·'gmx::OptionInfo::OptionInfo()'],
 509 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a14a9360077f79b7c0f768260fa807796',·1,·'gmx::AbstractOptionStorage::optionInfo()'],
508 ········['../classgmx_1_1StringOptionStorage.xhtml#adfec3df516810853d338d2a19f3082cb',·1,·'gmx::StringOptionStorage::optionInfo()'],510 ········['../classgmx_1_1BooleanOptionStorage.xhtml#a6dcd9cecae230e1d8f9551d329fb6fbc',·1,·'gmx::BooleanOptionStorage::optionInfo()'],
 511 ········['../classgmx_1_1IntegerOptionStorage.xhtml#a51929f25babbe05a1b8829acd081702a',·1,·'gmx::IntegerOptionStorage::optionInfo()'],
 512 ········['../classgmx_1_1Int64OptionStorage.xhtml#a3b575c5b59217bd0f94ff8a44aa1c9b5',·1,·'gmx::Int64OptionStorage::optionInfo()'],
 513 ········['../classgmx_1_1DoubleOptionStorage.xhtml#a6a468029afea3a69795399893e9c9e61',·1,·'gmx::DoubleOptionStorage::optionInfo()'],
509 ········['../classgmx_1_1FloatOptionStorage.xhtml#a22c2a72cd49b6566794868f635f363fb',·1,·'gmx::FloatOptionStorage::optionInfo()'],514 ········['../classgmx_1_1FloatOptionStorage.xhtml#a22c2a72cd49b6566794868f635f363fb',·1,·'gmx::FloatOptionStorage::optionInfo()'],
 515 ········['../classgmx_1_1StringOptionStorage.xhtml#adfec3df516810853d338d2a19f3082cb',·1,·'gmx::StringOptionStorage::optionInfo()'],
 516 ········['../classgmx_1_1EnumOptionStorage.xhtml#adbdf1a9b814e0e4ce1d33726c51c3527',·1,·'gmx::EnumOptionStorage::optionInfo()'],
510 ········['../classgmx_1_1FileNameOptionStorage.xhtml#ac565fab34f14163b1e8591c73b13179b',·1,·'gmx::FileNameOptionStorage::optionInfo()'],517 ········['../classgmx_1_1FileNameOptionStorage.xhtml#ac565fab34f14163b1e8591c73b13179b',·1,·'gmx::FileNameOptionStorage::optionInfo()'],
511 ········['../classanonymous__namespace_02abstractoptionstorage_8cpp_03_1_1MockOptionStorage.xhtml#a5446c9407810dc3c5c99e88031f75e66',·1,·'anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage::optionInfo()'],518 ········['../classanonymous__namespace_02abstractoptionstorage_8cpp_03_1_1MockOptionStorage.xhtml#a5446c9407810dc3c5c99e88031f75e66',·1,·'anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage::optionInfo()'],
512 ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#ae7e23ab9895809f8529112419a0d6868',·1,·'gmx::SelectionFileOptionStorage::optionInfo()'],519 ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#ae7e23ab9895809f8529112419a0d6868',·1,·'gmx::SelectionFileOptionStorage::optionInfo()'],
513 ········['../classgmx_1_1SelectionOptionStorage.xhtml#a92005e65992f933cee89ac8e73364c26',·1,·'gmx::SelectionOptionStorage::optionInfo()'],520 ········['../classgmx_1_1SelectionOptionStorage.xhtml#a92005e65992f933cee89ac8e73364c26',·1,·'gmx::SelectionOptionStorage::optionInfo()']
514 ········['../classgmx_1_1DoubleOptionStorage.xhtml#a6a468029afea3a69795399893e9c9e61',·1,·'gmx::DoubleOptionStorage::optionInfo()'], 
515 ········['../classgmx_1_1Int64OptionStorage.xhtml#a3b575c5b59217bd0f94ff8a44aa1c9b5',·1,·'gmx::Int64OptionStorage::optionInfo()'], 
516 ········['../classgmx_1_1IntegerOptionStorage.xhtml#a51929f25babbe05a1b8829acd081702a',·1,·'gmx::IntegerOptionStorage::optionInfo()'], 
517 ········['../classgmx_1_1BooleanOptionStorage.xhtml#a6dcd9cecae230e1d8f9551d329fb6fbc',·1,·'gmx::BooleanOptionStorage::optionInfo()'], 
518 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a14a9360077f79b7c0f768260fa807796',·1,·'gmx::AbstractOptionStorage::optionInfo()'], 
519 ········['../classgmx_1_1OptionInfo.xhtml#a28702d9e5916402f81fe48c541a260bc',·1,·'gmx::OptionInfo::OptionInfo()'], 
520 ········['../classgmx_1_1OptionInfo.xhtml',·1,·'gmx::OptionInfo'] 
521 ····]],521 ····]],
522 ····['optionlist_168',·['optionlist',·['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#abd2f04d3b754c9be06639ee28a16e0e7',·1,·'gmx::internal::OptionSectionImpl::Group::OptionList'],522 ····['optionlist_168',·['optionlist',·['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#abd2f04d3b754c9be06639ee28a16e0e7',·1,·'gmx::internal::OptionSectionImpl::Group::OptionList'],
523 ········['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#a9bcab8534a29f710047bfcccba220da1',·1,·'gmx::SelectionOptionManager::Impl::OptionList']523 ········['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#a9bcab8534a29f710047bfcccba220da1',·1,·'gmx::SelectionOptionManager::Impl::OptionList']
524 ····]],524 ····]],
525 ····['optionmanagercontainer_169',·['OptionManagerContainer',·['../classgmx_1_1OptionManagerContainer.xhtml',·1,·'gmx']]],525 ····['optionmanagercontainer_169',·['OptionManagerContainer',·['../classgmx_1_1OptionManagerContainer.xhtml',·1,·'gmx']]],
526 ····['optionmanagercontainer_2eh_170',·['optionmanagercontainer.h',·['../optionmanagercontainer_8h.xhtml',·1,·'']]],526 ····['optionmanagercontainer_2eh_170',·['optionmanagercontainer.h',·['../optionmanagercontainer_8h.xhtml',·1,·'']]],
527 ····['optionmap_171',·['OptionMap',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aa8de9d9b14647ede508a45dfb7ebbd22',·1,·'gmx::internal::OptionSectionImpl']]],527 ····['optionmap_171',·['OptionMap',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aa8de9d9b14647ede508a45dfb7ebbd22',·1,·'gmx::internal::OptionSectionImpl']]],
528 ····['optionmap_5f_172',·['optionMap_',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aec29c46247eccc69f7ffa3f5c9cebed4',·1,·'gmx::internal::OptionSectionImpl']]],528 ····['optionmap_5f_172',·['optionMap_',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aec29c46247eccc69f7ffa3f5c9cebed4',·1,·'gmx::internal::OptionSectionImpl']]],
529 ····['options_173',·['options',·['../page_trajectoryanalysisframework.xhtml#section_trajectoryanalysisframework_options',·1,·'Input·options'],529 ····['options_173',·['options',·['../page_trajectoryanalysisframework.xhtml#section_trajectoryanalysisframework_options',·1,·'Input·options'],
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Offset 47, 16 lines modifiedOffset 47, 16 lines modified
47 ····['pagealignedallocator_27',·['PageAlignedAllocator',·['../namespacegmx.xhtml#af01c69345463ebb433d1fedfd356b74a',·1,·'gmx']]],47 ····['pagealignedallocator_27',·['PageAlignedAllocator',·['../namespacegmx.xhtml#af01c69345463ebb433d1fedfd356b74a',·1,·'gmx']]],
48 ····['pagesize_28',·['pageSize',·['../namespacegmx.xhtml#a41f63c30185ee31c10a30e46b7d53f9d',·1,·'gmx']]],48 ····['pagesize_28',·['pageSize',·['../namespacegmx.xhtml#a41f63c30185ee31c10a30e46b7d53f9d',·1,·'gmx']]],
49 ····['pair_29',·['pair',·['../structnbnxn__excl__t.xhtml#afc916c53f9b67e8172dc309ddd33a550',·1,·'nbnxn_excl_t::pair'],49 ····['pair_29',·['pair',·['../structnbnxn__excl__t.xhtml#afc916c53f9b67e8172dc309ddd33a550',·1,·'nbnxn_excl_t::pair'],
50 ········['../namespacegmx.xhtml#ad4174b02d2bfb10e8538d4844ecc6f81ad0bd662806a73209a1c6fbe55591fbff',·1,·'gmx::Pair']50 ········['../namespacegmx.xhtml#ad4174b02d2bfb10e8538d4844ecc6f81ad0bd662806a73209a1c6fbe55591fbff',·1,·'gmx::Pair']
51 ····]],51 ····]],
52 ····['pair_20interactions_30',·['Non-bonded·pair·interactions',·['../group__module__nbnxm.xhtml',·1,·'']]],52 ····['pair_20interactions_30',·['Non-bonded·pair·interactions',·['../group__module__nbnxm.xhtml',·1,·'']]],
53 ····['paircountwithincutoff_31',·['pairCountWithinCutoff',·['../namespacegmx.xhtml#a246c6fa4555b021df975ad1b7f7697c2',·1,·'gmx']]],53 ····['paircountwithincutoff_31',·['pairCountWithinCutoff',·['../namespacegmx.xhtml#a246c6fa4555b021df975ad1b7f7697c2',·1,·'gmx']]],
54 ····['pairdist_2ecpp_32',·['pairdist.cpp',·['../modules_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)'],54 ····['pairdist_2ecpp_32',·['pairdist.cpp',·['../tests_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)'],
55 ········['../tests_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)']55 ········['../modules_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)']
56 ····]],56 ····]],
57 ····['pairdist_2eh_33',·['pairdist.h',·['../pairdist_8h.xhtml',·1,·'']]],57 ····['pairdist_2eh_33',·['pairdist.h',·['../pairdist_8h.xhtml',·1,·'']]],
58 ····['pairdistance_34',·['PairDistance',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistance.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}']]],58 ····['pairdistance_34',·['PairDistance',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistance.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}']]],
59 ····['pairdistancemoduledata_35',·['pairdistancemoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml#aee31955e41d398a1738d90c17b9448d7',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData::PairDistanceModuleData()'],59 ····['pairdistancemoduledata_35',·['pairdistancemoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml#aee31955e41d398a1738d90c17b9448d7',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData::PairDistanceModuleData()'],
60 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData']60 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData']
61 ····]],61 ····]],
62 ····['pairdistancemoduletest_36',·['PairDistanceModuleTest',·['../namespaceanonymous__namespace_02pairdist_8cpp_03.xhtml#a84bed762b296d3484c2acf0c86895c00',·1,·'anonymous_namespace{pairdist.cpp}']]],62 ····['pairdistancemoduletest_36',·['PairDistanceModuleTest',·['../namespaceanonymous__namespace_02pairdist_8cpp_03.xhtml#a84bed762b296d3484c2acf0c86895c00',·1,·'anonymous_namespace{pairdist.cpp}']]],
Offset 166, 16 lines modifiedOffset 166, 16 lines modified
166 ····['params_85',·['params',·['../structnbnxn__atomdata__t_1_1Params.xhtml',·1,·'nbnxn_atomdata_t::Params'],166 ····['params_85',·['params',·['../structnbnxn__atomdata__t_1_1Params.xhtml',·1,·'nbnxn_atomdata_t::Params'],
167 ········['../classgmx_1_1Bias.xhtml#a951312320562accc324fb9800a88cf66',·1,·'gmx::Bias::params()'],167 ········['../classgmx_1_1Bias.xhtml#a951312320562accc324fb9800a88cf66',·1,·'gmx::Bias::params()'],
168 ········['../structnbnxn__atomdata__t.xhtml#ac3864a809c4acc376ece4da861023ba8',·1,·'nbnxn_atomdata_t::params()'],168 ········['../structnbnxn__atomdata__t.xhtml#ac3864a809c4acc376ece4da861023ba8',·1,·'nbnxn_atomdata_t::params()'],
169 ········['../classPairlistSets.xhtml#a2aa01e35c546f7101d39342b71bbbaf7',·1,·'PairlistSets::params()'],169 ········['../classPairlistSets.xhtml#a2aa01e35c546f7101d39342b71bbbaf7',·1,·'PairlistSets::params()'],
170 ········['../structnbnxn__atomdata__t_1_1Params.xhtml#a35594485444d2e2b8bd339534e43fc97',·1,·'nbnxn_atomdata_t::Params::Params()']170 ········['../structnbnxn__atomdata__t_1_1Params.xhtml#a35594485444d2e2b8bd339534e43fc97',·1,·'nbnxn_atomdata_t::Params::Params()']
171 ····]],171 ····]],
172 ····['params_2ecpp_86',·['params.cpp',·['../params_8cpp.xhtml',·1,·'']]],172 ····['params_2ecpp_86',·['params.cpp',·['../params_8cpp.xhtml',·1,·'']]],
173 ····['params_5f_87',·['params_',·['../structpull__coord__work__t.xhtml#a319cdb59032343d6d540cd21b5024e8e',·1,·'pull_coord_work_t::params_'], 
174 ········['../structpull__group__work__t.xhtml#ab664c600643cb118701d8964d662d64b',·1,·'pull_group_work_t::params_']173 ····['params_5f_87',·['params_',·['../structpull__group__work__t.xhtml#ab664c600643cb118701d8964d662d64b',·1,·'pull_group_work_t::params_'],
 174 ········['../structpull__coord__work__t.xhtml#a319cdb59032343d6d540cd21b5024e8e',·1,·'pull_coord_work_t::params_']
175 ····]],175 ····]],
176 ····['paramsdeprecated_88',·['paramsDeprecated',·['../structnbnxn__atomdata__t.xhtml#a03a3ce4f7c1c6874c05bc585fdd354af',·1,·'nbnxn_atomdata_t']]],176 ····['paramsdeprecated_88',·['paramsDeprecated',·['../structnbnxn__atomdata__t.xhtml#a03a3ce4f7c1c6874c05bc585fdd354af',·1,·'nbnxn_atomdata_t']]],
177 ····['parent_5f_89',·['parent_',·['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#ab647ddc3f864cc30b88a14ffb7c63507',·1,·'gmx::internal::OptionSectionImpl::Group']]],177 ····['parent_5f_89',·['parent_',·['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#ab647ddc3f864cc30b88a14ffb7c63507',·1,·'gmx::internal::OptionSectionImpl::Group']]],
178 ····['pargs_2ecpp_90',·['pargs.cpp',·['../tests_2pargs_8cpp.xhtml',·1,·'']]],178 ····['pargs_2ecpp_90',·['pargs.cpp',·['../tests_2pargs_8cpp.xhtml',·1,·'']]],
179 ····['pargs_2eh_91',·['pargs.h',·['../pargs_8h.xhtml',·1,·'']]],179 ····['pargs_2eh_91',·['pargs.h',·['../pargs_8h.xhtml',·1,·'']]],
180 ····['pargstooptions_92',·['pargsToOptions',·['../classgmx_1_1anonymous__namespace_02pargs_8cpp_03_1_1OptionsAdapter.xhtml#acdf7b251332b87229e04e42f1cb70d18',·1,·'gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter']]],180 ····['pargstooptions_92',·['pargsToOptions',·['../classgmx_1_1anonymous__namespace_02pargs_8cpp_03_1_1OptionsAdapter.xhtml#acdf7b251332b87229e04e42f1cb70d18',·1,·'gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter']]],
181 ····['parrinellorahmanbarostat_93',·['parrinellorahmanbarostat',·['../classgmx_1_1ParrinelloRahmanBarostat.xhtml',·1,·'gmx::ParrinelloRahmanBarostat'],181 ····['parrinellorahmanbarostat_93',·['parrinellorahmanbarostat',·['../classgmx_1_1ParrinelloRahmanBarostat.xhtml',·1,·'gmx::ParrinelloRahmanBarostat'],
Offset 243, 16 lines modifiedOffset 243, 16 lines modified
243 ····['pause_145',·['Pause',·['../namespacegmx.xhtml#aa72f45c17038ea5aae00ba6b17cab901a105b296a83f9c105355403f3332af50f',·1,·'gmx']]],243 ····['pause_145',·['Pause',·['../namespacegmx.xhtml#aa72f45c17038ea5aae00ba6b17cab901a105b296a83f9c105355403f3332af50f',·1,·'gmx']]],
244 ····['pbc_146',·['pbc',·['../structgmx__sel__evaluate__t.xhtml#ad45dbdc326186b045973ef3ba68bf677',·1,·'gmx_sel_evaluate_t::pbc'],244 ····['pbc_146',·['pbc',·['../structgmx__sel__evaluate__t.xhtml#ad45dbdc326186b045973ef3ba68bf677',·1,·'gmx_sel_evaluate_t::pbc'],
245 ········['../classgmx_1_1VirtualSitesHandler.xhtml#a9bc9f8f9c0f9558d09bf4b5ed0273e3ba0fa76fc9cd273da2983f32b5f228e490',·1,·'gmx::VirtualSitesHandler::Pbc'],245 ········['../classgmx_1_1VirtualSitesHandler.xhtml#a9bc9f8f9c0f9558d09bf4b5ed0273e3ba0fa76fc9cd273da2983f32b5f228e490',·1,·'gmx::VirtualSitesHandler::Pbc'],
246 ········['../classgmx_1_1TrajectoryFrame.xhtml#a582f593e420137d31acaf230d0b0f4c3',·1,·'gmx::TrajectoryFrame::pbc()'],246 ········['../classgmx_1_1TrajectoryFrame.xhtml#a582f593e420137d31acaf230d0b0f4c3',·1,·'gmx::TrajectoryFrame::pbc()'],
247 ········['../structt__swap.xhtml#aa56af1174023261f045e7846a7736772',·1,·'t_swap::pbc'],247 ········['../structt__swap.xhtml#aa56af1174023261f045e7846a7736772',·1,·'t_swap::pbc'],
248 ········['../namespacegmx.xhtml#a63cf11bdf7c50436e7a754d50689f362a0fa76fc9cd273da2983f32b5f228e490',·1,·'gmx::Pbc']248 ········['../namespacegmx.xhtml#a63cf11bdf7c50436e7a754d50689f362a0fa76fc9cd273da2983f32b5f228e490',·1,·'gmx::Pbc']
249 ····]],249 ····]],
250 ····['pbc_2ecpp_147',·['pbc.cpp',·['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)'],250 ····['pbc_2ecpp_147',·['pbc.cpp',·['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)'],
251 ········['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)']251 ········['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)']
252 ····]],252 ····]],
253 ····['pbc_5f_148',·['pbc_',·['../structgmx_1_1SelMethodEvalContext.xhtml#ab12ab95ec24bd1ca9d76d39ed729005b',·1,·'gmx::SelMethodEvalContext']]],253 ····['pbc_5f_148',·['pbc_',·['../structgmx_1_1SelMethodEvalContext.xhtml#ab12ab95ec24bd1ca9d76d39ed729005b',·1,·'gmx::SelMethodEvalContext']]],
254 ····['pbc_5faiuc_2eh_149',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]],254 ····['pbc_5faiuc_2eh_149',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]],
255 ····['pbc_5faiuc_5fsycl_2eh_150',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]],255 ····['pbc_5faiuc_5fsycl_2eh_150',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]],
256 ····['pbc_5fdx_151',·['pbc_dx',·['../pbc_8cpp.xhtml#a9d6a489816eadddbdbd19509b0ff5e46',·1,·'pbc.cpp']]],256 ····['pbc_5fdx_151',·['pbc_dx',·['../pbc_8cpp.xhtml#a9d6a489816eadddbdbd19509b0ff5e46',·1,·'pbc.cpp']]],
257 ····['pbc_5fdx_5faiuc_152',·['pbc_dx_aiuc',·['../pbc_8cpp.xhtml#a4493bda77a264b3e5e060e5be15e40ac',·1,·'pbc.cpp']]],257 ····['pbc_5fdx_5faiuc_152',·['pbc_dx_aiuc',·['../pbc_8cpp.xhtml#a4493bda77a264b3e5e060e5be15e40ac',·1,·'pbc.cpp']]],
258 ····['pbc_5fdx_5fd_153',·['pbc_dx_d',·['../pbc_8cpp.xhtml#ab8b82070cfe00adb5de6c225e7b2266a',·1,·'pbc.cpp']]],258 ····['pbc_5fdx_5fd_153',·['pbc_dx_d',·['../pbc_8cpp.xhtml#ab8b82070cfe00adb5de6c225e7b2266a',·1,·'pbc.cpp']]],
Offset 299, 16 lines modifiedOffset 299, 16 lines modified
299 ····['pca_5ftime_5funit_179',·['PCA_TIME_UNIT',·['../group__module__commandline.xhtml#gaee728fbd6eefa75a2ba5321436783f09',·1,·'pargs.h']]],299 ····['pca_5ftime_5funit_179',·['PCA_TIME_UNIT',·['../group__module__commandline.xhtml#gaee728fbd6eefa75a2ba5321436783f09',·1,·'pargs.h']]],
300 ····['pcc_180',·['pcc',·['../structgmx__ana__selcollection__t.xhtml#a7ca411d466e27dbd50ab5c115c3f3598',·1,·'gmx_ana_selcollection_t::pcc'],300 ····['pcc_180',·['pcc',·['../structgmx__ana__selcollection__t.xhtml#a7ca411d466e27dbd50ab5c115c3f3598',·1,·'gmx_ana_selcollection_t::pcc'],
301 ········['../structt__methoddata__pos.xhtml#a6c3f5f28ba101c4f4c0beb6b36108fc8',·1,·'t_methoddata_pos::pcc']301 ········['../structt__methoddata__pos.xhtml#a6c3f5f28ba101c4f4c0beb6b36108fc8',·1,·'t_methoddata_pos::pcc']
302 ····]],302 ····]],
303 ····['pcomp_181',·['pcomp',·['../namespacegmx.xhtml#a4348fa412ed90d2fc34e3a662700fc14',·1,·'gmx']]],303 ····['pcomp_181',·['pcomp',·['../namespacegmx.xhtml#a4348fa412ed90d2fc34e3a662700fc14',·1,·'gmx']]],
304 ····['pcrd_182',·['pcrd',·['../structt__UmbrellaHeader.xhtml#af3928e9091907c4b80faf2c14e0f6691',·1,·'t_UmbrellaHeader']]],304 ····['pcrd_182',·['pcrd',·['../structt__UmbrellaHeader.xhtml#af3928e9091907c4b80faf2c14e0f6691',·1,·'t_UmbrellaHeader']]],
305 ····['pdb2gmx_2ecpp_183',·['pdb2gmx.cpp',·['../tests_2pdb2gmx_8cpp.xhtml',·1,·'']]],305 ····['pdb2gmx_2ecpp_183',·['pdb2gmx.cpp',·['../tests_2pdb2gmx_8cpp.xhtml',·1,·'']]],
306 ····['pdbatomentry_184',·['pdbatomentry',·['../classPdbAtomEntry.xhtml',·1,·'PdbAtomEntry'],306 ····['pdbatomentry_184',·['pdbatomentry',·['../classPdbAtomEntry.xhtml#a9e2db6cde6cf306ae454740166a14f0a',·1,·'PdbAtomEntry::PdbAtomEntry()'],
307 ········['../classPdbAtomEntry.xhtml#a9e2db6cde6cf306ae454740166a14f0a',·1,·'PdbAtomEntry::PdbAtomEntry(PdbRecordType·type,·int·pdbAtomNumber,·char·alternativeLocation,·const·std::string·&amp;atomName)'],307 ········['../classPdbAtomEntry.xhtml',·1,·'PdbAtomEntry'],
308 ········['../classPdbAtomEntry.xhtml#a85fd7b8e5fc4a9f92e47456562f727ca',·1,·'PdbAtomEntry::PdbAtomEntry(PdbRecordType·type,·int·pdbAtomNumber,·char·alternativeLocation,·const·std::string·&amp;atomName,·std::optional&lt;·real·&gt;·occupancy,·std::optional&lt;·real·&gt;·bFactor)'],308 ········['../classPdbAtomEntry.xhtml#a85fd7b8e5fc4a9f92e47456562f727ca',·1,·'PdbAtomEntry::PdbAtomEntry(PdbRecordType·type,·int·pdbAtomNumber,·char·alternativeLocation,·const·std::string·&amp;atomName,·std::optional&lt;·real·&gt;·occupancy,·std::optional&lt;·real·&gt;·bFactor)'],
309 ········['../classPdbAtomEntry.xhtml#aa55e1d8e53d49f0cb617b95d0daead1d',·1,·'PdbAtomEntry::PdbAtomEntry(PdbRecordType·type,·int·atomSerialNumber,·char·alternativeLocation,·const·std::string·&amp;atomName,·std::optional&lt;·real·&gt;·occupancy,·std::optional&lt;·real·&gt;·bFactor,·std::optional&lt;·std::array&lt;·real,·6·&gt;·&gt;·anisotropy)']309 ········['../classPdbAtomEntry.xhtml#aa55e1d8e53d49f0cb617b95d0daead1d',·1,·'PdbAtomEntry::PdbAtomEntry(PdbRecordType·type,·int·atomSerialNumber,·char·alternativeLocation,·const·std::string·&amp;atomName,·std::optional&lt;·real·&gt;·occupancy,·std::optional&lt;·real·&gt;·bFactor,·std::optional&lt;·std::array&lt;·real,·6·&gt;·&gt;·anisotropy)']
310 ····]],310 ····]],
311 ····['pdbatomsselection_185',·['PdbAtomsSelection',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02select_8cpp_03.xhtml#ad52b61bac3000f27e05792835bd38202',·1,·'gmx::analysismodules::anonymous_namespace{select.cpp}']]],311 ····['pdbatomsselection_185',·['PdbAtomsSelection',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02select_8cpp_03.xhtml#ad52b61bac3000f27e05792835bd38202',·1,·'gmx::analysismodules::anonymous_namespace{select.cpp}']]],
312 ····['peerrankid_186',·['peerRankId',·['../structgmx__pme__pp.xhtml#afde76cd2a9bb4a6adbdea033648276de',·1,·'gmx_pme_pp']]],312 ····['peerrankid_186',·['peerRankId',·['../structgmx__pme__pp.xhtml#afde76cd2a9bb4a6adbdea033648276de',·1,·'gmx_pme_pp']]],
313 ····['pendinglimit_5f_187',·['pendingLimit_',·['../classgmx_1_1internal_1_1AnalysisDataStorageImpl.xhtml#ae5a3ef651453e7c82201e5ec01a29833',·1,·'gmx::internal::AnalysisDataStorageImpl']]],313 ····['pendinglimit_5f_187',·['pendingLimit_',·['../classgmx_1_1internal_1_1AnalysisDataStorageImpl.xhtml#ae5a3ef651453e7c82201e5ec01a29833',·1,·'gmx::internal::AnalysisDataStorageImpl']]],
314 ····['perform3dfft_188',·['perform3dfft',·['../classgmx_1_1Gpu3dFft_1_1ImplCuFft.xhtml#a56defb889a6f5693721d93572cbad414',·1,·'gmx::Gpu3dFft::ImplCuFft::perform3dFft()'],314 ····['perform3dfft_188',·['perform3dfft',·['../classgmx_1_1Gpu3dFft_1_1ImplCuFft.xhtml#a56defb889a6f5693721d93572cbad414',·1,·'gmx::Gpu3dFft::ImplCuFft::perform3dFft()'],
Offset 370, 41 lines modifiedOffset 370, 41 lines modified
370 ····['pl_5fh2d_221',·['pl_h2d',·['../structNbnxm_1_1GpuTimers_1_1Interaction.xhtml#a8b97404577e7366f1c1ff9171348dde9',·1,·'Nbnxm::GpuTimers::Interaction']]],370 ····['pl_5fh2d_221',·['pl_h2d',·['../structNbnxm_1_1GpuTimers_1_1Interaction.xhtml#a8b97404577e7366f1c1ff9171348dde9',·1,·'Nbnxm::GpuTimers::Interaction']]],
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372 ····['pl_5fh2d_5ft_223',·['pl_h2d_t',·['../structgmx__wallclock__gpu__nbnxn__t.xhtml#a2b87e6ee0f8ea2e0f0e68fe6e2789b47',·1,·'gmx_wallclock_gpu_nbnxn_t']]],372 ····['pl_5fh2d_5ft_223',·['pl_h2d_t',·['../structgmx__wallclock__gpu__nbnxn__t.xhtml#a2b87e6ee0f8ea2e0f0e68fe6e2789b47',·1,·'gmx_wallclock_gpu_nbnxn_t']]],
373 ····['place_5fchild_224',·['place_child',·['../params_8cpp.xhtml#a4f03c9212903cb57ab83f37d1c3b8712',·1,·'params.cpp']]],373 ····['place_5fchild_224',·['place_child',·['../params_8cpp.xhtml#a4f03c9212903cb57ab83f37d1c3b8712',·1,·'params.cpp']]],
374 ····['placecoordinateswithcominbox_225',·['placeCoordinatesWithCOMInBox',·['../namespacegmx.xhtml#a5ec110d97fdb720c33192280332d9800',·1,·'gmx']]],374 ····['placecoordinateswithcominbox_225',·['placeCoordinatesWithCOMInBox',·['../namespacegmx.xhtml#a5ec110d97fdb720c33192280332d9800',·1,·'gmx']]],
375 ····['placeselectionsinrequests_226',·['placeSelectionsInRequests',·['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#ab547898cd88fdd6a7a2341f5686b6eca',·1,·'gmx::SelectionOptionManager::Impl']]],375 ····['placeselectionsinrequests_226',·['placeSelectionsInRequests',·['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#ab547898cd88fdd6a7a2341f5686b6eca',·1,·'gmx::SelectionOptionManager::Impl']]],
376 ····['plainasserthelper_227',·['plainAssertHelper',·['../group__module__testutils.xhtml#gae9b29d32f4bd98d7af90115c230709d4',·1,·'gmx::test']]],376 ····['plainasserthelper_227',·['plainAssertHelper',·['../group__module__testutils.xhtml#gae9b29d32f4bd98d7af90115c230709d4',·1,·'gmx::test']]],
 377 ····['plan_228',·['plan',·['../structgmx__fft__fftw3.xhtml#a0927083cfc3001dcb5e9cac425fdc916',·1,·'gmx_fft_fftw3::plan'],
377 ····['plan_228',·['plan',·['../structgmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03_1_1RocfftPlan.xhtml#ab3504132fccac00edfd2031639561afe',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}::RocfftPlan::plan'],378 ········['../structgmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03_1_1RocfftPlan.xhtml#ab3504132fccac00edfd2031639561afe',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}::RocfftPlan::plan']
378 ········['../structgmx__fft__fftw3.xhtml#a0927083cfc3001dcb5e9cac425fdc916',·1,·'gmx_fft_fftw3::plan'] 
379 ····]],379 ····]],
380 ····['plans_229',·['Acceptance·tests·and·further·plans',·['../page_modularsimulator.xhtml#autotoc_md19',·1,·'']]],380 ····['plans_229',·['Acceptance·tests·and·further·plans',·['../page_modularsimulator.xhtml#autotoc_md19',·1,·'']]],
381 ····['plans_5f_230',·['plans_',·['../classgmx_1_1Gpu3dFft_1_1ImplSyclRocfft_1_1Impl.xhtml#a5c1cd8368ab0e89fd7364b1c891e6304',·1,·'gmx::Gpu3dFft::ImplSyclRocfft::Impl']]],381 ····['plans_5f_230',·['plans_',·['../classgmx_1_1Gpu3dFft_1_1ImplSyclRocfft_1_1Impl.xhtml#a5c1cd8368ab0e89fd7364b1c891e6304',·1,·'gmx::Gpu3dFft::ImplSyclRocfft::Impl']]],
382 ····['plansetupdata_231',·['PlanSetupData',·['../structgmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03_1_1PlanSetupData.xhtml',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]],382 ····['plansetupdata_231',·['PlanSetupData',·['../structgmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03_1_1PlanSetupData.xhtml',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]],
383 ····['please_5fcite_232',·['please_cite',·['../pleasecite_8h.xhtml#a2152200367ce7a5c0e63f2cd3bb79ee0',·1,·'pleasecite.cpp']]],383 ····['please_5fcite_232',·['please_cite',·['../pleasecite_8h.xhtml#a2152200367ce7a5c0e63f2cd3bb79ee0',·1,·'pleasecite.cpp']]],
384 ····['pleasecite_2eh_233',·['pleasecite.h',·['../pleasecite_8h.xhtml',·1,·'']]],384 ····['pleasecite_2eh_233',·['pleasecite.h',·['../pleasecite_8h.xhtml',·1,·'']]],
385 ····['pleasecitegromacs_234',·['pleaseCiteGromacs',·['../pleasecite_8h.xhtml#ad7c5659648be0ae3dbd7fe06a5dd9843',·1,·'pleasecite.cpp']]],385 ····['pleasecitegromacs_234',·['pleaseCiteGromacs',·['../pleasecite_8h.xhtml#ad7c5659648be0ae3dbd7fe06a5dd9843',·1,·'pleasecite.cpp']]],
386 ····['plist_235',·['plist',·['../structNbnxmGpu.xhtml#a8cce839a44b19f84ab4362d943847926',·1,·'NbnxmGpu']]],386 ····['plist_235',·['plist',·['../structNbnxmGpu.xhtml#a8cce839a44b19f84ab4362d943847926',·1,·'NbnxmGpu']]],
387 ····['plot_2ecpp_236',·['plot.cpp',·['../plot_8cpp.xhtml',·1,·'']]],387 ····['plot_2ecpp_236',·['plot.cpp',·['../plot_8cpp.xhtml',·1,·'']]],
388 ····['plot_2eh_237',·['plot.h',·['../plot_8h.xhtml',·1,·'']]],388 ····['plot_2eh_237',·['plot.h',·['../plot_8h.xhtml',·1,·'']]],
389 ····['plotformat_238',·['plotFormat',·['../classgmx_1_1AnalysisDataPlotSettings.xhtml#afa657ab31926f3d88d0dfe53e71ee27e',·1,·'gmx::AnalysisDataPlotSettings']]],389 ····['plotformat_238',·['plotFormat',·['../classgmx_1_1AnalysisDataPlotSettings.xhtml#afa657ab31926f3d88d0dfe53e71ee27e',·1,·'gmx::AnalysisDataPlotSettings']]],
390 ····['plotsettings_239',·['plotsettings',·['../classgmx_1_1TrajectoryAnalysisSettings.xhtml#a336511e561f81cbeed1a7c631308fbaa',·1,·'gmx::TrajectoryAnalysisSettings::plotSettings()'], 
391 ········['../classgmx_1_1TrajectoryAnalysisSettings_1_1Impl.xhtml#ad499ce3ea630e21be1645fd314c5977e',·1,·'gmx::TrajectoryAnalysisSettings::Impl::plotSettings']390 ····['plotsettings_239',·['plotsettings',·['../classgmx_1_1TrajectoryAnalysisSettings_1_1Impl.xhtml#ad499ce3ea630e21be1645fd314c5977e',·1,·'gmx::TrajectoryAnalysisSettings::Impl::plotSettings'],
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392 ····]],392 ····]],
393 ····['pmalloc_240',·['pmalloc',·['../pmalloc_8cpp.xhtml#ae10570df1df68fca44040ee4a3d1a95a',·1,·'pmalloc(void·**h_ptr,·size_t·nbytes,·const·DeviceContext·*):&#160;pmalloc.cpp'],393 ····['pmalloc_240',·['pmalloc',·['../pmalloc_8cpp.xhtml#ae10570df1df68fca44040ee4a3d1a95a',·1,·'pmalloc(void·**h_ptr,·size_t·nbytes,·const·DeviceContext·*):&#160;pmalloc.cpp'],
394 ········['../pmalloc__sycl_8cpp.xhtml#a3600a3a1589d7849f5b2f5ee1b54a017',·1,·'pmalloc(void·**h_ptr,·size_t·nbytes,·const·DeviceContext·*deviceContext):&#160;pmalloc_sycl.cpp']394 ········['../pmalloc__sycl_8cpp.xhtml#a3600a3a1589d7849f5b2f5ee1b54a017',·1,·'pmalloc(void·**h_ptr,·size_t·nbytes,·const·DeviceContext·*deviceContext):&#160;pmalloc_sycl.cpp']
395 ····]],395 ····]],
396 ····['pmalloc_2ecpp_241',·['pmalloc.cpp',·['../pmalloc_8cpp.xhtml',·1,·'']]],396 ····['pmalloc_2ecpp_241',·['pmalloc.cpp',·['../pmalloc_8cpp.xhtml',·1,·'']]],
397 ····['pmalloc_2eh_242',·['pmalloc.h',·['../pmalloc_8h.xhtml',·1,·'']]],397 ····['pmalloc_2eh_242',·['pmalloc.h',·['../pmalloc_8h.xhtml',·1,·'']]],
398 ····['pmalloc_5fsycl_2ecpp_243',·['pmalloc_sycl.cpp',·['../pmalloc__sycl_8cpp.xhtml',·1,·'']]],398 ····['pmalloc_5fsycl_2ecpp_243',·['pmalloc_sycl.cpp',·['../pmalloc__sycl_8cpp.xhtml',·1,·'']]],
399 ····['pme_244',·['pme',·['../namespacegmx.xhtml#a90e1f148d98685136b343e0a20d3c2e5a4792b2e853b980eb284e82db5ad5f4d5',·1,·'gmx::Pme'],399 ····['pme_244',·['pme',·['../namespacegmx.xhtml#a90e1f148d98685136b343e0a20d3c2e5a4792b2e853b980eb284e82db5ad5f4d5',·1,·'gmx::Pme'],
400 ········['../namespacegmx.xhtml#a6efc2e8f104eb3699bc82c2b8984cedba4792b2e853b980eb284e82db5ad5f4d5',·1,·'gmx::Pme']400 ········['../namespacegmx.xhtml#a6efc2e8f104eb3699bc82c2b8984cedba4792b2e853b980eb284e82db5ad5f4d5',·1,·'gmx::Pme']
401 ····]],401 ····]],
402 ····['pme_2ecpp_245',·['pme.cpp',·['../tests_2pme_8cpp.xhtml',·1,·'(Global·Namespace)'],402 ····['pme_2ecpp_245',·['pme.cpp',·['../pme_8cpp.xhtml',·1,·'(Global·Namespace)'],
403 ········['../pme_8cpp.xhtml',·1,·'(Global·Namespace)']403 ········['../tests_2pme_8cpp.xhtml',·1,·'(Global·Namespace)']
404 ····]],404 ····]],
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406 ····['pme_5fcalc_5fpidx_247',·['pme_calc_pidx',·['../pme__redistribute_8cpp.xhtml#a7ecc9aef79380a045871dc5e00190695',·1,·'pme_redistribute.cpp']]],406 ····['pme_5fcalc_5fpidx_247',·['pme_calc_pidx',·['../pme__redistribute_8cpp.xhtml#a7ecc9aef79380a045871dc5e00190695',·1,·'pme_redistribute.cpp']]],
407 ····['pme_5fcalc_5fpidx_5fwrapper_248',·['pme_calc_pidx_wrapper',·['../pme__redistribute_8cpp.xhtml#a91aacccf9c8906e7a5d4e26131820302',·1,·'pme_redistribute.cpp']]],407 ····['pme_5fcalc_5fpidx_5fwrapper_248',·['pme_calc_pidx_wrapper',·['../pme__redistribute_8cpp.xhtml#a91aacccf9c8906e7a5d4e26131820302',·1,·'pme_redistribute.cpp']]],
408 ····['pme_5fcoordinate_5freceiver_5fgpu_2eh_249',·['pme_coordinate_receiver_gpu.h',·['../pme__coordinate__receiver__gpu_8h.xhtml',·1,·'']]],408 ····['pme_5fcoordinate_5freceiver_5fgpu_2eh_249',·['pme_coordinate_receiver_gpu.h',·['../pme__coordinate__receiver__gpu_8h.xhtml',·1,·'']]],
409 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2ecpp_250',·['pme_coordinate_receiver_gpu_impl.cpp',·['../pme__coordinate__receiver__gpu__impl_8cpp.xhtml',·1,·'']]],409 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2ecpp_250',·['pme_coordinate_receiver_gpu_impl.cpp',·['../pme__coordinate__receiver__gpu__impl_8cpp.xhtml',·1,·'']]],
410 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2eh_251',·['pme_coordinate_receiver_gpu_impl.h',·['../pme__coordinate__receiver__gpu__impl_8h.xhtml',·1,·'']]],410 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2eh_251',·['pme_coordinate_receiver_gpu_impl.h',·['../pme__coordinate__receiver__gpu__impl_8h.xhtml',·1,·'']]],
Offset 417, 86 lines modifiedOffset 417, 86 lines modified
417 ····['pme_5fforce_5fsender_5fgpu_5fimpl_5fgpu_5fsycl_2ecpp_258',·['pme_force_sender_gpu_impl_gpu_sycl.cpp',·['../pme__force__sender__gpu__impl__gpu__sycl_8cpp.xhtml',·1,·'']]],417 ····['pme_5fforce_5fsender_5fgpu_5fimpl_5fgpu_5fsycl_2ecpp_258',·['pme_force_sender_gpu_impl_gpu_sycl.cpp',·['../pme__force__sender__gpu__impl__gpu__sycl_8cpp.xhtml',·1,·'']]],
418 ····['pme_5fgather_5fsycl_2ecpp_259',·['pme_gather_sycl.cpp',·['../pme__gather__sycl_8cpp.xhtml',·1,·'']]],418 ····['pme_5fgather_5fsycl_2ecpp_259',·['pme_gather_sycl.cpp',·['../pme__gather__sycl_8cpp.xhtml',·1,·'']]],
419 ····['pme_5fgather_5fsycl_2eh_260',·['pme_gather_sycl.h',·['../pme__gather__sycl_8h.xhtml',·1,·'']]],419 ····['pme_5fgather_5fsycl_2eh_260',·['pme_gather_sycl.h',·['../pme__gather__sycl_8h.xhtml',·1,·'']]],
420 ····['pme_5fget_5fpinning_5fpolicy_261',·['pme_get_pinning_policy',·['../pme_8h.xhtml#ace2ad200713ffbae9c71d92d92a83d6f',·1,·'pme_get_pinning_policy():&#160;pme.cpp'],420 ····['pme_5fget_5fpinning_5fpolicy_261',·['pme_get_pinning_policy',·['../pme_8h.xhtml#ace2ad200713ffbae9c71d92d92a83d6f',·1,·'pme_get_pinning_policy():&#160;pme.cpp'],
421 ········['../pme_8cpp.xhtml#ace2ad200713ffbae9c71d92d92a83d6f',·1,·'pme_get_pinning_policy():&#160;pme.cpp']421 ········['../pme_8cpp.xhtml#ace2ad200713ffbae9c71d92d92a83d6f',·1,·'pme_get_pinning_policy():&#160;pme.cpp']
422 ····]],422 ····]],
423 ····['pme_5fgpu_2ecpp_262',·['pme_gpu.cpp',·['../pme__gpu_8cpp.xhtml',·1,·'']]],423 ····['pme_5fgpu_2ecpp_262',·['pme_gpu.cpp',·['../pme__gpu_8cpp.xhtml',·1,·'']]],
 424 ····['pme_5fgpu_5f3dfft_263',·['pme_gpu_3dfft',·['../pme__gpu__internal_8h.xhtml#a63b83c7907c118ec820a554d4d1e9968',·1,·'pme_gpu_3dfft(const·PmeGpu·*pmeGpu,·enum·gmx_fft_direction·direction,·int·gridIndex=0):&#160;pme_gpu_internal.cpp'],
424 ····['pme_5fgpu_5f3dfft_263',·['pme_gpu_3dfft',·['../pme__gpu__internal_8cpp.xhtml#a903364732f9d5fe033039714e4aef8dc',·1,·'pme_gpu_3dfft(const·PmeGpu·*pmeGpu,·gmx_fft_direction·dir,·const·int·grid_index):&#160;pme_gpu_internal.cpp'],425 ········['../pme__gpu__internal_8cpp.xhtml#a903364732f9d5fe033039714e4aef8dc',·1,·'pme_gpu_3dfft(const·PmeGpu·*pmeGpu,·gmx_fft_direction·dir,·const·int·grid_index):&#160;pme_gpu_internal.cpp']
425 ········['../pme__gpu__internal_8h.xhtml#a63b83c7907c118ec820a554d4d1e9968',·1,·'pme_gpu_3dfft(const·PmeGpu·*pmeGpu,·enum·gmx_fft_direction·direction,·int·gridIndex=0):&#160;pme_gpu_internal.cpp'] 
426 ····]],426 ····]],
427 ····['pme_5fgpu_5factive_264',·['pme_gpu_active',·['../pme__gpu_8cpp.xhtml#a06b866a69f90c5f4b92716d25944e480',·1,·'pme_gpu.cpp']]],427 ····['pme_5fgpu_5factive_264',·['pme_gpu_active',·['../pme__gpu_8cpp.xhtml#a06b866a69f90c5f4b92716d25944e480',·1,·'pme_gpu.cpp']]],
428 ····['pme_5fgpu_5falloc_5fenergy_5fvirial_265',·['pme_gpu_alloc_energy_virial',·['../pme__gpu__internal_8h.xhtml#a6857d534c4c31a5f768838378c691464',·1,·'pme_gpu_alloc_energy_virial(PmeGpu·*pmeGpu):&#160;pme_gpu_internal.cpp'],428 ····['pme_5fgpu_5falloc_5fenergy_5fvirial_265',·['pme_gpu_alloc_energy_virial',·['../pme__gpu__internal_8h.xhtml#a6857d534c4c31a5f768838378c691464',·1,·'pme_gpu_alloc_energy_virial(PmeGpu·*pmeGpu):&#160;pme_gpu_internal.cpp'],
429 ········['../pme__gpu__internal_8cpp.xhtml#a6857d534c4c31a5f768838378c691464',·1,·'pme_gpu_alloc_energy_virial(PmeGpu·*pmeGpu):&#160;pme_gpu_internal.cpp']429 ········['../pme__gpu__internal_8cpp.xhtml#a6857d534c4c31a5f768838378c691464',·1,·'pme_gpu_alloc_energy_virial(PmeGpu·*pmeGpu):&#160;pme_gpu_internal.cpp']
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14 ····['qminput_5f_8',·['qmInput_',·['../structgmx_1_1QMMMParameters.xhtml#a7674a3c259e4898d8aa6318e84bc6e30',·1,·'gmx::QMMMParameters']]],14 ····['qminput_5f_8',·['qmInput_',·['../structgmx_1_1QMMMParameters.xhtml#a7674a3c259e4898d8aa6318e84bc6e30',·1,·'gmx::QMMMParameters']]],
15 ····['qminputfilename_9',·['QMInputFileName',·['../structgmx_1_1QMInputFileName.xhtml',·1,·'gmx']]],15 ····['qminputfilename_9',·['QMInputFileName',·['../structgmx_1_1QMInputFileName.xhtml',·1,·'gmx']]],
16 ····['qminputfilename_5f_10',·['qmInputFileName_',·['../structgmx_1_1QMInputFileName.xhtml#a9ac3efe1c20d50610639261468b53431',·1,·'gmx::QMInputFileName']]],16 ····['qminputfilename_5f_10',·['qmInputFileName_',·['../structgmx_1_1QMInputFileName.xhtml#a9ac3efe1c20d50610639261468b53431',·1,·'gmx::QMInputFileName']]],
17 ····['qmmethod_5f_11',·['qmMethod_',·['../structgmx_1_1QMMMParameters.xhtml#a7fda0bb8e38552a5c15354eadf9c23ac',·1,·'gmx::QMMMParameters']]],17 ····['qmmethod_5f_11',·['qmMethod_',·['../structgmx_1_1QMMMParameters.xhtml#a7fda0bb8e38552a5c15354eadf9c23ac',·1,·'gmx::QMMMParameters']]],
18 ····['qmmm_12',·['qmmm',·['../classgmx_1_1anonymous__namespace_02qmmm_8cpp_03_1_1QMMM.xhtml',·1,·'gmx::anonymous_namespace{qmmm.cpp}::QMMM'],18 ····['qmmm_12',·['qmmm',·['../classgmx_1_1anonymous__namespace_02qmmm_8cpp_03_1_1QMMM.xhtml',·1,·'gmx::anonymous_namespace{qmmm.cpp}::QMMM'],
19 ········['../classgmx_1_1anonymous__namespace_02qmmm_8cpp_03_1_1QMMM.xhtml#ac2fa5d36187e29b84a608477b6f2777c',·1,·'gmx::anonymous_namespace{qmmm.cpp}::QMMM::QMMM()']19 ········['../classgmx_1_1anonymous__namespace_02qmmm_8cpp_03_1_1QMMM.xhtml#ac2fa5d36187e29b84a608477b6f2777c',·1,·'gmx::anonymous_namespace{qmmm.cpp}::QMMM::QMMM()']
20 ····]],20 ····]],
21 ····['qmmm_2ecpp_13',·['qmmm.cpp',·['../qmmm_8cpp.xhtml',·1,·'(Global·Namespace)'],21 ····['qmmm_2ecpp_13',·['qmmm.cpp',·['../tests_2qmmm_8cpp.xhtml',·1,·'(Global·Namespace)'],
22 ········['../tests_2qmmm_8cpp.xhtml',·1,·'(Global·Namespace)']22 ········['../qmmm_8cpp.xhtml',·1,·'(Global·Namespace)']
23 ····]],23 ····]],
24 ····['qmmm_2eh_14',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],24 ····['qmmm_2eh_14',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],
25 ····['qmmmforceprovider_15',·['QMMMForceProvider',·['../classgmx_1_1QMMMForceProvider.xhtml',·1,·'gmx']]],25 ····['qmmmforceprovider_15',·['QMMMForceProvider',·['../classgmx_1_1QMMMForceProvider.xhtml',·1,·'gmx']]],
26 ····['qmmmforceprovider_2ecpp_16',·['qmmmforceprovider.cpp',·['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],26 ····['qmmmforceprovider_2ecpp_16',·['qmmmforceprovider.cpp',·['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
27 ········['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']27 ········['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
28 ····]],28 ····]],
29 ····['qmmmforceprovider_2eh_17',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],29 ····['qmmmforceprovider_2eh_17',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],
30 ····['qmmmforceprovider_5fstub_2ecpp_18',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],30 ····['qmmmforceprovider_5fstub_2ecpp_18',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],
31 ····['qmmminputgenerator_19',·['qmmminputgenerator',·['../classgmx_1_1QMMMInputGenerator.xhtml#aa0847e6ee608ea7444b36c9db6e0bdd6',·1,·'gmx::QMMMInputGenerator::QMMMInputGenerator()'],31 ····['qmmminputgenerator_19',·['qmmminputgenerator',·['../classgmx_1_1QMMMInputGenerator.xhtml#aa0847e6ee608ea7444b36c9db6e0bdd6',·1,·'gmx::QMMMInputGenerator::QMMMInputGenerator()'],
32 ········['../classgmx_1_1QMMMInputGenerator.xhtml',·1,·'gmx::QMMMInputGenerator']32 ········['../classgmx_1_1QMMMInputGenerator.xhtml',·1,·'gmx::QMMMInputGenerator']
33 ····]],33 ····]],
34 ····['qmmminputgenerator_2ecpp_20',·['qmmminputgenerator.cpp',·['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['qmmminputgenerator_2ecpp_20',·['qmmminputgenerator.cpp',·['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']
36 ····]],36 ····]],
37 ····['qmmminputgenerator_2eh_21',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],37 ····['qmmminputgenerator_2eh_21',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],
38 ····['qmmmmdptransformfromstring_22',·['QMMMMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02qmmmoptions_8cpp_03.xhtml#a704afcf71de3ae29cf3c3a260c8e8e0c',·1,·'gmx::anonymous_namespace{qmmmoptions.cpp}']]],38 ····['qmmmmdptransformfromstring_22',·['QMMMMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02qmmmoptions_8cpp_03.xhtml#a704afcf71de3ae29cf3c3a260c8e8e0c',·1,·'gmx::anonymous_namespace{qmmmoptions.cpp}']]],
39 ····['qmmmmoduleinfo_23',·['QMMMModuleInfo',·['../structgmx_1_1QMMMModuleInfo.xhtml',·1,·'gmx']]],39 ····['qmmmmoduleinfo_23',·['QMMMModuleInfo',·['../structgmx_1_1QMMMModuleInfo.xhtml',·1,·'gmx']]],
40 ····['qmmmoptions_24',·['QMMMOptions',·['../classgmx_1_1QMMMOptions.xhtml',·1,·'gmx']]],40 ····['qmmmoptions_24',·['QMMMOptions',·['../classgmx_1_1QMMMOptions.xhtml',·1,·'gmx']]],
41 ····['qmmmoptions_2ecpp_25',·['qmmmoptions.cpp',·['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],41 ····['qmmmoptions_2ecpp_25',·['qmmmoptions.cpp',·['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
42 ········['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']42 ········['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
Offset 48, 16 lines modifiedOffset 48, 16 lines modified
48 ····]],48 ····]],
49 ····['qmmmqmmethod_29',·['QMMMQMMethod',·['../namespacegmx.xhtml#ae35b2c8b377f35030a2b9dfb697e2ea3',·1,·'gmx']]],49 ····['qmmmqmmethod_29',·['QMMMQMMethod',·['../namespacegmx.xhtml#ae35b2c8b377f35030a2b9dfb697e2ea3',·1,·'gmx']]],
50 ····['qmmmsimulationparametersetup_30',·['QMMMSimulationParameterSetup',·['../classgmx_1_1anonymous__namespace_02qmmm_8cpp_03_1_1QMMMSimulationParameterSetup.xhtml',·1,·'gmx::anonymous_namespace{qmmm.cpp}']]],50 ····['qmmmsimulationparametersetup_30',·['QMMMSimulationParameterSetup',·['../classgmx_1_1anonymous__namespace_02qmmm_8cpp_03_1_1QMMMSimulationParameterSetup.xhtml',·1,·'gmx::anonymous_namespace{qmmm.cpp}']]],
51 ····['qmmmtopologyinfo_31',·['QMMMTopologyInfo',·['../structgmx_1_1QMMMTopologyInfo.xhtml',·1,·'gmx']]],51 ····['qmmmtopologyinfo_31',·['QMMMTopologyInfo',·['../structgmx_1_1QMMMTopologyInfo.xhtml',·1,·'gmx']]],
52 ····['qmmmtopologypreprocessor_32',·['qmmmtopologypreprocessor',·['../classgmx_1_1QMMMTopologyPreprocessor.xhtml',·1,·'gmx::QMMMTopologyPreprocessor'],52 ····['qmmmtopologypreprocessor_32',·['qmmmtopologypreprocessor',·['../classgmx_1_1QMMMTopologyPreprocessor.xhtml',·1,·'gmx::QMMMTopologyPreprocessor'],
53 ········['../classgmx_1_1QMMMTopologyPreprocessor.xhtml#a9cbf3dfe9cc1e591acdb6bf5723d54a8',·1,·'gmx::QMMMTopologyPreprocessor::QMMMTopologyPreprocessor()']53 ········['../classgmx_1_1QMMMTopologyPreprocessor.xhtml#a9cbf3dfe9cc1e591acdb6bf5723d54a8',·1,·'gmx::QMMMTopologyPreprocessor::QMMMTopologyPreprocessor()']
54 ····]],54 ····]],
55 ····['qmmmtopologypreprocessor_2ecpp_33',·['qmmmtopologypreprocessor.cpp',·['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],55 ····['qmmmtopologypreprocessor_2ecpp_33',·['qmmmtopologypreprocessor.cpp',·['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
56 ········['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']56 ········['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
57 ····]],57 ····]],
58 ····['qmmmtopologypreprocessor_2eh_34',·['qmmmtopologypreprocessor.h',·['../qmmmtopologypreprocessor_8h.xhtml',·1,·'']]],58 ····['qmmmtopologypreprocessor_2eh_34',·['qmmmtopologypreprocessor.h',·['../qmmmtopologypreprocessor_8h.xhtml',·1,·'']]],
59 ····['qmmmtypes_2eh_35',·['qmmmtypes.h',·['../qmmmtypes_8h.xhtml',·1,·'']]],59 ····['qmmmtypes_2eh_35',·['qmmmtypes.h',·['../qmmmtypes_8h.xhtml',·1,·'']]],
60 ····['qmmultiplicity_5f_36',·['qmMultiplicity_',·['../structgmx_1_1QMMMParameters.xhtml#a7a6462874d94f1796438498baf316205',·1,·'gmx::QMMMParameters']]],60 ····['qmmultiplicity_5f_36',·['qmMultiplicity_',·['../structgmx_1_1QMMMParameters.xhtml#a7a6462874d94f1796438498baf316205',·1,·'gmx::QMMMParameters']]],
61 ····['qmpdb_5f_37',·['qmPdb_',·['../structgmx_1_1QMMMParameters.xhtml#aa744e90d045c43378c79f232ad5569df',·1,·'gmx::QMMMParameters']]],61 ····['qmpdb_5f_37',·['qmPdb_',·['../structgmx_1_1QMMMParameters.xhtml#aa744e90d045c43378c79f232ad5569df',·1,·'gmx::QMMMParameters']]],
62 ····['qmtrans_38',·['qmTrans',·['../classgmx_1_1QMMMInputGenerator.xhtml#afe2a5eef7dcb5e0bb01b2cf091fb54b7',·1,·'gmx::QMMMInputGenerator']]],62 ····['qmtrans_38',·['qmTrans',·['../classgmx_1_1QMMMInputGenerator.xhtml#afe2a5eef7dcb5e0bb01b2cf091fb54b7',·1,·'gmx::QMMMInputGenerator']]],
63 ····['qmtrans_5f_39',·['qmTrans_',·['../structgmx_1_1QMMMParameters.xhtml#a8e2f8f012ba8f6d14a7acc0a6e7fa12a',·1,·'gmx::QMMMParameters']]],63 ····['qmtrans_5f_39',·['qmTrans_',·['../structgmx_1_1QMMMParameters.xhtml#a8e2f8f012ba8f6d14a7acc0a6e7fa12a',·1,·'gmx::QMMMParameters']]],
53.8 KB
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Offset 1, 14 lines modifiedOffset 1, 14 lines modified
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2 ····['r_0',·['r',·['../structt__pargs.xhtml#a90a5c0ca62506725a9e95ec84b5efc6e',·1,·'t_pargs::r'], 
3 ········['../classgmx_1_1SelectionParserValue.xhtml#a9ce3f667ffb18ed4f8fc36e008bcae73',·1,·'gmx::SelectionParserValue::r'], 
4 ········['../structgmx__ana__selvalue__t.xhtml#afdab2e1a8e6d0b4157f0d823f063020a',·1,·'gmx_ana_selvalue_t::r'], 
5 ········['../structt__compare__value.xhtml#a1b111721fc44d7a544610d3ba0ce0ee2',·1,·'t_compare_value::r'], 
6 ········['../structt__methoddata__kwint.xhtml#aa39284c271e999c60ab7a551dfa24345',·1,·'t_methoddata_kwint::r'],3 ········['../structt__methoddata__kwint.xhtml#aa39284c271e999c60ab7a551dfa24345',·1,·'t_methoddata_kwint::r'],
7 ········['../structt__methoddata__kwreal.xhtml#a706e2e3fed6d01d17526f5048cff8b2c',·1,·'t_methoddata_kwreal::r']4 ········['../structt__compare__value.xhtml#a1b111721fc44d7a544610d3ba0ce0ee2',·1,·'t_compare_value::r'],
 5 ········['../structgmx__ana__selvalue__t.xhtml#afdab2e1a8e6d0b4157f0d823f063020a',·1,·'gmx_ana_selvalue_t::r'],
 6 ········['../structt__pargs.xhtml#a90a5c0ca62506725a9e95ec84b5efc6e',·1,·'t_pargs::r'],
 7 ········['../classgmx_1_1SelectionParserValue.xhtml#a9ce3f667ffb18ed4f8fc36e008bcae73',·1,·'gmx::SelectionParserValue::r']
8 ····]],8 ····]],
9 ····['r1_1',·['r1',·['../classgmx_1_1SelectionParserValue.xhtml#a12b45dd041bcabf54199a7328f2b2f5e',·1,·'gmx::SelectionParserValue']]],9 ····['r1_1',·['r1',·['../classgmx_1_1SelectionParserValue.xhtml#a12b45dd041bcabf54199a7328f2b2f5e',·1,·'gmx::SelectionParserValue']]],
10 ····['r2_2',·['r2',·['../classgmx_1_1SelectionParserValue.xhtml#abf6992460ae77085e9fe7b5cbffe875f',·1,·'gmx::SelectionParserValue']]],10 ····['r2_2',·['r2',·['../classgmx_1_1SelectionParserValue.xhtml#abf6992460ae77085e9fe7b5cbffe875f',·1,·'gmx::SelectionParserValue']]],
11 ····['r2f_5fd_3',·['R2F_D',·['../namespaceNbnxm.xhtml#abb3176f8f7161562314a884cf5b24d51',·1,·'Nbnxm']]],11 ····['r2f_5fd_3',·['R2F_D',·['../namespaceNbnxm.xhtml#abb3176f8f7161562314a884cf5b24d51',·1,·'Nbnxm']]],
12 ····['r2f_5fu_4',·['R2F_U',·['../namespaceNbnxm.xhtml#a3aea3cfb77656f9580dec0f18aae70a0',·1,·'Nbnxm']]],12 ····['r2f_5fu_4',·['R2F_U',·['../namespaceNbnxm.xhtml#a3aea3cfb77656f9580dec0f18aae70a0',·1,·'Nbnxm']]],
13 ····['r2xmm_5',·['r2xMM',·['../nbnxm__simd_8h.xhtml#af4b5bb6df4ee3851f0ee912728888c84a57db5822182abd070a0cb1e0c044f8d3',·1,·'nbnxm_simd.h']]],13 ····['r2xmm_5',·['r2xMM',·['../nbnxm__simd_8h.xhtml#af4b5bb6df4ee3851f0ee912728888c84a57db5822182abd070a0cb1e0c044f8d3',·1,·'nbnxm_simd.h']]],
14 ····['r4xm_6',·['r4xM',·['../nbnxm__simd_8h.xhtml#af4b5bb6df4ee3851f0ee912728888c84a31bf763775b4a352a2b2a71609bf461f',·1,·'nbnxm_simd.h']]],14 ····['r4xm_6',·['r4xM',·['../nbnxm__simd_8h.xhtml#af4b5bb6df4ee3851f0ee912728888c84a31bf763775b4a352a2b2a71609bf461f',·1,·'nbnxm_simd.h']]],
Offset 19, 18 lines modifiedOffset 19, 18 lines modified
19 ····['radius_11',·['radius',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__eigvec.xhtml#a1e1a8ed060b36ec79f0b80791ab92cf8',·1,·'anonymous_namespace{edsam.cpp}::t_eigvec']]],19 ····['radius_11',·['radius',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__eigvec.xhtml#a1e1a8ed060b36ec79f0b80791ab92cf8',·1,·'anonymous_namespace{edsam.cpp}::t_eigvec']]],
20 ····['raiseassert_12',·['raiseAssert',·['../namespaceanonymous__namespace_02keyvaluetreeserializer_8cpp_03.xhtml#a0cd2647a22a81387c0f5e52af1ad3e5d',·1,·'anonymous_namespace{keyvaluetreeserializer.cpp}']]],20 ····['raiseassert_12',·['raiseAssert',·['../namespaceanonymous__namespace_02keyvaluetreeserializer_8cpp_03.xhtml#a0cd2647a22a81387c0f5e52af1ad3e5d',·1,·'anonymous_namespace{keyvaluetreeserializer.cpp}']]],
21 ····['rand_5fgaussian_13',·['rand_gaussian',·['../classgmx_1_1ColvarProxyGromacs.xhtml#a3c80a4ed10ddf3d0973d30ae36ef5959',·1,·'gmx::ColvarProxyGromacs']]],21 ····['rand_5fgaussian_13',·['rand_gaussian',·['../classgmx_1_1ColvarProxyGromacs.xhtml#a3c80a4ed10ddf3d0973d30ae36ef5959',·1,·'gmx::ColvarProxyGromacs']]],
22 ····['random_20engines_20and_20distributions_20random_14',·['Random·engines·and·distributions·(random)',·['../group__module__random.xhtml',·1,·'']]],22 ····['random_20engines_20and_20distributions_20random_14',·['Random·engines·and·distributions·(random)',·['../group__module__random.xhtml',·1,·'']]],
23 ····['randomdevice_15',·['RandomDevice',·['../namespacegmx.xhtml#aac44e2bbcc40f48812b6b756a503ea51',·1,·'gmx']]],23 ····['randomdevice_15',·['RandomDevice',·['../namespacegmx.xhtml#aac44e2bbcc40f48812b6b756a503ea51',·1,·'gmx']]],
24 ····['randomdomain_16',·['RandomDomain',·['../namespacegmx.xhtml#a73202d646d57bcc963d8afd5a16015f0',·1,·'gmx']]],24 ····['randomdomain_16',·['RandomDomain',·['../namespacegmx.xhtml#a73202d646d57bcc963d8afd5a16015f0',·1,·'gmx']]],
25 ····['randomseed_17',·['randomSeed',·['../structReplicaExchangeParameters.xhtml#a56dd51bce5fdf8d0f6dc7263995f3852',·1,·'ReplicaExchangeParameters']]],25 ····['randomseed_17',·['randomSeed',·['../structReplicaExchangeParameters.xhtml#a56dd51bce5fdf8d0f6dc7263995f3852',·1,·'ReplicaExchangeParameters']]],
26 ····['range_18',·['range',·['../classgmx_1_1Range.xhtml#afb1032527bec55cb71b19d953d9bd952',·1,·'gmx::Range::Range()'], 
27 ········['../classgmx_1_1Range.xhtml',·1,·'gmx::Range&lt;·T·&gt;'],26 ····['range_18',·['range',·['../classgmx_1_1Range.xhtml',·1,·'gmx::Range&lt;·T·&gt;'],
 27 ········['../classgmx_1_1Range.xhtml#afb1032527bec55cb71b19d953d9bd952',·1,·'gmx::Range::Range(const·T·begin,·const·T·end)'],
 28 ········['../classgmx_1_1Range.xhtml#ae9b28db691f32f023a7698d86af23bfe',·1,·'gmx::Range::Range()=default'],
28 ········['../classgmx_1_1AnalysisHistogramSettingsInitializer.xhtml#ab245cc452d9a92f828058b322260c738',·1,·'gmx::AnalysisHistogramSettingsInitializer::range()'],29 ········['../classgmx_1_1AnalysisHistogramSettingsInitializer.xhtml#ab245cc452d9a92f828058b322260c738',·1,·'gmx::AnalysisHistogramSettingsInitializer::range()']
29 ········['../classgmx_1_1Range.xhtml#ae9b28db691f32f023a7698d86af23bfe',·1,·'gmx::Range::Range()'] 
30 ····]],30 ····]],
31 ····['range_20non_20bonded_20interaction_20module_19',·['Short-range·non-bonded·interaction·module',·['../group______module__nbnxm.xhtml',·1,·'']]],31 ····['range_20non_20bonded_20interaction_20module_19',·['Short-range·non-bonded·interaction·module',·['../group______module__nbnxm.xhtml',·1,·'']]],
32 ····['range_2ecpp_20',·['range.cpp',·['../range_8cpp.xhtml',·1,·'']]],32 ····['range_2ecpp_20',·['range.cpp',·['../range_8cpp.xhtml',·1,·'']]],
33 ····['range_2eh_21',·['range.h',·['../range_8h.xhtml',·1,·'']]],33 ····['range_2eh_21',·['range.h',·['../range_8h.xhtml',·1,·'']]],
34 ····['range_3c_20int_20_3e_22',·['Range&lt;·int·&gt;',·['../classgmx_1_1Range.xhtml',·1,·'gmx']]],34 ····['range_3c_20int_20_3e_22',·['Range&lt;·int·&gt;',·['../classgmx_1_1Range.xhtml',·1,·'gmx']]],
35 ····['range_5fcheck_23',·['range_check',·['../fatalerror_8h.xhtml#aa6ee0d4697fffc7500ba038e45b7a52b',·1,·'fatalerror.h']]],35 ····['range_5fcheck_23',·['range_check',·['../fatalerror_8h.xhtml#aa6ee0d4697fffc7500ba038e45b7a52b',·1,·'fatalerror.h']]],
36 ····['range_5fcheck_5ffunction_24',·['range_check_function',·['../fatalerror_8h.xhtml#a955260829b0c4edebc828407521ab926',·1,·'fatalerror.cpp']]],36 ····['range_5fcheck_5ffunction_24',·['range_check_function',·['../fatalerror_8h.xhtml#a955260829b0c4edebc828407521ab926',·1,·'fatalerror.cpp']]],
Offset 40, 49 lines modifiedOffset 40, 49 lines modified
40 ····['rangeend_28',·['rangeEnd',·['../structgmx_1_1VsiteThread.xhtml#a72938a839a2c0d118f6797e2a43250f4',·1,·'gmx::VsiteThread']]],40 ····['rangeend_28',·['rangeEnd',·['../structgmx_1_1VsiteThread.xhtml#a72938a839a2c0d118f6797e2a43250f4',·1,·'gmx::VsiteThread']]],
41 ····['rangeendwithinlattice_29',·['rangeEndWithinLattice',·['../namespacegmx_1_1anonymous__namespace_02gausstransform_8cpp_03.xhtml#a243e048e17f19acbe3bb8abd70a46e21',·1,·'gmx::anonymous_namespace{gausstransform.cpp}']]],41 ····['rangeendwithinlattice_29',·['rangeEndWithinLattice',·['../namespacegmx_1_1anonymous__namespace_02gausstransform_8cpp_03.xhtml#a243e048e17f19acbe3bb8abd70a46e21',·1,·'gmx::anonymous_namespace{gausstransform.cpp}']]],
42 ····['rangeerror_30',·['rangeerror',·['../classgmx_1_1RangeError.xhtml',·1,·'gmx::RangeError'],42 ····['rangeerror_30',·['rangeerror',·['../classgmx_1_1RangeError.xhtml',·1,·'gmx::RangeError'],
43 ········['../classgmx_1_1RangeError.xhtml#a269b00f74ffc0e283c52e93a637fe15b',·1,·'gmx::RangeError::RangeError()']43 ········['../classgmx_1_1RangeError.xhtml#a269b00f74ffc0e283c52e93a637fe15b',·1,·'gmx::RangeError::RangeError()']
44 ····]],44 ····]],
45 ····['rangepartitioning_31',·['RangePartitioning',·['../classgmx_1_1RangePartitioning.xhtml',·1,·'gmx']]],45 ····['rangepartitioning_31',·['RangePartitioning',·['../classgmx_1_1RangePartitioning.xhtml',·1,·'gmx']]],
46 ····['rangestart_32',·['rangeStart',·['../structgmx_1_1VsiteThread.xhtml#a54836c843926924a9d7aeef4eb67c3b6',·1,·'gmx::VsiteThread']]],46 ····['rangestart_32',·['rangeStart',·['../structgmx_1_1VsiteThread.xhtml#a54836c843926924a9d7aeef4eb67c3b6',·1,·'gmx::VsiteThread']]],
 47 ····['rank_33',·['rank',·['../classgmx_1_1extents.xhtml#a820b91d5723b436e2fe4e945b1567cd8',·1,·'gmx::extents::rank()'],
47 ····['rank_33',·['rank',·['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a9119b00490d88491ca8aca3f2756eb68',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::rank()'],48 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a9119b00490d88491ca8aca3f2756eb68',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::rank()'],
48 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#a8539e7c8fed5b899da201ec934e64b09',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::rank()'],49 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#a8539e7c8fed5b899da201ec934e64b09',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::rank()'],
49 ········['../structgmx_1_1detail_1_1extents__analyse_3_010_01_4.xhtml#aa2ca0283067694f1eee0d0981d638830',·1,·'gmx::detail::extents_analyse&lt;·0·&gt;::rank()'],50 ········['../structgmx_1_1detail_1_1extents__analyse_3_010_01_4.xhtml#aa2ca0283067694f1eee0d0981d638830',·1,·'gmx::detail::extents_analyse&lt;·0·&gt;::rank()'],
50 ········['../classgmx_1_1extents.xhtml#a820b91d5723b436e2fe4e945b1567cd8',·1,·'gmx::extents::rank()'], 
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54 ········['../classgmx_1_1PhysicalNodeCommunicator.xhtml#a79c62a230ce71d927908051861617db7',·1,·'gmx::PhysicalNodeCommunicator::rank_']54 ········['../classgmx_1_1PhysicalNodeCommunicator.xhtml#a79c62a230ce71d927908051861617db7',·1,·'gmx::PhysicalNodeCommunicator::rank_']
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56 ····['rank_5fdynamic_35',·['rank_dynamic',·['../structgmx_1_1detail_1_1extents__analyse_3_010_01_4.xhtml#a409581965d3fd0b846a8e07caf3c99b5',·1,·'gmx::detail::extents_analyse&lt;·0·&gt;::rank_dynamic()'], 
57 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#a01e169e346558c3306eeedd83410be23',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::rank_dynamic()'],56 ····['rank_5fdynamic_35',·['rank_dynamic',·['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#a01e169e346558c3306eeedd83410be23',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::rank_dynamic()'],
58 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a912b51b44cdb8debd19646667441e7ae',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::rank_dynamic()'],57 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a912b51b44cdb8debd19646667441e7ae',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::rank_dynamic()'],
59 ········['../classgmx_1_1extents.xhtml#a1fea5f754883deea39d015272e3416a9',·1,·'gmx::extents::rank_dynamic()'],58 ········['../classgmx_1_1extents.xhtml#a1fea5f754883deea39d015272e3416a9',·1,·'gmx::extents::rank_dynamic()'],
60 ········['../classgmx_1_1basic__mdspan.xhtml#a9a2766f08ad64cc47f14e69ea749ff8a',·1,·'gmx::basic_mdspan::rank_dynamic()']59 ········['../classgmx_1_1basic__mdspan.xhtml#a9a2766f08ad64cc47f14e69ea749ff8a',·1,·'gmx::basic_mdspan::rank_dynamic()'],
 60 ········['../structgmx_1_1detail_1_1extents__analyse_3_010_01_4.xhtml#a409581965d3fd0b846a8e07caf3c99b5',·1,·'gmx::detail::extents_analyse&lt;·0·&gt;::rank_dynamic()']
61 ····]],61 ····]],
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63 ····['rankdata_5f_37',·['rankData_',·['../classgmx_1_1test_1_1anonymous__namespace_02observablesreducer_8cpp_03_1_1ObservablesReducerIntegrationTest.xhtml#a7312c5aa683c048d3a18a4ffc65b5ee1',·1,·'gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest']]],63 ····['rankdata_5f_37',·['rankData_',·['../classgmx_1_1test_1_1anonymous__namespace_02observablesreducer_8cpp_03_1_1ObservablesReducerIntegrationTest.xhtml#a7312c5aa683c048d3a18a4ffc65b5ee1',·1,·'gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest']]],
64 ····['rankid_38',·['rankid',·['../structPpRanks.xhtml#a036a7b9afeb0b7236fac83eef6d9ccde',·1,·'PpRanks::rankId'],64 ····['rankid_38',·['rankid',·['../structPpRanks.xhtml#a036a7b9afeb0b7236fac83eef6d9ccde',·1,·'PpRanks::rankId'],
65 ········['../structPpRanksSendFInfo.xhtml#ac5f914e09477e4aea6f3e890be23ebc8',·1,·'PpRanksSendFInfo::rankId']65 ········['../structPpRanksSendFInfo.xhtml#ac5f914e09477e4aea6f3e890be23ebc8',·1,·'PpRanksSendFInfo::rankId']
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68 ····['ranksx_40',·['ranksX',·['../structPmeGpuHaloExchange.xhtml#a3bf4456e5038af8f8efa97e775149454',·1,·'PmeGpuHaloExchange']]],68 ····['ranksx_40',·['ranksX',·['../structPmeGpuHaloExchange.xhtml#a3bf4456e5038af8f8efa97e775149454',·1,·'PmeGpuHaloExchange']]],
69 ····['ranksy_41',·['ranksY',·['../structPmeGpuHaloExchange.xhtml#a19a6e73d53924f34cf236d0b59ae00b7',·1,·'PmeGpuHaloExchange']]],69 ····['ranksy_41',·['ranksY',·['../structPmeGpuHaloExchange.xhtml#a19a6e73d53924f34cf236d0b59ae00b7',·1,·'PmeGpuHaloExchange']]],
70 ····['ratio_42',·['Ratio',·['../md__enums_8h.xhtml#a7f23540ff5222f8735be151f3cbd1b2fa8334a158298fbcf163f4dcb4a387d150',·1,·'md_enums.h']]],70 ····['ratio_42',·['Ratio',·['../md__enums_8h.xhtml#a7f23540ff5222f8735be151f3cbd1b2fa8334a158298fbcf163f4dcb4a387d150',·1,·'md_enums.h']]],
71 ····['rawarray_43',·['RawArray',·['../classgmx_1_1BasicVector.xhtml#a24812716e2a9270a0152fa29727d73a4',·1,·'gmx::BasicVector']]],71 ····['rawarray_43',·['RawArray',·['../classgmx_1_1BasicVector.xhtml#a24812716e2a9270a0152fa29727d73a4',·1,·'gmx::BasicVector']]],
72 ····['rb_44',·['rb',·['../structPreprocessResidue.xhtml#a40d4702332b72348628554714c5fe6dc',·1,·'PreprocessResidue::rb'], 
73 ········['../structMoleculePatchDatabase.xhtml#a68aa889f4f9b2e3ff26c7913cdca7b55',·1,·'MoleculePatchDatabase::rb']72 ····['rb_44',·['rb',·['../structMoleculePatchDatabase.xhtml#a68aa889f4f9b2e3ff26c7913cdca7b55',·1,·'MoleculePatchDatabase::rb'],
 73 ········['../structPreprocessResidue.xhtml#a40d4702332b72348628554714c5fe6dc',·1,·'PreprocessResidue::rb']
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76 ····['rbca_46',·['rbcA',·['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#ace80e7170877cc2e6be5f65830b3d7df',·1,·'gmx::test::anonymous_namespace{bonded.cpp}']]],76 ····['rbca_46',·['rbcA',·['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#ace80e7170877cc2e6be5f65830b3d7df',·1,·'gmx::test::anonymous_namespace{bonded.cpp}']]],
77 ····['rbcb_47',·['rbcB',·['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a4bc93c780ee5c78992f36d25c8c09a02',·1,·'gmx::test::anonymous_namespace{bonded.cpp}']]],77 ····['rbcb_47',·['rbcB',·['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a4bc93c780ee5c78992f36d25c8c09a02',·1,·'gmx::test::anonymous_namespace{bonded.cpp}']]],
78 ····['rbegin_48',·['rbegin',·['../structgmx_1_1EnumerationArray.xhtml#a3c4073f6bd7c9f7ba254920e99c4fa03',·1,·'gmx::EnumerationArray::rbegin()'],78 ····['rbegin_48',·['rbegin',·['../classgmx_1_1FixedCapacityVector.xhtml#acfa4fd3f284c1fd7b995ff9672c20f66',·1,·'gmx::FixedCapacityVector::rbegin()·noexcept'],
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79 ········['../classgmx_1_1ArrayRef.xhtml#a5eb194d30a0b1514a6d6042ca648273e',·1,·'gmx::ArrayRef::rbegin()'],80 ········['../classgmx_1_1ArrayRef.xhtml#a5eb194d30a0b1514a6d6042ca648273e',·1,·'gmx::ArrayRef::rbegin()'],
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80 ········['../classgmx_1_1FixedCapacityVector.xhtml#acfa4fd3f284c1fd7b995ff9672c20f66',·1,·'gmx::FixedCapacityVector::rbegin()·noexcept'], 
81 ········['../classgmx_1_1FixedCapacityVector.xhtml#a2ed48fc25c987af541572cab675490d1',·1,·'gmx::FixedCapacityVector::rbegin()·const·noexcept'] 
82 ····]],82 ····]],
83 ····['rcoulomb_5fsq_49',·['rcoulomb_sq',·['../structcl__nbparam__params.xhtml#af3df12659bad33f3f4f263da9f5cb4ca',·1,·'cl_nbparam_params::rcoulomb_sq'],83 ····['rcoulomb_5fsq_49',·['rcoulomb_sq',·['../structcl__nbparam__params.xhtml#af3df12659bad33f3f4f263da9f5cb4ca',·1,·'cl_nbparam_params::rcoulomb_sq'],
84 ········['../structNBParamGpu.xhtml#a093f588a05a481f1622bc106386c7df5',·1,·'NBParamGpu::rcoulomb_sq']84 ········['../structNBParamGpu.xhtml#a093f588a05a481f1622bc106386c7df5',·1,·'NBParamGpu::rcoulomb_sq']
85 ····]],85 ····]],
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87 ········['../group__module__simd.xhtml#ga4c2c3eae5c42d898373ec6e90dd99064',·1,·'gmx::rcp(SimdDouble·x)']87 ········['../group__module__simd.xhtml#ga4c2c3eae5c42d898373ec6e90dd99064',·1,·'gmx::rcp(SimdDouble·x)']
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Offset 106, 31 lines modifiedOffset 106, 31 lines modified
106 ····['read_5ftpr_5fheader_64',·['read_tpr_header',·['../gmx__wham_8cpp.xhtml#a7722683aae4a7fbeca3de229f7efedab',·1,·'gmx_wham.cpp']]],106 ····['read_5ftpr_5fheader_64',·['read_tpr_header',·['../gmx__wham_8cpp.xhtml#a7722683aae4a7fbeca3de229f7efedab',·1,·'gmx_wham.cpp']]],
107 ····['read_5ftpr_5fpullxf_5ffiles_65',·['read_tpr_pullxf_files',·['../gmx__wham_8cpp.xhtml#a9adfb4b234ea6645e67a85f6b1503fc5',·1,·'gmx_wham.cpp']]],107 ····['read_5ftpr_5fpullxf_5ffiles_65',·['read_tpr_pullxf_files',·['../gmx__wham_8cpp.xhtml#a9adfb4b234ea6645e67a85f6b1503fc5',·1,·'gmx_wham.cpp']]],
108 ····['read_5fwham_5fin_66',·['read_wham_in',·['../gmx__wham_8cpp.xhtml#a2b227e67bccc413b5352a9011f9dd2ce',·1,·'gmx_wham.cpp']]],108 ····['read_5fwham_5fin_66',·['read_wham_in',·['../gmx__wham_8cpp.xhtml#a2b227e67bccc413b5352a9011f9dd2ce',·1,·'gmx_wham.cpp']]],
109 ····['readall_67',·['readAll',·['../classgmx_1_1TextReader.xhtml#a0fe2f628d9f57041bd5c14a712e5c0b1',·1,·'gmx::TextReader']]],109 ····['readall_67',·['readAll',·['../classgmx_1_1TextReader.xhtml#a0fe2f628d9f57041bd5c14a712e5c0b1',·1,·'gmx::TextReader']]],
110 ····['readatomicstructurefactors_68',·['readAtomicStructureFactors',·['../namespacegmx.xhtml#a2a8d393afe70146222257f8bb955b627',·1,·'gmx']]],110 ····['readatomicstructurefactors_68',·['readAtomicStructureFactors',·['../namespacegmx.xhtml#a2a8d393afe70146222257f8bb955b627',·1,·'gmx']]],
111 ····['readcharbufferfromfile_69',·['readCharBufferFromFile',·['../namespacegmx_1_1anonymous__namespace_02mrcdensitymap_8cpp_03.xhtml#a251ae26a44272d5cd9fcf0f78898d0aa',·1,·'gmx::anonymous_namespace{mrcdensitymap.cpp}']]],111 ····['readcharbufferfromfile_69',·['readCharBufferFromFile',·['../namespacegmx_1_1anonymous__namespace_02mrcdensitymap_8cpp_03.xhtml#a251ae26a44272d5cd9fcf0f78898d0aa',·1,·'gmx::anonymous_namespace{mrcdensitymap.cpp}']]],
112 ····['readcheckpoint_70',·['readcheckpoint',·['../classgmx_1_1ITemperatureCouplingImpl.xhtml#a94f280e3751b37b4b109a5ff63054b74',·1,·'gmx::ITemperatureCouplingImpl::readCheckpoint()'],112 ····['readcheckpoint_70',·['readcheckpoint',·['../classgmx_1_1ITemperatureCouplingImpl.xhtml#a94f280e3751b37b4b109a5ff63054b74',·1,·'gmx::ITemperatureCouplingImpl::readCheckpoint()'],
113 ········['../classgmx_1_1VRescaleTemperatureCoupling.xhtml#a90f8b87a5b2b0416bab500aebe63a996',·1,·'gmx::VRescaleTemperatureCoupling::readCheckpoint()'], 
114 ········['../classgmx_1_1NoseHooverTemperatureCoupling.xhtml#ad15e911e803e015e6473f7c1eb7f281c',·1,·'gmx::NoseHooverTemperatureCoupling::readCheckpoint()'],113 ········['../classgmx_1_1NoseHooverTemperatureCoupling.xhtml#ad15e911e803e015e6473f7c1eb7f281c',·1,·'gmx::NoseHooverTemperatureCoupling::readCheckpoint()'],
115 ········['../classgmx_1_1BerendsenTemperatureCoupling.xhtml#aa01f54a2056e9aa0a6fa87d52c4d027f',·1,·'gmx::BerendsenTemperatureCoupling::readCheckpoint()']114 ········['../classgmx_1_1BerendsenTemperatureCoupling.xhtml#aa01f54a2056e9aa0a6fa87d52c4d027f',·1,·'gmx::BerendsenTemperatureCoupling::readCheckpoint()'],
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116 ····]],116 ····]],
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118 ····['readcheckpointdataholder_72',·['ReadCheckpointDataHolder',·['../classgmx_1_1ReadCheckpointDataHolder.xhtml',·1,·'gmx']]],118 ····['readcheckpointdataholder_72',·['ReadCheckpointDataHolder',·['../classgmx_1_1ReadCheckpointDataHolder.xhtml',·1,·'gmx']]],
119 ····['readcheckpointtotrxframe_73',·['readcheckpointtotrxframe',·['../classgmx_1_1ModularSimulator.xhtml#a14f99d57fa6ff26d83990460b8e0e097',·1,·'gmx::ModularSimulator::readCheckpointToTrxFrame()'],119 ····['readcheckpointtotrxframe_73',·['readcheckpointtotrxframe',·['../classgmx_1_1StatePropagatorData.xhtml#a333328298283d95aa84be76408da4a7f',·1,·'gmx::StatePropagatorData::readCheckpointToTrxFrame()'],
120 ········['../classgmx_1_1FreeEnergyPerturbationData.xhtml#a7dd83b0ad9158a757e111837bc404731',·1,·'gmx::FreeEnergyPerturbationData::readCheckpointToTrxFrame()'],120 ········['../classgmx_1_1FreeEnergyPerturbationData.xhtml#a7dd83b0ad9158a757e111837bc404731',·1,·'gmx::FreeEnergyPerturbationData::readCheckpointToTrxFrame()'],
121 ········['../classgmx_1_1StatePropagatorData.xhtml#a333328298283d95aa84be76408da4a7f',·1,·'gmx::StatePropagatorData::readCheckpointToTrxFrame()']121 ········['../classgmx_1_1ModularSimulator.xhtml#a14f99d57fa6ff26d83990460b8e0e097',·1,·'gmx::ModularSimulator::readCheckpointToTrxFrame()']
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47 ····]],47 ····]],
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49 ····['samplepmf_30',·['samplePmf',·['../classgmx_1_1PointState.xhtml#ac8d8b78b589249e076f4de69de2c5b80',·1,·'gmx::PointState']]],49 ····['samplepmf_30',·['samplePmf',·['../classgmx_1_1PointState.xhtml#ac8d8b78b589249e076f4de69de2c5b80',·1,·'gmx::PointState']]],
50 ····['sampleprobabilityweights_31',·['sampleProbabilityWeights',·['../classgmx_1_1BiasState.xhtml#a791a4e299b421a59352ecd8e742d2930',·1,·'gmx::BiasState']]],50 ····['sampleprobabilityweights_31',·['sampleProbabilityWeights',·['../classgmx_1_1BiasState.xhtml#a791a4e299b421a59352ecd8e742d2930',·1,·'gmx::BiasState']]],
51 ····['samples_32',·['Samples',·['../md__enums_8h.xhtml#a7f23540ff5222f8735be151f3cbd1b2fadb8d503322c46d746776ccb54dbb91eb',·1,·'md_enums.h']]],51 ····['samples_32',·['Samples',·['../md__enums_8h.xhtml#a7f23540ff5222f8735be151f3cbd1b2fadb8d503322c46d746776ccb54dbb91eb',·1,·'md_enums.h']]],
52 ····['sampletimestep_5f_33',·['sampleTimeStep_',·['../classgmx_1_1test_1_1FrictionMetricTest.xhtml#a7a3203a2a9c9bcb96402d45c01b335c9',·1,·'gmx::test::FrictionMetricTest']]],52 ····['sampletimestep_5f_33',·['sampleTimeStep_',·['../classgmx_1_1test_1_1FrictionMetricTest.xhtml#a7a3203a2a9c9bcb96402d45c01b335c9',·1,·'gmx::test::FrictionMetricTest']]],
53 ····['sampleumbrellagridpoint_34',·['sampleUmbrellaGridpoint',·['../classgmx_1_1CoordState.xhtml#a1aa3af22572f99449b840feb0a9c3163',·1,·'gmx::CoordState']]],53 ····['sampleumbrellagridpoint_34',·['sampleUmbrellaGridpoint',·['../classgmx_1_1CoordState.xhtml#a1aa3af22572f99449b840feb0a9c3163',·1,·'gmx::CoordState']]],
Offset 56, 40 lines modifiedOffset 56, 40 lines modified
56 ····['sandrtty_37',·['sandrTty',·['../group__module__onlinehelp.xhtml#gae3530d298597983b6376c48e09c63816',·1,·'gmx::anonymous_namespace{helpwritercontext.cpp}']]],56 ····['sandrtty_37',·['sandrTty',·['../group__module__onlinehelp.xhtml#gae3530d298597983b6376c48e09c63816',·1,·'gmx::anonymous_namespace{helpwritercontext.cpp}']]],
57 ····['sanegridsize_38',·['saneGridSize',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#ac12a9dbfe8934c0c457c4af83bde4b03',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],57 ····['sanegridsize_38',·['saneGridSize',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#ac12a9dbfe8934c0c457c4af83bde4b03',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],
58 ····['sanepmeorder_39',·['sanePmeOrder',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#a047f81edad8ec7a240a3152c46618198',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],58 ····['sanepmeorder_39',·['sanePmeOrder',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#a047f81edad8ec7a240a3152c46618198',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],
59 ····['sansdebye_40',·['sansdebye',·['../classgmx_1_1SansDebye.xhtml',·1,·'gmx::SansDebye'],59 ····['sansdebye_40',·['sansdebye',·['../classgmx_1_1SansDebye.xhtml',·1,·'gmx::SansDebye'],
60 ········['../classgmx_1_1SansDebye.xhtml#a0bb2e9276239b93f79d72cdf773e8fa0',·1,·'gmx::SansDebye::SansDebye()']60 ········['../classgmx_1_1SansDebye.xhtml#a0bb2e9276239b93f79d72cdf773e8fa0',·1,·'gmx::SansDebye::SansDebye()']
61 ····]],61 ····]],
62 ····['sasa_41',·['Sasa',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1Sasa.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}']]],62 ····['sasa_41',·['Sasa',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1Sasa.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}']]],
63 ····['sasa_2ecpp_42',·['sasa.cpp',·['../modules_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)'],63 ····['sasa_2ecpp_42',·['sasa.cpp',·['../tests_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)'],
64 ········['../tests_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)']64 ········['../modules_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)']
65 ····]],65 ····]],
66 ····['sasa_2eh_43',·['sasa.h',·['../sasa_8h.xhtml',·1,·'']]],66 ····['sasa_2eh_43',·['sasa.h',·['../sasa_8h.xhtml',·1,·'']]],
 67 ····['sasamoduledata_44',·['sasamoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1SasaModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData'],
67 ····['sasamoduledata_44',·['sasamoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1SasaModuleData.xhtml#a2edf401c89ecb50a5154e2b5e1c8a1f9',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData::SasaModule[·...·truncated·by·diffoscope;·len:·9,·SHA:·932de44abf2a0a6d64e75e556617faf35b79da40bd13d43f1824494df38e2ff5·...·]68 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1SasaModuleData.xhtml#a2edf401c89ecb50a5154e2b5e1c8a1f9',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData::SasaModuleData()']
68 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1SasaModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData'] 
69 ····]],69 ····]],
70 ····['sasamoduletest_45',·['SasaModuleTest',·['../namespaceanonymous__namespace_02sasa_8cpp_03.xhtml#a363431637ae34b870c107442404b3f84',·1,·'anonymous_namespace{sasa.cpp}']]],70 ····['sasamoduletest_45',·['SasaModuleTest',·['../namespaceanonymous__namespace_02sasa_8cpp_03.xhtml#a363431637ae34b870c107442404b3f84',·1,·'anonymous_namespace{sasa.cpp}']]],
71 ····['save_5fcalloc_46',·['save_calloc',·['../smalloc_8h.xhtml#af6d73f5ac19d401287ec06c2bbe8b73b',·1,·'smalloc.cpp']]],71 ····['save_5fcalloc_46',·['save_calloc',·['../smalloc_8h.xhtml#af6d73f5ac19d401287ec06c2bbe8b73b',·1,·'smalloc.cpp']]],
72 ····['save_5fcalloc_5faligned_47',·['save_calloc_aligned',·['../smalloc_8h.xhtml#a8d03915277e0b152e4d383811d8872e1',·1,·'smalloc.cpp']]],72 ····['save_5fcalloc_5faligned_47',·['save_calloc_aligned',·['../smalloc_8h.xhtml#a8d03915277e0b152e4d383811d8872e1',·1,·'smalloc.cpp']]],
73 ····['save_5ffree_48',·['save_free',·['../smalloc_8h.xhtml#a1a8ebd96b293ca1f67b3dd41ff1eb43a',·1,·'smalloc.h']]],73 ····['save_5ffree_48',·['save_free',·['../smalloc_8h.xhtml#a1a8ebd96b293ca1f67b3dd41ff1eb43a',·1,·'smalloc.h']]],
74 ····['save_5ffree_5faligned_49',·['save_free_aligned',·['../smalloc_8h.xhtml#ae35d52a2d595ae960055674b4a0d566a',·1,·'smalloc.h']]],74 ····['save_5ffree_5faligned_49',·['save_free_aligned',·['../smalloc_8h.xhtml#ae35d52a2d595ae960055674b4a0d566a',·1,·'smalloc.h']]],
75 ····['save_5fmalloc_50',·['save_malloc',·['../smalloc_8h.xhtml#a4aa36d45cbe79ee551ea9d2e032be5c7',·1,·'smalloc.cpp']]],75 ····['save_5fmalloc_50',·['save_malloc',·['../smalloc_8h.xhtml#a4aa36d45cbe79ee551ea9d2e032be5c7',·1,·'smalloc.cpp']]],
76 ····['save_5fmalloc_5faligned_51',·['save_malloc_aligned',·['../smalloc_8h.xhtml#ac9f21a1f7ef12e856e74372d8cb9d233',·1,·'smalloc.cpp']]],76 ····['save_5fmalloc_5faligned_51',·['save_malloc_aligned',·['../smalloc_8h.xhtml#ac9f21a1f7ef12e856e74372d8cb9d233',·1,·'smalloc.cpp']]],
77 ····['save_5frealloc_52',·['save_realloc',·['../smalloc_8h.xhtml#af31ca8a44667bdd81e548e75a7b0a31d',·1,·'smalloc.cpp']]],77 ····['save_5frealloc_52',·['save_realloc',·['../smalloc_8h.xhtml#af31ca8a44667bdd81e548e75a7b0a31d',·1,·'smalloc.cpp']]],
 78 ····['savecheckpointstate_53',·['savecheckpointstate',·['../classgmx_1_1NoseHooverChainsData.xhtml#af201f4dac2c01518d6a465a1e395d693',·1,·'gmx::NoseHooverChainsData::saveCheckpointState()'],
78 ····['savecheckpointstate_53',·['savecheckpointstate',·['../classgmx_1_1VelocityScalingTemperatureCoupling.xhtml#a0613305c51cd85f761021905a7cc6000',·1,·'gmx::VelocityScalingTemperatureCoupling::saveCheckpointState()'], 
79 ········['../classgmx_1_1EnergyData_1_1Element.xhtml#a955025d3dc2badd068819b0366263f21',·1,·'gmx::EnergyData::Element::saveCheckpointState()'], 
80 ········['../classgmx_1_1ExpandedEnsembleElement.xhtml#aa81f8ca220fe300d1c4ea3aa561c7d4d',·1,·'gmx::ExpandedEnsembleElement::saveCheckpointState()'], 
81 ········['../classgmx_1_1FirstOrderPressureCoupling.xhtml#a7215fd9b674948475b7a7394a34cf3e9',·1,·'gmx::FirstOrderPressureCoupling::saveCheckpointState()'], 
82 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#aa845e4a2a85e58b53f868a3bfe74311a',·1,·'gmx::FreeEnergyPerturbationData::Element::saveCheckpointState()'], 
83 ········['../group__module__modularsimulator.xhtml#gaa70e5868cd4b8559099c8b687810f8df',·1,·'gmx::ICheckpointHelperClient::saveCheckpointState()'], 
84 ········['../classgmx_1_1MttkData.xhtml#acf983f5ad30b4b8792883b4a69799566',·1,·'gmx::MttkData::saveCheckpointState()'],79 ········['../classgmx_1_1MttkData.xhtml#acf983f5ad30b4b8792883b4a69799566',·1,·'gmx::MttkData::saveCheckpointState()'],
85 ········['../classgmx_1_1NoseHooverChainsData.xhtml#af201f4dac2c01518d6a465a1e395d693',·1,·'gmx::NoseHooverChainsData::saveCheckpointState()'], 
86 ········['../classgmx_1_1ParrinelloRahmanBarostat.xhtml#a6c4ff548b028800659e1e5b01b050cf3',·1,·'gmx::ParrinelloRahmanBarostat::saveCheckpointState()'],80 ········['../classgmx_1_1ParrinelloRahmanBarostat.xhtml#a6c4ff548b028800659e1e5b01b050cf3',·1,·'gmx::ParrinelloRahmanBarostat::saveCheckpointState()'],
 81 ········['../group__module__modularsimulator.xhtml#gaa70e5868cd4b8559099c8b687810f8df',·1,·'gmx::ICheckpointHelperClient::saveCheckpointState()'],
 82 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#aa845e4a2a85e58b53f868a3bfe74311a',·1,·'gmx::FreeEnergyPerturbationData::Element::saveCheckpointState()'],
 83 ········['../classgmx_1_1FirstOrderPressureCoupling.xhtml#a7215fd9b674948475b7a7394a34cf3e9',·1,·'gmx::FirstOrderPressureCoupling::saveCheckpointState()'],
 84 ········['../classgmx_1_1ExpandedEnsembleElement.xhtml#aa81f8ca220fe300d1c4ea3aa561c7d4d',·1,·'gmx::ExpandedEnsembleElement::saveCheckpointState()'],
 85 ········['../classgmx_1_1EnergyData_1_1Element.xhtml#a955025d3dc2badd068819b0366263f21',·1,·'gmx::EnergyData::Element::saveCheckpointState()'],
87 ········['../classgmx_1_1PullElement.xhtml#acb46bbfd7f683624c4e04585d7151fae',·1,·'gmx::PullElement::saveCheckpointState()'],86 ········['../classgmx_1_1PullElement.xhtml#acb46bbfd7f683624c4e04585d7151fae',·1,·'gmx::PullElement::saveCheckpointState()'],
88 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#aed73d86e0139c581fb13f5a64c3ac591',·1,·'gmx::StatePropagatorData::Element::saveCheckpointState()']87 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#aed73d86e0139c581fb13f5a64c3ac591',·1,·'gmx::StatePropagatorData::Element::saveCheckpointState()'],
 88 ········['../classgmx_1_1VelocityScalingTemperatureCoupling.xhtml#a0613305c51cd85f761021905a7cc6000',·1,·'gmx::VelocityScalingTemperatureCoupling::saveCheckpointState()']
89 ····]],89 ····]],
90 ····['saveedsampointer_54',·['saveEdsamPointer',·['../classgmx_1_1Constraints.xhtml#aa20d0b058932c4e3ff6725444de6499f',·1,·'gmx::Constraints']]],90 ····['saveedsampointer_54',·['saveEdsamPointer',·['../classgmx_1_1Constraints.xhtml#aa20d0b058932c4e3ff6725444de6499f',·1,·'gmx::Constraints']]],
91 ····['saxsdebye_55',·['saxsdebye',·['../classgmx_1_1SaxsDebye.xhtml#a678e01fbb38f9e7d22bb5bd2efa414b6',·1,·'gmx::SaxsDebye::SaxsDebye()'],91 ····['saxsdebye_55',·['saxsdebye',·['../classgmx_1_1SaxsDebye.xhtml#a678e01fbb38f9e7d22bb5bd2efa414b6',·1,·'gmx::SaxsDebye::SaxsDebye()'],
92 ········['../classgmx_1_1SaxsDebye.xhtml',·1,·'gmx::SaxsDebye']92 ········['../classgmx_1_1SaxsDebye.xhtml',·1,·'gmx::SaxsDebye']
93 ····]],93 ····]],
94 ····['sbase_56',·['sbase',·['../structgmx__ana__poscalc__t.xhtml#a72b00bc053d3b7b79e594b1b6e5fa733',·1,·'gmx_ana_poscalc_t']]],94 ····['sbase_56',·['sbase',·['../structgmx__ana__poscalc__t.xhtml#a72b00bc053d3b7b79e594b1b6e5fa733',·1,·'gmx_ana_poscalc_t']]],
95 ····['sblock_57',·['sblock',·['../structgmx_1_1shakedata.xhtml#a119cbdb92204daa557f75d7a14bbeb8c',·1,·'gmx::shakedata']]],95 ····['sblock_57',·['sblock',·['../structgmx_1_1shakedata.xhtml#a119cbdb92204daa557f75d7a14bbeb8c',·1,·'gmx::shakedata']]],
Offset 113, 17 lines modifiedOffset 113, 17 lines modified
113 ····['sc_5fworkgroupsize_75',·['sc_workGroupSize',·['../namespacegmx.xhtml#ac85e48554e6e1788ea930b7064d371a6',·1,·'gmx']]],113 ····['sc_5fworkgroupsize_75',·['sc_workGroupSize',·['../namespacegmx.xhtml#ac85e48554e6e1788ea930b7064d371a6',·1,·'gmx']]],
114 ····['sc_5fxoldwholename_5f_76',·['sc_xOldWholeName_',·['../structgmx_1_1ColvarsForceProviderState.xhtml#a4ae85de69074dadd19c5fc012a3cccc8',·1,·'gmx::ColvarsForceProviderState']]],114 ····['sc_5fxoldwholename_5f_76',·['sc_xOldWholeName_',·['../structgmx_1_1ColvarsForceProviderState.xhtml#a4ae85de69074dadd19c5fc012a3cccc8',·1,·'gmx::ColvarsForceProviderState']]],
115 ····['scalar_2eh_77',·['scalar.h',·['../scalar_8h.xhtml',·1,·'']]],115 ····['scalar_2eh_77',·['scalar.h',·['../scalar_8h.xhtml',·1,·'']]],
116 ····['scalar_5fmath_2eh_78',·['scalar_math.h',·['../scalar__math_8h.xhtml',·1,·'']]],116 ····['scalar_5fmath_2eh_78',·['scalar_math.h',·['../scalar__math_8h.xhtml',·1,·'']]],
117 ····['scalar_5futil_2eh_79',·['scalar_util.h',·['../scalar__util_8h.xhtml',·1,·'']]],117 ····['scalar_5futil_2eh_79',·['scalar_util.h',·['../scalar__util_8h.xhtml',·1,·'']]],
118 ····['scalardatatypes_80',·['ScalarDataTypes',·['../structScalarDataTypes.xhtml',·1,·'']]],118 ····['scalardatatypes_80',·['ScalarDataTypes',·['../structScalarDataTypes.xhtml',·1,·'']]],
119 ····['scalarforce_81',·['scalarForce',·['../structpull__coord__work__t.xhtml#adde522794352e2ebc796944dcda04204',·1,·'pull_coord_work_t']]],119 ····['scalarforce_81',·['scalarForce',·['../structpull__coord__work__t.xhtml#adde522794352e2ebc796944dcda04204',·1,·'pull_coord_work_t']]],
120 ····['scale_82',·['scale',·['../structt__forcetable.xhtml#a74042b613c0660e9d1a66b49147d0159',·1,·'t_forcetable::scale'], 
121 ········['../classgmx_1_1MttkData.xhtml#aa587cc1c76049dce893923692e23d769',·1,·'gmx::MttkData::scale()'],120 ····['scale_82',·['scale',·['../classgmx_1_1MttkData.xhtml#aa587cc1c76049dce893923692e23d769',·1,·'gmx::MttkData::scale()'],
122 ········['../structPmeGpuDynamicParams.xhtml#a5c019da79bddcfb0ac07f2a757a269bc',·1,·'PmeGpuDynamicParams::scale']121 ········['../structPmeGpuDynamicParams.xhtml#a5c019da79bddcfb0ac07f2a757a269bc',·1,·'PmeGpuDynamicParams::scale'],
 122 ········['../structt__forcetable.xhtml#a74042b613c0660e9d1a66b49147d0159',·1,·'t_forcetable::scale']
123 ····]],123 ····]],
124 ····['scaleall_83',·['scaleAll',·['../classgmx_1_1AbstractAverageHistogram.xhtml#a749915682fa7728ee088dfd6726b1736',·1,·'gmx::AbstractAverageHistogram']]],124 ····['scaleall_83',·['scaleAll',·['../classgmx_1_1AbstractAverageHistogram.xhtml#a749915682fa7728ee088dfd6726b1736',·1,·'gmx::AbstractAverageHistogram']]],
125 ····['scaleallbyvector_84',·['scaleAllByVector',·['../classgmx_1_1AbstractAverageHistogram.xhtml#aabe3becd12550d662e727afbd168f433',·1,·'gmx::AbstractAverageHistogram']]],125 ····['scaleallbyvector_84',·['scaleAllByVector',·['../classgmx_1_1AbstractAverageHistogram.xhtml#aabe3becd12550d662e727afbd168f433',·1,·'gmx::AbstractAverageHistogram']]],
126 ····['scalebox_85',·['scaleBox',·['../classEwaldBoxZScaler.xhtml#a67431757f83b309cf81b3cf96eabe7bf',·1,·'EwaldBoxZScaler']]],126 ····['scalebox_85',·['scaleBox',·['../classEwaldBoxZScaler.xhtml#a67431757f83b309cf81b3cf96eabe7bf',·1,·'EwaldBoxZScaler']]],
127 ····['scalebyvector_86',·['scaleByVector',·['../namespacegmx.xhtml#ae92e5fa525c52dcde660bb171c3fe5a2',·1,·'gmx']]],127 ····['scalebyvector_86',·['scaleByVector',·['../namespacegmx.xhtml#ae92e5fa525c52dcde660bb171c3fe5a2',·1,·'gmx']]],
128 ····['scalecoordinates_87',·['scaleCoordinates',·['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a9376d1cbbecb20c18661950973814d0d',·1,·'gmx::UpdateConstrainGpu::Impl']]],128 ····['scalecoordinates_87',·['scaleCoordinates',·['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a9376d1cbbecb20c18661950973814d0d',·1,·'gmx::UpdateConstrainGpu::Impl']]],
129 ····['scaled_5flagrange_5fmultiplier_88',·['scaled_lagrange_multiplier',·['../structgmx_1_1shakedata.xhtml#adde8f58fcb5ada8d634039c00ca42a58',·1,·'gmx::shakedata']]],129 ····['scaled_5flagrange_5fmultiplier_88',·['scaled_lagrange_multiplier',·['../structgmx_1_1shakedata.xhtml#adde8f58fcb5ada8d634039c00ca42a58',·1,·'gmx::shakedata']]],
Offset 136, 16 lines modifiedOffset 136, 16 lines modified
136 ····]],136 ····]],
137 ····['scalesingle_94',·['scaleSingle',·['../classgmx_1_1AbstractAverageHistogram.xhtml#abb37138b6fef236b38b46177ab3a7f16',·1,·'gmx::AbstractAverageHistogram']]],137 ····['scalesingle_94',·['scaleSingle',·['../classgmx_1_1AbstractAverageHistogram.xhtml#abb37138b6fef236b38b46177ab3a7f16',·1,·'gmx::AbstractAverageHistogram']]],
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Offset 64, 55 lines modifiedOffset 64, 55 lines modified
64 ····['tableinteraction_49',·['TableInteraction',·['../forcetable_8h.xhtml#a5ab83e2e3173b76df0ca2b9ca595040c',·1,·'forcetable.h']]],64 ····['tableinteraction_49',·['TableInteraction',·['../forcetable_8h.xhtml#a5ab83e2e3173b76df0ca2b9ca595040c',·1,·'forcetable.h']]],
65 ····['tablesoffsets_50',·['tablesOffsets',·['../structPmeGpuGridParams.xhtml#a705c9e648f29b1dc77275482d31b5e2e',·1,·'PmeGpuGridParams']]],65 ····['tablesoffsets_50',·['tablesOffsets',·['../structPmeGpuGridParams.xhtml#a705c9e648f29b1dc77275482d31b5e2e',·1,·'PmeGpuGridParams']]],
66 ····['tablespacing_51',·['tablespacing',·['../classgmx_1_1CubicSplineTable.xhtml#a68e69e9f9e7653a0f59b4417d9278055',·1,·'gmx::CubicSplineTable::tableSpacing()'],66 ····['tablespacing_51',·['tablespacing',·['../classgmx_1_1CubicSplineTable.xhtml#a68e69e9f9e7653a0f59b4417d9278055',·1,·'gmx::CubicSplineTable::tableSpacing()'],
67 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a01c2df243de4371cf4c88ed712073ec4',·1,·'gmx::QuadraticSplineTable::tableSpacing()']67 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a01c2df243de4371cf4c88ed712073ec4',·1,·'gmx::QuadraticSplineTable::tableSpacing()']
68 ····]],68 ····]],
69 ····['tabulated_5fbonded_5finteractions_2ecpp_52',·['tabulated_bonded_interactions.cpp',·['../tabulated__bonded__interactions_8cpp.xhtml',·1,·'']]],69 ····['tabulated_5fbonded_5finteractions_2ecpp_52',·['tabulated_bonded_interactions.cpp',·['../tabulated__bonded__interactions_8cpp.xhtml',·1,·'']]],
70 ····['tabulated_5fpot_53',·['tabulated_pot',·['../gmx__wham_8cpp.xhtml#a0274f4fbc68349f4127af1ea77473b89',·1,·'gmx_wham.cpp']]],70 ····['tabulated_5fpot_53',·['tabulated_pot',·['../gmx__wham_8cpp.xhtml#a0274f4fbc68349f4127af1ea77473b89',·1,·'gmx_wham.cpp']]],
71 ····['tabulatednormaldistribution_54',·['tabulatednormaldistribution',·['../classgmx_1_1TabulatedNormalDistribution.xhtml#abb053676a2ca8ed4f5a9908bc70f25a7',·1,·'gmx::TabulatedNormalDistribution::TabulatedNormalDistribution()'],71 ····['tabulatednormaldistribution_54',·['tabulatednormaldistribution',·['../classgmx_1_1TabulatedNormalDistribution.xhtml#ad090e6c16ba8f5b3a5408d8c07788dd3',·1,·'gmx::TabulatedNormalDistribution::TabulatedNormalDistribution(const·param_type·&amp;param)'],
 72 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#abb053676a2ca8ed4f5a9908bc70f25a7',·1,·'gmx::TabulatedNormalDistribution::TabulatedNormalDistribution(result_type·mean=0.0,·result_type·stddev=1.0)'],
72 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml',·1,·'gmx::TabulatedNormalDistribution&lt;·RealType,·tableBits·&gt;'],73 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml',·1,·'gmx::TabulatedNormalDistribution&lt;·RealType,·tableBits·&gt;']
73 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#ad090e6c16ba8f5b3a5408d8c07788dd3',·1,·'gmx::TabulatedNormalDistribution::TabulatedNormalDistribution()'] 
74 ····]],74 ····]],
75 ····['tabulatednormaldistribution_2ecpp_55',·['tabulatednormaldistribution.cpp',·['../tests_2tabulatednormaldistribution_8cpp.xhtml',·1,·'']]],75 ····['tabulatednormaldistribution_2ecpp_55',·['tabulatednormaldistribution.cpp',·['../tests_2tabulatednormaldistribution_8cpp.xhtml',·1,·'']]],
76 ····['tabulatednormaldistribution_2eh_56',·['tabulatednormaldistribution.h',·['../tabulatednormaldistribution_8h.xhtml',·1,·'']]],76 ····['tabulatednormaldistribution_2eh_56',·['tabulatednormaldistribution.h',·['../tabulatednormaldistribution_8h.xhtml',·1,·'']]],
77 ····['tabulatestructurefactors_57',·['tabulateStructureFactors',·['../ewald_8cpp.xhtml#aa3544b10e91b5c8dcfa5a114a5bc5a96',·1,·'ewald.cpp']]],77 ····['tabulatestructurefactors_57',·['tabulateStructureFactors',·['../ewald_8cpp.xhtml#aa3544b10e91b5c8dcfa5a114a5bc5a96',·1,·'ewald.cpp']]],
78 ····['tag_58',·['tag',·['../group__module__modularsimulator.xhtml#ga049d88cc31c3267253efbde42699ad28',·1,·'gmx::PropagatorConnection']]],78 ····['tag_58',·['tag',·['../group__module__modularsimulator.xhtml#ga049d88cc31c3267253efbde42699ad28',·1,·'gmx::PropagatorConnection']]],
79 ····['tan_59',·['tan',·['../namespacegmx.xhtml#a7063173231453ec737688c8d91aa0749',·1,·'gmx::tan(float·x)'], 
80 ········['../namespacegmx.xhtml#a45e727a4960ac7f8ba5149f9b251c520',·1,·'gmx::tan(double·x)']79 ····['tan_59',·['tan',·['../namespacegmx.xhtml#a45e727a4960ac7f8ba5149f9b251c520',·1,·'gmx::tan(double·x)'],
 80 ········['../namespacegmx.xhtml#a7063173231453ec737688c8d91aa0749',·1,·'gmx::tan(float·x)']
81 ····]],81 ····]],
82 ····['tansingleaccuracy_60',·['tanSingleAccuracy',·['../namespacegmx.xhtml#a0f979f3defa4f725cfce2d7e93fc0d9e',·1,·'gmx']]],82 ····['tansingleaccuracy_60',·['tanSingleAccuracy',·['../namespacegmx.xhtml#a0f979f3defa4f725cfce2d7e93fc0d9e',·1,·'gmx']]],
83 ····['target_61',·['target',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#ae261c5a75fa1c55507798631058dd98aac41a31890959544c6523af684561abe5',·1,·'anonymous_namespace{edsam.cpp}::Target'],83 ····['target_61',·['target',·['../classgmx_1_1PointState.xhtml#a573114820ae0977c2eb9c666068351fd',·1,·'gmx::PointState::target()'],
84 ········['../namespacegmx.xhtml#aed0429233bc357e419dafee7b8bd1344ac41a31890959544c6523af684561abe5',·1,·'gmx::Target'],84 ········['../namespacegmx.xhtml#aed0429233bc357e419dafee7b8bd1344ac41a31890959544c6523af684561abe5',·1,·'gmx::Target'],
85 ········['../classgmx_1_1PointState.xhtml#a573114820ae0977c2eb9c666068351fd',·1,·'gmx::PointState::target()']85 ········['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#ae261c5a75fa1c55507798631058dd98aac41a31890959544c6523af684561abe5',·1,·'anonymous_namespace{edsam.cpp}::Target']
86 ····]],86 ····]],
87 ····['targetbinsize_62',·['targetbinsize',·['../structmethoddata__insolidangle.xhtml#a17572bdc8c982bc6913a351b6b84ada6',·1,·'methoddata_insolidangle']]],87 ····['targetbinsize_62',·['targetbinsize',·['../structmethoddata__insolidangle.xhtml#a17572bdc8c982bc6913a351b6b84ada6',·1,·'methoddata_insolidangle']]],
88 ····['targeterror_63',·['TargetError',·['../namespacegmx.xhtml#aa78c6481d10a93316c155ffdf021e581a461586ff73a95486e167031a14a63505',·1,·'gmx']]],88 ····['targeterror_63',·['TargetError',·['../namespacegmx.xhtml#aa78c6481d10a93316c155ffdf021e581a461586ff73a95486e167031a14a63505',·1,·'gmx']]],
89 ····['targetmetricscalinglimit_64',·['targetMetricScalingLimit',·['../classgmx_1_1BiasParams.xhtml#ac7f8b46646c1728c7b6938077dff82f6',·1,·'gmx::BiasParams']]],89 ····['targetmetricscalinglimit_64',·['targetMetricScalingLimit',·['../classgmx_1_1BiasParams.xhtml#ac7f8b46646c1728c7b6938077dff82f6',·1,·'gmx::BiasParams']]],
90 ····['task_65',·['task',·['../classgmx_1_1Lincs.xhtml#add4a8ebb5f4f323ded4a65a105eb9830',·1,·'gmx::Lincs::task'], 
91 ········['../structanonymous__namespace_02lincs_8cpp_03_1_1Task.xhtml',·1,·'anonymous_namespace{lincs.cpp}::Task']90 ····['task_65',·['task',·['../structanonymous__namespace_02lincs_8cpp_03_1_1Task.xhtml',·1,·'anonymous_namespace{lincs.cpp}::Task'],
 91 ········['../classgmx_1_1Lincs.xhtml#add4a8ebb5f4f323ded4a65a105eb9830',·1,·'gmx::Lincs::task']
92 ····]],92 ····]],
93 ····['task_20scheduling_66',·['Task·scheduling',·['../page_modularsimulator.xhtml#autotoc_md18',·1,·'']]],93 ····['task_20scheduling_66',·['Task·scheduling',·['../page_modularsimulator.xhtml#autotoc_md18',·1,·'']]],
94 ····['task_5f_67',·['task_',·['../structgmx_1_1GpuTaskMapping.xhtml#a223bdfc8230aa17421c2de16cbf4ce81',·1,·'gmx::GpuTaskMapping']]],94 ····['task_5f_67',·['task_',·['../structgmx_1_1GpuTaskMapping.xhtml#a223bdfc8230aa17421c2de16cbf4ce81',·1,·'gmx::GpuTaskMapping']]],
95 ····['taskassignment_68',·['Assigning·simulation·tasks·to·hardware·(taskassignment)',·['../group__module__taskassignment.xhtml',·1,·'']]],95 ····['taskassignment_68',·['Assigning·simulation·tasks·to·hardware·(taskassignment)',·['../group__module__taskassignment.xhtml',·1,·'']]],
96 ····['taskassignment_2ecpp_69',·['taskassignment.cpp',·['../taskassignment_8cpp.xhtml',·1,·'']]],96 ····['taskassignment_2ecpp_69',·['taskassignment.cpp',·['../taskassignment_8cpp.xhtml',·1,·'']]],
97 ····['taskassignment_2eh_70',·['taskassignment.h',·['../taskassignment_8h.xhtml',·1,·'']]],97 ····['taskassignment_2eh_70',·['taskassignment.h',·['../taskassignment_8h.xhtml',·1,·'']]],
98 ····['tasks_20to_20hardware_20taskassignment_71',·['Assigning·simulation·tasks·to·hardware·(taskassignment)',·['../group__module__taskassignment.xhtml',·1,·'']]],98 ····['tasks_20to_20hardware_20taskassignment_71',·['Assigning·simulation·tasks·to·hardware·(taskassignment)',·['../group__module__taskassignment.xhtml',·1,·'']]],
99 ····['tasktarget_72',·['TaskTarget',·['../namespacegmx.xhtml#aacf83788a301a602c40e8a49fce9c5e8',·1,·'gmx']]],99 ····['tasktarget_72',·['TaskTarget',·['../namespacegmx.xhtml#aacf83788a301a602c40e8a49fce9c5e8',·1,·'gmx']]],
 100 ····['tau_73',·['tau',·['../structt__UmbrellaWindow.xhtml#a4a7d5d96a6026b0db6cc024d590e4ba6',·1,·'t_UmbrellaWindow::tau'],
100 ····['tau_73',·['tau',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#ae44c5c0ce2cb51e35e160b41feae02d0',·1,·'anonymous_namespace{edsam.cpp}::t_edflood::tau'],101 ········['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#ae44c5c0ce2cb51e35e160b41feae02d0',·1,·'anonymous_namespace{edsam.cpp}::t_edflood::tau']
101 ········['../structt__UmbrellaWindow.xhtml#a4a7d5d96a6026b0db6cc024d590e4ba6',·1,·'t_UmbrellaWindow::tau'] 
102 ····]],102 ····]],
103 ····['tausmooth_74',·['tausmooth',·['../structt__UmbrellaWindow.xhtml#adca5c639bf77415ff74cdd36259747ac',·1,·'t_UmbrellaWindow']]],103 ····['tausmooth_74',·['tausmooth',·['../structt__UmbrellaWindow.xhtml#adca5c639bf77415ff74cdd36259747ac',·1,·'t_UmbrellaWindow']]],
104 ····['tbin_75',·['tbin',·['../structmethoddata__insolidangle.xhtml#a8e051ab9e3b8939ceaf35aea4b20c980',·1,·'methoddata_insolidangle']]],104 ····['tbin_75',·['tbin',·['../structmethoddata__insolidangle.xhtml#a8e051ab9e3b8939ceaf35aea4b20c980',·1,·'methoddata_insolidangle']]],
105 ····['tbinsize_76',·['tbinsize',·['../structmethoddata__insolidangle.xhtml#a37c045688253e214ec4f38582c565d5a',·1,·'methoddata_insolidangle']]],105 ····['tbinsize_76',·['tbinsize',·['../structmethoddata__insolidangle.xhtml#a37c045688253e214ec4f38582c565d5a',·1,·'methoddata_insolidangle']]],
106 ····['teardown_77',·['teardown',·['../classgmx_1_1PmeLoadBalanceHelper.xhtml#a3130fd41d2ff2414f0fc6089b586d5bb',·1,·'gmx::PmeLoadBalanceHelper::teardown()'],106 ····['teardown_77',·['teardown',·['../classgmx_1_1PmeLoadBalanceHelper.xhtml#a3130fd41d2ff2414f0fc6089b586d5bb',·1,·'gmx::PmeLoadBalanceHelper::teardown()'],
107 ········['../classgmx_1_1EnergyData.xhtml#ab37d08455a3f6c93bf73d3b6983f99af',·1,·'gmx::EnergyData::teardown()']107 ········['../classgmx_1_1EnergyData.xhtml#ab37d08455a3f6c93bf73d3b6983f99af',·1,·'gmx::EnergyData::teardown()']
108 ····]],108 ····]],
109 ····['teardowntestsuite_78',·['teardowntestsuite',·['../classgmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03_1_1PmeTest.xhtml#a96d5a35582f00b8736e036fc362034d0',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest::TearDownTestSuite()'],109 ····['teardowntestsuite_78',·['teardowntestsuite',·['../classanonymous__namespace_02domain__decomposition_8cpp_03_1_1DomDecSpecialCasesTest.xhtml#a1f99d295d63d1aa9dfd1dde3aa1300ad',·1,·'anonymous_namespace{domain_decomposition.cpp}::DomDecSpecialCasesTest::TearDownTestSuite()'],
110 ········['../classgmx_1_1test_1_1MdrunTestFixtureBase.xhtml#aeb3adf1e5777af74e64006f41c7ed0fd',·1,·'gmx::test::MdrunTestFixtureBase::TearDownTestSuite()'],110 ········['../classgmx_1_1test_1_1MdrunTestFixtureBase.xhtml#aeb3adf1e5777af74e64006f41c7ed0fd',·1,·'gmx::test::MdrunTestFixtureBase::TearDownTestSuite()'],
111 ········['../classanonymous__namespace_02domain__decomposition_8cpp_03_1_1DomDecSpecialCasesTest.xhtml#a1f99d295d63d1aa9dfd1dde3aa1300ad',·1,·'anonymous_namespace{domain_decomposition.cpp}::DomDecSpecialCasesTest::TearDownTestSuite()']111 ········['../classgmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03_1_1PmeTest.xhtml#a96d5a35582f00b8736e036fc362034d0',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest::TearDownTestSuite()']
112 ····]],112 ····]],
113 ····['temp_79',·['temp',·['../structgmx__repl__ex.xhtml#af483c0a60b6afdfe8c804ca5b1d58e55',·1,·'gmx_repl_ex']]],113 ····['temp_79',·['temp',·['../structgmx__repl__ex.xhtml#af483c0a60b6afdfe8c804ca5b1d58e55',·1,·'gmx_repl_ex']]],
114 ····['temperature_20manager_80',·['Reference·temperature·manager',·['../page_modularsimulator.xhtml#autotoc_md48',·1,·'']]],114 ····['temperature_20manager_80',·['Reference·temperature·manager',·['../page_modularsimulator.xhtml#autotoc_md48',·1,·'']]],
115 ····['temperature_5f_81',·['temperature_',·['../classgmx_1_1anonymous__namespace_02updategroups_8cpp_03_1_1UpdateGroupsTest.xhtml#afde88fe355afe19ab311e06d4ed1284b',·1,·'gmx::anonymous_namespace{updategroups.cpp}::UpdateGroupsTest']]],115 ····['temperature_5f_81',·['temperature_',·['../classgmx_1_1anonymous__namespace_02updategroups_8cpp_03_1_1UpdateGroupsTest.xhtml#afde88fe355afe19ab311e06d4ed1284b',·1,·'gmx::anonymous_namespace{updategroups.cpp}::UpdateGroupsTest']]],
116 ····['temperaturecoupling_82',·['TemperatureCoupling',·['../md__enums_8h.xhtml#a3ee2807ffc53ebc379b7a3ecb3818408',·1,·'md_enums.h']]],116 ····['temperaturecoupling_82',·['TemperatureCoupling',·['../md__enums_8h.xhtml#a3ee2807ffc53ebc379b7a3ecb3818408',·1,·'md_enums.h']]],
117 ····['temperaturecouplingdata_83',·['TemperatureCouplingData',·['../structgmx_1_1TemperatureCouplingData.xhtml',·1,·'gmx']]],117 ····['temperaturecouplingdata_83',·['TemperatureCouplingData',·['../structgmx_1_1TemperatureCouplingData.xhtml',·1,·'gmx']]],
118 ····['temperaturecouplingintegral_84',·['temperatureCouplingIntegral',·['../structgmx_1_1TemperatureCouplingData.xhtml#a160a9d2cf7c540ac11cbceaddf02ef3b',·1,·'gmx::TemperatureCouplingData']]],118 ····['temperaturecouplingintegral_84',·['temperatureCouplingIntegral',·['../structgmx_1_1TemperatureCouplingData.xhtml#a160a9d2cf7c540ac11cbceaddf02ef3b',·1,·'gmx::TemperatureCouplingData']]],
Offset 121, 16 lines modifiedOffset 121, 16 lines modified
121 ····['template_2ecpp_87',·['template.cpp',·['../template_8cpp.xhtml',·1,·'']]],121 ····['template_2ecpp_87',·['template.cpp',·['../template_8cpp.xhtml',·1,·'']]],
122 ····['template_5fmp_2eh_88',·['template_mp.h',·['../template__mp_8h.xhtml',·1,·'']]],122 ····['template_5fmp_2eh_88',·['template_mp.h',·['../template__mp_8h.xhtml',·1,·'']]],
123 ····['tensors_89',·['tensors',·['../classgmx_1_1CorrelationGrid.xhtml#aa4df66d017f66818e229b74c4723fd28',·1,·'gmx::CorrelationGrid']]],123 ····['tensors_89',·['tensors',·['../classgmx_1_1CorrelationGrid.xhtml#aa4df66d017f66818e229b74c4723fd28',·1,·'gmx::CorrelationGrid']]],
124 ····['tensorsize_90',·['tensorSize',·['../classgmx_1_1CorrelationGrid.xhtml#a65bdc218971f863c4d9078853c2da583',·1,·'gmx::CorrelationGrid']]],124 ····['tensorsize_90',·['tensorSize',·['../classgmx_1_1CorrelationGrid.xhtml#a65bdc218971f863c4d9078853c2da583',·1,·'gmx::CorrelationGrid']]],
125 ····['term_91',·['term',·['../structgmx__enerdata__t.xhtml#a71d182cf4964950e8732a79dbc3977d2',·1,·'gmx_enerdata_t']]],125 ····['term_91',·['term',·['../structgmx__enerdata__t.xhtml#a71d182cf4964950e8732a79dbc3977d2',·1,·'gmx_enerdata_t']]],
126 ····['terminatable_92',·['terminatable',·['../structgmx_1_1ImdOptions.xhtml#a1ab11b2738806dede49273afe379406c',·1,·'gmx::ImdOptions']]],126 ····['terminatable_92',·['terminatable',·['../structgmx_1_1ImdOptions.xhtml#a1ab11b2738806dede49273afe379406c',·1,·'gmx::ImdOptions']]],
127 ····['termination_2ecpp_93',·['termination.cpp',·['../termination_8cpp.xhtml',·1,·'']]],127 ····['termination_2ecpp_93',·['termination.cpp',·['../termination_8cpp.xhtml',·1,·'']]],
 128 ····['terminationhelper_94',·['terminationhelper',·['../classgmx_1_1test_1_1TerminationHelper.xhtml',·1,·'gmx::test::TerminationHelper'],
128 ····['terminationhelper_94',·['terminationhelper',·['../classgmx_1_1test_1_1TerminationHelper.xhtml#ab0e320cde8115bd25fd3a9bbc201f5f9',·1,·'gmx::test::TerminationHelper::TerminationHelper()'],129 ········['../classgmx_1_1test_1_1TerminationHelper.xhtml#ab0e320cde8115bd25fd3a9bbc201f5f9',·1,·'gmx::test::TerminationHelper::TerminationHelper()']
129 ········['../classgmx_1_1test_1_1TerminationHelper.xhtml',·1,·'gmx::test::TerminationHelper'] 
130 ····]],130 ····]],
131 ····['terminationhelper_2ecpp_95',·['terminationhelper.cpp',·['../terminationhelper_8cpp.xhtml',·1,·'']]],131 ····['terminationhelper_2ecpp_95',·['terminationhelper.cpp',·['../terminationhelper_8cpp.xhtml',·1,·'']]],
132 ····['terminationhelper_2eh_96',·['terminationhelper.h',·['../terminationhelper_8h.xhtml',·1,·'']]],132 ····['terminationhelper_2eh_96',·['terminationhelper.h',·['../terminationhelper_8h.xhtml',·1,·'']]],
133 ····['termisenergy_97',·['termIsEnergy',·['../classgmx_1_1EnergyTerm.xhtml#a3f8aa0a69cc8255a207828ddc2e163f9',·1,·'gmx::EnergyTerm']]],133 ····['termisenergy_97',·['termIsEnergy',·['../classgmx_1_1EnergyTerm.xhtml#a3f8aa0a69cc8255a207828ddc2e163f9',·1,·'gmx::EnergyTerm']]],
134 ····['termmagnitude_98',·['termMagnitude',·['../classgmx_1_1test_1_1FloatingPointDifference.xhtml#aa1ac488617b591beecc6c2a4fb424f08',·1,·'gmx::test::FloatingPointDifference']]],134 ····['termmagnitude_98',·['termMagnitude',·['../classgmx_1_1test_1_1FloatingPointDifference.xhtml#aa1ac488617b591beecc6c2a4fb424f08',·1,·'gmx::test::FloatingPointDifference']]],
135 ····['test_99',·['test',·['../classgmx_1_1FlagsTemplate.xhtml#a0b5f21f29024c8f94287dba3ac72340a',·1,·'gmx::FlagsTemplate']]],135 ····['test_99',·['test',·['../classgmx_1_1FlagsTemplate.xhtml#a0b5f21f29024c8f94287dba3ac72340a',·1,·'gmx::FlagsTemplate']]],
136 ····['test_20utilities_100',·['Integration·test·utilities',·['../group__module__mdrun__integration__tests.xhtml',·1,·'']]],136 ····['test_20utilities_100',·['Integration·test·utilities',·['../group__module__mdrun__integration__tests.xhtml',·1,·'']]],
Offset 149, 44 lines modifiedOffset 149, 44 lines modified
149 ····['testagainstreferencedata_113',·['testAgainstReferenceData',·['../classgmx_1_1test_1_1anonymous__namespace_02leapfrog_8cpp_03_1_1LeapFrogTest.xhtml#ad1aa6ce337261adfb963124ba3802efb',·1,·'gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTest']]],149 ····['testagainstreferencedata_113',·['testAgainstReferenceData',·['../classgmx_1_1test_1_1anonymous__namespace_02leapfrog_8cpp_03_1_1LeapFrogTest.xhtml#ad1aa6ce337261adfb963124ba3802efb',·1,·'gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTest']]],
150 ····['testarrayrefs_2eh_114',·['testarrayrefs.h',·['../testarrayrefs_8h.xhtml',·1,·'']]],150 ····['testarrayrefs_2eh_114',·['testarrayrefs.h',·['../testarrayrefs_8h.xhtml',·1,·'']]],
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189 ····['testfileoutputredirector_132',·['TestFileOutputRedirector',·['../classgmx_1_1test_1_1TestFileOutputRedirector.xhtml',·1,·'gmx::test']]],189 ····['testfileoutputredirector_132',·['TestFileOutputRedirector',·['../classgmx_1_1test_1_1TestFileOutputRedirector.xhtml',·1,·'gmx::test']]],
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57 ····['unpackrecvbufkernel_34',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],57 ····['unpackrecvbufkernel_34',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],
58 ····['unpaddedarrayref_35',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],58 ····['unpaddedarrayref_35',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],
59 ····['unpaddedconstarrayref_36',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],59 ····['unpaddedconstarrayref_36',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],
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196 ····['usemdgpugraph_142',·['usemdgpugraph',·['../structgmx__pme__pp.xhtml#a5ca26c02e2042980d7262c36a11b41ae',·1,·'gmx_pme_pp::useMdGpuGraph'],196 ····['usemdgpugraph_142',·['usemdgpugraph',·['../structgmx__pme__pp.xhtml#a5ca26c02e2042980d7262c36a11b41ae',·1,·'gmx_pme_pp::useMdGpuGraph'],
197 ········['../classgmx_1_1SimulationWorkload.xhtml#a76cb5c0c6b1dcb6f85e381dfbfc5046f',·1,·'gmx::SimulationWorkload::useMdGpuGraph']197 ········['../classgmx_1_1SimulationWorkload.xhtml#a76cb5c0c6b1dcb6f85e381dfbfc5046f',·1,·'gmx::SimulationWorkload::useMdGpuGraph']
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199 ····['usemolpbc_5f_143',·['useMolPbc_',·['../structgmx_1_1DomainInfo.xhtml#a0be60b2e021896a2f0a40b1107a3bf61',·1,·'gmx::DomainInfo']]],199 ····['usemolpbc_5f_143',·['useMolPbc_',·['../structgmx_1_1DomainInfo.xhtml#a0be60b2e021896a2f0a40b1107a3bf61',·1,·'gmx::DomainInfo']]],
200 ····['usemts_144',·['useMts',·['../classgmx_1_1SimulationWorkload.xhtml#ac585c3fa9df3937cb8ae629aa07df131',·1,·'gmx::SimulationWorkload']]],200 ····['usemts_144',·['useMts',·['../classgmx_1_1SimulationWorkload.xhtml#ac585c3fa9df3937cb8ae629aa07df131',·1,·'gmx::SimulationWorkload']]],
201 ····['usendxfromdatabase_145',·['useNdxFromDatabase',·['../classgmx_1_1test_1_1SimulationRunner.xhtml#a138218ca058abe7950f5bf9a5b30b0f7',·1,·'gmx::test::SimulationRunner']]],201 ····['usendxfromdatabase_145',·['useNdxFromDatabase',·['../classgmx_1_1test_1_1SimulationRunner.xhtml#a138218ca058abe7950f5bf9a5b30b0f7',·1,·'gmx::test::SimulationRunner']]],
202 ····['usenvshmem_146',·['usenvshmem',·['../classgmx_1_1SimulationWorkload.xhtml#ac092afa60701acf7cdcb00032c48172f',·1,·'gmx::SimulationWorkload::useNvshmem'],202 ····['usenvshmem_146',·['usenvshmem',·['../structPmeGpuKernelParamsBase.xhtml#a3d2ccf4da28abf4f9b7c7105413f31a3',·1,·'PmeGpuKernelParamsBase::useNvshmem'],
203 ········['../structgmx__pme__pp.xhtml#ab6ada3585bcb5d11417e20579c9842bd',·1,·'gmx_pme_pp::useNvshmem'],203 ········['../structgmx__pme__pp.xhtml#ab6ada3585bcb5d11417e20579c9842bd',·1,·'gmx_pme_pp::useNvshmem'],
204 ········['../structPmeGpuKernelParamsBase.xhtml#a3d2ccf4da28abf4f9b7c7105413f31a3',·1,·'PmeGpuKernelParamsBase::useNvshmem']204 ········['../classgmx_1_1SimulationWorkload.xhtml#ac092afa60701acf7cdcb00032c48172f',·1,·'gmx::SimulationWorkload::useNvshmem']
205 ····]],205 ····]],
206 ····['useonlymtscombinedforcebuffer_147',·['useOnlyMtsCombinedForceBuffer',·['../classgmx_1_1StepWorkload.xhtml#a457f1f1072fc3c9c0f5fb089b92f5f90',·1,·'gmx::StepWorkload']]],206 ····['useonlymtscombinedforcebuffer_147',·['useOnlyMtsCombinedForceBuffer',·['../classgmx_1_1StepWorkload.xhtml#a457f1f1072fc3c9c0f5fb089b92f5f90',·1,·'gmx::StepWorkload']]],
207 ····['usepipeline_148',·['usePipeline',·['../structPmeGpuKernelParamsBase.xhtml#a489a09754001d0776d2dca26bb1b938d',·1,·'PmeGpuKernelParamsBase']]],207 ····['usepipeline_148',·['usePipeline',·['../structPmeGpuKernelParamsBase.xhtml#a489a09754001d0776d2dca26bb1b938d',·1,·'PmeGpuKernelParamsBase']]],
208 ····['usercoordunitstointernal_149',·['userCoordUnitsToInternal',·['../structgmx_1_1DimParams_1_1PullDimParams.xhtml#ab4dac5ae0abd7d7ac4abce1a3ebb3f08',·1,·'gmx::DimParams::PullDimParams']]],208 ····['usercoordunitstointernal_149',·['userCoordUnitsToInternal',·['../structgmx_1_1DimParams_1_1PullDimParams.xhtml#ab4dac5ae0abd7d7ac4abce1a3ebb3f08',·1,·'gmx::DimParams::PullDimParams']]],
209 ····['usercoordunitstointernal_5f_150',·['userCoordUnitsToInternal_',·['../structgmx_1_1DimParams.xhtml#a6bc5656f8c83287c262adf1ca79b1515',·1,·'gmx::DimParams']]],209 ····['usercoordunitstointernal_5f_150',·['userCoordUnitsToInternal_',·['../structgmx_1_1DimParams.xhtml#a6bc5656f8c83287c262adf1ca79b1515',·1,·'gmx::DimParams']]],
210 ····['userdefinedfloat_5f_151',·['userDefinedFloat_',·['../structgmx_1_1MrcDensityMapHeader.xhtml#abec7c46e44fcc58659f2e4f08ce3ca69',·1,·'gmx::MrcDensityMapHeader']]],210 ····['userdefinedfloat_5f_151',·['userDefinedFloat_',·['../structgmx_1_1MrcDensityMapHeader.xhtml#abec7c46e44fcc58659f2e4f08ce3ca69',·1,·'gmx::MrcDensityMapHeader']]],
211 ····['usergpuids_2ecpp_152',·['usergpuids.cpp',·['../usergpuids_8cpp.xhtml',·1,·'(Global·Namespace)'],211 ····['usergpuids_2ecpp_152',·['usergpuids.cpp',·['../tests_2usergpuids_8cpp.xhtml',·1,·'(Global·Namespace)'],
212 ········['../tests_2usergpuids_8cpp.xhtml',·1,·'(Global·Namespace)']212 ········['../usergpuids_8cpp.xhtml',·1,·'(Global·Namespace)']
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215 ····['usergputaskassignment_154',·['userGpuTaskAssignment',·['../structgmx__hw__opt__t.xhtml#aa385ff3c0e1cad123e457fa57756f6d9',·1,·'gmx_hw_opt_t']]],215 ····['usergputaskassignment_154',·['userGpuTaskAssignment',·['../structgmx__hw__opt__t.xhtml#aa385ff3c0e1cad123e457fa57756f6d9',·1,·'gmx_hw_opt_t']]],
216 ····['userinputerror_155',·['userinputerror',·['../classgmx_1_1UserInputError.xhtml#a07ae9dc1612508d54e18079cebdc4316',·1,·'gmx::UserInputError::UserInputError()'],216 ····['userinputerror_155',·['userinputerror',·['../classgmx_1_1UserInputError.xhtml#a07ae9dc1612508d54e18079cebdc4316',·1,·'gmx::UserInputError::UserInputError()'],
217 ········['../classgmx_1_1UserInputError.xhtml',·1,·'gmx::UserInputError']217 ········['../classgmx_1_1UserInputError.xhtml',·1,·'gmx::UserInputError']
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219 ····['userinputtest_156',·['UserInputTest',·['../classgmx_1_1test_1_1UserInputTest.xhtml',·1,·'gmx::test']]],219 ····['userinputtest_156',·['UserInputTest',·['../classgmx_1_1test_1_1UserInputTest.xhtml',·1,·'gmx::test']]],
220 ····['usesimd_157',·['useSimd',·['../classgmx_1_1SettleData.xhtml#a6f48e1b037af7f441ccf2119bc5a3d21',·1,·'gmx::SettleData']]],220 ····['usesimd_157',·['useSimd',·['../classgmx_1_1SettleData.xhtml#a6f48e1b037af7f441ccf2119bc5a3d21',·1,·'gmx::SettleData']]],
221 ····['usestringasmdpfile_158',·['usestringasmdpfile',·['../classgmx_1_1test_1_1SimulationRunner.xhtml#a75fa0a10a94033d78afcbbcb871df72d',·1,·'gmx::test::SimulationRunner::useStringAsMdpFile(const·char·*mdpString)'], 
222 ········['../classgmx_1_1test_1_1SimulationRunner.xhtml#accfb15b5d82dd09daa6b25b2e0c14846',·1,·'gmx::test::SimulationRunner::useStringAsMdpFile(const·std::string·&amp;mdpString)']221 ····['usestringasmdpfile_158',·['usestringasmdpfile',·['../classgmx_1_1test_1_1SimulationRunner.xhtml#accfb15b5d82dd09daa6b25b2e0c14846',·1,·'gmx::test::SimulationRunner::useStringAsMdpFile(const·std::string·&amp;mdpString)'],
 222 ········['../classgmx_1_1test_1_1SimulationRunner.xhtml#a75fa0a10a94033d78afcbbcb871df72d',·1,·'gmx::test::SimulationRunner::useStringAsMdpFile(const·char·*mdpString)']
223 ····]],223 ····]],
224 ····['usestringasndxfile_159',·['useStringAsNdxFile',·['../classgmx_1_1test_1_1SimulationRunner.xhtml#a4af0a2fa669b9b49dbe8e31baa96ab8c',·1,·'gmx::test::SimulationRunner']]],224 ····['usestringasndxfile_159',·['useStringAsNdxFile',·['../classgmx_1_1test_1_1SimulationRunner.xhtml#a4af0a2fa669b9b49dbe8e31baa96ab8c',·1,·'gmx::test::SimulationRunner']]],
225 ····['usetabulatedewaldcorr_160',·['useTabulatedEwaldCorr',·['../structNbnxm_1_1KernelBenchOptions.xhtml#a14fa358454fb18a2f9975cb463b9ffbd',·1,·'Nbnxm::KernelBenchOptions']]],225 ····['usetabulatedewaldcorr_160',·['useTabulatedEwaldCorr',·['../structNbnxm_1_1KernelBenchOptions.xhtml#a14fa358454fb18a2f9975cb463b9ffbd',·1,·'Nbnxm::KernelBenchOptions']]],
226 ····['usetiming_161',·['useTiming',·['../structPmeGpuSpecific.xhtml#ad6bbbf827e5b002605a8de3625eb4e46',·1,·'PmeGpuSpecific']]],226 ····['usetiming_161',·['useTiming',·['../structPmeGpuSpecific.xhtml#ad6bbbf827e5b002605a8de3625eb4e46',·1,·'PmeGpuSpecific']]],
227 ····['usetopg96andndxfromdatabase_162',·['useTopG96AndNdxFromDatabase',·['../classgmx_1_1test_1_1SimulationRunner.xhtml#acfd69f53927124bfdee2effd375fc9bd',·1,·'gmx::test::SimulationRunner']]],227 ····['usetopg96andndxfromdatabase_162',·['useTopG96AndNdxFromDatabase',·['../classgmx_1_1test_1_1SimulationRunner.xhtml#acfd69f53927124bfdee2effd375fc9bd',·1,·'gmx::test::SimulationRunner']]],
228 ····['usetopgroandmdpfromfeptestdatabase_163',·['useTopGroAndMdpFromFepTestDatabase',·['../classgmx_1_1test_1_1SimulationRunner.xhtml#a5c4e09317af5dad88cde39c19402fed3',·1,·'gmx::test::SimulationRunner']]],228 ····['usetopgroandmdpfromfeptestdatabase_163',·['useTopGroAndMdpFromFepTestDatabase',·['../classgmx_1_1test_1_1SimulationRunner.xhtml#a5c4e09317af5dad88cde39c19402fed3',·1,·'gmx::test::SimulationRunner']]],
229 ····['usetopgroandndxfromdatabase_164',·['useTopGroAndNdxFromDatabase',·['../classgmx_1_1test_1_1SimulationRunner.xhtml#aa46bb4573ffe549cc7f4ee67172d0594',·1,·'gmx::test::SimulationRunner']]],229 ····['usetopgroandndxfromdatabase_164',·['useTopGroAndNdxFromDatabase',·['../classgmx_1_1test_1_1SimulationRunner.xhtml#aa46bb4573ffe549cc7f4ee67172d0594',·1,·'gmx::test::SimulationRunner']]],
Offset 244, 12 lines modifiedOffset 244, 12 lines modified
244 ····['utilities_2eh_179',·['utilities.h',·['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)'],244 ····['utilities_2eh_179',·['utilities.h',·['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)'],
245 ········['../src_2gromacs_2mimic_2utilities_8h.xhtml',·1,·'(Global·Namespace)']245 ········['../src_2gromacs_2mimic_2utilities_8h.xhtml',·1,·'(Global·Namespace)']
246 ····]],246 ····]],
247 ····['utility_180',·['Low-Level·Utilities·(utility)',·['../group__module__utility.xhtml',·1,·'']]],247 ····['utility_180',·['Low-Level·Utilities·(utility)',·['../group__module__utility.xhtml',·1,·'']]],
248 ····['utility_20functionality_181',·['Implementation·of·mdrun·utility·functionality',·['../group__module__mdrunutility.xhtml',·1,·'']]],248 ····['utility_20functionality_181',·['Implementation·of·mdrun·utility·functionality',·['../group__module__mdrunutility.xhtml',·1,·'']]],
249 ····['utility_20modules_182',·['Utility·Modules',·['../group__group__utilitymodules.xhtml',·1,·'']]],249 ····['utility_20modules_182',·['Utility·Modules',·['../group__group__utilitymodules.xhtml',·1,·'']]],
250 ····['utility_2ecpp_183',·['utility.cpp',·['../utility_8cpp.xhtml',·1,·'']]],250 ····['utility_2ecpp_183',·['utility.cpp',·['../utility_8cpp.xhtml',·1,·'']]],
251 ····['utility_2eh_184',·['utility.h',·['../utility_8h.xhtml',·1,·'(Global·Namespace)'],251 ····['utility_2eh_184',·['utility.h',·['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)'],
252 ········['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)'], 
253 ········['../compat_2utility_8h.xhtml',·1,·'(Global·Namespace)']252 ········['../compat_2utility_8h.xhtml',·1,·'(Global·Namespace)'],
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255 ];255 ];
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471 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']471 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']
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474 ····['analysisdataaveragemodule_286',·['AnalysisDataAverageModule',·['../classgmx_1_1AnalysisDataAverageModule.xhtml',·1,·'gmx']]],474 ····['analysisdataaveragemodule_286',·['AnalysisDataAverageModule',·['../classgmx_1_1AnalysisDataAverageModule.xhtml',·1,·'gmx']]],
475 ····['analysisdataaveragemodulepointer_287',·['AnalysisDataAverageModulePointer',·['../namespacegmx.xhtml#a87e4f5152c736da50dd59275f423a7a3',·1,·'gmx']]],475 ····['analysisdataaveragemodulepointer_287',·['AnalysisDataAverageModulePointer',·['../namespacegmx.xhtml#a87e4f5152c736da50dd59275f423a7a3',·1,·'gmx']]],
476 ····['analysisdatabinaveragemodule_288',·['analysisdatabinaveragemodule',·['../classgmx_1_1AnalysisDataBinAverageModule.xhtml#ae68db8d9759911b2a903e2918c471771',·1,·'gmx::AnalysisDataBinAverageModule::AnalysisDataBinAverageModule()'],476 ····['analysisdatabinaveragemodule_288',·['analysisdatabinaveragemodule',·['../classgmx_1_1AnalysisDataBinAverageModule.xhtml#a6912a0b42cf2d67d73659b8f2d4a5997',·1,·'gmx::AnalysisDataBinAverageModule::AnalysisDataBinAverageModule()'],
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477 ········['../classgmx_1_1AnalysisDataBinAverageModule.xhtml',·1,·'gmx::AnalysisDataBinAverageModule'],478 ········['../classgmx_1_1AnalysisDataBinAverageModule.xhtml',·1,·'gmx::AnalysisDataBinAverageModule']
478 ········['../classgmx_1_1AnalysisDataBinAverageModule.xhtml#a6912a0b42cf2d67d73659b8f2d4a5997',·1,·'gmx::AnalysisDataBinAverageModule::AnalysisDataBinAverageModule()'] 
479 ····]],479 ····]],
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481 ····['analysisdatadisplacementmodule_290',·['AnalysisDataDisplacementModule',·['../classgmx_1_1AnalysisDataDisplacementModule.xhtml',·1,·'gmx']]],481 ····['analysisdatadisplacementmodule_290',·['AnalysisDataDisplacementModule',·['../classgmx_1_1AnalysisDataDisplacementModule.xhtml',·1,·'gmx']]],
482 ····['analysisdatadisplacementmodulepointer_291',·['AnalysisDataDisplacementModulePointer',·['../namespacegmx.xhtml#aa5dd79fb2cd906b55b386b64084543b9',·1,·'gmx']]],482 ····['analysisdatadisplacementmodulepointer_291',·['AnalysisDataDisplacementModulePointer',·['../namespacegmx.xhtml#aa5dd79fb2cd906b55b386b64084543b9',·1,·'gmx']]],
483 ····['analysisdataframeaveragemodule_292',·['AnalysisDataFrameAverageModule',·['../classgmx_1_1AnalysisDataFrameAverageModule.xhtml',·1,·'gmx']]],483 ····['analysisdataframeaveragemodule_292',·['AnalysisDataFrameAverageModule',·['../classgmx_1_1AnalysisDataFrameAverageModule.xhtml',·1,·'gmx']]],
484 ····['analysisdataframeaveragemodulepointer_293',·['AnalysisDataFrameAverageModulePointer',·['../namespacegmx.xhtml#ad580f7f69fb3536c9cba722587e77e49',·1,·'gmx']]],484 ····['analysisdataframeaveragemodulepointer_293',·['AnalysisDataFrameAverageModulePointer',·['../namespacegmx.xhtml#ad580f7f69fb3536c9cba722587e77e49',·1,·'gmx']]],
485 ····['analysisdataframeaverager_294',·['AnalysisDataFrameAverager',·['../classgmx_1_1AnalysisDataFrameAverager.xhtml',·1,·'gmx']]],485 ····['analysisdataframeaverager_294',·['AnalysisDataFrameAverager',·['../classgmx_1_1AnalysisDataFrameAverager.xhtml',·1,·'gmx']]],
486 ····['analysisdataframebuilderpointer_295',·['AnalysisDataFrameBuilderPointer',·['../namespacegmx_1_1internal.xhtml#a10329904859eb4035ac1a2464a9745b2',·1,·'gmx::internal']]],486 ····['analysisdataframebuilderpointer_295',·['AnalysisDataFrameBuilderPointer',·['../namespacegmx_1_1internal.xhtml#a10329904859eb4035ac1a2464a9745b2',·1,·'gmx::internal']]],
487 ····['analysisdataframeheader_296',·['analysisdataframeheader',·['../classgmx_1_1AnalysisDataFrameHeader.xhtml#a3043afa474c20efb902f465312dcbaaf',·1,·'gmx::AnalysisDataFrameHeader::AnalysisDataFrameHeader()'],487 ····['analysisdataframeheader_296',·['analysisdataframeheader',·['../classgmx_1_1AnalysisDataFrameHeader.xhtml',·1,·'gmx::AnalysisDataFrameHeader'],
488 ········['../classgmx_1_1AnalysisDataFrameHeader.xhtml',·1,·'gmx::AnalysisDataFrameHeader'],488 ········['../classgmx_1_1AnalysisDataFrameHeader.xhtml#a3043afa474c20efb902f465312dcbaaf',·1,·'gmx::AnalysisDataFrameHeader::AnalysisDataFrameHeader(int·index,·real·x,·real·dx)'],
489 ········['../classgmx_1_1AnalysisDataFrameHeader.xhtml#a8ea37d69d5624281274d3c7c2693d2ce',·1,·'gmx::AnalysisDataFrameHeader::AnalysisDataFrameHeader()']489 ········['../classgmx_1_1AnalysisDataFrameHeader.xhtml#a8ea37d69d5624281274d3c7c2693d2ce',·1,·'gmx::AnalysisDataFrameHeader::AnalysisDataFrameHeader()']
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491 ····['analysisdataframelocaldata_297',·['analysisdataframelocaldata',·['../classgmx_1_1AnalysisDataFrameLocalData.xhtml#a6a7413a28dfbc995e8bbfe4aed89eee8',·1,·'gmx::AnalysisDataFrameLocalData::AnalysisDataFrameLocalData()'],492 ········['../classgmx_1_1AnalysisDataFrameLocalData.xhtml#a6a7413a28dfbc995e8bbfe4aed89eee8',·1,·'gmx::AnalysisDataFrameLocalData::AnalysisDataFrameLocalData()']
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504 ········['../classgmx_1_1AnalysisDataFrameRef.xhtml#ae66108d9c0c62be929140cdcd2a45bf6',·1,·'gmx::AnalysisDataFrameRef::AnalysisDataFrameRef(const·AnalysisDataFrameHeader·&amp;header,·const·std::vector&lt;·AnalysisDataValue·&gt;·&amp;values,·const·std::vector&lt;·AnalysisDataPointSetInfo·&gt;·&amp;pointSets)'],505 ········['../classgmx_1_1AnalysisDataFrameRef.xhtml#ae66108d9c0c62be929140cdcd2a45bf6',·1,·'gmx::AnalysisDataFrameRef::AnalysisDataFrameRef(const·AnalysisDataFrameHeader·&amp;header,·const·std::vector&lt;·AnalysisDataValue·&gt;·&amp;values,·const·std::vector&lt;·AnalysisDataPointSetInfo·&gt;·&amp;pointSets)'],
505 ········['../classgmx_1_1AnalysisDataFrameRef.xhtml#a8f4388d83a1cc84f4451465ce9b7bfda',·1,·'gmx::AnalysisDataFrameRef::AnalysisDataFrameRef(const·AnalysisDataFrameRef·&amp;frame,·int·firstColumn,·int·columnCount)'],506 ········['../classgmx_1_1AnalysisDataFrameRef.xhtml#a8f4388d83a1cc84f4451465ce9b7bfda',·1,·'gmx::AnalysisDataFrameRef::AnalysisDataFrameRef(const·AnalysisDataFrameRef·&amp;frame,·int·firstColumn,·int·columnCount)']
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520 ····['analysisdataparalleloptions_311',·['analysisdataparalleloptions',·['../classgmx_1_1AnalysisDataParallelOptions.xhtml',·1,·'gmx::AnalysisDataParallelOptions'],520 ····['analysisdataparalleloptions_311',·['analysisdataparalleloptions',·['../classgmx_1_1AnalysisDataParallelOptions.xhtml',·1,·'gmx::AnalysisDataParallelOptions'],
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522 ········['../classgmx_1_1AnalysisDataParallelOptions.xhtml#a0f8b423010d417dc55f36968bed596ec',·1,·'gmx::AnalysisDataParallelOptions::AnalysisDataParallelOptions(int·parallelizationFactor)']521 ········['../classgmx_1_1AnalysisDataParallelOptions.xhtml#a0f8b423010d417dc55f36968bed596ec',·1,·'gmx::AnalysisDataParallelOptions::AnalysisDataParallelOptions(int·parallelizationFactor)'],
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528 ····['analysisdataplotsettings_314',·['analysisdataplotsettings',·['../classgmx_1_1AnalysisDataPlotSettings.xhtml',·1,·'gmx::AnalysisDataPlotSettings'],528 ····['analysisdataplotsettings_314',·['analysisdataplotsettings',·['../classgmx_1_1AnalysisDataPlotSettings.xhtml#af21ab69bb96cd7e213793d8fed58e0b9',·1,·'gmx::AnalysisDataPlotSettings::AnalysisDataPlotSettings()'],
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533 ········['../classgmx_1_1AnalysisDataPointSetRef.xhtml#a40431f0da6edf4c5eb94550b02301144',·1,·'gmx::AnalysisDataPointSetRef::AnalysisDataPointSetRef(const·AnalysisDataFrameHeader·&amp;header,·const·std::vector&lt;·AnalysisDataValue·&gt;·&amp;values)'],533 ········['../classgmx_1_1AnalysisDataPointSetRef.xhtml#a40431f0da6edf4c5eb94550b02301144',·1,·'gmx::AnalysisDataPointSetRef::AnalysisDataPointSetRef(const·AnalysisDataFrameHeader·&amp;header,·const·std::vector&lt;·AnalysisDataValue·&gt;·&amp;values)'],
534 ········['../classgmx_1_1AnalysisDataPointSetRef.xhtml#acf1a884520dfa96f11dd26388a7f6d94',·1,·'gmx::AnalysisDataPointSetRef::AnalysisDataPointSetRef(const·AnalysisDataFrameHeader·&amp;header,·const·AnalysisDataPointSetInfo·&amp;pointSetInfo,·const·AnalysisDataValuesRef·&amp;values)']534 ········['../classgmx_1_1AnalysisDataPointSetRef.xhtml#a5e36b6247422e54452a5553fb39aabb3',·1,·'gmx::AnalysisDataPointSetRef::AnalysisDataPointSetRef(const·AnalysisDataPointSetRef·&amp;points,·int·firstColumn,·int·columnCount)']
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540 ····['analysisdatasets_5f_318',·['analysisDatasets_',·['../classgmx_1_1TrajectoryAnalysisModule_1_1Impl.xhtml#a8fbdf1599091bec1083156b6b898ef1c',·1,·'gmx::TrajectoryAnalysisModule::Impl']]],540 ····['analysisdatasets_5f_318',·['analysisDatasets_',·['../classgmx_1_1TrajectoryAnalysisModule_1_1Impl.xhtml#a8fbdf1599091bec1083156b6b898ef1c',·1,·'gmx::TrajectoryAnalysisModule::Impl']]],
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950 ····['asconstview_574',·['asConstView',·['../classgmx_1_1MultiDimArray.xhtml#a5dd95fca66f9da9723365d7bbe9df05a',·1,·'gmx::MultiDimArray']]],950 ····['asconstview_574',·['asConstView',·['../classgmx_1_1MultiDimArray.xhtml#a5dd95fca66f9da9723365d7bbe9df05a',·1,·'gmx::MultiDimArray']]],
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953 ········['../namespacegmx.xhtml#a790f4239e154b040ddbcef4a1d3122ae',·1,·'gmx::asGenericFloat3Pointer(const·T·*in)'],952 ········['../namespacegmx.xhtml#a790f4239e154b040ddbcef4a1d3122ae',·1,·'gmx::asGenericFloat3Pointer(const·T·*in)'],
954 ········['../namespacegmx.xhtml#a7cf8c0c79ed50d630c676a108cff651e',·1,·'gmx::asGenericFloat3Pointer(T·*in)']953 ········['../namespacegmx.xhtml#a61d1fa4d0073e932d5ea53fd4ec968e9',·1,·'gmx::asGenericFloat3Pointer(C·&amp;in)'],
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957 ········['../namespacegmx.xhtml#a3d5120df9c0bf437e64c806a7cfdad02',·1,·'gmx::asin(float·x)'] 
958 ····]],958 ····]],
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961 ····['asparagraph_579',·['asParagraph',·['../classgmx_1_1LogEntryWriter.xhtml#ae57916f6fea855c4e7cd33e35a7cf17b',·1,·'gmx::LogEntryWriter']]],961 ····['asparagraph_579',·['asParagraph',·['../classgmx_1_1LogEntryWriter.xhtml#ae57916f6fea855c4e7cd33e35a7cf17b',·1,·'gmx::LogEntryWriter']]],
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964 ····['assert_5fno_5fthrow_5fgmx_582',·['ASSERT_NO_THROW_GMX',·['../group__module__testutils.xhtml#gafbd852cd87908495678c48118c02ee82',·1,·'testasserts.h']]],964 ····['assert_5fno_5fthrow_5fgmx_582',·['ASSERT_NO_THROW_GMX',·['../group__module__testutils.xhtml#gafbd852cd87908495678c48118c02ee82',·1,·'testasserts.h']]],
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966 ····['assert_5freal_5feq_584',·['ASSERT_REAL_EQ',·['../group__module__testutils.xhtml#gacb991b5a95254a4b350c2483fe115c0c',·1,·'testasserts.h']]],966 ····['assert_5freal_5feq_584',·['ASSERT_REAL_EQ',·['../group__module__testutils.xhtml#gacb991b5a95254a4b350c2483fe115c0c',·1,·'testasserts.h']]],
967 ····['assert_5freal_5feq_5ftol_585',·['ASSERT_REAL_EQ_TOL',·['../group__module__testutils.xhtml#ga6e4937301d5b94f07bb4d9fd71030555',·1,·'testasserts.h']]],967 ····['assert_5freal_5feq_5ftol_585',·['ASSERT_REAL_EQ_TOL',·['../group__module__testutils.xhtml#ga6e4937301d5b94f07bb4d9fd71030555',·1,·'testasserts.h']]],
968 ····['assert_5fthrow_5fgmx_586',·['ASSERT_THROW_GMX',·['../group__module__testutils.xhtml#ga5cd586713beef5aa3cf19b0ed2b3a269',·1,·'testasserts.h']]],968 ····['assert_5fthrow_5fgmx_586',·['ASSERT_THROW_GMX',·['../group__module__testutils.xhtml#ga5cd586713beef5aa3cf19b0ed2b3a269',·1,·'testasserts.h']]],
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62 ····['basenetwork_2eh_27',·['basenetwork.h',·['../basenetwork_8h.xhtml',·1,·'']]],62 ····['basenetwork_2eh_27',·['basenetwork.h',·['../basenetwork_8h.xhtml',·1,·'']]],
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70 ········['../classgmx_1_1basic__mdspan.xhtml#a3fb425dfe9f5d47d8575a3a5ffe15356',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan·&amp;other)·noexcept=default'],75 ········['../classgmx_1_1basic__mdspan.xhtml#a3fb425dfe9f5d47d8575a3a5ffe15356',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan·&amp;other)·noexcept=default'],
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73 ········['../classgmx_1_1basic__mdspan.xhtml#ad98e5109d35223338f274e3bdd850622',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&amp;m)·noexcept'], 
74 ········['../classgmx_1_1basic__mdspan.xhtml#a7c22975cf4760a9f66be3e20d83e1e39',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·std::array&lt;·ptrdiff_t,·extents_type::rank_dynamic()&gt;·&amp;dynamic_extents)'], 
75 ········['../classgmx_1_1basic__mdspan.xhtml#a023bf1df41290714a1eb67ee9a952ef0',·1,·'gmx::basic_mdspan::basic_mdspan()·noexcept'],77 ········['../classgmx_1_1basic__mdspan.xhtml#a023bf1df41290714a1eb67ee9a952ef0',·1,·'gmx::basic_mdspan::basic_mdspan()·noexcept'],
76 ········['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx::basic_mdspan&lt;·ElementType,·Extents,·LayoutPolicy,·AccessorPolicy·&gt;'],78 ········['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx::basic_mdspan&lt;·ElementType,·Extents,·LayoutPolicy,·AccessorPolicy·&gt;']
77 ········['../classgmx_1_1basic__mdspan.xhtml#a1af35e8aadb8ddbe4a239879e3db6238',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan&lt;·OtherElementType,·OtherExtents,·OtherLayoutPolicy,·OtherAccessor·&gt;·&amp;rhs)·noexcept'], 
78 ········['../classgmx_1_1basic__mdspan.xhtml#af91e1c5db6aa3eb085defcaf777c6fd3',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·IndexType...·DynamicExtents)·noexcept'] 
79 ····]],79 ····]],
80 ····['basic_5fmdspan_3c_20value_5ftype_2c_20dynamic_5fextents_5ftype_2c_20layout_5fright_20_3e_32',·['basic_mdspan&lt;·value_type,·dynamic_extents_type,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],80 ····['basic_5fmdspan_3c_20value_5ftype_2c_20dynamic_5fextents_5ftype_2c_20layout_5fright_20_3e_32',·['basic_mdspan&lt;·value_type,·dynamic_extents_type,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
81 ····['basic_5fmdspan_3c_20value_5ftype_2c_20extents_2c_20layout_5fright_20_3e_33',·['basic_mdspan&lt;·value_type,·Extents,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],81 ····['basic_5fmdspan_3c_20value_5ftype_2c_20extents_2c_20layout_5fright_20_3e_33',·['basic_mdspan&lt;·value_type,·Extents,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
82 ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_2c_20layout_5fright_20_3e_34',·['basic_mdspan&lt;·value_type,·gmx::extents,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],82 ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_2c_20layout_5fright_20_3e_34',·['basic_mdspan&lt;·value_type,·gmx::extents,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
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101 ········['../classgmx_1_1BasicVector.xhtml#a1d3608d65677e2aa992df4a2f209a7da',·1,·'gmx::BasicVector::BasicVector(BasicVector·&amp;&amp;src)·noexcept=default'],99 ········['../classgmx_1_1BasicVector.xhtml#a1d3608d65677e2aa992df4a2f209a7da',·1,·'gmx::BasicVector::BasicVector(BasicVector·&amp;&amp;src)·noexcept=default'],
102 ········['../classgmx_1_1BasicVector.xhtml',·1,·'gmx::BasicVector&lt;·ValueType·&gt;']100 ········['../classgmx_1_1BasicVector.xhtml',·1,·'gmx::BasicVector&lt;·ValueType·&gt;'],
 101 ········['../classgmx_1_1BasicVector.xhtml#a0770c51feab30c509deb6d9596222fb5',·1,·'gmx::BasicVector::BasicVector()'],
 102 ········['../classgmx_1_1BasicVector.xhtml#a537d03f84068abce7af6b63290f8841e',·1,·'gmx::BasicVector::BasicVector(ValueType·x,·ValueType·y,·ValueType·z)']
103 ····]],103 ····]],
104 ····['basicvector_3c_20double_20_3e_46',·['BasicVector&lt;·double·&gt;',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx']]],104 ····['basicvector_3c_20double_20_3e_46',·['BasicVector&lt;·double·&gt;',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx']]],
105 ····['basicvector_3c_20int_20_3e_47',·['BasicVector&lt;·int·&gt;',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx']]],105 ····['basicvector_3c_20int_20_3e_47',·['BasicVector&lt;·int·&gt;',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx']]],
106 ····['basicvector_3c_20real_20_3e_48',·['BasicVector&lt;·real·&gt;',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx']]],106 ····['basicvector_3c_20real_20_3e_48',·['BasicVector&lt;·real·&gt;',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx']]],
107 ····['bauto_49',·['bAuto',·['../structUmbrellaOptions.xhtml#a495f27b8e9cfb0ac6aa0c5a650eb54a6',·1,·'UmbrellaOptions']]],107 ····['bauto_49',·['bAuto',·['../structUmbrellaOptions.xhtml#a495f27b8e9cfb0ac6aa0c5a650eb54a6',·1,·'UmbrellaOptions']]],
108 ····['bb_50',·['bb',·['../structNbnxnPairlistCpuWork_1_1IClusterData.xhtml#a8e4ed09c1eda9ba3122e66f2bd659032',·1,·'NbnxnPairlistCpuWork::IClusterData']]],108 ····['bb_50',·['bb',·['../structNbnxnPairlistCpuWork_1_1IClusterData.xhtml#a8e4ed09c1eda9ba3122e66f2bd659032',·1,·'NbnxnPairlistCpuWork::IClusterData']]],
109 ····['bboolno_51',·['bBoolNo',·['../structgmx__sel__lexer__t.xhtml#a51c1565a9c7e67f715d28109b6a91489',·1,·'gmx_sel_lexer_t']]],109 ····['bboolno_51',·['bBoolNo',·['../structgmx__sel__lexer__t.xhtml#a51c1565a9c7e67f715d28109b6a91489',·1,·'gmx_sel_lexer_t']]],
Offset 125, 20 lines modifiedOffset 125, 20 lines modified
125 ····['bdebugmode_67',·['bDebugMode',·['../fatalerror_8h.xhtml#aeceaa87707ac5c2c96e224de90dd481c',·1,·'fatalerror.cpp']]],125 ····['bdebugmode_67',·['bDebugMode',·['../fatalerror_8h.xhtml#aeceaa87707ac5c2c96e224de90dd481c',·1,·'fatalerror.cpp']]],
126 ····['bdiscrete_68',·['bDiscrete',·['../structt__matrix.xhtml#a6ca5a8d5f5d4be235502f83ffac2586c',·1,·'t_matrix']]],126 ····['bdiscrete_68',·['bDiscrete',·['../structt__matrix.xhtml#a6ca5a8d5f5d4be235502f83ffac2586c',·1,·'t_matrix']]],
127 ····['bdotime_69',·['bDoTime',·['../structNbnxmGpu.xhtml#a1de4ad8bb7a72156331022911da91fb3',·1,·'NbnxmGpu']]],127 ····['bdotime_69',·['bDoTime',·['../structNbnxmGpu.xhtml#a1de4ad8bb7a72156331022911da91fb3',·1,·'NbnxmGpu']]],
128 ····['bdynamicbox_70',·['bDynamicBox',·['../structnbnxn__atomdata__t.xhtml#ae77b34a2c51cda08b6614469d056d29b',·1,·'nbnxn_atomdata_t']]],128 ····['bdynamicbox_70',·['bDynamicBox',·['../structnbnxn__atomdata__t.xhtml#ae77b34a2c51cda08b6614469d056d29b',·1,·'nbnxn_atomdata_t']]],
129 ····['becool_71',·['beCool',·['../namespacegmx_1_1anonymous__namespace_02coolstuff_8cpp_03.xhtml#a67229d8062fb466b5be7cb8bed125f1a',·1,·'gmx::anonymous_namespace{coolstuff.cpp}']]],129 ····['becool_71',·['beCool',·['../namespacegmx_1_1anonymous__namespace_02coolstuff_8cpp_03.xhtml#a67229d8062fb466b5be7cb8bed125f1a',·1,·'gmx::anonymous_namespace{coolstuff.cpp}']]],
130 ····['begin_72',·['begin',·['../classgmx_1_1Range.xhtml#a242b3517477cdd07a73a702f360f5b46',·1,·'gmx::Range::begin()'],130 ····['begin_72',·['begin',·['../classgmx_1_1Range.xhtml#a242b3517477cdd07a73a702f360f5b46',·1,·'gmx::Range::begin()'],
131 ········['../namespacegmx.xhtml#a636719700df07fe8736fa19bb12c29dd',·1,·'gmx::begin(MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],131 ········['../namespacegmx.xhtml#a636719700df07fe8736fa19bb12c29dd',·1,·'gmx::begin(MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],
132 ········['../namespacegmx.xhtml#a9fd99e24e163158545296b3f791b0ee8',·1,·'gmx::begin(const·BasicMdspan·&amp;basicMdspan)'], 
133 ········['../namespacegmx.xhtml#aaf0716c8ca857b1a8877fc94463b5850',·1,·'gmx::begin(const·MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],132 ········['../namespacegmx.xhtml#aaf0716c8ca857b1a8877fc94463b5850',·1,·'gmx::begin(const·MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],
 133 ········['../namespacegmx.xhtml#a9fd99e24e163158545296b3f791b0ee8',·1,·'gmx::begin(const·BasicMdspan·&amp;basicMdspan)'],
134 ········['../classgmx_1_1FixedCapacityVector.xhtml#a453e4185086abe32f76359d79e5df439',·1,·'gmx::FixedCapacityVector::begin()'],134 ········['../classgmx_1_1FixedCapacityVector.xhtml#a453e4185086abe32f76359d79e5df439',·1,·'gmx::FixedCapacityVector::begin()'],
135 ········['../structgmx_1_1EnumerationArray.xhtml#a4a2f5be2695dfa8cbac551742c15d771',·1,·'gmx::EnumerationArray::begin()'], 
136 ········['../classgmx_1_1EnumerationWrapper.xhtml#abf496f9dcaab55be1b9cbe93f05312d9',·1,·'gmx::EnumerationWrapper::begin()'],135 ········['../classgmx_1_1EnumerationWrapper.xhtml#abf496f9dcaab55be1b9cbe93f05312d9',·1,·'gmx::EnumerationWrapper::begin()'],
137 ········['../classgmx_1_1ArrayRef.xhtml#a52348f625a07e17a873cf943882510f9',·1,·'gmx::ArrayRef::begin()'],136 ········['../classgmx_1_1ArrayRef.xhtml#a52348f625a07e17a873cf943882510f9',·1,·'gmx::ArrayRef::begin()'],
 137 ········['../structgmx_1_1EnumerationArray.xhtml#a4a2f5be2695dfa8cbac551742c15d771',·1,·'gmx::EnumerationArray::begin()'],
138 ········['../classgmx_1_1EnergyTerm.xhtml#a4b930e14cacc91c16a0c6e59fb48ea58',·1,·'gmx::EnergyTerm::begin()'],138 ········['../classgmx_1_1EnergyTerm.xhtml#a4b930e14cacc91c16a0c6e59fb48ea58',·1,·'gmx::EnergyTerm::begin()'],
139 ········['../classgmx_1_1IntegerBox.xhtml#a4bdda1928d7845c8e5c5c3ef2918a466',·1,·'gmx::IntegerBox::begin()'],139 ········['../classgmx_1_1IntegerBox.xhtml#a4bdda1928d7845c8e5c5c3ef2918a466',·1,·'gmx::IntegerBox::begin()'],
140 ········['../classgmx_1_1internal_1_1SimdArrayRef.xhtml#ab4801001dba830e69c9984d97e9c4932',·1,·'gmx::internal::SimdArrayRef::begin()'],140 ········['../classgmx_1_1internal_1_1SimdArrayRef.xhtml#ab4801001dba830e69c9984d97e9c4932',·1,·'gmx::internal::SimdArrayRef::begin()'],
141 ········['../classAtomRange.xhtml#afc17642be8cc592f6f47fdd9d86aa408',·1,·'AtomRange::begin()'],141 ········['../classAtomRange.xhtml#afc17642be8cc592f6f47fdd9d86aa408',·1,·'AtomRange::begin()'],
142 ········['../classIListRange.xhtml#a7526befe10a07f17dbc35e704d01aeea',·1,·'IListRange::begin()'],142 ········['../classIListRange.xhtml#a7526befe10a07f17dbc35e704d01aeea',·1,·'IListRange::begin()'],
143 ········['../classgmx_1_1EnergyFrame.xhtml#a8c6171058dd1a26721f4af8df12b7a10',·1,·'gmx::EnergyFrame::begin()'],143 ········['../classgmx_1_1EnergyFrame.xhtml#a8c6171058dd1a26721f4af8df12b7a10',·1,·'gmx::EnergyFrame::begin()'],
144 ········['../classgmx_1_1FixedCapacityVector.xhtml#a93f0ea6236ab2cc8e924025646f8d87b',·1,·'gmx::FixedCapacityVector::begin()']144 ········['../classgmx_1_1FixedCapacityVector.xhtml#a93f0ea6236ab2cc8e924025646f8d87b',·1,·'gmx::FixedCapacityVector::begin()']
Offset 152, 16 lines modifiedOffset 152, 16 lines modified
152 ····['bench_5fsetup_2ecpp_79',·['bench_setup.cpp',·['../bench__setup_8cpp.xhtml',·1,·'']]],152 ····['bench_5fsetup_2ecpp_79',·['bench_setup.cpp',·['../bench__setup_8cpp.xhtml',·1,·'']]],
153 ····['bench_5fsetup_2eh_80',·['bench_setup.h',·['../bench__setup_8h.xhtml',·1,·'']]],153 ····['bench_5fsetup_2eh_80',·['bench_setup.h',·['../bench__setup_8h.xhtml',·1,·'']]],
154 ····['bench_5fsystem_2ecpp_81',·['bench_system.cpp',·['../bench__system_8cpp.xhtml',·1,·'']]],154 ····['bench_5fsystem_2ecpp_81',·['bench_system.cpp',·['../bench__system_8cpp.xhtml',·1,·'']]],
155 ····['bench_5fsystem_2eh_82',·['bench_system.h',·['../bench__system_8h.xhtml',·1,·'']]],155 ····['bench_5fsystem_2eh_82',·['bench_system.h',·['../bench__system_8h.xhtml',·1,·'']]],
156 ····['benchmarkcombrule_83',·['BenchMarkCombRule',·['../namespaceNbnxm.xhtml#a2b0931ea4b2302d010810175754f8981',·1,·'Nbnxm']]],156 ····['benchmarkcombrule_83',·['BenchMarkCombRule',·['../namespaceNbnxm.xhtml#a2b0931ea4b2302d010810175754f8981',·1,·'Nbnxm']]],
157 ····['benchmarkcoulomb_84',·['BenchMarkCoulomb',·['../namespaceNbnxm.xhtml#a30c80bf36a688c1633e86eb7e607792f',·1,·'Nbnxm']]],157 ····['benchmarkcoulomb_84',·['BenchMarkCoulomb',·['../namespaceNbnxm.xhtml#a30c80bf36a688c1633e86eb7e607792f',·1,·'Nbnxm']]],
158 ····['benchmarkkernels_85',·['BenchMarkKernels',·['../namespaceNbnxm.xhtml#a6cd9801a8e78c975ed0ebe45c63b7715',·1,·'Nbnxm']]],158 ····['benchmarkkernels_85',·['BenchMarkKernels',·['../namespaceNbnxm.xhtml#a6cd9801a8e78c975ed0ebe45c63b7715',·1,·'Nbnxm']]],
159 ····['benchmarksystem_86',·['benchmarksystem',·['../structgmx_1_1BenchmarkSystem.xhtml',·1,·'gmx::BenchmarkSystem'], 
160 ········['../structgmx_1_1BenchmarkSystem.xhtml#a75dfe958cd7d70bdb5e90f2ec642a77b',·1,·'gmx::BenchmarkSystem::BenchmarkSystem()']159 ····['benchmarksystem_86',·['benchmarksystem',·['../structgmx_1_1BenchmarkSystem.xhtml#a75dfe958cd7d70bdb5e90f2ec642a77b',·1,·'gmx::BenchmarkSystem::BenchmarkSystem()'],
 160 ········['../structgmx_1_1BenchmarkSystem.xhtml',·1,·'gmx::BenchmarkSystem']
161 ····]],161 ····]],
162 ····['bend_87',·['Bend',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03.xhtml#a8ec2371446161e824ba0e6fb1edbba0cadcef3e264a0eecc2a9eadd4478c67a1f',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}']]],162 ····['bend_87',·['Bend',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03.xhtml#a8ec2371446161e824ba0e6fb1edbba0cadcef3e264a0eecc2a9eadd4478c67a1f',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}']]],
163 ····['bequil_88',·['bEquil',·['../structdf__history__t.xhtml#a2800c69caa7fcce2c14cb537c4909bc3',·1,·'df_history_t']]],163 ····['bequil_88',·['bEquil',·['../structdf__history__t.xhtml#a2800c69caa7fcce2c14cb537c4909bc3',·1,·'df_history_t']]],
164 ····['berendsentemperaturecoupling_89',·['BerendsenTemperatureCoupling',·['../classgmx_1_1BerendsenTemperatureCoupling.xhtml',·1,·'gmx']]],164 ····['berendsentemperaturecoupling_89',·['BerendsenTemperatureCoupling',·['../classgmx_1_1BerendsenTemperatureCoupling.xhtml',·1,·'gmx']]],
165 ····['bestvertex_90',·['bestVertex',·['../classgmx_1_1NelderMeadSimplex.xhtml#a766a1b22213cf4e5a7a10ee4130afd6f',·1,·'gmx::NelderMeadSimplex']]],165 ····['bestvertex_90',·['bestVertex',·['../classgmx_1_1NelderMeadSimplex.xhtml#a766a1b22213cf4e5a7a10ee4130afd6f',·1,·'gmx::NelderMeadSimplex']]],
166 ····['beta_91',·['beta',·['../structgmx_1_1DimParams_1_1FepDimParams.xhtml#ad3aa1edaec7f13643c5038ccc2a01a78',·1,·'gmx::DimParams::FepDimParams::beta'],166 ····['beta_91',·['beta',·['../structgmx_1_1DimParams_1_1FepDimParams.xhtml#ad3aa1edaec7f13643c5038ccc2a01a78',·1,·'gmx::DimParams::FepDimParams::beta'],
167 ········['../structgmx_1_1test_1_1AwhTestParameters.xhtml#a3f4c1a9b2610aa00392d66d2c4b183ea',·1,·'gmx::test::AwhTestParameters::beta']167 ········['../structgmx_1_1test_1_1AwhTestParameters.xhtml#a3f4c1a9b2610aa00392d66d2c4b183ea',·1,·'gmx::test::AwhTestParameters::beta']
Offset 180, 28 lines modifiedOffset 180, 28 lines modified
180 ····['bgeneratehh14interactions_103',·['bGenerateHH14Interactions',·['../structPreprocessResidue.xhtml#a7ef40e3704969bcd360c3d5d94ee264b',·1,·'PreprocessResidue']]],180 ····['bgeneratehh14interactions_103',·['bGenerateHH14Interactions',·['../structPreprocessResidue.xhtml#a7ef40e3704969bcd360c3d5d94ee264b',·1,·'PreprocessResidue']]],
181 ····['bgroups_104',·['bGroups',·['../structgmx__sel__lexer__t.xhtml#a5bf6b14ef14775f440cd6a150acf22b0',·1,·'gmx_sel_lexer_t']]],181 ····['bgroups_104',·['bGroups',·['../structgmx__sel__lexer__t.xhtml#a5bf6b14ef14775f440cd6a150acf22b0',·1,·'gmx_sel_lexer_t']]],
182 ····['bharmonic_105',·['bHarmonic',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#ad3c168d4052e3bc5a77dea8ff3a877fe',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],182 ····['bharmonic_105',·['bHarmonic',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#ad3c168d4052e3bc5a77dea8ff3a877fe',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],
183 ····['bhelix_106',·['bHelix',·['../structt__bb.xhtml#a48c50f40d59ad266202feb100567d843',·1,·'t_bb']]],183 ····['bhelix_106',·['bHelix',·['../structt__bb.xhtml#a48c50f40d59ad266202feb100567d843',·1,·'t_bb']]],
184 ····['bhidden_5f_107',·['bHidden_',·['../classgmx_1_1CommandLineHelpContext_1_1Impl.xhtml#a1a012091fc0390f509fcc3c55bd97092',·1,·'gmx::CommandLineHelpContext::Impl']]],184 ····['bhidden_5f_107',·['bHidden_',·['../classgmx_1_1CommandLineHelpContext_1_1Impl.xhtml#a1a012091fc0390f509fcc3c55bd97092',·1,·'gmx::CommandLineHelpContext::Impl']]],
185 ····['bhistonly_108',·['bHistOnly',·['../structUmbrellaOptions.xhtml#acdf67a7adadf17543b0433c028aa387a',·1,·'UmbrellaOptions']]],185 ····['bhistonly_108',·['bHistOnly',·['../structUmbrellaOptions.xhtml#acdf67a7adadf17543b0433c028aa387a',·1,·'UmbrellaOptions']]],
186 ····['bhost_5funused_109',·['bhost_UNUSED',·['../structCheckpointHeaderContents.xhtml#aef8c2b80e340df183cde5c1946fc64e5',·1,·'CheckpointHeaderContents']]],186 ····['bhost_5funused_109',·['bhost_UNUSED',·['../structCheckpointHeaderContents.xhtml#aef8c2b80e340df183cde5c1946fc64e5',·1,·'CheckpointHeaderContents']]],
 187 ····['bias_110',·['bias',·['../classgmx_1_1Bias.xhtml',·1,·'gmx::Bias'],
187 ····['bias_110',·['bias',·['../namespacegmx.xhtml#aed0429233bc357e419dafee7b8bd1344a4ad6b9e6418fd2d739906bd47e887ae3',·1,·'gmx::Bias'],188 ········['../namespacegmx.xhtml#aed0429233bc357e419dafee7b8bd1344a4ad6b9e6418fd2d739906bd47e887ae3',·1,·'gmx::Bias'],
188 ········['../classgmx_1_1PointState.xhtml#a051fc887a154fd8e8429f772006ff597',·1,·'gmx::PointState::bias()'],189 ········['../classgmx_1_1PointState.xhtml#a051fc887a154fd8e8429f772006ff597',·1,·'gmx::PointState::bias()'],
189 ········['../classgmx_1_1Bias.xhtml#a6ea05d388c5983d92b1e4f9216ec3c07',·1,·'gmx::Bias::Bias()'],190 ········['../classgmx_1_1Bias.xhtml#a6ea05d388c5983d92b1e4f9216ec3c07',·1,·'gmx::Bias::Bias()']
190 ········['../classgmx_1_1Bias.xhtml',·1,·'gmx::Bias'] 
191 ····]],191 ····]],
192 ····['bias_2ecpp_111',·['bias.cpp',·['../bias_8cpp.xhtml',·1,·'']]],192 ····['bias_2ecpp_111',·['bias.cpp',·['../bias_8cpp.xhtml',·1,·'']]],
193 ····['bias_2eh_112',·['bias.h',·['../bias_8h.xhtml',·1,·'']]],193 ····['bias_2eh_112',·['bias.h',·['../bias_8h.xhtml',·1,·'']]],
194 ····['bias_5f_113',·['bias_',·['../structgmx_1_1BiasCoupledToSystem.xhtml#a915eb82b66d861dd5377036383b654f0',·1,·'gmx::BiasCoupledToSystem::bias_'],194 ····['bias_5f_113',·['bias_',·['../structgmx_1_1BiasCoupledToSystem.xhtml#a915eb82b66d861dd5377036383b654f0',·1,·'gmx::BiasCoupledToSystem::bias_'],
 195 ········['../classgmx_1_1test_1_1BiasTest.xhtml#af4806c866b09dce06db386eb0dcea407',·1,·'gmx::test::BiasTest::bias_'],
195 ········['../classgmx_1_1test_1_1BiasFepLambdaStateTest.xhtml#ae7e39eda7a77d998b80c658f65fb9074',·1,·'gmx::test::BiasFepLambdaStateTest::bias_'],196 ········['../classgmx_1_1test_1_1BiasFepLambdaStateTest.xhtml#ae7e39eda7a77d998b80c658f65fb9074',·1,·'gmx::test::BiasFepLambdaStateTest::bias_']
196 ········['../classgmx_1_1test_1_1BiasTest.xhtml#af4806c866b09dce06db386eb0dcea407',·1,·'gmx::test::BiasTest::bias_'] 
197 ····]],197 ····]],
198 ····['biascorrectedaverage_114',·['biasCorrectedAverage',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a83f79db8f50129497cc5349b972ecabb',·1,·'gmx::ExponentialMovingAverage']]],198 ····['biascorrectedaverage_114',·['biasCorrectedAverage',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a83f79db8f50129497cc5349b972ecabb',·1,·'gmx::ExponentialMovingAverage']]],
 199 ····['biascoupledtosystem_115',·['biascoupledtosystem',·['../structgmx_1_1BiasCoupledToSystem.xhtml',·1,·'gmx::BiasCoupledToSystem'],
199 ····['biascoupledtosystem_115',·['biascoupledtosystem',·['../structgmx_1_1BiasCoupledToSystem.xhtml#a0d55bb29484a8c71778a4bf70a3ddfd0',·1,·'gmx::BiasCoupledToSystem::BiasCoupledToSystem()'],200 ········['../structgmx_1_1BiasCoupledToSystem.xhtml#a0d55bb29484a8c71778a4bf70a3ddfd0',·1,·'gmx::BiasCoupledToSystem::BiasCoupledToSystem()']
200 ········['../structgmx_1_1BiasCoupledToSystem.xhtml',·1,·'gmx::BiasCoupledToSystem'] 
201 ····]],201 ····]],
202 ····['biasedlogweightfrompoint_116',·['biasedLogWeightFromPoint',·['../namespacegmx_1_1anonymous__namespace_02biasstate_8cpp_03.xhtml#a154728ee54b770144eeaee8650142f3f',·1,·'gmx::anonymous_namespace{biasstate.cpp}']]],202 ····['biasedlogweightfrompoint_116',·['biasedLogWeightFromPoint',·['../namespacegmx_1_1anonymous__namespace_02biasstate_8cpp_03.xhtml#a154728ee54b770144eeaee8650142f3f',·1,·'gmx::anonymous_namespace{biasstate.cpp}']]],
203 ····['biasesarecompatibleforsharingbetweensimulations_117',·['biasesAreCompatibleForSharingBetweenSimulations',·['../namespacegmx.xhtml#a161ff1b8f4e89a7136264bf0130c8627',·1,·'gmx']]],203 ····['biasesarecompatibleforsharingbetweensimulations_117',·['biasesAreCompatibleForSharingBetweenSimulations',·['../namespacegmx.xhtml#a161ff1b8f4e89a7136264bf0130c8627',·1,·'gmx']]],
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145 ····['c_5fnbnxnlistsizefactorcpu_113',·['c_nbnxnListSizeFactorCpu',·['../pairlist__tuning_8cpp.xhtml#a3fcbb19cb6689beec04d844cc6c2feb8',·1,·'pairlist_tuning.cpp']]],145 ····['c_5fnbnxnlistsizefactorcpu_113',·['c_nbnxnListSizeFactorCpu',·['../pairlist__tuning_8cpp.xhtml#a3fcbb19cb6689beec04d844cc6c2feb8',·1,·'pairlist_tuning.cpp']]],
146 ····['c_5fnbnxnlistsizefactorgpu_114',·['c_nbnxnListSizeFactorGPU',·['../pairlist__tuning_8cpp.xhtml#a327a8f12f5167b1f5fedbdcf60410b8a',·1,·'pairlist_tuning.cpp']]],146 ····['c_5fnbnxnlistsizefactorgpu_114',·['c_nbnxnListSizeFactorGPU',·['../pairlist__tuning_8cpp.xhtml#a327a8f12f5167b1f5fedbdcf60410b8a',·1,·'pairlist_tuning.cpp']]],
147 ····['c_5fnbnxnlistsizefactorintelxeonphi_115',·['c_nbnxnListSizeFactorIntelXeonPhi',·['../pairlist__tuning_8cpp.xhtml#aae87045b170c054f573dcc97066eeecd',·1,·'pairlist_tuning.cpp']]],147 ····['c_5fnbnxnlistsizefactorintelxeonphi_115',·['c_nbnxnListSizeFactorIntelXeonPhi',·['../pairlist__tuning_8cpp.xhtml#aae87045b170c054f573dcc97066eeecd',·1,·'pairlist_tuning.cpp']]],
148 ····['c_5fnbnxnlistsizefactormargin_116',·['c_nbnxnListSizeFactorMargin',·['../pairlist__tuning_8cpp.xhtml#a21bf1f047a789ad132b04ba504dd08bf',·1,·'pairlist_tuning.cpp']]],148 ····['c_5fnbnxnlistsizefactormargin_116',·['c_nbnxnListSizeFactorMargin',·['../pairlist__tuning_8cpp.xhtml#a21bf1f047a789ad132b04ba504dd08bf',·1,·'pairlist_tuning.cpp']]],
149 ····['c_5fnmtomrcunits_117',·['c_nmToMrcUnits',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a084c836f7f75cc97b5c92d3fa400dc70',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],149 ····['c_5fnmtomrcunits_117',·['c_nmToMrcUnits',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a084c836f7f75cc97b5c92d3fa400dc70',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
150 ····['c_5fnormalizationnames_118',·['c_normalizationNames',·['../group__module__trajectoryanalysis.xhtml#gafe9e3ae6c83f2aeb21e0ad8841e3b0e2',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}']]],150 ····['c_5fnormalizationnames_118',·['c_normalizationNames',·['../group__module__trajectoryanalysis.xhtml#gafe9e3ae6c83f2aeb21e0ad8841e3b0e2',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}']]],
151 ····['c_5fnumatoms_119',·['c_numatoms',·['../namespacegmx_1_1anonymous__namespace_02wholemoleculetransform_8cpp_03.xhtml#aefe3a2139c12a370bfa601c498f7c317',·1,·'gmx::anonymous_namespace{wholemoleculetransform.cpp}::c_numAtoms'],151 ····['c_5fnumatoms_119',·['c_numatoms',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pairs_8cpp_03.xhtml#ab0d16511710d3d446c4ebe139a1a93d8',·1,·'gmx::test::anonymous_namespace{pairs.cpp}::c_numAtoms'],
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153 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a60f4b0f65ad59fda745897b8764dae0a',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::c_numAtoms'],153 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a60f4b0f65ad59fda745897b8764dae0a',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::c_numAtoms'],
154 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02pairs_8cpp_03.xhtml#ab0d16511710d3d446c4ebe139a1a93d8',·1,·'gmx::test::anonymous_namespace{pairs.cpp}::c_numAtoms']154 ········['../namespacegmx_1_1anonymous__namespace_02wholemoleculetransform_8cpp_03.xhtml#aefe3a2139c12a370bfa601c498f7c317',·1,·'gmx::anonymous_namespace{wholemoleculetransform.cpp}::c_numAtoms']
155 ····]],155 ····]],
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157 ····['c_5fnumboundingboxbounds1d_121',·['c_numBoundingBoxBounds1D',·['../namespaceNbnxm.xhtml#a1eba0f67a1d9680949c080c762e879a5',·1,·'Nbnxm']]],157 ····['c_5fnumboundingboxbounds1d_121',·['c_numBoundingBoxBounds1D',·['../namespaceNbnxm.xhtml#a1eba0f67a1d9680949c080c762e879a5',·1,·'Nbnxm']]],
158 ····['c_5fnumcorrelationblocks_122',·['c_numCorrelationBlocks',·['../classgmx_1_1CorrelationTensor.xhtml#a3bacb906f9931328bddd22c8e218c9d4',·1,·'gmx::CorrelationTensor']]],158 ····['c_5fnumcorrelationblocks_122',·['c_numCorrelationBlocks',·['../classgmx_1_1CorrelationTensor.xhtml#a3bacb906f9931328bddd22c8e218c9d4',·1,·'gmx::CorrelationTensor']]],
159 ····['c_5fnumeigenrealsperexperiment_123',·['c_numEigenRealsPerExperiment',·['../structt__oriresdata.xhtml#a19c8ceb03fed76dc54909c852ea83321',·1,·'t_oriresdata']]],159 ····['c_5fnumeigenrealsperexperiment_123',·['c_numEigenRealsPerExperiment',·['../structt__oriresdata.xhtml#a19c8ceb03fed76dc54909c852ea83321',·1,·'t_oriresdata']]],
160 ····['c_5fnumelectypes_124',·['c_numElecTypes',·['../namespaceNbnxm.xhtml#a6db90ea2cf677b2766d056d777a07088',·1,·'Nbnxm']]],160 ····['c_5fnumelectypes_124',·['c_numElecTypes',·['../namespaceNbnxm.xhtml#a6db90ea2cf677b2766d056d777a07088',·1,·'Nbnxm']]],
161 ····['c_5fnumfirsttuningintervalskip_125',·['c_numFirstTuningIntervalSkip',·['../pme__load__balancing_8cpp.xhtml#a358540e661dc9efd36da10c2989d397a',·1,·'pme_load_balancing.cpp']]],161 ····['c_5fnumfirsttuningintervalskip_125',·['c_numFirstTuningIntervalSkip',·['../pme__load__balancing_8cpp.xhtml#a358540e661dc9efd36da10c2989d397a',·1,·'pme_load_balancing.cpp']]],
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166 ····['c_5fnumvdwtypes_130',·['c_numVdwTypes',·['../namespaceNbnxm.xhtml#a06589b55845ca1245b0e50cac7ad86c9',·1,·'Nbnxm']]],166 ····['c_5fnumvdwtypes_130',·['c_numVdwTypes',·['../namespaceNbnxm.xhtml#a06589b55845ca1245b0e50cac7ad86c9',·1,·'Nbnxm']]],
167 ····['c_5foldestsupportedmagicnumber_131',·['c_oldestSupportedMagicNumber',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#afb8f8255516cbf4c08e51ee7cface65b',·1,·'anonymous_namespace{edsam.cpp}']]],167 ····['c_5foldestsupportedmagicnumber_131',·['c_oldestSupportedMagicNumber',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#afb8f8255516cbf4c08e51ee7cface65b',·1,·'anonymous_namespace{edsam.cpp}']]],
168 ····['c_5foldestunsupportedmagicnumber_132',·['c_oldestUnsupportedMagicNumber',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#a3d1dc11b4252282579382b89abd9d815',·1,·'anonymous_namespace{edsam.cpp}']]],168 ····['c_5foldestunsupportedmagicnumber_132',·['c_oldestUnsupportedMagicNumber',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#a3d1dc11b4252282579382b89abd9d815',·1,·'anonymous_namespace{edsam.cpp}']]],
169 ····['c_5foptions_133',·['c_options',·['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#a1555a48dc2e0847fe505724fda04fc66',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],169 ····['c_5foptions_133',·['c_options',·['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#a1555a48dc2e0847fe505724fda04fc66',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],
170 ····['c_5fpackx4_134',·['c_packX4',·['../atomdata_8h.xhtml#a5edaa1830e4412dd0d817e50585589a7',·1,·'atomdata.h']]],170 ····['c_5fpackx4_134',·['c_packX4',·['../atomdata_8h.xhtml#a5edaa1830e4412dd0d817e50585589a7',·1,·'atomdata.h']]],
171 ····['c_5fpackx8_135',·['c_packX8',·['../atomdata_8h.xhtml#a5b81bb507cc1c9ef5b09fb99ee45eff0',·1,·'atomdata.h']]],171 ····['c_5fpackx8_135',·['c_packX8',·['../atomdata_8h.xhtml#a5b81bb507cc1c9ef5b09fb99ee45eff0',·1,·'atomdata.h']]],
172 ····['c_5fpbcfortests_136',·['c_pbcfortests',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pairs_8cpp_03.xhtml#a4e60b5e4d9d4e96d420da062cdd7136f',·1,·'gmx::test::anonymous_namespace{pairs.cpp}::c_pbcForTests'], 
173 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02position__restraints_8cpp_03.xhtml#a3f98f7220875de5238f25cb8ef1a380e',·1,·'gmx::test::anonymous_namespace{position_restraints.cpp}::c_pbcForTests'],172 ····['c_5fpbcfortests_136',·['c_pbcfortests',·['../namespacegmx_1_1test_1_1anonymous__namespace_02position__restraints_8cpp_03.xhtml#a3f98f7220875de5238f25cb8ef1a380e',·1,·'gmx::test::anonymous_namespace{position_restraints.cpp}::c_pbcForTests'],
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174 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a8716925dfcab1e34ee190aa91b188f0a',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::c_pbcForTests']174 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a8716925dfcab1e34ee190aa91b188f0a',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::c_pbcForTests']
175 ····]],175 ····]],
176 ····['c_5fpbctypenames_137',·['c_pbcTypeNames',·['../pbc_8cpp.xhtml#a7be910db7d0fa30ca5568f9cbc332ee9',·1,·'pbc.cpp']]],176 ····['c_5fpbctypenames_137',·['c_pbcTypeNames',·['../pbc_8cpp.xhtml#a7be910db7d0fa30ca5568f9cbc332ee9',·1,·'pbc.cpp']]],
177 ····['c_5fpdbatomstypenames_138',·['c_pdbAtomsTypeNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02select_8cpp_03.xhtml#a04755ce557be547fa02a3bd3486e70f5',·1,·'gmx::analysismodules::anonymous_namespace{select.cpp}']]],177 ····['c_5fpdbatomstypenames_138',·['c_pdbAtomsTypeNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02select_8cpp_03.xhtml#a04755ce557be547fa02a3bd3486e70f5',·1,·'gmx::analysismodules::anonymous_namespace{select.cpp}']]],
178 ····['c_5fpmeatomdatablocksize_139',·['c_pmeAtomDataBlockSize',·['../pme__gpu__internal_8cpp.xhtml#a9751dab48d98743b36ad4d6eee89aab6',·1,·'pme_gpu_internal.cpp']]],178 ····['c_5fpmeatomdatablocksize_139',·['c_pmeAtomDataBlockSize',·['../pme__gpu__internal_8cpp.xhtml#a9751dab48d98743b36ad4d6eee89aab6',·1,·'pme_gpu_internal.cpp']]],
179 ····['c_5fpmegpuorder_140',·['c_pmeGpuOrder',·['../pme__gpu__constants_8h.xhtml#a8027cdc3ec057297fa567378562d892e',·1,·'pme_gpu_constants.h']]],179 ····['c_5fpmegpuorder_140',·['c_pmeGpuOrder',·['../pme__gpu__constants_8h.xhtml#a8027cdc3ec057297fa567378562d892e',·1,·'pme_gpu_constants.h']]],
180 ····['c_5fppstretchesnames_141',·['c_PPStretchesNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03.xhtml#acd7005765b5321aa2e84a1efa94e4804',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}']]],180 ····['c_5fppstretchesnames_141',·['c_PPStretchesNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03.xhtml#acd7005765b5321aa2e84a1efa94e4804',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}']]],
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188 ····['c_5fpullmaxnumlocalatomssinglethreaded_149',·['c_pullMaxNumLocalAtomsSingleThreaded',·['../pull__internal_8h.xhtml#ad00c367c39da602d9a06dae3e78e3906',·1,·'pull_internal.h']]],188 ····['c_5fpullmaxnumlocalatomssinglethreaded_149',·['c_pullMaxNumLocalAtomsSingleThreaded',·['../pull__internal_8h.xhtml#ad00c367c39da602d9a06dae3e78e3906',·1,·'pull_internal.h']]],
189 ····['c_5fqmmmcp2kmodulename_150',·['c_qmmmCP2KModuleName',·['../namespacegmx.xhtml#a2dc5d75b30933ef685d2af785d491f84',·1,·'gmx']]],189 ····['c_5fqmmmcp2kmodulename_150',·['c_qmmmCP2KModuleName',·['../namespacegmx.xhtml#a2dc5d75b30933ef685d2af785d491f84',·1,·'gmx']]],
190 ····['c_5fqmmmqmmethodnames_151',·['c_qmmmQMMethodNames',·['../namespacegmx.xhtml#afc6d6c1e63e76316db42e69f486d058f',·1,·'gmx']]],190 ····['c_5fqmmmqmmethodnames_151',·['c_qmmmQMMethodNames',·['../namespacegmx.xhtml#afc6d6c1e63e76316db42e69f486d058f',·1,·'gmx']]],
191 ····['c_5frefcoordscalingfortests_152',·['c_refCoordScalingForTests',·['../namespacegmx_1_1test_1_1anonymous__namespace_02position__restraints_8cpp_03.xhtml#a3420204ff48374d1304ea0440d3fb0b9',·1,·'gmx::test::anonymous_namespace{position_restraints.cpp}']]],191 ····['c_5frefcoordscalingfortests_152',·['c_refCoordScalingForTests',·['../namespacegmx_1_1test_1_1anonymous__namespace_02position__restraints_8cpp_03.xhtml#a3420204ff48374d1304ea0440d3fb0b9',·1,·'gmx::test::anonymous_namespace{position_restraints.cpp}']]],
192 ····['c_5fregexstringstoskip_153',·['c_regexStringsToSkip',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pdb2gmx_8cpp_03.xhtml#ae31eabd72e6bdd29eb10117291c65c32',·1,·'gmx::test::anonymous_namespace{pdb2gmx.cpp}']]],192 ····['c_5fregexstringstoskip_153',·['c_regexStringsToSkip',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pdb2gmx_8cpp_03.xhtml#ae31eabd72e6bdd29eb10117291c65c32',·1,·'gmx::test::anonymous_namespace{pdb2gmx.cpp}']]],
193 ····['c_5fresiduenumberingtypenames_154',·['c_residueNumberingTypeNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02select_8cpp_03.xhtml#aacce3e6b8a3d818ebca234f667803dd9',·1,·'gmx::analysismodules::anonymous_namespace{select.cpp}']]],193 ····['c_5fresiduenumberingtypenames_154',·['c_residueNumberingTypeNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02select_8cpp_03.xhtml#aacce3e6b8a3d818ebca234f667803dd9',·1,·'gmx::analysismodules::anonymous_namespace{select.cpp}']]],
194 ····['c_5frf_155',·['c_rf',·['../structNBParamGpu.xhtml#a7b6221b3de733d7daff18614942d2146',·1,·'NBParamGpu::c_rf'], 
195 ········['../structcl__nbparam__params.xhtml#a821ce0f76686cc34547adfb4cd62bb81',·1,·'cl_nbparam_params::c_rf']194 ····['c_5frf_155',·['c_rf',·['../structcl__nbparam__params.xhtml#a821ce0f76686cc34547adfb4cd62bb81',·1,·'cl_nbparam_params::c_rf'],
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196 ····]],196 ····]],
197 ····['c_5frocffterrorstrings_156',·['c_rocfftErrorStrings',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03.xhtml#a760553c2167f04e28ac17eef73595bc9',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]],197 ····['c_5frocffterrorstrings_156',·['c_rocfftErrorStrings',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03.xhtml#a760553c2167f04e28ac17eef73595bc9',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]],
198 ····['c_5frootnodename_157',·['c_RootNodeName',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#af8fced14cf0f669ed507c1d04af58fe2',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],198 ····['c_5frootnodename_157',·['c_RootNodeName',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#af8fced14cf0f669ed507c1d04af58fe2',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],
199 ····['c_5fsampleforcesfull_158',·['c_sampleForcesFull',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmegathertest_8cpp_03.xhtml#a096c0d45afd6872145063fb37bfca485',·1,·'gmx::test::anonymous_namespace{pmegathertest.cpp}']]],199 ····['c_5fsampleforcesfull_158',·['c_sampleForcesFull',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmegathertest_8cpp_03.xhtml#a096c0d45afd6872145063fb37bfca485',·1,·'gmx::test::anonymous_namespace{pmegathertest.cpp}']]],
200 ····['c_5fscihistogramsize_159',·['c_sciHistogramSize',·['../gpu__types__common_8h.xhtml#a092d8a8e21b474d0d27776b4686d068b',·1,·'gpu_types_common.h']]],200 ····['c_5fscihistogramsize_159',·['c_sciHistogramSize',·['../gpu__types__common_8h.xhtml#a092d8a8e21b474d0d27776b4686d068b',·1,·'gpu_types_common.h']]],
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430 ····['densityfit_2eh_266',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],430 ····['densityfit_2eh_266',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],
431 ····['densityfitting_267',·['densityfitting',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml#aa9839e3720a234577932dd8d647294c7',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting::DensityFitting()'],431 ····['densityfitting_267',·['densityfitting',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml#aa9839e3720a234577932dd8d647294c7',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting::DensityFitting()'],
432 ········['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting']432 ········['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting']
433 ····]],433 ····]],
434 ····['densityfitting_2ecpp_268',·['densityfitting.cpp',·['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],434 ····['densityfitting_2ecpp_268',·['densityfitting.cpp',·['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],
435 ········['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']435 ········['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']
436 ····]],436 ····]],
437 ····['densityfittingamplitudelookup_269',·['densityfittingamplitudelookup',·['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml',·1,·'gmx::DensityFittingAmplitudeLookup'],437 ····['densityfittingamplitudelookup_269',·['densityfittingamplitudelookup',·['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#aa1d2f04d8d7aae3d5622cd859a201cbb',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(const·DensityFittingAmplitudeLookup·&amp;other)'],
438 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#ab390de4a90d3b122cc6d54862bfc158f',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(DensityFittingAmplitudeLookup·&amp;&amp;other)·noexcept'],438 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#ab390de4a90d3b122cc6d54862bfc158f',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(DensityFittingAmplitudeLookup·&amp;&amp;other)·noexcept'],
439 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#aa1d2f04d8d7aae3d5622cd859a201cbb',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(const·DensityFittingAmplitudeLookup·&amp;other)'], 
440 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#a59fc899181bcc2e39969fa553087444d',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(const·DensityFittingAmplitudeMethod·&amp;method)']439 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#a59fc899181bcc2e39969fa553087444d',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(const·DensityFittingAmplitudeMethod·&amp;method)'],
 440 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml',·1,·'gmx::DensityFittingAmplitudeLookup']
441 ····]],441 ····]],
442 ····['densityfittingamplitudelookup_2ecpp_270',·['densityfittingamplitudelookup.cpp',·['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],442 ····['densityfittingamplitudelookup_2ecpp_270',·['densityfittingamplitudelookup.cpp',·['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],
443 ········['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']443 ········['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']
444 ····]],444 ····]],
445 ····['densityfittingamplitudelookup_2eh_271',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],445 ····['densityfittingamplitudelookup_2eh_271',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],
446 ····['densityfittingamplitudemethod_272',·['DensityFittingAmplitudeMethod',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099f',·1,·'gmx']]],446 ····['densityfittingamplitudemethod_272',·['DensityFittingAmplitudeMethod',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099f',·1,·'gmx']]],
447 ····['densityfittingforce_273',·['densityfittingforce',·['../classgmx_1_1DensityFittingForce.xhtml#a4515397cbc5ab594e8e9066302e02eca',·1,·'gmx::DensityFittingForce::DensityFittingForce(const·DensityFittingForce·&amp;other)'], 
448 ········['../classgmx_1_1DensityFittingForce.xhtml#a3eab6d07afa82b211179207e74072ff0',·1,·'gmx::DensityFittingForce::DensityFittingForce(DensityFittingForce·&amp;&amp;other)·noexcept'],447 ····['densityfittingforce_273',·['densityfittingforce',·['../classgmx_1_1DensityFittingForce.xhtml#a3eab6d07afa82b211179207e74072ff0',·1,·'gmx::DensityFittingForce::DensityFittingForce(DensityFittingForce·&amp;&amp;other)·noexcept'],
 448 ········['../classgmx_1_1DensityFittingForce.xhtml#a4515397cbc5ab594e8e9066302e02eca',·1,·'gmx::DensityFittingForce::DensityFittingForce(const·DensityFittingForce·&amp;other)'],
449 ········['../classgmx_1_1DensityFittingForce.xhtml#acf7150b3a47e6878c27e70500c221d4a',·1,·'gmx::DensityFittingForce::DensityFittingForce(const·GaussianSpreadKernelParameters::Shape·&amp;kernelShapeParameters)'],449 ········['../classgmx_1_1DensityFittingForce.xhtml#acf7150b3a47e6878c27e70500c221d4a',·1,·'gmx::DensityFittingForce::DensityFittingForce(const·GaussianSpreadKernelParameters::Shape·&amp;kernelShapeParameters)'],
450 ········['../classgmx_1_1DensityFittingForce.xhtml',·1,·'gmx::DensityFittingForce']450 ········['../classgmx_1_1DensityFittingForce.xhtml',·1,·'gmx::DensityFittingForce']
451 ····]],451 ····]],
452 ····['densityfittingforce_2ecpp_274',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],452 ····['densityfittingforce_2ecpp_274',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],
453 ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']453 ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']
454 ····]],454 ····]],
455 ····['densityfittingforce_2eh_275',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],455 ····['densityfittingforce_2eh_275',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],
Offset 612, 26 lines modifiedOffset 612, 26 lines modified
612 ····['deviceinfolist_5f_377',·['deviceInfoList_',·['../structgmx_1_1DeviceDetectionResult.xhtml#a70ea01a606765254475f43b92a678218',·1,·'gmx::DeviceDetectionResult']]],612 ····['deviceinfolist_5f_377',·['deviceInfoList_',·['../structgmx_1_1DeviceDetectionResult.xhtml#a70ea01a606765254475f43b92a678218',·1,·'gmx::DeviceDetectionResult']]],
613 ····['deviceinformation_378',·['DeviceInformation',·['../structDeviceInformation.xhtml',·1,·'']]],613 ····['deviceinformation_378',·['DeviceInformation',·['../structDeviceInformation.xhtml',·1,·'']]],
614 ····['devicenottargeted_379',·['DeviceNotTargeted',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888ae0a8f15beccf0777dc0db7d1596b1e02',·1,·'device_information.h']]],614 ····['devicenottargeted_379',·['DeviceNotTargeted',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888ae0a8f15beccf0777dc0db7d1596b1e02',·1,·'device_information.h']]],
615 ····['devices_380',·['devices',·['../structgmx_1_1HardwareTopology_1_1Machine.xhtml#a2e5f16d9ac9b2a7e020450a8bbde0c67',·1,·'gmx::HardwareTopology::Machine']]],615 ····['devices_380',·['devices',·['../structgmx_1_1HardwareTopology_1_1Machine.xhtml#a2e5f16d9ac9b2a7e020450a8bbde0c67',·1,·'gmx::HardwareTopology::Machine']]],
616 ····['devicesselectedbyuser_381',·['devicesSelectedByUser',·['../structgmx__hw__opt__t.xhtml#afcd054472cdb483614394e44d8526ac2',·1,·'gmx_hw_opt_t']]],616 ····['devicesselectedbyuser_381',·['devicesSelectedByUser',·['../structgmx__hw__opt__t.xhtml#afcd054472cdb483614394e44d8526ac2',·1,·'gmx_hw_opt_t']]],
617 ····['devicestatus_382',·['DeviceStatus',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888',·1,·'device_information.h']]],617 ····['devicestatus_382',·['DeviceStatus',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888',·1,·'device_information.h']]],
618 ····['devicestream_383',·['devicestream',·['../classDeviceStream.xhtml',·1,·'DeviceStream'],618 ····['devicestream_383',·['devicestream',·['../classDeviceStream.xhtml',·1,·'DeviceStream'],
619 ········['../classDeviceStream.xhtml#acec1cd32716673fce69738e57e3b4ccb',·1,·'DeviceStream::DeviceStream()'], 
620 ········['../classgmx_1_1test_1_1TestDevice.xhtml#afa7d5d2194cded2f8d2717fe85eb47de',·1,·'gmx::test::TestDevice::deviceStream()']619 ········['../classgmx_1_1test_1_1TestDevice.xhtml#afa7d5d2194cded2f8d2717fe85eb47de',·1,·'gmx::test::TestDevice::deviceStream()'],
 620 ········['../classDeviceStream.xhtml#acec1cd32716673fce69738e57e3b4ccb',·1,·'DeviceStream::DeviceStream()']
621 ····]],621 ····]],
622 ····['devicestreammanager_384',·['devicestreammanager',·['../classgmx_1_1DeviceStreamManager.xhtml#af4af89575a6d318fe0d107f74df07122',·1,·'gmx::DeviceStreamManager::DeviceStreamManager()'],622 ····['devicestreammanager_384',·['devicestreammanager',·['../classgmx_1_1DeviceStreamManager.xhtml#af4af89575a6d318fe0d107f74df07122',·1,·'gmx::DeviceStreamManager::DeviceStreamManager()'],
623 ········['../classgmx_1_1DeviceStreamManager.xhtml',·1,·'gmx::DeviceStreamManager']623 ········['../classgmx_1_1DeviceStreamManager.xhtml',·1,·'gmx::DeviceStreamManager']
624 ····]],624 ····]],
625 ····['devicestreammanagertest_385',·['DeviceStreamManagerTest',·['../classgmx_1_1test_1_1anonymous__namespace_02device__stream__manager_8cpp_03_1_1DeviceStreamManagerTest.xhtml',·1,·'gmx::test::anonymous_namespace{device_stream_manager.cpp}']]],625 ····['devicestreammanagertest_385',·['DeviceStreamManagerTest',·['../classgmx_1_1test_1_1anonymous__namespace_02device__stream__manager_8cpp_03_1_1DeviceStreamManagerTest.xhtml',·1,·'gmx::test::anonymous_namespace{device_stream_manager.cpp}']]],
626 ····['devicestreampriority_386',·['DeviceStreamPriority',·['../device__stream_8h.xhtml#a745c3a25d092600ae45b68d7e73d8319',·1,·'device_stream.h']]],626 ····['devicestreampriority_386',·['DeviceStreamPriority',·['../device__stream_8h.xhtml#a745c3a25d092600ae45b68d7e73d8319',·1,·'device_stream.h']]],
627 ····['devicestreams_387',·['deviceStreams',·['../structNbnxmGpu.xhtml#ad744a8ed17f666335812b98b2dd6091d',·1,·'NbnxmGpu']]],627 ····['devicestreams_387',·['deviceStreams',·['../structNbnxmGpu.xhtml#ad744a8ed17f666335812b98b2dd6091d',·1,·'NbnxmGpu']]],
628 ····['devicestreamtype_388',·['DeviceStreamType',·['../namespacegmx.xhtml#a90e1f148d98685136b343e0a20d3c2e5',·1,·'gmx']]],628 ····['devicestreamtype_388',·['DeviceStreamType',·['../namespacegmx.xhtml#a90e1f148d98685136b343e0a20d3c2e5',·1,·'gmx']]],
629 ····['devicetexture_389',·['devicetexture',·['../devicebuffer__ocl_8h.xhtml#a960fcf6fb2fa8586385940071cfaa2fa',·1,·'DeviceTexture:&#160;devicebuffer_ocl.h'],629 ····['devicetexture_389',·['devicetexture',·['../gputraits__sycl_8h.xhtml#a960fcf6fb2fa8586385940071cfaa2fa',·1,·'DeviceTexture:&#160;gputraits_sycl.h'],
630 ········['../gputraits__sycl_8h.xhtml#a960fcf6fb2fa8586385940071cfaa2fa',·1,·'DeviceTexture:&#160;gputraits_sycl.h']630 ········['../devicebuffer__ocl_8h.xhtml#a960fcf6fb2fa8586385940071cfaa2fa',·1,·'DeviceTexture:&#160;devicebuffer_ocl.h']
631 ····]],631 ····]],
632 ····['devicetransfers_2ecpp_390',·['devicetransfers.cpp',·['../devicetransfers_8cpp.xhtml',·1,·'']]],632 ····['devicetransfers_2ecpp_390',·['devicetransfers.cpp',·['../devicetransfers_8cpp.xhtml',·1,·'']]],
633 ····['devicetransfers_2eh_391',·['devicetransfers.h',·['../devicetransfers_8h.xhtml',·1,·'']]],633 ····['devicetransfers_2eh_391',·['devicetransfers.h',·['../devicetransfers_8h.xhtml',·1,·'']]],
634 ····['devicetransfers_5focl_2ecpp_392',·['devicetransfers_ocl.cpp',·['../devicetransfers__ocl_8cpp.xhtml',·1,·'']]],634 ····['devicetransfers_5focl_2ecpp_392',·['devicetransfers_ocl.cpp',·['../devicetransfers__ocl_8cpp.xhtml',·1,·'']]],
635 ····['devicetransfers_5fsycl_2ecpp_393',·['devicetransfers_sycl.cpp',·['../devicetransfers__sycl_8cpp.xhtml',·1,·'']]],635 ····['devicetransfers_5fsycl_2ecpp_393',·['devicetransfers_sycl.cpp',·['../devicetransfers__sycl_8cpp.xhtml',·1,·'']]],
636 ····['devicevendor_394',·['devicevendor',·['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508c',·1,·'DeviceVendor:&#160;device_information.h'],636 ····['devicevendor_394',·['devicevendor',·['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508c',·1,·'DeviceVendor:&#160;device_information.h'],
637 ········['../structDeviceInformation.xhtml#af4bb0f772e111410d33b2d1a72b3743f',·1,·'DeviceInformation::deviceVendor']637 ········['../structDeviceInformation.xhtml#af4bb0f772e111410d33b2d1a72b3743f',·1,·'DeviceInformation::deviceVendor']
Offset 958, 16 lines modifiedOffset 958, 16 lines modified
958 ····]],958 ····]],
959 ····['doubletostring_618',·['doubleToString',·['../group__module__utility.xhtml#gadd11829c264b9d9b89a68a0baf26a7bd',·1,·'gmx']]],959 ····['doubletostring_618',·['doubleToString',·['../group__module__utility.xhtml#gadd11829c264b9d9b89a68a0baf26a7bd',·1,·'gmx']]],
960 ····['douchar_619',·['doUChar',·['../classgmx_1_1FileIOXdrSerializer.xhtml#a0a3c7b45d828e8a5dc31094d2e23aa19',·1,·'gmx::FileIOXdrSerializer']]],960 ····['douchar_619',·['doUChar',·['../classgmx_1_1FileIOXdrSerializer.xhtml#a0a3c7b45d828e8a5dc31094d2e23aa19',·1,·'gmx::FileIOXdrSerializer']]],
961 ····['douchararray_620',·['doUCharArray',·['../classgmx_1_1FileIOXdrSerializer.xhtml#a0e2f90a62f8aaf7f554f41725fb8ee4b',·1,·'gmx::FileIOXdrSerializer']]],961 ····['douchararray_620',·['doUCharArray',·['../classgmx_1_1FileIOXdrSerializer.xhtml#a0e2f90a62f8aaf7f554f41725fb8ee4b',·1,·'gmx::FileIOXdrSerializer']]],
962 ····['doushort_621',·['doUShort',·['../classgmx_1_1FileIOXdrSerializer.xhtml#aa1efcd8ea6bc77333af3390821a00590',·1,·'gmx::FileIOXdrSerializer']]],962 ····['doushort_621',·['doUShort',·['../classgmx_1_1FileIOXdrSerializer.xhtml#aa1efcd8ea6bc77333af3390821a00590',·1,·'gmx::FileIOXdrSerializer']]],
963 ····['dsaupd_622',·['dsaupd',·['../gmx__arpack_8h.xhtml#aede26434dc7f4a1ae472eca9d5b7bf65',·1,·'gmx_arpack.h']]],963 ····['dsaupd_622',·['dsaupd',·['../gmx__arpack_8h.xhtml#aede26434dc7f4a1ae472eca9d5b7bf65',·1,·'gmx_arpack.h']]],
964 ····['dseupd_623',·['dseupd',·['../gmx__arpack_8h.xhtml#aab6c14c639569f6bf80e7226979cb514',·1,·'gmx_arpack.h']]],964 ····['dseupd_623',·['dseupd',·['../gmx__arpack_8h.xhtml#aab6c14c639569f6bf80e7226979cb514',·1,·'gmx_arpack.h']]],
965 ····['dssp_2ecpp_624',·['dssp.cpp',·['../modules_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)'],965 ····['dssp_2ecpp_624',·['dssp.cpp',·['../tests_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)'],
966 ········['../tests_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)']966 ········['../modules_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)']
967 ····]],967 ····]],
968 ····['dssp_2eh_625',·['dssp.h',·['../dssp_8h.xhtml',·1,·'']]],968 ····['dssp_2eh_625',·['dssp.h',·['../dssp_8h.xhtml',·1,·'']]],
969 ····['dsspdata_5f_626',·['dsspData_',·['../structgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1DsspStorageFrame.xhtml#a8399a04649caede9f20a0c8146faf1b1',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::DsspStorageFrame']]],969 ····['dsspdata_5f_626',·['dsspData_',·['../structgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1DsspStorageFrame.xhtml#a8399a04649caede9f20a0c8146faf1b1',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::DsspStorageFrame']]],
970 ····['dsspmoduletestdsspnb_627',·['DsspModuleTestDsspNB',·['../classgmx_1_1test_1_1anonymous__namespace_02dssp_8cpp_03_1_1DsspModuleTestDsspNB.xhtml',·1,·'gmx::test::anonymous_namespace{dssp.cpp}']]],970 ····['dsspmoduletestdsspnb_627',·['DsspModuleTestDsspNB',·['../classgmx_1_1test_1_1anonymous__namespace_02dssp_8cpp_03_1_1DsspModuleTestDsspNB.xhtml',·1,·'gmx::test::anonymous_namespace{dssp.cpp}']]],
971 ····['dsspmoduletestdsspnonb_628',·['DsspModuleTestDsspNoNB',·['../classgmx_1_1test_1_1anonymous__namespace_02dssp_8cpp_03_1_1DsspModuleTestDsspNoNB.xhtml',·1,·'gmx::test::anonymous_namespace{dssp.cpp}']]],971 ····['dsspmoduletestdsspnonb_628',·['DsspModuleTestDsspNoNB',·['../classgmx_1_1test_1_1anonymous__namespace_02dssp_8cpp_03_1_1DsspModuleTestDsspNoNB.xhtml',·1,·'gmx::test::anonymous_namespace{dssp.cpp}']]],
972 ····['dsspmoduletestgromacsnb_629',·['DsspModuleTestGromacsNB',·['../classgmx_1_1test_1_1anonymous__namespace_02dssp_8cpp_03_1_1DsspModuleTestGromacsNB.xhtml',·1,·'gmx::test::anonymous_namespace{dssp.cpp}']]],972 ····['dsspmoduletestgromacsnb_629',·['DsspModuleTestGromacsNB',·['../classgmx_1_1test_1_1anonymous__namespace_02dssp_8cpp_03_1_1DsspModuleTestGromacsNB.xhtml',·1,·'gmx::test::anonymous_namespace{dssp.cpp}']]],
973 ····['dsspmoduletestgromacsnonb_630',·['DsspModuleTestGromacsNoNB',·['../classgmx_1_1test_1_1anonymous__namespace_02dssp_8cpp_03_1_1DsspModuleTestGromacsNoNB.xhtml',·1,·'gmx::test::anonymous_namespace{dssp.cpp}']]],973 ····['dsspmoduletestgromacsnonb_630',·['DsspModuleTestGromacsNoNB',·['../classgmx_1_1test_1_1anonymous__namespace_02dssp_8cpp_03_1_1DsspModuleTestGromacsNoNB.xhtml',·1,·'gmx::test::anonymous_namespace{dssp.cpp}']]],
Offset 986, 17 lines modifiedOffset 986, 17 lines modified
986 ····['dtsample_5f_639',·['dtSample_',·['../classgmx_1_1CorrelationGrid.xhtml#ae2d1a1db7c90ff9b5d6ef325162d7df6',·1,·'gmx::CorrelationGrid']]],986 ····['dtsample_5f_639',·['dtSample_',·['../classgmx_1_1CorrelationGrid.xhtml#ae2d1a1db7c90ff9b5d6ef325162d7df6',·1,·'gmx::CorrelationGrid']]],
987 ····['dummy_640',·['dummy',·['../structgmx__cache__protect__t.xhtml#a0b75c08cd19480c1994187c4cd59fcf7',·1,·'gmx_cache_protect_t']]],987 ····['dummy_640',·['dummy',·['../structgmx__cache__protect__t.xhtml#a0b75c08cd19480c1994187c4cd59fcf7',·1,·'gmx_cache_protect_t']]],
988 ····['dummyconverterpointer_641',·['DummyConverterPointer',·['../namespacegmx_1_1test.xhtml#a045885840f37e8b63d82ff9519d0795e',·1,·'gmx::test']]],988 ····['dummyconverterpointer_641',·['DummyConverterPointer',·['../namespacegmx_1_1test.xhtml#a045885840f37e8b63d82ff9519d0795e',·1,·'gmx::test']]],
989 ····['dummymass_642',·['dummyMass',·['../structVirtualSiteConfiguration.xhtml#a86c56dfa2a3ae3d2233025dd0211e6d4',·1,·'VirtualSiteConfiguration']]],989 ····['dummymass_642',·['dummyMass',·['../structVirtualSiteConfiguration.xhtml#a86c56dfa2a3ae3d2233025dd0211e6d4',·1,·'VirtualSiteConfiguration']]],
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993 ····['dump_2ecpp_646',·['dump.cpp',·['../tools_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],993 ····['dump_2ecpp_646',·['dump.cpp',·['../domdec_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],
994 ········['../domdec_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'], 
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996 ····]],996 ····]],
997 ····['dump_2eh_647',·['dump.h',·['../domdec_2dump_8h.xhtml',·1,·'']]],997 ····['dump_2eh_647',·['dump.h',·['../domdec_2dump_8h.xhtml',·1,·'']]],
998 ····['dump_5fconfs_648',·['dump_confs',·['../namespacegmx.xhtml#a44f3c2f294d726a6ffc41f0303f8a05e',·1,·'gmx']]],998 ····['dump_5fconfs_648',·['dump_confs',·['../namespacegmx.xhtml#a44f3c2f294d726a6ffc41f0303f8a05e',·1,·'gmx']]],
999 ····['dump_5fpbc_649',·['dump_pbc',·['../pbc_8cpp.xhtml#a04742edf90899bcb8f2ece6c28d8c89e',·1,·'pbc.cpp']]],999 ····['dump_5fpbc_649',·['dump_pbc',·['../pbc_8cpp.xhtml#a04742edf90899bcb8f2ece6c28d8c89e',·1,·'pbc.cpp']]],
1000 ····['dump_5ftmp_650',·['dump_tmp',·['../autocorr_8cpp.xhtml#a9674f8059c2757e6e40d1842fcaf7b45',·1,·'autocorr.cpp']]],1000 ····['dump_5ftmp_650',·['dump_tmp',·['../autocorr_8cpp.xhtml#a9674f8059c2757e6e40d1842fcaf7b45',·1,·'autocorr.cpp']]],
1001 ····['dumpkeyvaluetree_651',·['dumpKeyValueTree',·['../group__module__utility.xhtml#ga58d8eb0b9eaeda93709f534a9387c110',·1,·'gmx']]],1001 ····['dumpkeyvaluetree_651',·['dumpKeyValueTree',·['../group__module__utility.xhtml#ga58d8eb0b9eaeda93709f534a9387c110',·1,·'gmx']]],
1002 ····['duplicatesymtab_652',·['duplicatesymtab',·['../symtab_8h.xhtml#a7a219947903b65355a4a3b5ab00079b4',·1,·'duplicateSymtab(const·t_symtab·*symtab):&#160;symtab.cpp'],1002 ····['duplicatesymtab_652',·['duplicatesymtab',·['../symtab_8h.xhtml#a7a219947903b65355a4a3b5ab00079b4',·1,·'duplicateSymtab(const·t_symtab·*symtab):&#160;symtab.cpp'],
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170 ····]],170 ····]],
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172 ········['../page_module_selection_compiler.xhtml#selcompiler_tree_arith',·1,·'Arithmetic·elements'],172 ········['../page_module_selection_compiler.xhtml#selcompiler_tree_arith',·1,·'Arithmetic·elements'],
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174 ········['../page_module_selection_parser.xhtml#selparser_tree_bool',·1,·'Boolean·elements'],174 ········['../page_module_selection_parser.xhtml#selparser_tree_bool',·1,·'Boolean·elements'],
175 ········['../page_module_selection_compiler.xhtml#selcompiler_tree_const',·1,·'Constant·elements'], 
176 ········['../page_module_selection_parser.xhtml#selparser_tree_const',·1,·'Constant·elements'],175 ········['../page_module_selection_parser.xhtml#selparser_tree_const',·1,·'Constant·elements'],
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181 ········['../page_module_selection_compiler.xhtml#selcompiler_tree_root',·1,·'Root·elements'],181 ········['../page_module_selection_compiler.xhtml#selcompiler_tree_root',·1,·'Root·elements'],
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185 ········['../page_module_selection_parser.xhtml#selparser_tree_subexpr',·1,·'Subexpression·elements'] 
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190 ········['../classgmx_1_1MttkBoxScaling.xhtml#a67b5ea328f0f9c8b0916bffbf773f51d',·1,·'gmx::MttkBoxScaling::elementSetup()'], 
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207 ····]],207 ····]],
208 ····['elementsview_143',·['elementsView',·['../classgmx_1_1ListOfLists.xhtml#a9dd0217bd4f431fe7098e4ade8eeb8b3',·1,·'gmx::ListOfLists']]],208 ····['elementsview_143',·['elementsView',·['../classgmx_1_1ListOfLists.xhtml#a9dd0217bd4f431fe7098e4ade8eeb8b3',·1,·'gmx::ListOfLists']]],
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209 ····['elementteardown_144',·['elementteardown',·['../classgmx_1_1TrajectoryElement.xhtml#acd922303352fccf31d119134f3788c53',·1,·'gmx::TrajectoryElement::elementTeardown()'],210 ········['../classgmx_1_1TrajectoryElement.xhtml#acd922303352fccf31d119134f3788c53',·1,·'gmx::TrajectoryElement::elementTeardown()'],
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211 ········['../classgmx_1_1VelocityScalingTemperatureCoupling.xhtml#a821a89ff6699c89d683385c49eec9bf0',·1,·'gmx::VelocityScalingTemperatureCoupling::elementTeardown()'], 
212 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#a4e578e1fd194892908f5771cdc561ca7',·1,·'gmx::StatePropagatorData::Element::elementTeardown()'],212 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#a4e578e1fd194892908f5771cdc561ca7',·1,·'gmx::StatePropagatorData::Element::elementTeardown()'],
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305 ····]],305 ····]],
306 ····['enerdata_182',·['enerdata',·['../classgmx_1_1EnergyData.xhtml#af5ff3635bcb4d7ecb90c7505f70ff2d9',·1,·'gmx::EnergyData::enerdata()'],306 ····['enerdata_182',·['enerdata',·['../classgmx_1_1EnergyData.xhtml#af5ff3635bcb4d7ecb90c7505f70ff2d9',·1,·'gmx::EnergyData::enerdata()'],
307 ········['../classgmx_1_1EnergyData.xhtml#a8253678c958de422aabdc634405276ca',·1,·'gmx::EnergyData::enerdata()·const']307 ········['../classgmx_1_1EnergyData.xhtml#a8253678c958de422aabdc634405276ca',·1,·'gmx::EnergyData::enerdata()·const']
308 ····]],308 ····]],
309 ····['enerdata_2ecpp_183',·['enerdata.cpp',·['../enerdata_8cpp.xhtml',·1,·'']]],309 ····['enerdata_2ecpp_183',·['enerdata.cpp',·['../enerdata_8cpp.xhtml',·1,·'']]],
310 ····['enerdata_5f_184',·['enerdata_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a178388e022bfe1f8dad4cc34a318ae9d',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest']]],310 ····['enerdata_5f_184',·['enerdata_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a178388e022bfe1f8dad4cc34a318ae9d',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest']]],
311 ····['enerdata_5fp_185',·['enerdata_p',·['../structgmx_1_1SimulatorStateData.xhtml#a44621b372fa324a71ad5d4791f55e561',·1,·'gmx::SimulatorStateData']]],311 ····['enerdata_5fp_185',·['enerdata_p',·['../structgmx_1_1SimulatorStateData.xhtml#a44621b372fa324a71ad5d4791f55e561',·1,·'gmx::SimulatorStateData']]],
Offset 337, 16 lines modifiedOffset 337, 16 lines modified
337 ····['energycomparison_198',·['energycomparison',·['../classgmx_1_1test_1_1EnergyComparison.xhtml',·1,·'gmx::test::EnergyComparison'],337 ····['energycomparison_198',·['energycomparison',·['../classgmx_1_1test_1_1EnergyComparison.xhtml',·1,·'gmx::test::EnergyComparison'],
338 ········['../classgmx_1_1test_1_1EnergyComparison.xhtml#aafb2df8ef9a36c6a3cffc8ac57cf2645',·1,·'gmx::test::EnergyComparison::EnergyComparison()']338 ········['../classgmx_1_1test_1_1EnergyComparison.xhtml#aafb2df8ef9a36c6a3cffc8ac57cf2645',·1,·'gmx::test::EnergyComparison::EnergyComparison()']
339 ····]],339 ····]],
340 ····['energycomparison_2ecpp_199',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]],340 ····['energycomparison_2ecpp_199',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]],
341 ····['energycomparison_2eh_200',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]],341 ····['energycomparison_2eh_200',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]],
342 ····['energycomparison_5f_201',·['energyComparison_',·['../classgmx_1_1test_1_1PeriodicActionsTest.xhtml#accffb92e7241f0a2b319173bcc6e239a',·1,·'gmx::test::PeriodicActionsTest']]],342 ····['energycomparison_5f_201',·['energyComparison_',·['../classgmx_1_1test_1_1PeriodicActionsTest.xhtml#accffb92e7241f0a2b319173bcc6e239a',·1,·'gmx::test::PeriodicActionsTest']]],
343 ····['energycontribution_202',·['EnergyContribution',·['../namespacegmx.xhtml#a41036212ab3b994374d2c2f02772427c',·1,·'gmx']]],343 ····['energycontribution_202',·['EnergyContribution',·['../namespacegmx.xhtml#a41036212ab3b994374d2c2f02772427c',·1,·'gmx']]],
 344 ····['energydata_203',·['energydata',·['../classgmx_1_1EnergyData.xhtml',·1,·'gmx::EnergyData'],
344 ····['energydata_203',·['energydata',·['../classgmx_1_1EnergyData.xhtml#a15119585f028d3e0501e51fd4ab690b2',·1,·'gmx::EnergyData::EnergyData()'],345 ········['../classgmx_1_1EnergyData.xhtml#a15119585f028d3e0501e51fd4ab690b2',·1,·'gmx::EnergyData::EnergyData()']
345 ········['../classgmx_1_1EnergyData.xhtml',·1,·'gmx::EnergyData'] 
346 ····]],346 ····]],
347 ····['energydata_20tt_204',·['&lt;tt&gt;EnergyData&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md36',·1,·'']]],347 ····['energydata_20tt_204',·['&lt;tt&gt;EnergyData&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md36',·1,·'']]],
348 ····['energydata_2ecpp_205',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]],348 ····['energydata_2ecpp_205',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]],
349 ····['energydata_2eh_206',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]],349 ····['energydata_2eh_206',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]],
350 ····['energydata_3a_3aelement_20tt_207',·['&lt;tt&gt;EnergyData::Element&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md32',·1,·'']]],350 ····['energydata_3a_3aelement_20tt_207',·['&lt;tt&gt;EnergyData::Element&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md32',·1,·'']]],
351 ····['energydrift_208',·['energyDrift',·['../classgmx_1_1EnergyDriftTracker.xhtml#af7dcf448940396b29c3ffb9e935fee66',·1,·'gmx::EnergyDriftTracker']]],351 ····['energydrift_208',·['energyDrift',·['../classgmx_1_1EnergyDriftTracker.xhtml#af7dcf448940396b29c3ffb9e935fee66',·1,·'gmx::EnergyDriftTracker']]],
352 ····['energydriftstring_209',·['energyDriftString',·['../classgmx_1_1EnergyDriftTracker.xhtml#ae353361ca2765e1c7655c1862fb49723',·1,·'gmx::EnergyDriftTracker']]],352 ····['energydriftstring_209',·['energyDriftString',·['../classgmx_1_1EnergyDriftTracker.xhtml#ae353361ca2765e1c7655c1862fb49723',·1,·'gmx::EnergyDriftTracker']]],
Offset 912, 19 lines modifiedOffset 912, 19 lines modified
912 ····['expfit_2eh_555',·['expfit.h',·['../expfit_8h.xhtml',·1,·'']]],912 ····['expfit_2eh_555',·['expfit.h',·['../expfit_8h.xhtml',·1,·'']]],
913 ····['exponentialdistribution_556',·['exponentialdistribution',·['../classgmx_1_1ExponentialDistribution.xhtml#a5343846298b8a4472dca16925ecfea72',·1,·'gmx::ExponentialDistribution::ExponentialDistribution(result_type·lambda=1.0)'],913 ····['exponentialdistribution_556',·['exponentialdistribution',·['../classgmx_1_1ExponentialDistribution.xhtml#a5343846298b8a4472dca16925ecfea72',·1,·'gmx::ExponentialDistribution::ExponentialDistribution(result_type·lambda=1.0)'],
914 ········['../classgmx_1_1ExponentialDistribution.xhtml#ac05671078f935d10e725ea3a28e97892',·1,·'gmx::ExponentialDistribution::ExponentialDistribution(const·param_type·&amp;param)'],914 ········['../classgmx_1_1ExponentialDistribution.xhtml#ac05671078f935d10e725ea3a28e97892',·1,·'gmx::ExponentialDistribution::ExponentialDistribution(const·param_type·&amp;param)'],
915 ········['../classgmx_1_1ExponentialDistribution.xhtml',·1,·'gmx::ExponentialDistribution&lt;·RealType·&gt;']915 ········['../classgmx_1_1ExponentialDistribution.xhtml',·1,·'gmx::ExponentialDistribution&lt;·RealType·&gt;']
916 ····]],916 ····]],
917 ····['exponentialdistribution_2ecpp_557',·['exponentialdistribution.cpp',·['../exponentialdistribution_8cpp.xhtml',·1,·'']]],917 ····['exponentialdistribution_2ecpp_557',·['exponentialdistribution.cpp',·['../exponentialdistribution_8cpp.xhtml',·1,·'']]],
918 ····['exponentialdistribution_2eh_558',·['exponentialdistribution.h',·['../exponentialdistribution_8h.xhtml',·1,·'']]],918 ····['exponentialdistribution_2eh_558',·['exponentialdistribution.h',·['../exponentialdistribution_8h.xhtml',·1,·'']]],
919 ····['exponentialmovingaverage_559',·['exponentialmovingaverage',·['../classgmx_1_1ExponentialMovingAverage.xhtml',·1,·'gmx::ExponentialMovingAverage'],919 ····['exponentialmovingaverage_559',·['exponentialmovingaverage',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a2c184672771f47615b67e3b72dd79423',·1,·'gmx::ExponentialMovingAverage::ExponentialMovingAverage()'],
920 ········['../classgmx_1_1ExponentialMovingAverage.xhtml#a2c184672771f47615b67e3b72dd79423',·1,·'gmx::ExponentialMovingAverage::ExponentialMovingAverage()']920 ········['../classgmx_1_1ExponentialMovingAverage.xhtml',·1,·'gmx::ExponentialMovingAverage']
921 ····]],921 ····]],
922 ····['exponentialmovingaverage_2ecpp_560',·['exponentialmovingaverage.cpp',·['../exponentialmovingaverage_8cpp.xhtml',·1,·'(Global·Namespace)'],922 ····['exponentialmovingaverage_2ecpp_560',·['exponentialmovingaverage.cpp',·['../tests_2exponentialmovingaverage_8cpp.xhtml',·1,·'(Global·Namespace)'],
923 ········['../tests_2exponentialmovingaverage_8cpp.xhtml',·1,·'(Global·Namespace)']923 ········['../exponentialmovingaverage_8cpp.xhtml',·1,·'(Global·Namespace)']
924 ····]],924 ····]],
925 ····['exponentialmovingaverage_2eh_561',·['exponentialmovingaverage.h',·['../exponentialmovingaverage_8h.xhtml',·1,·'']]],925 ····['exponentialmovingaverage_2eh_561',·['exponentialmovingaverage.h',·['../exponentialmovingaverage_8h.xhtml',·1,·'']]],
926 ····['exponentialmovingaveragestate_562',·['ExponentialMovingAverageState',·['../structgmx_1_1ExponentialMovingAverageState.xhtml',·1,·'gmx']]],926 ····['exponentialmovingaveragestate_562',·['ExponentialMovingAverageState',·['../structgmx_1_1ExponentialMovingAverageState.xhtml',·1,·'gmx']]],
927 ····['exponentialmovingaveragestate_5f_563',·['exponentialMovingAverageState_',·['../structgmx_1_1DensityFittingForceProviderState.xhtml#a6f14bf9ea662f145cfa4cfc01b15bb97',·1,·'gmx::DensityFittingForceProviderState']]],927 ····['exponentialmovingaveragestate_5f_563',·['exponentialMovingAverageState_',·['../structgmx_1_1DensityFittingForceProviderState.xhtml#a6f14bf9ea662f145cfa4cfc01b15bb97',·1,·'gmx::DensityFittingForceProviderState']]],
928 ····['exponentialmovingaveragestateaskeyvaluetree_564',·['exponentialMovingAverageStateAsKeyValueTree',·['../namespacegmx.xhtml#a4fb56f226b415783122e3717d943e47e',·1,·'gmx']]],928 ····['exponentialmovingaveragestateaskeyvaluetree_564',·['exponentialMovingAverageStateAsKeyValueTree',·['../namespacegmx.xhtml#a4fb56f226b415783122e3717d943e47e',·1,·'gmx']]],
929 ····['exponentialmovingaveragestatefromkeyvaluetree_565',·['exponentialMovingAverageStateFromKeyValueTree',·['../namespacegmx.xhtml#a89ca8039bafc56d60c8bbce0d33960ae',·1,·'gmx']]],929 ····['exponentialmovingaveragestatefromkeyvaluetree_565',·['exponentialMovingAverageStateFromKeyValueTree',·['../namespacegmx.xhtml#a89ca8039bafc56d60c8bbce0d33960ae',·1,·'gmx']]],
930 ····['exponentialmovingaveragestatename_5f_566',·['exponentialMovingAverageStateName_',·['../structgmx_1_1DensityFittingForceProviderState.xhtml#ad2650124e0f716fd6c9119f7d72efe0e',·1,·'gmx::DensityFittingForceProviderState']]],930 ····['exponentialmovingaveragestatename_5f_566',·['exponentialMovingAverageStateName_',·['../structgmx_1_1DensityFittingForceProviderState.xhtml#ad2650124e0f716fd6c9119f7d72efe0e',·1,·'gmx::DensityFittingForceProviderState']]],
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3 ········['../structgmx__ana__pos__t.xhtml#a07da25c1695fd09c81eb8441ccdf7555',·1,·'gmx_ana_pos_t::f'], 
4 ········['../classgmx_1_1SelectionPosition.xhtml#a8fdc99a3a8760dfec8f0b26378c2cc8a',·1,·'gmx::SelectionPosition::f()'], 
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11 ········['../classgmx_1_1ImdSession_1_1Impl.xhtml#a3944dd08a0c5716ebd0691fbfb66d6a9',·1,·'gmx::ImdSession::Impl::f'], 
12 ········['../structgmx_1_1test_1_1anonymous__namespace_02nb__free__energy_8cpp_03_1_1OutputQuantities.xhtml#af691cb2adb40e7a78bd1f4adb11d3aa8',·1,·'gmx::test::anonymous_namespace{nb_free_energy.cpp}::OutputQuantities::f'], 
13 ········['../structgmx__pme__pp.xhtml#a088fcdaa020b75c5bc1bdf201ad55c32',·1,·'gmx_pme_pp::f'] 
14 ····]],14 ····]],
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16 ····['f_5frot_5floc_2',·['f_rot_loc',·['../structgmx__enfrotgrp.xhtml#a7315a01f64703f5b8fc100d76f6a6588',·1,·'gmx_enfrotgrp']]],16 ····['f_5frot_5floc_2',·['f_rot_loc',·['../structgmx__enfrotgrp.xhtml#a7315a01f64703f5b8fc100d76f6a6588',·1,·'gmx_enfrotgrp']]],
17 ····['factorize_3',·['factorize',·['../domdec__setup_8cpp.xhtml#a16e508bed9b154f301b87efa8a1ab1f4',·1,·'domdec_setup.cpp']]],17 ····['factorize_3',·['factorize',·['../domdec__setup_8cpp.xhtml#a16e508bed9b154f301b87efa8a1ab1f4',·1,·'domdec_setup.cpp']]],
18 ····['factorymethod_4',·['FactoryMethod',·['../classgmx_1_1ICommandLineOptionsModule.xhtml#a600f22ce0fca3bca1aaf672395e4778e',·1,·'gmx::ICommandLineOptionsModule']]],18 ····['factorymethod_4',·['FactoryMethod',·['../classgmx_1_1ICommandLineOptionsModule.xhtml#a600f22ce0fca3bca1aaf672395e4778e',·1,·'gmx::ICommandLineOptionsModule']]],
19 ····['fakempiallreduce_5',·['fakeMpiAllReduce',·['../classgmx_1_1test_1_1anonymous__namespace_02observablesreducer_8cpp_03_1_1ObservablesReducerIntegrationTest.xhtml#a9cf04ab11fa748eb8fa5bae03a6e8047',·1,·'gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest']]],19 ····['fakempiallreduce_5',·['fakeMpiAllReduce',·['../classgmx_1_1test_1_1anonymous__namespace_02observablesreducer_8cpp_03_1_1ObservablesReducerIntegrationTest.xhtml#a9cf04ab11fa748eb8fa5bae03a6e8047',·1,·'gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest']]],
20 ····['false_6',·['FALSE',·['../basedefinitions_8h.xhtml#aa93f0eb578d23995850d61f7d61c55c1',·1,·'basedefinitions.h']]],20 ····['false_6',·['FALSE',·['../basedefinitions_8h.xhtml#aa93f0eb578d23995850d61f7d61c55c1',·1,·'basedefinitions.h']]],
Offset 35, 34 lines modifiedOffset 35, 34 lines modified
35 ····['fcoords_17',·['FCoords',·['../namespacegmx.xhtml#aa72f45c17038ea5aae00ba6b17cab901a3450af452b893d21b872bbf8683b7df8',·1,·'gmx']]],35 ····['fcoords_17',·['FCoords',·['../namespacegmx.xhtml#aa72f45c17038ea5aae00ba6b17cab901a3450af452b893d21b872bbf8683b7df8',·1,·'gmx']]],
36 ····['feature_18',·['feature',·['../classgmx_1_1CpuInfo.xhtml#ac8981fb299411577dccba90b335a9085',·1,·'gmx::CpuInfo::Feature'],36 ····['feature_18',·['feature',·['../classgmx_1_1CpuInfo.xhtml#ac8981fb299411577dccba90b335a9085',·1,·'gmx::CpuInfo::Feature'],
37 ········['../classgmx_1_1CpuInfo.xhtml#a634410a544ba8fb20dfd94f53e7cb27f',·1,·'gmx::CpuInfo::feature(Feature·f)·const']37 ········['../classgmx_1_1CpuInfo.xhtml#a634410a544ba8fb20dfd94f53e7cb27f',·1,·'gmx::CpuInfo::feature(Feature·f)·const']
38 ····]],38 ····]],
39 ····['features_19',·['Features',·['../classgmx_1_1CpuInfo.xhtml#a07f2b126c9ee81ac1577b49b18b0bed6a98f770b0af18ca763421bac22b4b6805',·1,·'gmx::CpuInfo']]],39 ····['features_19',·['Features',·['../classgmx_1_1CpuInfo.xhtml#a07f2b126c9ee81ac1577b49b18b0bed6a98f770b0af18ca763421bac22b4b6805',·1,·'gmx::CpuInfo']]],
40 ····['featureset_20',·['featureSet',·['../classgmx_1_1CpuInfo.xhtml#ac826abf4d614f73e5d8c7d2958ce30e6',·1,·'gmx::CpuInfo']]],40 ····['featureset_20',·['featureSet',·['../classgmx_1_1CpuInfo.xhtml#ac826abf4d614f73e5d8c7d2958ce30e6',·1,·'gmx::CpuInfo']]],
41 ····['featurestring_21',·['featureString',·['../classgmx_1_1CpuInfo.xhtml#a261a17115d44f8e4e866ec920da62b67',·1,·'gmx::CpuInfo']]],41 ····['featurestring_21',·['featureString',·['../classgmx_1_1CpuInfo.xhtml#a261a17115d44f8e4e866ec920da62b67',·1,·'gmx::CpuInfo']]],
 42 ····['fep_22',·['fep',·['../structgmx_1_1test_1_1anonymous__namespace_02pairs_8cpp_03_1_1ListInput.xhtml#a3984084d8090abf3c5b0805c5ff7ca9e',·1,·'gmx::test::anonymous_namespace{pairs.cpp}::ListInput::fep'],
42 ····['fep_22',·['fep',·['../structgmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03_1_1iListInput.xhtml#aa0cfe0cf8a902a682bd67e199cc7483b',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::iListInput::fep'],43 ········['../structgmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03_1_1iListInput.xhtml#aa0cfe0cf8a902a682bd67e199cc7483b',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::iListInput::fep']
43 ········['../structgmx_1_1test_1_1anonymous__namespace_02pairs_8cpp_03_1_1ListInput.xhtml#a3984084d8090abf3c5b0805c5ff7ca9e',·1,·'gmx::test::anonymous_namespace{pairs.cpp}::ListInput::fep'] 
44 ····]],44 ····]],
45 ····['fep_5fstate_23',·['fep_state',·['../classt__state.xhtml#a1a50c4a421790dc5a2bec971c4fccca4',·1,·'t_state::fep_state'], 
46 ········['../structTpxFileHeader.xhtml#a3e6d181da70f5976a240943c94d74969',·1,·'TpxFileHeader::fep_state']45 ····['fep_5fstate_23',·['fep_state',·['../structTpxFileHeader.xhtml#a3e6d181da70f5976a240943c94d74969',·1,·'TpxFileHeader::fep_state'],
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47 ····]],47 ····]],
48 ····['fep_5fstate_5fa_24',·['FEP_STATE_A',·['../pme__gpu__internal_8h.xhtml#a6e686cf9fadaac1ce39b08416f7614da',·1,·'pme_gpu_internal.h']]],48 ····['fep_5fstate_5fa_24',·['FEP_STATE_A',·['../pme__gpu__internal_8h.xhtml#a6e686cf9fadaac1ce39b08416f7614da',·1,·'pme_gpu_internal.h']]],
49 ····['fep_5fstate_5fb_25',·['FEP_STATE_B',·['../pme__gpu__internal_8h.xhtml#ae6dd68494c14b66f86ff58a5e0a1aa93',·1,·'pme_gpu_internal.h']]],49 ····['fep_5fstate_5fb_25',·['FEP_STATE_B',·['../pme__gpu__internal_8h.xhtml#ae6dd68494c14b66f86ff58a5e0a1aa93',·1,·'pme_gpu_internal.h']]],
50 ····['fepbits_26',·['fepBits',·['../classNbnxm_1_1Grid.xhtml#aca022470760db2366778f8df87e42279',·1,·'Nbnxm::Grid']]],50 ····['fepbits_26',·['fepBits',·['../classNbnxm_1_1Grid.xhtml#aca022470760db2366778f8df87e42279',·1,·'Nbnxm::Grid']]],
51 ····['fepdimparams_27',·['fepdimparams',·['../structgmx_1_1DimParams_1_1FepDimParams.xhtml',·1,·'gmx::DimParams::FepDimParams'], 
52 ········['../structgmx_1_1DimParams.xhtml#aaddac033528c91ab831c36981ad0bf12',·1,·'gmx::DimParams::fepDimParams()·const']51 ····['fepdimparams_27',·['fepdimparams',·['../structgmx_1_1DimParams.xhtml#aaddac033528c91ab831c36981ad0bf12',·1,·'gmx::DimParams::fepDimParams()·const'],
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53 ····]],53 ····]],
54 ····['feplambdadimparams_28',·['fepLambdaDimParams',·['../structgmx_1_1DimParams.xhtml#a7dc64a12c8e1081550e64f355b5a0682',·1,·'gmx::DimParams']]],54 ····['feplambdadimparams_28',·['fepLambdaDimParams',·['../structgmx_1_1DimParams.xhtml#a7dc64a12c8e1081550e64f355b5a0682',·1,·'gmx::DimParams']]],
55 ····['feplambdastate_29',·['fepLambdaState',·['../classgmx_1_1Awh.xhtml#adfc3a70dde1b72c20abe5688cf98d4ba',·1,·'gmx::Awh']]],55 ····['feplambdastate_29',·['fepLambdaState',·['../classgmx_1_1Awh.xhtml#adfc3a70dde1b72c20abe5688cf98d4ba',·1,·'gmx::Awh']]],
56 ····['feplists_30',·['fepLists',·['../classPairlistSet.xhtml#a8ffe01f1e7b00537e05273e79afd8d7a',·1,·'PairlistSet']]],56 ····['feplists_30',·['fepLists',·['../classPairlistSet.xhtml#a8ffe01f1e7b00537e05273e79afd8d7a',·1,·'PairlistSet']]],
57 ····['fepstatesetting_31',·['FepStateSetting',·['../classgmx_1_1FepStateSetting.xhtml',·1,·'gmx']]],57 ····['fepstatesetting_31',·['FepStateSetting',·['../classgmx_1_1FepStateSetting.xhtml',·1,·'gmx']]],
58 ····['fepstatevalue_32',·['fepstatevalue',·['../structFEPStateValue.xhtml',·1,·'FEPStateValue&lt;·T·&gt;'], 
59 ········['../structFEPStateValue.xhtml#a638b5206f78383252ae56f4a257fb922',·1,·'FEPStateValue::FEPStateValue()=default'],58 ····['fepstatevalue_32',·['fepstatevalue',·['../structFEPStateValue.xhtml#a638b5206f78383252ae56f4a257fb922',·1,·'FEPStateValue::FEPStateValue()=default'],
60 ········['../structFEPStateValue.xhtml#ae45c0dca25a0b1b48a68c10767d59483',·1,·'FEPStateValue::FEPStateValue(T·value)'],59 ········['../structFEPStateValue.xhtml#ae45c0dca25a0b1b48a68c10767d59483',·1,·'FEPStateValue::FEPStateValue(T·value)'],
61 ········['../structFEPStateValue.xhtml#ad203d2ae99649841dd5ecd72f015167a',·1,·'FEPStateValue::FEPStateValue(T·valueA,·T·valueB)']60 ········['../structFEPStateValue.xhtml#ad203d2ae99649841dd5ecd72f015167a',·1,·'FEPStateValue::FEPStateValue(T·valueA,·T·valueB)'],
 61 ········['../structFEPStateValue.xhtml',·1,·'FEPStateValue&lt;·T·&gt;']
62 ····]],62 ····]],
63 ····['fepstatevalue_3c_20nameholder_20_3e_33',·['FEPStateValue&lt;·NameHolder·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],63 ····['fepstatevalue_3c_20nameholder_20_3e_33',·['FEPStateValue&lt;·NameHolder·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],
64 ····['fepstatevalue_3c_20real_20_3e_34',·['FEPStateValue&lt;·real·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],64 ····['fepstatevalue_3c_20real_20_3e_34',·['FEPStateValue&lt;·real·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],
65 ····['fepstatevalue_3c_20unsigned_20short_20_3e_35',·['FEPStateValue&lt;·unsigned·short·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],65 ····['fepstatevalue_3c_20unsigned_20short_20_3e_35',·['FEPStateValue&lt;·unsigned·short·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],
66 ····['fetchnextevent_36',·['fetchnextevent',·['../classGpuRegionTimerImpl.xhtml#ace9b9965e5b0dec64d5d74af36035a63',·1,·'GpuRegionTimerImpl::fetchNextEvent()'],66 ····['fetchnextevent_36',·['fetchnextevent',·['../classGpuRegionTimerImpl.xhtml#ace9b9965e5b0dec64d5d74af36035a63',·1,·'GpuRegionTimerImpl::fetchNextEvent()'],
67 ········['../classGpuRegionTimerWrapper.xhtml#ae595ce381d09845166643647caf6b539',·1,·'GpuRegionTimerWrapper::fetchNextEvent()']67 ········['../classGpuRegionTimerWrapper.xhtml#ae595ce381d09845166643647caf6b539',·1,·'GpuRegionTimerWrapper::fetchNextEvent()']
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135 ····['filenameoptioninfo_85',·['filenameoptioninfo',·['../classgmx_1_1FileNameOptionInfo.xhtml#a90b3bff35cc93cf1efeedb70532f9f87',·1,·'gmx::FileNameOptionInfo::FileNameOptionInfo()'],136 ········['../classgmx_1_1FileNameOptionInfo.xhtml#a90b3bff35cc93cf1efeedb70532f9f87',·1,·'gmx::FileNameOptionInfo::FileNameOptionInfo()']
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133 ····['generatediagonalmasks_73',·['generateDiagonalMasks',·['../namespacegmx.xhtml#a75902569a0fdfb00cfa10f4d063eed7d',·1,·'gmx']]],133 ····['generatediagonalmasks_73',·['generateDiagonalMasks',·['../namespacegmx.xhtml#a75902569a0fdfb00cfa10f4d063eed7d',·1,·'gmx']]],
134 ····['generateewaldcorrectiontables_74',·['generateEwaldCorrectionTables',·['../forcetable_8h.xhtml#a09f7b6c414c61fe59569916d4106beb2',·1,·'forcetable.cpp']]],134 ····['generateewaldcorrectiontables_74',·['generateEwaldCorrectionTables',·['../forcetable_8h.xhtml#a09f7b6c414c61fe59569916d4106beb2',·1,·'forcetable.cpp']]],
135 ····['generic_75',·['Generic',·['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0ca8045a0a6c688b0635e3caccc408a1446',·1,·'gmx']]],135 ····['generic_75',·['Generic',·['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0ca8045a0a6c688b0635e3caccc408a1446',·1,·'gmx']]],
136 ····['genion_2ecpp_76',·['genion.cpp',·['../tests_2genion_8cpp.xhtml',·1,·'']]],136 ····['genion_2ecpp_76',·['genion.cpp',·['../tests_2genion_8cpp.xhtml',·1,·'']]],
137 ····['genqmmmindices_77',·['genQmmmIndices',·['../src_2gromacs_2mimic_2utilities_8h.xhtml#ac8c92f4d2b6d6276c25ae95682de13aa',·1,·'utilities.cpp']]],137 ····['genqmmmindices_77',·['genQmmmIndices',·['../src_2gromacs_2mimic_2utilities_8h.xhtml#ac8c92f4d2b6d6276c25ae95682de13aa',·1,·'utilities.cpp']]],
138 ····['genrestr_2ecpp_78',·['genrestr.cpp',·['../tests_2genrestr_8cpp.xhtml',·1,·'']]],138 ····['genrestr_2ecpp_78',·['genrestr.cpp',·['../tests_2genrestr_8cpp.xhtml',·1,·'']]],
139 ····['geometric_79',·['Geometric',·['../atomdata_8h.xhtml#a545339c6bb2aa8f6195b8ac73569cbf8aadf9f772a73f364e4ce6c52b9fae740d',·1,·'atomdata.h']]],139 ····['geometric_79',·['Geometric',·['../atomdata_8h.xhtml#a545339c6bb2aa8f6195b8ac73569cbf8aadf9f772a73f364e4ce6c52b9fae740d',·1,·'atomdata.h']]],
 140 ····['geometry_80',·['geometry',·['../structNbnxm_1_1Grid_1_1Geometry.xhtml',·1,·'Nbnxm::Grid::Geometry'],
140 ····['geometry_80',·['geometry',·['../structNbnxm_1_1Grid_1_1Geometry.xhtml#a8d9a96a8fdb5462123ab8b2a872d2010',·1,·'Nbnxm::Grid::Geometry::Geometry()'],141 ········['../structNbnxm_1_1Grid_1_1Geometry.xhtml#a8d9a96a8fdb5462123ab8b2a872d2010',·1,·'Nbnxm::Grid::Geometry::Geometry()'],
141 ········['../structt__pullcoord.xhtml#ab8bb3edab80d37b6b59871a5687f3957',·1,·'t_pullcoord::geometry'],142 ········['../structt__pullcoord.xhtml#ab8bb3edab80d37b6b59871a5687f3957',·1,·'t_pullcoord::geometry'],
142 ········['../classNbnxm_1_1Grid.xhtml#a6fa53ffa6e33e4a900ff246131cc0972',·1,·'Nbnxm::Grid::geometry()·const'],143 ········['../classNbnxm_1_1Grid.xhtml#a6fa53ffa6e33e4a900ff246131cc0972',·1,·'Nbnxm::Grid::geometry()']
143 ········['../structNbnxm_1_1Grid_1_1Geometry.xhtml',·1,·'Nbnxm::Grid::Geometry'] 
144 ····]],144 ····]],
145 ····['get_81',·['get',·['../parser__internal_8h.xhtml#a0c1fffb107955e3a6c98e6a8d44bc66b',·1,·'get():&#160;parser_internal.h'], 
146 ········['../classgmx_1_1GlobalCommandLineHelpContext.xhtml#aaea9dd06988d683d99e633f946d7ad6e',·1,·'gmx::GlobalCommandLineHelpContext::get()'],145 ····['get_81',·['get',·['../classgmx_1_1GlobalCommandLineHelpContext.xhtml#aaea9dd06988d683d99e633f946d7ad6e',·1,·'gmx::GlobalCommandLineHelpContext::get()'],
147 ········['../classgmx_1_1compat_1_1not__null.xhtml#a71e17ffb21e59c1bd4317025e353e85d',·1,·'gmx::compat::not_null::get()'],146 ········['../classgmx_1_1compat_1_1not__null.xhtml#a71e17ffb21e59c1bd4317025e353e85d',·1,·'gmx::compat::not_null::get()'],
148 ········['../classgmx_1_1SimulationInputHandle.xhtml#a9a5f2eeb74fc6dd0cad1ab613c5ffe55',·1,·'gmx::SimulationInputHandle::get()'],147 ········['../classgmx_1_1SimulationInputHandle.xhtml#a9a5f2eeb74fc6dd0cad1ab613c5ffe55',·1,·'gmx::SimulationInputHandle::get()'],
149 ········['../classgmx_1_1OptionManagerContainer.xhtml#aa4ccc4fe6ad95d34d0ac3ad64c99f3dd',·1,·'gmx::OptionManagerContainer::get()']148 ········['../classgmx_1_1OptionManagerContainer.xhtml#aa4ccc4fe6ad95d34d0ac3ad64c99f3dd',·1,·'gmx::OptionManagerContainer::get()'],
 149 ········['../parser__internal_8h.xhtml#a0c1fffb107955e3a6c98e6a8d44bc66b',·1,·'get(ValueType·*src):&#160;parser_internal.h']
150 ····]],150 ····]],
151 ····['get_5f2log_82',·['get_2log',·['../nbnxm__geometry_8h.xhtml#a8395e4ac753290707b9f0089b712c287',·1,·'nbnxm_geometry.h']]],151 ····['get_5f2log_82',·['get_2log',·['../nbnxm__geometry_8h.xhtml#a8395e4ac753290707b9f0089b712c287',·1,·'nbnxm_geometry.h']]],
152 ····['get_5fa_5fline_83',·['get_a_line',·['../strdb_8h.xhtml#a0cd472153523204686e891341870765e',·1,·'strdb.cpp']]],152 ····['get_5fa_5fline_83',·['get_a_line',·['../strdb_8h.xhtml#a0cd472153523204686e891341870765e',·1,·'strdb.cpp']]],
153 ····['get_5facffitfn_84',·['get_acffitfn',·['../autocorr_8cpp.xhtml#ae8203eca8a282a6a6c3193eb7434e740',·1,·'get_acffitfn():&#160;autocorr.cpp'],153 ····['get_5facffitfn_84',·['get_acffitfn',·['../autocorr_8h.xhtml#ae8203eca8a282a6a6c3193eb7434e740',·1,·'get_acffitfn():&#160;autocorr.cpp'],
154 ········['../autocorr_8h.xhtml#ae8203eca8a282a6a6c3193eb7434e740',·1,·'get_acffitfn():&#160;autocorr.cpp']154 ········['../autocorr_8cpp.xhtml#ae8203eca8a282a6a6c3193eb7434e740',·1,·'get_acffitfn():&#160;autocorr.cpp']
155 ····]],155 ····]],
156 ····['get_5facfnout_85',·['get_acfnout',·['../autocorr_8h.xhtml#a6ffe718811a1de496d0d03c2110907ca',·1,·'get_acfnout():&#160;autocorr.cpp'],156 ····['get_5facfnout_85',·['get_acfnout',·['../autocorr_8h.xhtml#a6ffe718811a1de496d0d03c2110907ca',·1,·'get_acfnout():&#160;autocorr.cpp'],
157 ········['../autocorr_8cpp.xhtml#a6ffe718811a1de496d0d03c2110907ca',·1,·'get_acfnout():&#160;autocorr.cpp']157 ········['../autocorr_8cpp.xhtml#a6ffe718811a1de496d0d03c2110907ca',·1,·'get_acfnout():&#160;autocorr.cpp']
158 ····]],158 ····]],
159 ····['get_5fallocator_86',·['get_allocator',·['../classgmx_1_1PaddedVector.xhtml#a0bae42a82df682e19ac61bc89a6a022a',·1,·'gmx::PaddedVector']]],159 ····['get_5fallocator_86',·['get_allocator',·['../classgmx_1_1PaddedVector.xhtml#a0bae42a82df682e19ac61bc89a6a022a',·1,·'gmx::PaddedVector']]],
160 ····['get_5fcenter_87',·['get_center',·['../groupcoord_8h.xhtml#ac732a95420f31b9a44c7a4abfc371357',·1,·'groupcoord.cpp']]],160 ····['get_5fcenter_87',·['get_center',·['../groupcoord_8h.xhtml#ac732a95420f31b9a44c7a4abfc371357',·1,·'groupcoord.cpp']]],
161 ····['get_5fcenter_5fcomm_88',·['get_center_comm',·['../groupcoord_8h.xhtml#a2018383475eefe6a12a0f43a4bf12741',·1,·'groupcoord.cpp']]],161 ····['get_5fcenter_5fcomm_88',·['get_center_comm',·['../groupcoord_8h.xhtml#a2018383475eefe6a12a0f43a4bf12741',·1,·'groupcoord.cpp']]],
Offset 169, 26 lines modifiedOffset 169, 26 lines modified
169 ····['get_5fheader_94',·['get_header',·['../strdb_8h.xhtml#ae5fc76eb98da3f1abcb12cc2b8e3ae99',·1,·'strdb.h']]],169 ····['get_5fheader_94',·['get_header',·['../strdb_8h.xhtml#ae5fc76eb98da3f1abcb12cc2b8e3ae99',·1,·'strdb.h']]],
170 ····['get_5findex_5fof_5fdistant_5fatom_95',·['get_index_of_distant_atom',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#aee789cd0e8c00d7ea9bbc4ca285cb993',·1,·'swapcoords.cpp']]],170 ····['get_5findex_5fof_5fdistant_5fatom_95',·['get_index_of_distant_atom',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#aee789cd0e8c00d7ea9bbc4ca285cb993',·1,·'swapcoords.cpp']]],
171 ····['get_5finitial_5fioncounts_96',·['get_initial_ioncounts',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a2ba5c82e0b901b0d2bc8190f9fb1d1bb',·1,·'swapcoords.cpp']]],171 ····['get_5finitial_5fioncounts_96',·['get_initial_ioncounts',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a2ba5c82e0b901b0d2bc8190f9fb1d1bb',·1,·'swapcoords.cpp']]],
172 ····['get_5finitial_5fioncounts_5ffrom_5fcpt_97',·['get_initial_ioncounts_from_cpt',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a63688a2d96a14be60358babedf842922',·1,·'swapcoords.cpp']]],172 ····['get_5finitial_5fioncounts_5ffrom_5fcpt_97',·['get_initial_ioncounts_from_cpt',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a63688a2d96a14be60358babedf842922',·1,·'swapcoords.cpp']]],
173 ····['get_5flines_98',·['get_lines',·['../strdb_8h.xhtml#a2884ae147bf969857d0440177a5ea006',·1,·'strdb.cpp']]],173 ····['get_5flines_98',·['get_lines',·['../strdb_8h.xhtml#a2884ae147bf969857d0440177a5ea006',·1,·'strdb.cpp']]],
174 ····['get_5fload_5fdistribution_99',·['get_load_distribution',·['../partition_8cpp.xhtml#ae1715b06b973f0a5bb1f6a5d66326008',·1,·'partition.cpp']]],174 ····['get_5fload_5fdistribution_99',·['get_load_distribution',·['../partition_8cpp.xhtml#ae1715b06b973f0a5bb1f6a5d66326008',·1,·'partition.cpp']]],
175 ····['get_5fmolecule_5fcenter_100',·['get_molecule_center',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#af701b0cff97e0453bc279d86d0ba0673',·1,·'swapcoords.cpp']]],175 ····['get_5fmolecule_5fcenter_100',·['get_molecule_center',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#af701b0cff97e0453bc279d86d0ba0673',·1,·'swapcoords.cpp']]],
176 ····['get_5fnthreads_5fmpi_101',·['get_nthreads_mpi',·['../resourcedivision_8h.xhtml#a66226e873ab77ec209707cc33ad9870c',·1,·'get_nthreads_mpi(const·gmx_hw_info_t·*hwinfo,·gmx_hw_opt_t·*hw_opt,·int·numDevicesToUse,·bool·nonbondedOnGpu,·bool·pmeOnGpu,·const·t_inputrec·*inputrec,·const·gmx_mtop_t·&amp;mtop,·const·gmx::MDLogger·&amp;mdlog,·bool·doMembed):&#160;resourcedivision.cpp'], 
177 ········['../resourcedivision_8cpp.xhtml#a6469a412f67d5ae5b8dddad1b49c1760',·1,·'get_nthreads_mpi(const·gmx_hw_info_t·*hwinfo,·gmx_hw_opt_t·*hw_opt,·const·int·numDevicesToUse,·bool·nonbondedOnGpu,·bool·pmeOnGpu,·const·t_inputrec·*inputrec,·const·gmx_mtop_t·&am[·...·truncated·by·diffoscope;·len:·83,·SHA:·d45e9fdecad1ee41ddef1bb6c833ca7c6b05c4672768e12b7346965e12400b8e·...·]176 ····['get_5fnthreads_5fmpi_101',·['get_nthreads_mpi',·['../resourcedivision_8cpp.xhtml#a6469a412f67d5ae5b8dddad1b49c1760',·1,·'get_nthreads_mpi(const·gmx_hw_info_t·*hwinfo,·gmx_hw_opt_t·*hw_opt,·const·int·numDevicesToUse,·bool·nonbondedOnGpu,·bool·pmeOnGpu,·co[·...·truncated·by·diffoscope;·len:·130,·SHA:·e06d2fa40159e9fab554ccd68b4c060ee7e9c8acce9939d12742e24a2b04d3e8·...·]
 177 ········['../resourcedivision_8h.xhtml#a66226e873ab77ec209707cc33ad9870c',·1,·'get_nthreads_mpi(const·gmx_hw_info_t·*hwinfo,·gmx_hw_opt_t·*hw_opt,·int·numDevicesToUse,·bool·nonbondedOnGpu,·bool·pmeOnGpu,·const·t_inputrec·*inputrec,·const·gmx_mtop_t·&amp;mtop,·const·gmx::MDLogger·&amp;mdlog,·bool·doMembed):&#160;resourcedivision.cpp']
178 ····]],178 ····]],
179 ····['get_5fpme_5fddranks_102',·['get_pme_ddranks',·['../domdec_8h.xhtml#a714c31f22cc831f99d57429e1318a98b',·1,·'domdec.cpp']]],179 ····['get_5fpme_5fddranks_102',·['get_pme_ddranks',·['../domdec_8h.xhtml#a714c31f22cc831f99d57429e1318a98b',·1,·'domdec.cpp']]],
180 ····['get_5fpull_5fcoord_5fperiod_103',·['get_pull_coord_period',·['../namespacegmx.xhtml#a3fbbd26eeea7fa3fe68cec28833d769a',·1,·'gmx']]],180 ····['get_5fpull_5fcoord_5fperiod_103',·['get_pull_coord_period',·['../namespacegmx.xhtml#a3fbbd26eeea7fa3fe68cec28833d769a',·1,·'gmx']]],
181 ····['get_5fpull_5fcoord_5fvalue_104',·['get_pull_coord_value',·['../pull_8h.xhtml#a14d101ec0687b9a06ab451974cb11565',·1,·'get_pull_coord_value(pull_t·*pull,·int·coordIndex,·const·t_pbc·&amp;pbc):&#160;pull.cpp'],181 ····['get_5fpull_5fcoord_5fvalue_104',·['get_pull_coord_value',·['../pull_8h.xhtml#a14d101ec0687b9a06ab451974cb11565',·1,·'get_pull_coord_value(pull_t·*pull,·int·coordIndex,·const·t_pbc·&amp;pbc):&#160;pull.cpp'],
182 ········['../pull_8h.xhtml#a61e53982ac9cc752ddb8f7128a614fb7',·1,·'get_pull_coord_value(pull_t·*pull,·int·coordIndex,·const·t_pbc·&amp;pbc,·double·t):&#160;pull.cpp']182 ········['../pull_8h.xhtml#a61e53982ac9cc752ddb8f7128a614fb7',·1,·'get_pull_coord_value(pull_t·*pull,·int·coordIndex,·const·t_pbc·&amp;pbc,·double·t):&#160;pull.cpp']
183 ····]],183 ····]],
184 ····['get_5fstate_5ff_5fnorm_5fmax_105',·['get_state_f_norm_max',·['../gromacs_2mdrun_2minimize_8cpp.xhtml#a23699473bd2831abaa740414edb895df',·1,·'minimize.cpp']]],184 ····['get_5fstate_5ff_5fnorm_5fmax_105',·['get_state_f_norm_max',·['../gromacs_2mdrun_2minimize_8cpp.xhtml#a23699473bd2831abaa740414edb895df',·1,·'minimize.cpp']]],
185 ····['get_5fsum_5fof_5fpositions_106',·['get_sum_of_positions',·['../groupcoord_8h.xhtml#a5dd8cc38de6142734f8f7ea30a75d192',·1,·'groupcoord.cpp']]],185 ····['get_5fsum_5fof_5fpositions_106',·['get_sum_of_positions',·['../groupcoord_8h.xhtml#a5dd8cc38de6142734f8f7ea30a75d192',·1,·'groupcoord.cpp']]],
186 ····['get_5fsymtab_5fhandle_107',·['get_symtab_handle',·['../symtab_8h.xhtml#a8a1d044b280872eae269d4482a4f9c25',·1,·'get_symtab_handle(t_symtab·*symtab,·int·index):&#160;symtab.cpp'],186 ····['get_5fsymtab_5fhandle_107',·['get_symtab_handle',·['../symtab_8cpp.xhtml#a93dd26914c3871561eeee41a50634a9e',·1,·'get_symtab_handle(t_symtab·*symtab,·int·name):&#160;symtab.cpp'],
187 ········['../symtab_8cpp.xhtml#a93dd26914c3871561eeee41a50634a9e',·1,·'get_symtab_handle(t_symtab·*symtab,·int·name):&#160;symtab.cpp']187 ········['../symtab_8h.xhtml#a8a1d044b280872eae269d4482a4f9c25',·1,·'get_symtab_handle(t_symtab·*symtab,·int·index):&#160;symtab.cpp']
188 ····]],188 ····]],
189 ····['get_5ftmpi_5fomp_5fthread_5fdivision_108',·['get_tmpi_omp_thread_division',·['../resourcedivision_8cpp.xhtml#aeaaeaf817243af7a71a9d73bf0003d89',·1,·'resourcedivision.cpp']]],189 ····['get_5ftmpi_5fomp_5fthread_5fdivision_108',·['get_tmpi_omp_thread_division',·['../resourcedivision_8cpp.xhtml#aeaaeaf817243af7a71a9d73bf0003d89',·1,·'resourcedivision.cpp']]],
190 ····['get_5fzone_5fpulse_5fgroups_109',·['get_zone_pulse_groups',·['../partition_8cpp.xhtml#a06a53f0dd4d8e35e2626e157095a1f9f',·1,·'partition.cpp']]],190 ····['get_5fzone_5fpulse_5fgroups_109',·['get_zone_pulse_groups',·['../partition_8cpp.xhtml#a06a53f0dd4d8e35e2626e157095a1f9f',·1,·'partition.cpp']]],
191 ····['getadapters_110',·['getAdapters',·['../classgmx_1_1OutputAdapterContainer.xhtml#a2b47d075acb351480698317588de9973',·1,·'gmx::OutputAdapterContainer']]],191 ····['getadapters_110',·['getAdapters',·['../classgmx_1_1OutputAdapterContainer.xhtml#a2b47d075acb351480698317588de9973',·1,·'gmx::OutputAdapterContainer']]],
192 ····['getandersenrandomizegroup_111',·['getAndersenRandomizeGroup',·['../classgmx_1_1Update.xhtml#abf212e8923e69307e50782802c65aa3d',·1,·'gmx::Update']]],192 ····['getandersenrandomizegroup_111',·['getAndersenRandomizeGroup',·['../classgmx_1_1Update.xhtml#abf212e8923e69307e50782802c65aa3d',·1,·'gmx::Update']]],
193 ····['getangleindices_112',·['getAngleIndices',·['../namespacegmx.xhtml#a3ba035f8e8a15443a11a30d74eb001e4',·1,·'gmx']]],193 ····['getangleindices_112',·['getAngleIndices',·['../namespacegmx.xhtml#a3ba035f8e8a15443a11a30d74eb001e4',·1,·'gmx']]],
194 ····['getatomcount_113',·['getAtomCount',·['../classgmx_1_1ITopologyProvider.xhtml#a81d60993ea70526c014ff8d2ba99e197',·1,·'gmx::ITopologyProvider']]],194 ····['getatomcount_113',·['getAtomCount',·['../classgmx_1_1ITopologyProvider.xhtml#a81d60993ea70526c014ff8d2ba99e197',·1,·'gmx::ITopologyProvider']]],
Offset 252, 24 lines modifiedOffset 252, 24 lines modified
252 ····]],252 ····]],
253 ····['getdevicewarpsize_148',·['getDeviceWarpSize',·['../ocl__compiler_8cpp.xhtml#a911aa023e88303869d874e26bc162057',·1,·'gmx::ocl']]],253 ····['getdevicewarpsize_148',·['getDeviceWarpSize',·['../ocl__compiler_8cpp.xhtml#a911aa023e88303869d874e26bc162057',·1,·'gmx::ocl']]],
254 ····['getdynamicextents3d_149',·['getDynamicExtents3D',·['../namespacegmx.xhtml#a3879d776773e80fbc6be26f596830036',·1,·'gmx']]],254 ····['getdynamicextents3d_149',·['getDynamicExtents3D',·['../namespacegmx.xhtml#a3879d776773e80fbc6be26f596830036',·1,·'gmx']]],
255 ····['getelementpointer_150',·['getElementPointer',·['../namespacegmx.xhtml#aaa8459a3b8ee4373d69727cfed3f0c3e',·1,·'gmx']]],255 ····['getelementpointer_150',·['getElementPointer',·['../namespacegmx.xhtml#aaa8459a3b8ee4373d69727cfed3f0c3e',·1,·'gmx']]],
256 ····['getelementpointerimpl_151',·['getelementpointerimpl',·['../classgmx_1_1ExpandedEnsembleElement.xhtml#ab6cb5fcc0b7453e7606829702ce6560e',·1,·'gmx::ExpandedEnsembleElement::getElementPointerImpl()'],256 ····['getelementpointerimpl_151',·['getelementpointerimpl',·['../classgmx_1_1ExpandedEnsembleElement.xhtml#ab6cb5fcc0b7453e7606829702ce6560e',·1,·'gmx::ExpandedEnsembleElement::getElementPointerImpl()'],
257 ········['../classgmx_1_1AndersenTemperatureCoupling.xhtml#a2b89b3ec000e03a22c9956a41c625d96',·1,·'gmx::AndersenTemperatureCoupling::getElementPointerImpl()'],257 ········['../classgmx_1_1AndersenTemperatureCoupling.xhtml#a2b89b3ec000e03a22c9956a41c625d96',·1,·'gmx::AndersenTemperatureCoupling::getElementPointerImpl()'],
258 ········['../classgmx_1_1ComputeGlobalsElement.xhtml#a63a731ca4083fd3c337e46b71598f167',·1,·'gmx::ComputeGlobalsElement::getElementPointerImpl()'],258 ········['../classgmx_1_1ComputeGlobalsElement.xhtml#a63a731ca4083fd3c337e46b71598f167',·1,·'gmx::ComputeGlobalsElement::getElementPointerImpl()'],
259 ········['../classgmx_1_1MttkElement.xhtml#a794ef7d86700bef9f2975129ede52724',·1,·'gmx::MttkElement::getElementPointerImpl()'],259 ········['../classgmx_1_1ConstraintsElement.xhtml#ae06c310ad838f8349b871c005f9d3b3c',·1,·'gmx::ConstraintsElement::getElementPointerImpl()'],
260 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#a37385de54eee1d21276db9a43b7812fa',·1,·'gmx::StatePropagatorData::Element::getElementPointerImpl()'],260 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#a37385de54eee1d21276db9a43b7812fa',·1,·'gmx::StatePropagatorData::Element::getElementPointerImpl()'],
261 ········['../classgmx_1_1PullElement.xhtml#a53980d2234de0833d5e60633293b8481',·1,·'gmx::PullElement::getElementPointerImpl()'],261 ········['../classgmx_1_1PullElement.xhtml#a53980d2234de0833d5e60633293b8481',·1,·'gmx::PullElement::getElementPointerImpl()'],
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263 ········['../classgmx_1_1Propagator.xhtml#a258b129ddc3b062d1dfaea532be87174',·1,·'gmx::Propagator::getElementPointerImpl(LegacySimulatorData·*legacySimulatorData,·ModularSimulatorAlgorithmBuilderHelper·*builderHelper,·StatePropagatorData·*statePropagatorData,·EnergyData·*energyData,·FreeEnergyPerturbationData·*freeEnergyPerturbationData,·GlobalCommunicationHelper·*globalCommunicationHelper,·ObservablesReducer·*observablesReducer,·const·PropagatorTag·&amp;propagatorTag,·TimeStep·timestep)'],263 ········['../classgmx_1_1Propagator.xhtml#a258b129ddc3b062d1dfaea532be87174',·1,·'gmx::Propagator::getElementPointerImpl(LegacySimulatorData·*legacySimulatorData,·ModularSimulatorAlgorithmBuilderHelper·*builderHelper,·StatePropagatorData·*statePropagatorData,·EnergyData·*energyData,·FreeEnergyPerturbationData·*freeEnergyPerturbationData,·GlobalCommunicationHelper·*globalCommunicationHelper,·ObservablesReducer·*observablesReducer,·const·PropagatorTag·&amp;propagatorTag,·TimeStep·timestep)'],
264 ········['../classgmx_1_1ParrinelloRahmanBarostat.xhtml#a877e6ed528bab8b29fb9e550f4ff5dde',·1,·'gmx::ParrinelloRahmanBarostat::getElementPointerImpl()'],264 ········['../classgmx_1_1ParrinelloRahmanBarostat.xhtml#a877e6ed528bab8b29fb9e550f4ff5dde',·1,·'gmx::ParrinelloRahmanBarostat::getElementPointerImpl()'],
265 ········['../classgmx_1_1NoseHooverChainsElement.xhtml#a7ddc9d053db113bc2ec3bbcef43f1e61',·1,·'gmx::NoseHooverChainsElement::getElementPointerImpl(LegacySimulatorData·*legacySimulatorData,·ModularSimulatorAlgorithmBuilderHelper·*builderHelper,·StatePropagatorData·*statePropagatorData,·EnergyData·*energyData,·FreeEnergyPerturbationData·*freeEnergyPerturbationData,·GlobalCommunicationHelper·*globalCommunicationHelper,·ObservablesReducer·*observablesReducer,·NhcUsage·nhcUsage,·Offset·offset,·UseFullStepKE·useFullStepKE,·ScheduleOnInitStep·scheduleOnInitStep,·const·PropagatorTag·&amp;propagatorTag)'],265 ········['../classgmx_1_1NoseHooverChainsElement.xhtml#a7ddc9d053db113bc2ec3bbcef43f1e61',·1,·'gmx::NoseHooverChainsElement::getElementPointerImpl(LegacySimulatorData·*legacySimulatorData,·ModularSimulatorAlgorithmBuilderHelper·*builderHelper,·StatePropagatorData·*statePropagatorData,·EnergyData·*energyData,·FreeEnergyPerturbationData·*freeEnergyPerturbationData,·GlobalCommunicationHelper·*globalCommunicationHelper,·ObservablesReducer·*observablesReducer,·NhcUsage·nhcUsage,·Offset·offset,·UseFullStepKE·useFullStepKE,·ScheduleOnInitStep·scheduleOnInitStep,·const·PropagatorTag·&amp;propagatorTag)'],
266 ········['../classgmx_1_1NoseHooverChainsElement.xhtml#a29a7c74c948b7c602b1dd3313ab69dad',·1,·'gmx::NoseHooverChainsElement::getElementPointerImpl(LegacySimulatorData·*legacySimulatorData,·ModularSimulatorAlgorithmBuilderHelper·*builderHelper,·StatePropagatorData·*statePropagatorData,·EnergyData·*energyData,·FreeEnergyPerturbationData·*freeEnergyPerturbationData,·GlobalCommunicationHelper·*globalCommunicationHelper,·ObservablesReducer·*observablesReducer,·NhcUsage·nhcUsage,·Offset·offset,·UseFullStepKE·useFullStepKE,·ScheduleOnInitStep·scheduleOnInitStep,·const·MttkPropagatorConnectionDetails·&amp;mttkPropagatorConnectionDetails)'],266 ········['../classgmx_1_1NoseHooverChainsElement.xhtml#a29a7c74c948b7c602b1dd3313ab69dad',·1,·'gmx::NoseHooverChainsElement::getElementPointerImpl(LegacySimulatorData·*legacySimulatorData,·ModularSimulatorAlgorithmBuilderHelper·*builderHelper,·StatePropagatorData·*statePropagatorData,·EnergyData·*energyData,·FreeEnergyPerturbationData·*freeEnergyPerturbationData,·GlobalCommunicationHelper·*globalCommunicationHelper,·ObservablesReducer·*observablesReducer,·NhcUsage·nhcUsage,·Offset·offset,·UseFullStepKE·useFullStepKE,·ScheduleOnInitStep·scheduleOnInitStep,·const·MttkPropagatorConnectionDetails·&amp;mttkPropagatorConnectionDetails)'],
267 ········['../classgmx_1_1MttkBoxScaling.xhtml#abe8bf6c28d7dabd6f5603e21b2612bb6',·1,·'gmx::MttkBoxScaling::getElementPointerImpl()'],267 ········['../classgmx_1_1MttkBoxScaling.xhtml#abe8bf6c28d7dabd6f5603e21b2612bb6',·1,·'gmx::MttkBoxScaling::getElementPointerImpl()'],
268 ········['../classgmx_1_1ConstraintsElement.xhtml#ae06c310ad838f8349b871c005f9d3b3c',·1,·'gmx::ConstraintsElement::getElementPointerImpl()'],268 ········['../classgmx_1_1MttkElement.xhtml#a794ef7d86700bef9f2975129ede52724',·1,·'gmx::MttkElement::getElementPointerImpl()'],
269 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#ac2b06beaf9f2c844a327ef8638b927dd',·1,·'gmx::FreeEnergyPerturbationData::Element::getElementPointerImpl()'],269 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#ac2b06beaf9f2c844a327ef8638b927dd',·1,·'gmx::FreeEnergyPerturbationData::Element::getElementPointerImpl()'],
270 ········['../classgmx_1_1ForceElement.xhtml#ad61039db46548d5aba4a98f5a80ad641',·1,·'gmx::ForceElement::getElementPointerImpl()'],270 ········['../classgmx_1_1ForceElement.xhtml#ad61039db46548d5aba4a98f5a80ad641',·1,·'gmx::ForceElement::getElementPointerImpl()'],
271 ········['../classgmx_1_1FirstOrderPressureCoupling.xhtml#a12f56f099b4540794a586b9991a05773',·1,·'gmx::FirstOrderPressureCoupling::getElementPointerImpl()'],271 ········['../classgmx_1_1FirstOrderPressureCoupling.xhtml#a12f56f099b4540794a586b9991a05773',·1,·'gmx::FirstOrderPressureCoupling::getElementPointerImpl()'],
272 ········['../classgmx_1_1EnergyData_1_1Element.xhtml#a0dc36731c217150cdc10e68565823b85',·1,·'gmx::EnergyData::Element::getElementPointerImpl()'],272 ········['../classgmx_1_1EnergyData_1_1Element.xhtml#a0dc36731c217150cdc10e68565823b85',·1,·'gmx::EnergyData::Element::getElementPointerImpl()'],
273 ········['../classgmx_1_1VelocityScalingTemperatureCoupling.xhtml#a6d3fae3a84087b82d9b82d8afbaccc76',·1,·'gmx::VelocityScalingTemperatureCoupling::getElementPointerImpl()']273 ········['../classgmx_1_1VelocityScalingTemperatureCoupling.xhtml#a6d3fae3a84087b82d9b82d8afbaccc76',·1,·'gmx::VelocityScalingTemperatureCoupling::getElementPointerImpl()']
274 ····]],274 ····]],
275 ····['getenergynames_152',·['getEnergyNames',·['../classgmx_1_1test_1_1EnergyComparison.xhtml#a8be89d78763deacd0c8fc3e8ab157286',·1,·'gmx::test::EnergyComparison']]],275 ····['getenergynames_152',·['getEnergyNames',·['../classgmx_1_1test_1_1EnergyComparison.xhtml#a8be89d78763deacd0c8fc3e8ab157286',·1,·'gmx::test::EnergyComparison']]],
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1415 ····['gnth_5fpme_996',·['gnth_pme',·['../structomp__module__nthreads__t.xhtml#a84a7847560c9b6b7d7ce57935e587f1e',·1,·'omp_module_nthreads_t']]],1415 ····['gnth_5fpme_996',·['gnth_pme',·['../structomp__module__nthreads__t.xhtml#a84a7847560c9b6b7d7ce57935e587f1e',·1,·'omp_module_nthreads_t']]],
1416 ····['go_997',·['Go',·['../namespacegmx.xhtml#aa72f45c17038ea5aae00ba6b17cab901a5f075ae3e1f9d0382bb8c4632991f96f',·1,·'gmx']]],1416 ····['go_997',·['Go',·['../namespacegmx.xhtml#aa72f45c17038ea5aae00ba6b17cab901a5f075ae3e1f9d0382bb8c4632991f96f',·1,·'gmx']]],
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1418 ····['gpp_5fatomtype_2eh_999',·['gpp_atomtype.h',·['../gpp__atomtype_8h.xhtml',·1,·'']]],1418 ····['gpp_5fatomtype_2eh_999',·['gpp_atomtype.h',·['../gpp__atomtype_8h.xhtml',·1,·'']]],
1419 ····['gpp_5fbond_5fatomtype_2ecpp_1000',·['gpp_bond_atomtype.cpp',·['../tests_2gpp__bond__atomtype_8cpp.xhtml',·1,·'']]],1419 ····['gpp_5fbond_5fatomtype_2ecpp_1000',·['gpp_bond_atomtype.cpp',·['../tests_2gpp__bond__atomtype_8cpp.xhtml',·1,·'']]],
1420 ····['gpp_5fbond_5fatomtype_2eh_1001',·['gpp_bond_atomtype.h',·['../gpp__bond__atomtype_8h.xhtml',·1,·'']]],1420 ····['gpp_5fbond_5fatomtype_2eh_1001',·['gpp_bond_atomtype.h',·['../gpp__bond__atomtype_8h.xhtml',·1,·'']]],
1421 ····['gpu_1002',·['gpu',·['../pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791a52f9ec21735243ad9917cda3ca077d32',·1,·'GPU:&#160;pme.h'],1421 ····['gpu_1002',·['gpu',·['../clusterdistancekerneltype_8h.xhtml#a6d74049ae6c72289649a7de671a92068a3432ca64f06615abf07ab44c10cada38',·1,·'Gpu:&#160;clusterdistancekerneltype.h'],
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1426 ········['../classgmx_1_1Gpu3dFft.xhtml',·1,·'gmx::Gpu3dFft']1426 ········['../classgmx_1_1Gpu3dFft.xhtml',·1,·'gmx::Gpu3dFft']
1427 ····]],1427 ····]],
1428 ····['gpu_5f3dfft_2ecpp_1004',·['gpu_3dfft.cpp',·['../gpu__3dfft_8cpp.xhtml',·1,·'']]],1428 ····['gpu_5f3dfft_2ecpp_1004',·['gpu_3dfft.cpp',·['../gpu__3dfft_8cpp.xhtml',·1,·'']]],
1429 ····['gpu_5f3dfft_2eh_1005',·['gpu_3dfft.h',·['../gpu__3dfft_8h.xhtml',·1,·'']]],1429 ····['gpu_5f3dfft_2eh_1005',·['gpu_3dfft.h',·['../gpu__3dfft_8h.xhtml',·1,·'']]],
1430 ····['gpu_5f3dfft_5fcufft_2eh_1006',·['gpu_3dfft_cufft.h',·['../gpu__3dfft__cufft_8h.xhtml',·1,·'']]],1430 ····['gpu_5f3dfft_5fcufft_2eh_1006',·['gpu_3dfft_cufft.h',·['../gpu__3dfft__cufft_8h.xhtml',·1,·'']]],
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1449 ····['gpu_5f3dfft_5fsycl_5fvkfft_2ecpp_1025',·['gpu_3dfft_sycl_vkfft.cpp',·['../gpu__3dfft__sycl__vkfft_8cpp.xhtml',·1,·'']]],1449 ····['gpu_5f3dfft_5fsycl_5fvkfft_2ecpp_1025',·['gpu_3dfft_sycl_vkfft.cpp',·['../gpu__3dfft__sycl__vkfft_8cpp.xhtml',·1,·'']]],
1450 ····['gpu_5f3dfft_5fsycl_5fvkfft_2eh_1026',·['gpu_3dfft_sycl_vkfft.h',·['../gpu__3dfft__sycl__vkfft_8h.xhtml',·1,·'']]],1450 ····['gpu_5f3dfft_5fsycl_5fvkfft_2eh_1026',·['gpu_3dfft_sycl_vkfft.h',·['../gpu__3dfft__sycl__vkfft_8h.xhtml',·1,·'']]],
1451 ····['gpu_5faccumulate_5ftimings_1027',·['gpu_accumulate_timings',·['../namespaceNbnxm.xhtml#a2d3096195938f2b449db6229daaec598',·1,·'Nbnxm']]],1451 ····['gpu_5faccumulate_5ftimings_1027',·['gpu_accumulate_timings',·['../namespaceNbnxm.xhtml#a2d3096195938f2b449db6229daaec598',·1,·'Nbnxm']]],
1452 ····['gpu_5fclear_5foutputs_1028',·['gpu_clear_outputs',·['../namespaceNbnxm.xhtml#a0265ef6de04acc0eb2541af1553ed62c',·1,·'Nbnxm']]],1452 ····['gpu_5fclear_5foutputs_1028',·['gpu_clear_outputs',·['../namespaceNbnxm.xhtml#a0265ef6de04acc0eb2541af1553ed62c',·1,·'Nbnxm']]],
1453 ····['gpu_5fcommon_2eh_1029',·['gpu_common.h',·['../gpu__common_8h.xhtml',·1,·'']]],1453 ····['gpu_5fcommon_2eh_1029',·['gpu_common.h',·['../gpu__common_8h.xhtml',·1,·'']]],
1454 ····['gpu_5fcommon_5futils_2eh_1030',·['gpu_common_utils.h',·['../gpu__common__utils_8h.xhtml',·1,·'']]],1454 ····['gpu_5fcommon_5futils_2eh_1030',·['gpu_common_utils.h',·['../gpu__common__utils_8h.xhtml',·1,·'']]],
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1455 ····['gpu_5fcopy_5fxq_5fto_5fgpu_1031',·['gpu_copy_xq_to_gpu',·['../namespaceNbnxm.xhtml#a47baf14d693cf498e962c60359837101',·1,·'Nbnxm::gpu_copy_xq_to_gpu(NbnxmGpu·gmx_unused·*nb,·const·struct·nbnxn_atomdata_t·gmx_unused·*nbdata,·gmx::AtomLocality·gmx_unused·a[·...·truncated·by·diffoscope;·len:·7,·SHA:·3a3e3a24ba7923cdc527f64f2aeee3505d0d406962b976e94f4b7b3f0ac573bd·...·]1456 ········['../namespaceNbnxm.xhtml#a47baf14d693cf498e962c60359837101',·1,·'Nbnxm::gpu_copy_xq_to_gpu(NbnxmGpu·gmx_unused·*nb,·const·struct·nbnxn_atomdata_t·gmx_unused·*nbdata,·gmx::AtomLocality·gmx_unused·aloc)']
1456 ········['../namespaceNbnxm.xhtml#a6ab6c8201335eac27131707a6207cd23',·1,·'Nbnxm::gpu_copy_xq_to_gpu(NbnxmGpu·*nb,·const·nbnxn_atomdata_t·*nbatom,·const·AtomLocality·atomLocality)'] 
1457 ····]],1457 ····]],
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1459 ····['gpu_5ffree_1033',·['gpu_free',·['../namespaceNbnxm.xhtml#a4f5fa9f54b0226a99024cfc1b5f8317a',·1,·'Nbnxm::gpu_free(NbnxmGpu·*nb)'],1459 ····['gpu_5ffree_1033',·['gpu_free',·['../namespaceNbnxm.xhtml#a4f5fa9f54b0226a99024cfc1b5f8317a',·1,·'Nbnxm::gpu_free(NbnxmGpu·*nb)'],
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1463 ····['gpu_5fget_5ff_1035',·['gpu_get_f',·['../namespaceNbnxm.xhtml#abac2dba93430f43bac48391a09aa6f10',·1,·'Nbnxm']]],1463 ····['gpu_5fget_5ff_1035',·['gpu_get_f',·['../namespaceNbnxm.xhtml#abac2dba93430f43bac48391a09aa6f10',·1,·'Nbnxm']]],
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1464 ····['gpu_5fget_5ftimings_1036',·['gpu_get_timings',·['../namespaceNbnxm.xhtml#a0f182b8548c3ea11ff54a60442c42bcf',·1,·'Nbnxm::gpu_get_timings(NbnxmGpu·gmx_unused·*nb)'],1465 ········['../namespaceNbnxm.xhtml#a0f182b8548c3ea11ff54a60442c42bcf',·1,·'Nbnxm::gpu_get_timings(NbnxmGpu·gmx_unused·*nb)']
1465 ········['../namespaceNbnxm.xhtml#a08cbf02653f605dfe6a0f04027cfbb85',·1,·'Nbnxm::gpu_get_timings(NbnxmGpu·*nb)'] 
1466 ····]],1466 ····]],
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228 ········['../helpformat_8cpp.xhtml',·1,·'(Global·Namespace)']228 ········['../tests_2helpformat_8cpp.xhtml',·1,·'(Global·Namespace)']
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238 ········['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']238 ········['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
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253 ····['helptitle_5fdistance_183',·['helptitle_distance',·['../sm__distance_8cpp.xhtml#ae4dcf55ca7cd7f92b81e9a57f8efb0c1',·1,·'sm_distance.cpp']]],253 ····['helptitle_5fdistance_183',·['helptitle_distance',·['../sm__distance_8cpp.xhtml#ae4dcf55ca7cd7f92b81e9a57f8efb0c1',·1,·'sm_distance.cpp']]],
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257 ····['helptopic_2eh_187',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],257 ····['helptopic_2eh_187',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],
258 ····['helptopicpointer_188',·['HelpTopicPointer',·['../namespacegmx.xhtml#abb455c7711ece592606e70a093ff80b4',·1,·'gmx']]],258 ····['helptopicpointer_188',·['HelpTopicPointer',·['../namespacegmx.xhtml#abb455c7711ece592606e70a093ff80b4',·1,·'gmx']]],
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259 ····['helpwritercontext_189',·['helpwritercontext',·['../classgmx_1_1HelpWriterContext.xhtml#a9cc36f78e38c772e52c4cdc73cf18d7c',·1,·'gmx::HelpWriterContext::HelpWriterContext(TextWriter·*writer,·HelpOutputFormat·format,·const·HelpLinks·*links)'],261 ········['../classgmx_1_1HelpWriterContext.xhtml#a9cc36f78e38c772e52c4cdc73cf18d7c',·1,·'gmx::HelpWriterContext::HelpWriterContext(TextWriter·*writer,·HelpOutputFormat·format,·const·HelpLinks·*links)'],
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261 ········['../classgmx_1_1HelpLinks.xhtml#a734bf51c01e151da043a218f686b5114',·1,·'gmx::HelpLinks::HelpWriterContext'],263 ········['../classgmx_1_1HelpLinks.xhtml#a734bf51c01e151da043a218f686b5114',·1,·'gmx::HelpLinks::HelpWriterContext']
262 ········['../classgmx_1_1HelpWriterContext.xhtml#ae1e18511b3fea03259da87cceb160ef0',·1,·'gmx::HelpWriterContext::HelpWriterContext()'], 
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269 ····['helpwriting_2ecpp_192',·['helpwriting.cpp',·['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],269 ····['helpwriting_2ecpp_192',·['helpwriting.cpp',·['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],
270 ········['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']270 ········['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']
271 ····]],271 ····]],
272 ····['hidden_193',·['hidden',·['../classgmx_1_1OptionTemplate.xhtml#a8a3e6c99bb3d8cae0318f6f3d96376b7',·1,·'gmx::OptionTemplate']]],272 ····['hidden_193',·['hidden',·['../classgmx_1_1OptionTemplate.xhtml#a8a3e6c99bb3d8cae0318f6f3d96376b7',·1,·'gmx::OptionTemplate']]],
273 ····['hide_5ffrom_5fopencl_5fcompiler_194',·['HIDE_FROM_OPENCL_COMPILER',·['../pme__gpu__types_8h.xhtml#a683fdff44eefc1064e0e0e2ecba75fbe',·1,·'pme_gpu_types.h']]],273 ····['hide_5ffrom_5fopencl_5fcompiler_194',·['HIDE_FROM_OPENCL_COMPILER',·['../pme__gpu__types_8h.xhtml#a683fdff44eefc1064e0e0e2ecba75fbe',·1,·'pme_gpu_types.h']]],
274 ····['high_195',·['High',·['../device__stream_8h.xhtml#a745c3a25d092600ae45b68d7e73d8319a655d20c1ca69519ca647684edbb2db35',·1,·'device_stream.h']]],274 ····['high_195',·['High',·['../device__stream_8h.xhtml#a745c3a25d092600ae45b68d7e73d8319a655d20c1ca69519ca647684edbb2db35',·1,·'device_stream.h']]],
275 ····['high_20level_20framework_196',·['high·level·framework',·['../page_trajectoryanalysisframework.xhtml#autotoc_md98',·1,·'High-level·framework'],275 ····['high_20level_20framework_196',·['high·level·framework',·['../page_trajectoryanalysisframework.xhtml#autotoc_md98',·1,·'High-level·framework'],
276 ········['../page_energyanalysisframework.xhtml#autotoc_md89',·1,·'High-level·framework']276 ········['../page_energyanalysisframework.xhtml#autotoc_md89',·1,·'High-level·framework']
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283 ····['histogram_2ecpp_202',·['histogram.cpp',·['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'],283 ····['histogram_2ecpp_202',·['histogram.cpp',·['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'],
284 ········['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)']284 ········['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)']
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287 ····['histogramfrombins_204',·['histogramFromBins',·['../group__group__publicapi.xhtml#ga73a2213cd82e2f915b9f9d65a4b85212',·1,·'gmx']]],287 ····['histogramfrombins_204',·['histogramFromBins',·['../group__group__publicapi.xhtml#ga73a2213cd82e2f915b9f9d65a4b85212',·1,·'gmx']]],
288 ····['histogramfromrange_205',·['histogramFromRange',·['../group__group__publicapi.xhtml#gaaf9a9e69ad91172d5f4fba7148280762',·1,·'gmx']]],288 ····['histogramfromrange_205',·['histogramFromRange',·['../group__group__publicapi.xhtml#gaaf9a9e69ad91172d5f4fba7148280762',·1,·'gmx']]],
289 ····['histogramisequilibrated_206',·['histogramIsEquilibrated',·['../namespacegmx_1_1anonymous__namespace_02histogramsize_8cpp_03.xhtml#aa21d0e550b2eada448c1e14b657f1ca1',·1,·'gmx::anonymous_namespace{histogramsize.cpp}']]],289 ····['histogramisequilibrated_206',·['histogramIsEquilibrated',·['../namespacegmx_1_1anonymous__namespace_02histogramsize_8cpp_03.xhtml#aa21d0e550b2eada448c1e14b657f1ca1',·1,·'gmx::anonymous_namespace{histogramsize.cpp}']]],
290 ····['histogramsize_207',·['histogramsize',·['../classgmx_1_1HistogramSize.xhtml',·1,·'gmx::HistogramSize'], 
291 ········['../classgmx_1_1HistogramSize.xhtml#a114eca6ee210c4f957fb5f1850b4ae3f',·1,·'gmx::HistogramSize::histogramSize()'],290 ····['histogramsize_207',·['histogramsize',·['../classgmx_1_1HistogramSize.xhtml#a114eca6ee210c4f957fb5f1850b4ae3f',·1,·'gmx::HistogramSize::histogramSize()'],
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292 ········['../classgmx_1_1BiasState.xhtml#aa9f45bf3772811b41c2263d8d7985c72',·1,·'gmx::BiasState::histogramSize()'],292 ········['../classgmx_1_1BiasState.xhtml#aa9f45bf3772811b41c2263d8d7985c72',·1,·'gmx::BiasState::histogramSize()'],
293 ········['../classgmx_1_1HistogramSize.xhtml#ac1c0ea80231544919c124024db5b2203',·1,·'gmx::HistogramSize::HistogramSize()']293 ········['../classgmx_1_1HistogramSize.xhtml#ac1c0ea80231544919c124024db5b2203',·1,·'gmx::HistogramSize::HistogramSize()']
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296 ····['histogramsize_2eh_209',·['histogramsize.h',·['../histogramsize_8h.xhtml',·1,·'']]],296 ····['histogramsize_2eh_209',·['histogramsize.h',·['../histogramsize_8h.xhtml',·1,·'']]],
297 ····['history_5ft_210',·['history_t',·['../classhistory__t.xhtml',·1,·'']]],297 ····['history_5ft_210',·['history_t',·['../classhistory__t.xhtml',·1,·'']]],
298 ····['hostallocationpolicy_211',·['hostallocationpolicy',·['../classgmx_1_1HostAllocationPolicy.xhtml',·1,·'gmx::HostAllocationPolicy'], 
299 ········['../classgmx_1_1HostAllocationPolicy.xhtml#af23d109bec3b07833dd6a050f70cd923',·1,·'gmx::HostAllocationPolicy::HostAllocationPolicy()']298 ····['hostallocationpolicy_211',·['hostallocationpolicy',·['../classgmx_1_1HostAllocationPolicy.xhtml#af23d109bec3b07833dd6a050f70cd923',·1,·'gmx::HostAllocationPolicy::HostAllocationPolicy()'],
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302 ····['hostallocator_2ecpp_213',·['hostallocator.cpp',·['../tests_2hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],302 ····['hostallocator_2ecpp_213',·['hostallocator.cpp',·['../tests_2hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],
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306 ····['hostallocatortest_215',·['HostAllocatorTest',·['../structgmx_1_1test_1_1HostAllocatorTest.xhtml',·1,·'gmx::test']]],306 ····['hostallocatortest_215',·['HostAllocatorTest',·['../structgmx_1_1test_1_1HostAllocatorTest.xhtml',·1,·'gmx::test']]],
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321 ····['localatomset_218',·['localatomset',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#a188c5386f2eb694db6cedf88359fa41d',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup::localAtomSet()'],321 ····['localatomset_218',·['localatomset',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#a188c5386f2eb694db6cedf88359fa41d',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup::localAtomSet()'],
322 ········['../classgmx_1_1LocalAtomSet.xhtml',·1,·'gmx::LocalAtomSet']322 ········['../classgmx_1_1LocalAtomSet.xhtml',·1,·'gmx::LocalAtomSet']
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326 ····['localatomsetdata_2ecpp_221',·['localatomsetdata.cpp',·['../localatomsetdata_8cpp.xhtml',·1,·'']]],326 ····['localatomsetdata_2ecpp_221',·['localatomsetdata.cpp',·['../localatomsetdata_8cpp.xhtml',·1,·'']]],
327 ····['localatomsetdata_2eh_222',·['localatomsetdata.h',·['../localatomsetdata_8h.xhtml',·1,·'']]],327 ····['localatomsetdata_2eh_222',·['localatomsetdata.h',·['../localatomsetdata_8h.xhtml',·1,·'']]],
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328 ····['localatomsetmanager_223',·['localatomsetmanager',·['../classgmx_1_1ColvarsSimulationsParameters.xhtml#a34afd04735705f6200b8ae831dd1d458',·1,·'gmx::ColvarsSimulationsParameters::localAtomSetManager()'],329 ········['../classgmx_1_1ColvarsSimulationsParameters.xhtml#a34afd04735705f6200b8ae831dd1d458',·1,·'gmx::ColvarsSimulationsParameters::localAtomSetManager()']
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335 ····['localcomplexgridsize_226',·['localComplexGridSize',·['../structPmeGpuGridParams.xhtml#aa89412c89b24d489e7b1e2a7429372ee',·1,·'PmeGpuGridParams']]],335 ····['localcomplexgridsize_226',·['localComplexGridSize',·['../structPmeGpuGridParams.xhtml#aa89412c89b24d489e7b1e2a7429372ee',·1,·'PmeGpuGridParams']]],
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345 ····['localsettledata_236',·['LocalSettleData',·['../structLocalSettleData.xhtml',·1,·'']]],345 ····['localsettledata_236',·['LocalSettleData',·['../structLocalSettleData.xhtml',·1,·'']]],
346 ····['localstate_5f_237',·['localState_',·['../classgmx_1_1LocalTopologyChecker_1_1Impl.xhtml#a60706914c73dae1f3b60d4044c9bd89e',·1,·'gmx::LocalTopologyChecker::Impl']]],346 ····['localstate_5f_237',·['localState_',·['../classgmx_1_1LocalTopologyChecker_1_1Impl.xhtml#a60706914c73dae1f3b60d4044c9bd89e',·1,·'gmx::LocalTopologyChecker::Impl']]],
347 ····['localstate_5fp_238',·['localState_p',·['../structgmx_1_1SimulatorStateData.xhtml#aee41bc2c165a0237828aeba86ee4bce7',·1,·'gmx::SimulatorStateData']]],347 ····['localstate_5fp_238',·['localState_p',·['../structgmx_1_1SimulatorStateData.xhtml#aee41bc2c165a0237828aeba86ee4bce7',·1,·'gmx::SimulatorStateData']]],
348 ····['localtopology_2ecpp_239',·['localtopology.cpp',·['../localtopology_8cpp.xhtml',·1,·'']]],348 ····['localtopology_2ecpp_239',·['localtopology.cpp',·['../localtopology_8cpp.xhtml',·1,·'']]],
349 ····['localtopology_2eh_240',·['localtopology.h',·['../localtopology_8h.xhtml',·1,·'']]],349 ····['localtopology_2eh_240',·['localtopology.h',·['../localtopology_8h.xhtml',·1,·'']]],
350 ····['localtopology_5f_241',·['localtopology_',·['../classgmx_1_1TopologyData.xhtml#a7fa72da6fd216820f6041bfd63464486',·1,·'gmx::TopologyData::localTopology_'], 
351 ········['../classgmx_1_1LocalTopologyChecker_1_1Impl.xhtml#a427e585878423e446d362865f25bca32',·1,·'gmx::LocalTopologyChecker::Impl::localTopology_']350 ····['localtopology_5f_241',·['localtopology_',·['../classgmx_1_1LocalTopologyChecker_1_1Impl.xhtml#a427e585878423e446d362865f25bca32',·1,·'gmx::LocalTopologyChecker::Impl::localTopology_'],
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354 ········['../classgmx_1_1LocalTopologyChecker.xhtml',·1,·'gmx::LocalTopologyChecker'],355 ········['../classgmx_1_1LocalTopologyChecker.xhtml',·1,·'gmx::LocalTopologyChecker']
355 ········['../classgmx_1_1LocalTopologyChecker.xhtml#afbf4b761e93e75613df28774bae828b8',·1,·'gmx::LocalTopologyChecker::LocalTopologyChecker()'] 
356 ····]],356 ····]],
357 ····['localtopologychecker_2ecpp_243',·['localtopologychecker.cpp',·['../localtopologychecker_8cpp.xhtml',·1,·'']]],357 ····['localtopologychecker_2ecpp_243',·['localtopologychecker.cpp',·['../localtopologychecker_8cpp.xhtml',·1,·'']]],
358 ····['localtopologychecker_2eh_244',·['localtopologychecker.h',·['../localtopologychecker_8h.xhtml',·1,·'']]],358 ····['localtopologychecker_2eh_244',·['localtopologychecker.h',·['../localtopologychecker_8h.xhtml',·1,·'']]],
359 ····['localweights_245',·['localWeights',·['../structpull__group__work__t.xhtml#a493a60c48a16568c697d89236dbb062c',·1,·'pull_group_work_t']]],359 ····['localweights_245',·['localWeights',·['../structpull__group__work__t.xhtml#a493a60c48a16568c697d89236dbb062c',·1,·'pull_group_work_t']]],
360 ····['localweightscaling_246',·['localWeightScaling',·['../classgmx_1_1BiasParams.xhtml#afada61a4e15bafed5aa2a02978e8b55b',·1,·'gmx::BiasParams']]],360 ····['localweightscaling_246',·['localWeightScaling',·['../classgmx_1_1BiasParams.xhtml#afada61a4e15bafed5aa2a02978e8b55b',·1,·'gmx::BiasParams']]],
361 ····['localweightsum_247',·['localWeightSum',·['../classgmx_1_1PointState.xhtml#a42c85c7025b9f88ccfb845042f681817',·1,·'gmx::PointState']]],361 ····['localweightsum_247',·['localWeightSum',·['../classgmx_1_1PointState.xhtml#a42c85c7025b9f88ccfb845042f681817',·1,·'gmx::PointState']]],
362 ····['location_248',·['location',·['../classgmx_1_1SelectionParserValue.xhtml#af55fc99681393cc6c242dff24b87785a',·1,·'gmx::SelectionParserValue::location()'],362 ····['location_248',·['location',·['../classgmx_1_1SelectionParserValue.xhtml#af55fc99681393cc6c242dff24b87785a',·1,·'gmx::SelectionParserValue::location()'],
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5 ····['abstractoption_2eh_3',·['abstractoption.h',·['../abstractoption_8h.xhtml',·1,·'']]],5 ····['abstractoption_2eh_3',·['abstractoption.h',·['../abstractoption_8h.xhtml',·1,·'']]],
6 ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]],6 ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]],
7 ····['abstractoptionstorage_2eh_5',·['abstractoptionstorage.h',·['../abstractoptionstorage_8h.xhtml',·1,·'']]],7 ····['abstractoptionstorage_2eh_5',·['abstractoptionstorage.h',·['../abstractoptionstorage_8h.xhtml',·1,·'']]],
8 ····['abstractsection_2ecpp_6',·['abstractsection.cpp',·['../abstractsection_8cpp.xhtml',·1,·'']]],8 ····['abstractsection_2ecpp_6',·['abstractsection.cpp',·['../abstractsection_8cpp.xhtml',·1,·'']]],
9 ····['abstractsection_2eh_7',·['abstractsection.h',·['../abstractsection_8h.xhtml',·1,·'']]],9 ····['abstractsection_2eh_7',·['abstractsection.h',·['../abstractsection_8h.xhtml',·1,·'']]],
10 ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]],10 ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]],
11 ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]],11 ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]],
12 ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],12 ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],
13 ········['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']13 ········['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']
14 ····]],14 ····]],
15 ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],15 ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],
16 ····['alignedallocator_5fimpl_2eh_12',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]],16 ····['alignedallocator_5fimpl_2eh_12',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]],
17 ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]],17 ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]],
18 ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],18 ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],
19 ········['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']19 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']
20 ····]],20 ····]],
21 ····['analysisdata_2eh_15',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]],21 ····['analysisdata_2eh_15',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]],
22 ····['analysismodule_2ecpp_16',·['analysismodule.cpp',·['../analysismodule_8cpp.xhtml',·1,·'']]],22 ····['analysismodule_2ecpp_16',·['analysismodule.cpp',·['../analysismodule_8cpp.xhtml',·1,·'']]],
23 ····['analysismodule_2eh_17',·['analysismodule.h',·['../api_2legacy_2include_2gromacs_2trajectoryanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)'],23 ····['analysismodule_2eh_17',·['analysismodule.h',·['../api_2legacy_2include_2gromacs_2trajectoryanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)'],
24 ········['../src_2gromacs_2energyanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)']24 ········['../src_2gromacs_2energyanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['analysissettings_2ecpp_18',·['analysissettings.cpp',·['../analysissettings_8cpp.xhtml',·1,·'']]],26 ····['analysissettings_2ecpp_18',·['analysissettings.cpp',·['../analysissettings_8cpp.xhtml',·1,·'']]],
27 ····['analysissettings_2eh_19',·['analysissettings.h',·['../analysissettings_8h.xhtml',·1,·'']]],27 ····['analysissettings_2eh_19',·['analysissettings.h',·['../analysissettings_8h.xhtml',·1,·'']]],
28 ····['analysissettings_5fimpl_2eh_20',·['analysissettings_impl.h',·['../analysissettings__impl_8h.xhtml',·1,·'']]],28 ····['analysissettings_5fimpl_2eh_20',·['analysissettings_impl.h',·['../analysissettings__impl_8h.xhtml',·1,·'']]],
29 ····['andersentemperaturecoupling_2ecpp_21',·['andersentemperaturecoupling.cpp',·['../andersentemperaturecoupling_8cpp.xhtml',·1,·'']]],29 ····['andersentemperaturecoupling_2ecpp_21',·['andersentemperaturecoupling.cpp',·['../andersentemperaturecoupling_8cpp.xhtml',·1,·'']]],
30 ····['andersentemperaturecoupling_2eh_22',·['andersentemperaturecoupling.h',·['../andersentemperaturecoupling_8h.xhtml',·1,·'']]],30 ····['andersentemperaturecoupling_2eh_22',·['andersentemperaturecoupling.h',·['../andersentemperaturecoupling_8h.xhtml',·1,·'']]],
31 ····['angle_2ecpp_23',·['angle.cpp',·['../modules_2angle_8cpp.xhtml',·1,·'(Global·Namespace)'],31 ····['angle_2ecpp_23',·['angle.cpp',·['../tests_2angle_8cpp.xhtml',·1,·'(Global·Namespace)'],
32 ········['../tests_2angle_8cpp.xhtml',·1,·'(Global·Namespace)']32 ········['../modules_2angle_8cpp.xhtml',·1,·'(Global·Namespace)']
33 ····]],33 ····]],
34 ····['angle_2eh_24',·['angle.h',·['../angle_8h.xhtml',·1,·'']]],34 ····['angle_2eh_24',·['angle.h',·['../angle_8h.xhtml',·1,·'']]],
35 ····['any_2ecpp_25',·['any.cpp',·['../any_8cpp.xhtml',·1,·'']]],35 ····['any_2ecpp_25',·['any.cpp',·['../any_8cpp.xhtml',·1,·'']]],
36 ····['any_2eh_26',·['any.h',·['../any_8h.xhtml',·1,·'']]],36 ····['any_2eh_26',·['any.h',·['../any_8h.xhtml',·1,·'']]],
37 ····['architecture_2eh_27',·['architecture.h',·['../architecture_8h.xhtml',·1,·'']]],37 ····['architecture_2eh_27',·['architecture.h',·['../architecture_8h.xhtml',·1,·'']]],
38 ····['arraydata_2ecpp_28',·['arraydata.cpp',·['../tests_2arraydata_8cpp.xhtml',·1,·'(Global·Namespace)'],38 ····['arraydata_2ecpp_28',·['arraydata.cpp',·['../tests_2arraydata_8cpp.xhtml',·1,·'(Global·Namespace)'],
39 ········['../arraydata_8cpp.xhtml',·1,·'(Global·Namespace)']39 ········['../arraydata_8cpp.xhtml',·1,·'(Global·Namespace)']
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23 ····['biassharing_2ecpp_21',·['biassharing.cpp',·['../biassharing_8cpp.xhtml',·1,·'']]],23 ····['biassharing_2ecpp_21',·['biassharing.cpp',·['../biassharing_8cpp.xhtml',·1,·'']]],
24 ····['biassharing_2eh_22',·['biassharing.h',·['../biassharing_8h.xhtml',·1,·'']]],24 ····['biassharing_2eh_22',·['biassharing.h',·['../biassharing_8h.xhtml',·1,·'']]],
25 ····['biasstate_2ecpp_23',·['biasstate.cpp',·['../biasstate_8cpp.xhtml',·1,·'']]],25 ····['biasstate_2ecpp_23',·['biasstate.cpp',·['../biasstate_8cpp.xhtml',·1,·'']]],
26 ····['biasstate_2eh_24',·['biasstate.h',·['../biasstate_8h.xhtml',·1,·'']]],26 ····['biasstate_2eh_24',·['biasstate.h',·['../biasstate_8h.xhtml',·1,·'']]],
27 ····['biaswriter_2eh_25',·['biaswriter.h',·['../biaswriter_8h.xhtml',·1,·'']]],27 ····['biaswriter_2eh_25',·['biaswriter.h',·['../biaswriter_8h.xhtml',·1,·'']]],
28 ····['binaryinformation_2ecpp_26',·['binaryinformation.cpp',·['../binaryinformation_8cpp.xhtml',·1,·'']]],28 ····['binaryinformation_2ecpp_26',·['binaryinformation.cpp',·['../binaryinformation_8cpp.xhtml',·1,·'']]],
29 ····['binaryinformation_2eh_27',·['binaryinformation.h',·['../binaryinformation_8h.xhtml',·1,·'']]],29 ····['binaryinformation_2eh_27',·['binaryinformation.h',·['../binaryinformation_8h.xhtml',·1,·'']]],
30 ····['bitmask_2eh_28',·['bitmask.h',·['../tests_2bitmask_8h.xhtml',·1,·'(Global·Namespace)'],30 ····['bitmask_2eh_28',·['bitmask.h',·['../include_2gromacs_2utility_2bitmask_8h.xhtml',·1,·'(Global·Namespace)'],
31 ········['../include_2gromacs_2utility_2bitmask_8h.xhtml',·1,·'(Global·Namespace)']31 ········['../tests_2bitmask_8h.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['bonded_2ecpp_29',·['bonded.cpp',·['../tests_2bonded_8cpp.xhtml',·1,·'(Global·Namespace)'],33 ····['bonded_2ecpp_29',·['bonded.cpp',·['../tests_2bonded_8cpp.xhtml',·1,·'(Global·Namespace)'],
34 ········['../bonded_8cpp.xhtml',·1,·'(Global·Namespace)']34 ········['../bonded_8cpp.xhtml',·1,·'(Global·Namespace)']
35 ····]],35 ····]],
36 ····['bonded_2eh_30',·['bonded.h',·['../bonded_8h.xhtml',·1,·'']]],36 ····['bonded_2eh_30',·['bonded.h',·['../bonded_8h.xhtml',·1,·'']]],
37 ····['booltype_2ecpp_31',·['booltype.cpp',·['../booltype_8cpp.xhtml',·1,·'(Global·Namespace)'],37 ····['booltype_2ecpp_31',·['booltype.cpp',·['../tests_2booltype_8cpp.xhtml',·1,·'(Global·Namespace)'],
38 ········['../tests_2booltype_8cpp.xhtml',·1,·'(Global·Namespace)']38 ········['../booltype_8cpp.xhtml',·1,·'(Global·Namespace)']
39 ····]],39 ····]],
40 ····['booltype_2eh_32',·['booltype.h',·['../booltype_8h.xhtml',·1,·'']]],40 ····['booltype_2eh_32',·['booltype.h',·['../booltype_8h.xhtml',·1,·'']]],
41 ····['bootstrap_5floadstore_2ecpp_33',·['bootstrap_loadstore.cpp',·['../bootstrap__loadstore_8cpp.xhtml',·1,·'']]],41 ····['bootstrap_5floadstore_2ecpp_33',·['bootstrap_loadstore.cpp',·['../bootstrap__loadstore_8cpp.xhtml',·1,·'']]],
42 ····['boundingboxes_2eh_34',·['boundingboxes.h',·['../boundingboxes_8h.xhtml',·1,·'']]],42 ····['boundingboxes_2eh_34',·['boundingboxes.h',·['../boundingboxes_8h.xhtml',·1,·'']]],
43 ····['box_2ecpp_35',·['box.cpp',·['../box_8cpp.xhtml',·1,·'']]],43 ····['box_2ecpp_35',·['box.cpp',·['../box_8cpp.xhtml',·1,·'']]],
44 ····['box_2eh_36',·['box.h',·['../box_8h.xhtml',·1,·'']]],44 ····['box_2eh_36',·['box.h',·['../box_8h.xhtml',·1,·'']]],
45 ····['boxdeformation_2ecpp_37',·['boxdeformation.cpp',·['../gromacs_2mdlib_2boxdeformation_8cpp.xhtml',·1,·'(Global·Namespace)'],45 ····['boxdeformation_2ecpp_37',·['boxdeformation.cpp',·['../programs_2mdrun_2tests_2boxdeformation_8cpp.xhtml',·1,·'(Global·Namespace)'],
46 ········['../programs_2mdrun_2tests_2boxdeformation_8cpp.xhtml',·1,·'(Global·Namespace)']46 ········['../gromacs_2mdlib_2boxdeformation_8cpp.xhtml',·1,·'(Global·Namespace)']
47 ····]],47 ····]],
48 ····['boxdeformation_2eh_38',·['boxdeformation.h',·['../boxdeformation_8h.xhtml',·1,·'']]],48 ····['boxdeformation_2eh_38',·['boxdeformation.h',·['../boxdeformation_8h.xhtml',·1,·'']]],
49 ····['boxmatrix_2ecpp_39',·['boxmatrix.cpp',·['../boxmatrix_8cpp.xhtml',·1,·'']]],49 ····['boxmatrix_2ecpp_39',·['boxmatrix.cpp',·['../boxmatrix_8cpp.xhtml',·1,·'']]],
50 ····['boxmatrix_2eh_40',·['boxmatrix.h',·['../boxmatrix_8h.xhtml',·1,·'']]],50 ····['boxmatrix_2eh_40',·['boxmatrix.h',·['../boxmatrix_8h.xhtml',·1,·'']]],
51 ····['boxutilities_2ecpp_41',·['boxutilities.cpp',·['../boxutilities_8cpp.xhtml',·1,·'']]],51 ····['boxutilities_2ecpp_41',·['boxutilities.cpp',·['../boxutilities_8cpp.xhtml',·1,·'']]],
52 ····['broadcaststructs_2eh_42',·['broadcaststructs.h',·['../broadcaststructs_8h.xhtml',·1,·'']]],52 ····['broadcaststructs_2eh_42',·['broadcaststructs.h',·['../broadcaststructs_8h.xhtml',·1,·'']]],
53 ····['builder_2ecpp_43',·['builder.cpp',·['../builder_8cpp.xhtml',·1,·'']]],53 ····['builder_2ecpp_43',·['builder.cpp',·['../builder_8cpp.xhtml',·1,·'']]],
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21 ····['referencetemperaturemanager_2eh_17',·['referencetemperaturemanager.h',·['../referencetemperaturemanager_8h.xhtml',·1,·'']]],21 ····['referencetemperaturemanager_2eh_17',·['referencetemperaturemanager.h',·['../referencetemperaturemanager_8h.xhtml',·1,·'']]],
22 ····['register_2ecpp_18',·['register.cpp',·['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],22 ····['register_2ecpp_18',·['register.cpp',·['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],
23 ········['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)']23 ········['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)']
24 ····]],24 ····]],
25 ····['register_2eh_19',·['register.h',·['../register_8h.xhtml',·1,·'']]],25 ····['register_2eh_19',·['register.h',·['../register_8h.xhtml',·1,·'']]],
26 ····['repeatingsection_2ecpp_20',·['repeatingsection.cpp',·['../repeatingsection_8cpp.xhtml',·1,·'']]],26 ····['repeatingsection_2ecpp_20',·['repeatingsection.cpp',·['../repeatingsection_8cpp.xhtml',·1,·'']]],
27 ····['repeatingsection_2eh_21',·['repeatingsection.h',·['../repeatingsection_8h.xhtml',·1,·'']]],27 ····['repeatingsection_2eh_21',·['repeatingsection.h',·['../repeatingsection_8h.xhtml',·1,·'']]],
28 ····['replicaexchange_2ecpp_22',·['replicaexchange.cpp',·['../gromacs_2mdrun_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)'],28 ····['replicaexchange_2ecpp_22',·['replicaexchange.cpp',·['../programs_2mdrun_2tests_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)'],
29 ········['../programs_2mdrun_2tests_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)']29 ········['../gromacs_2mdrun_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)']
30 ····]],30 ····]],
31 ····['replicaexchange_2eh_23',·['replicaexchange.h',·['../replicaexchange_8h.xhtml',·1,·'']]],31 ····['replicaexchange_2eh_23',·['replicaexchange.h',·['../replicaexchange_8h.xhtml',·1,·'']]],
32 ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]],32 ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]],
33 ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]],33 ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]],
34 ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]],34 ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]],
35 ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]],35 ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]],
36 ····['requirements_2ecpp_28',·['requirements.cpp',·['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)'],36 ····['requirements_2ecpp_28',·['requirements.cpp',·['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)'],
37 ········['../tests_2requirements_8cpp.xhtml',·1,·'(Global·Namespace)']37 ········['../tests_2requirements_8cpp.xhtml',·1,·'(Global·Namespace)']
38 ····]],38 ····]],
39 ····['requirements_2eh_29',·['requirements.h',·['../requirements_8h.xhtml',·1,·'(Global·Namespace)'],39 ····['requirements_2eh_29',·['requirements.h',·['../tests_2requirements_8h.xhtml',·1,·'(Global·Namespace)'],
40 ········['../tests_2requirements_8h.xhtml',·1,·'(Global·Namespace)']40 ········['../requirements_8h.xhtml',·1,·'(Global·Namespace)']
41 ····]],41 ····]],
42 ····['rerun_2ecpp_30',·['rerun.cpp',·['../gromacs_2mdrun_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'],42 ····['rerun_2ecpp_30',·['rerun.cpp',·['../programs_2mdrun_2tests_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'],
43 ········['../programs_2mdrun_2tests_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)']43 ········['../gromacs_2mdrun_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)']
44 ····]],44 ····]],
45 ····['resall_2eh_31',·['resall.h',·['../resall_8h.xhtml',·1,·'']]],45 ····['resall_2eh_31',·['resall.h',·['../resall_8h.xhtml',·1,·'']]],
46 ····['resethandler_2ecpp_32',·['resethandler.cpp',·['../resethandler_8cpp.xhtml',·1,·'']]],46 ····['resethandler_2ecpp_32',·['resethandler.cpp',·['../resethandler_8cpp.xhtml',·1,·'']]],
47 ····['resethandler_2eh_33',·['resethandler.h',·['../resethandler_8h.xhtml',·1,·'']]],47 ····['resethandler_2eh_33',·['resethandler.h',·['../resethandler_8h.xhtml',·1,·'']]],
48 ····['resourcedivision_2ecpp_34',·['resourcedivision.cpp',·['../resourcedivision_8cpp.xhtml',·1,·'']]],48 ····['resourcedivision_2ecpp_34',·['resourcedivision.cpp',·['../resourcedivision_8cpp.xhtml',·1,·'']]],
49 ····['resourcedivision_2eh_35',·['resourcedivision.h',·['../resourcedivision_8h.xhtml',·1,·'']]],49 ····['resourcedivision_2eh_35',·['resourcedivision.h',·['../resourcedivision_8h.xhtml',·1,·'']]],
50 ····['restcbt_2ecpp_36',·['restcbt.cpp',·['../restcbt_8cpp.xhtml',·1,·'']]],50 ····['restcbt_2ecpp_36',·['restcbt.cpp',·['../restcbt_8cpp.xhtml',·1,·'']]],
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1 var·searchData·=·[1 var·searchData·=·[
2 ····['sasa_2ecpp_0',·['sasa.cpp',·['../modules_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)'],2 ····['sasa_2ecpp_0',·['sasa.cpp',·['../tests_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)'],
3 ········['../tests_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)']3 ········['../modules_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)']
4 ····]],4 ····]],
5 ····['sasa_2eh_1',·['sasa.h',·['../sasa_8h.xhtml',·1,·'']]],5 ····['sasa_2eh_1',·['sasa.h',·['../sasa_8h.xhtml',·1,·'']]],
6 ····['scalar_2eh_2',·['scalar.h',·['../scalar_8h.xhtml',·1,·'']]],6 ····['scalar_2eh_2',·['scalar.h',·['../scalar_8h.xhtml',·1,·'']]],
7 ····['scalar_5fmath_2eh_3',·['scalar_math.h',·['../scalar__math_8h.xhtml',·1,·'']]],7 ····['scalar_5fmath_2eh_3',·['scalar_math.h',·['../scalar__math_8h.xhtml',·1,·'']]],
8 ····['scalar_5futil_2eh_4',·['scalar_util.h',·['../scalar__util_8h.xhtml',·1,·'']]],8 ····['scalar_5futil_2eh_4',·['scalar_util.h',·['../scalar__util_8h.xhtml',·1,·'']]],
9 ····['scanner_2eh_5',·['scanner.h',·['../scanner_8h.xhtml',·1,·'']]],9 ····['scanner_2eh_5',·['scanner.h',·['../scanner_8h.xhtml',·1,·'']]],
10 ····['scanner_5finternal_2ecpp_6',·['scanner_internal.cpp',·['../scanner__internal_8cpp.xhtml',·1,·'']]],10 ····['scanner_5finternal_2ecpp_6',·['scanner_internal.cpp',·['../scanner__internal_8cpp.xhtml',·1,·'']]],
Offset 19, 16 lines modifiedOffset 19, 16 lines modified
19 ········['../modules_2scattering_8cpp.xhtml',·1,·'(Global·Namespace)']19 ········['../modules_2scattering_8cpp.xhtml',·1,·'(Global·Namespace)']
20 ····]],20 ····]],
21 ····['scattering_2eh_15',·['scattering.h',·['../scattering_8h.xhtml',·1,·'']]],21 ····['scattering_2eh_15',·['scattering.h',·['../scattering_8h.xhtml',·1,·'']]],
22 ····['scatteringfactors_2ecpp_16',·['scatteringfactors.cpp',·['../scatteringfactors_8cpp.xhtml',·1,·'']]],22 ····['scatteringfactors_2ecpp_16',·['scatteringfactors.cpp',·['../scatteringfactors_8cpp.xhtml',·1,·'']]],
23 ····['scatteringfactors_2eh_17',·['scatteringfactors.h',·['../scatteringfactors_8h.xhtml',·1,·'']]],23 ····['scatteringfactors_2eh_17',·['scatteringfactors.h',·['../scatteringfactors_8h.xhtml',·1,·'']]],
24 ····['seed_2ecpp_18',·['seed.cpp',·['../tests_2seed_8cpp.xhtml',·1,·'']]],24 ····['seed_2ecpp_18',·['seed.cpp',·['../tests_2seed_8cpp.xhtml',·1,·'']]],
25 ····['seed_2eh_19',·['seed.h',·['../seed_8h.xhtml',·1,·'']]],25 ····['seed_2eh_19',·['seed.h',·['../seed_8h.xhtml',·1,·'']]],
26 ····['select_2ecpp_20',·['select.cpp',·['../modules_2select_8cpp.xhtml',·1,·'(Global·Namespace)'],26 ····['select_2ecpp_20',·['select.cpp',·['../tests_2select_8cpp.xhtml',·1,·'(Global·Namespace)'],
27 ········['../tests_2select_8cpp.xhtml',·1,·'(Global·Namespace)']27 ········['../modules_2select_8cpp.xhtml',·1,·'(Global·Namespace)']
28 ····]],28 ····]],
29 ····['select_2eh_21',·['select.h',·['../select_8h.xhtml',·1,·'']]],29 ····['select_2eh_21',·['select.h',·['../select_8h.xhtml',·1,·'']]],
30 ····['selection_2ecpp_22',·['selection.cpp',·['../selection_8cpp.xhtml',·1,·'']]],30 ····['selection_2ecpp_22',·['selection.cpp',·['../selection_8cpp.xhtml',·1,·'']]],
31 ····['selection_2eh_23',·['selection.h',·['../selection_8h.xhtml',·1,·'']]],31 ····['selection_2eh_23',·['selection.h',·['../selection_8h.xhtml',·1,·'']]],
32 ····['selectioncollection_2ecpp_24',·['selectioncollection.cpp',·['../tests_2selectioncollection_8cpp.xhtml',·1,·'(Global·Namespace)'],32 ····['selectioncollection_2ecpp_24',·['selectioncollection.cpp',·['../tests_2selectioncollection_8cpp.xhtml',·1,·'(Global·Namespace)'],
33 ········['../selectioncollection_8cpp.xhtml',·1,·'(Global·Namespace)']33 ········['../selectioncollection_8cpp.xhtml',·1,·'(Global·Namespace)']
34 ····]],34 ····]],
Offset 62, 16 lines modifiedOffset 62, 16 lines modified
62 ····['setbothtime_2ecpp_48',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],62 ····['setbothtime_2ecpp_48',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],
63 ····['setbox_2eh_49',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]],63 ····['setbox_2eh_49',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]],
64 ····['setenv_2eh_50',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]],64 ····['setenv_2eh_50',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]],
65 ····['setforces_2ecpp_51',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]],65 ····['setforces_2ecpp_51',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]],
66 ····['setforces_2eh_52',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]],66 ····['setforces_2eh_52',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]],
67 ····['setprecision_2ecpp_53',·['setprecision.cpp',·['../setprecision_8cpp.xhtml',·1,·'']]],67 ····['setprecision_2ecpp_53',·['setprecision.cpp',·['../setprecision_8cpp.xhtml',·1,·'']]],
68 ····['setprecision_2eh_54',·['setprecision.h',·['../setprecision_8h.xhtml',·1,·'']]],68 ····['setprecision_2eh_54',·['setprecision.h',·['../setprecision_8h.xhtml',·1,·'']]],
69 ····['setstarttime_2ecpp_55',·['setstarttime.cpp',·['../tests_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)'],69 ····['setstarttime_2ecpp_55',·['setstarttime.cpp',·['../outputadapters_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)'],
70 ········['../outputadapters_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)']70 ········['../tests_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)']
71 ····]],71 ····]],
72 ····['setstarttime_2eh_56',·['setstarttime.h',·['../setstarttime_8h.xhtml',·1,·'']]],72 ····['setstarttime_2eh_56',·['setstarttime.h',·['../setstarttime_8h.xhtml',·1,·'']]],
73 ····['settimestep_2ecpp_57',·['settimestep.cpp',·['../outputadapters_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'],73 ····['settimestep_2ecpp_57',·['settimestep.cpp',·['../outputadapters_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'],
74 ········['../tests_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)']74 ········['../tests_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)']
75 ····]],75 ····]],
76 ····['settimestep_2eh_58',·['settimestep.h',·['../settimestep_8h.xhtml',·1,·'']]],76 ····['settimestep_2eh_58',·['settimestep.h',·['../settimestep_8h.xhtml',·1,·'']]],
77 ····['settle_2ecpp_59',·['settle.cpp',·['../tests_2settle_8cpp.xhtml',·1,·'(Global·Namespace)'],77 ····['settle_2ecpp_59',·['settle.cpp',·['../tests_2settle_8cpp.xhtml',·1,·'(Global·Namespace)'],
Offset 91, 16 lines modifiedOffset 91, 16 lines modified
91 ····['setvelocities_2eh_71',·['setvelocities.h',·['../setvelocities_8h.xhtml',·1,·'']]],91 ····['setvelocities_2eh_71',·['setvelocities.h',·['../setvelocities_8h.xhtml',·1,·'']]],
92 ····['shake_2ecpp_72',·['shake.cpp',·['../shake_8cpp.xhtml',·1,·'']]],92 ····['shake_2ecpp_72',·['shake.cpp',·['../shake_8cpp.xhtml',·1,·'']]],
93 ····['shake_2eh_73',·['shake.h',·['../shake_8h.xhtml',·1,·'']]],93 ····['shake_2eh_73',·['shake.h',·['../shake_8h.xhtml',·1,·'']]],
94 ····['shellcompletions_2ecpp_74',·['shellcompletions.cpp',·['../shellcompletions_8cpp.xhtml',·1,·'']]],94 ····['shellcompletions_2ecpp_74',·['shellcompletions.cpp',·['../shellcompletions_8cpp.xhtml',·1,·'']]],
95 ····['shellcompletions_2eh_75',·['shellcompletions.h',·['../shellcompletions_8h.xhtml',·1,·'']]],95 ····['shellcompletions_2eh_75',·['shellcompletions.h',·['../shellcompletions_8h.xhtml',·1,·'']]],
96 ····['signallers_2ecpp_76',·['signallers.cpp',·['../signallers_8cpp.xhtml',·1,·'']]],96 ····['signallers_2ecpp_76',·['signallers.cpp',·['../signallers_8cpp.xhtml',·1,·'']]],
97 ····['signallers_2eh_77',·['signallers.h',·['../signallers_8h.xhtml',·1,·'']]],97 ····['signallers_2eh_77',·['signallers.h',·['../signallers_8h.xhtml',·1,·'']]],
98 ····['simd_2eh_78',·['simd.h',·['../tests_2simd_8h.xhtml',·1,·'(Global·Namespace)'],98 ····['simd_2eh_78',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'(Global·Namespace)'],
99 ········['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'(Global·Namespace)']99 ········['../tests_2simd_8h.xhtml',·1,·'(Global·Namespace)']
100 ····]],100 ····]],
101 ····['simd4_2eh_79',·['simd4.h',·['../simd4_8h.xhtml',·1,·'']]],101 ····['simd4_2eh_79',·['simd4.h',·['../simd4_8h.xhtml',·1,·'']]],
102 ····['simd_5fkernel_2eh_80',·['simd_kernel.h',·['../simd__kernel_8h.xhtml',·1,·'']]],102 ····['simd_5fkernel_2eh_80',·['simd_kernel.h',·['../simd__kernel_8h.xhtml',·1,·'']]],
103 ····['simd_5fload_5fstore_5ffunctions_2eh_81',·['simd_load_store_functions.h',·['../simd__load__store__functions_8h.xhtml',·1,·'']]],103 ····['simd_5fload_5fstore_5ffunctions_2eh_81',·['simd_load_store_functions.h',·['../simd__load__store__functions_8h.xhtml',·1,·'']]],
104 ····['simd_5fmath_2eh_82',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],104 ····['simd_5fmath_2eh_82',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],
105 ····['simd_5fmemory_2ecpp_83',·['simd_memory.cpp',·['../simd__memory_8cpp.xhtml',·1,·'']]],105 ····['simd_5fmemory_2ecpp_83',·['simd_memory.cpp',·['../simd__memory_8cpp.xhtml',·1,·'']]],
106 ····['simd_5fmemory_2eh_84',·['simd_memory.h',·['../simd__memory_8h.xhtml',·1,·'']]],106 ····['simd_5fmemory_2eh_84',·['simd_memory.h',·['../simd__memory_8h.xhtml',·1,·'']]],
Offset 174, 14 lines modifiedOffset 174, 14 lines modified
174 ········['../programs_2mdrun_2tests_2swapcoords_8cpp.xhtml',·1,·'(Global·Namespace)']174 ········['../programs_2mdrun_2tests_2swapcoords_8cpp.xhtml',·1,·'(Global·Namespace)']
175 ····]],175 ····]],
176 ····['swapcoords_2eh_146',·['swapcoords.h',·['../swapcoords_8h.xhtml',·1,·'']]],176 ····['swapcoords_2eh_146',·['swapcoords.h',·['../swapcoords_8h.xhtml',·1,·'']]],
177 ····['sycl_5fkernel_5futils_2eh_147',·['sycl_kernel_utils.h',·['../sycl__kernel__utils_8h.xhtml',·1,·'']]],177 ····['sycl_5fkernel_5futils_2eh_147',·['sycl_kernel_utils.h',·['../sycl__kernel__utils_8h.xhtml',·1,·'']]],
178 ····['syclutils_2eh_148',·['syclutils.h',·['../syclutils_8h.xhtml',·1,·'']]],178 ····['syclutils_2eh_148',·['syclutils.h',·['../syclutils_8h.xhtml',·1,·'']]],
179 ····['symrec_2ecpp_149',·['symrec.cpp',·['../symrec_8cpp.xhtml',·1,·'']]],179 ····['symrec_2ecpp_149',·['symrec.cpp',·['../symrec_8cpp.xhtml',·1,·'']]],
180 ····['symrec_2eh_150',·['symrec.h',·['../symrec_8h.xhtml',·1,·'']]],180 ····['symrec_2eh_150',·['symrec.h',·['../symrec_8h.xhtml',·1,·'']]],
181 ····['symtab_2ecpp_151',·['symtab.cpp',·['../tests_2symtab_8cpp.xhtml',·1,·'(Global·Namespace)'],181 ····['symtab_2ecpp_151',·['symtab.cpp',·['../symtab_8cpp.xhtml',·1,·'(Global·Namespace)'],
182 ········['../symtab_8cpp.xhtml',·1,·'(Global·Namespace)']182 ········['../tests_2symtab_8cpp.xhtml',·1,·'(Global·Namespace)']
183 ····]],183 ····]],
184 ····['symtab_2eh_152',·['symtab.h',·['../symtab_8h.xhtml',·1,·'']]],184 ····['symtab_2eh_152',·['symtab.h',·['../symtab_8h.xhtml',·1,·'']]],
185 ····['sysinfo_2ecpp_153',·['sysinfo.cpp',·['../sysinfo_8cpp.xhtml',·1,·'']]],185 ····['sysinfo_2ecpp_153',·['sysinfo.cpp',·['../sysinfo_8cpp.xhtml',·1,·'']]],
186 ····['sysinfo_2eh_154',·['sysinfo.h',·['../sysinfo_8h.xhtml',·1,·'']]]186 ····['sysinfo_2eh_154',·['sysinfo.h',·['../sysinfo_8h.xhtml',·1,·'']]]
187 ];187 ];
1010 B
./usr/share/doc/gromacs/html/doxygen/html-full/search/files_13.js
880 B
js-beautify {}
    
Offset 20, 12 lines modifiedOffset 20, 12 lines modified
20 ········['../usergpuids_8cpp.xhtml',·1,·'(Global·Namespace)']20 ········['../usergpuids_8cpp.xhtml',·1,·'(Global·Namespace)']
21 ····]],21 ····]],
22 ····['usergpuids_2eh_18',·['usergpuids.h',·['../usergpuids_8h.xhtml',·1,·'']]],22 ····['usergpuids_2eh_18',·['usergpuids.h',·['../usergpuids_8h.xhtml',·1,·'']]],
23 ····['utilities_2eh_19',·['utilities.h',·['../src_2gromacs_2mimic_2utilities_8h.xhtml',·1,·'(Global·Namespace)'],23 ····['utilities_2eh_19',·['utilities.h',·['../src_2gromacs_2mimic_2utilities_8h.xhtml',·1,·'(Global·Namespace)'],
24 ········['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)']24 ········['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['utility_2ecpp_20',·['utility.cpp',·['../utility_8cpp.xhtml',·1,·'']]],26 ····['utility_2ecpp_20',·['utility.cpp',·['../utility_8cpp.xhtml',·1,·'']]],
27 ····['utility_2eh_21',·['utility.h',·['../compat_2utility_8h.xhtml',·1,·'(Global·Namespace)'],27 ····['utility_2eh_21',·['utility.h',·['../utility_8h.xhtml',·1,·'(Global·Namespace)'],
28 ········['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)'],28 ········['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)'],
29 ········['../utility_8h.xhtml',·1,·'(Global·Namespace)']29 ········['../compat_2utility_8h.xhtml',·1,·'(Global·Namespace)']
30 ····]]30 ····]]
31 ];31 ];
6.13 KB
./usr/share/doc/gromacs/html/doxygen/html-full/search/files_2.js
6.0 KB
js-beautify {}
    
Offset 30, 16 lines modifiedOffset 30, 16 lines modified
30 ········['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)']30 ········['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)']
31 ····]],31 ····]],
32 ····['cmdlinehelpwriter_2eh_22',·['cmdlinehelpwriter.h',·['../cmdlinehelpwriter_8h.xhtml',·1,·'']]],32 ····['cmdlinehelpwriter_2eh_22',·['cmdlinehelpwriter.h',·['../cmdlinehelpwriter_8h.xhtml',·1,·'']]],
33 ····['cmdlineinit_2ecpp_23',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]],33 ····['cmdlineinit_2ecpp_23',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]],
34 ····['cmdlineinit_2eh_24',·['cmdlineinit.h',·['../cmdlineinit_8h.xhtml',·1,·'']]],34 ····['cmdlineinit_2eh_24',·['cmdlineinit.h',·['../cmdlineinit_8h.xhtml',·1,·'']]],
35 ····['cmdlinemodule_2ecpp_25',·['cmdlinemodule.cpp',·['../cmdlinemodule_8cpp.xhtml',·1,·'']]],35 ····['cmdlinemodule_2ecpp_25',·['cmdlinemodule.cpp',·['../cmdlinemodule_8cpp.xhtml',·1,·'']]],
36 ····['cmdlinemodule_2eh_26',·['cmdlinemodule.h',·['../cmdlinemodule_8h.xhtml',·1,·'']]],36 ····['cmdlinemodule_2eh_26',·['cmdlinemodule.h',·['../cmdlinemodule_8h.xhtml',·1,·'']]],
37 ····['cmdlinemodulemanager_2ecpp_27',·['cmdlinemodulemanager.cpp',·['../tests_2cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'],37 ····['cmdlinemodulemanager_2ecpp_27',·['cmdlinemodulemanager.cpp',·['../cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
38 ········['../cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)']38 ········['../tests_2cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)']
39 ····]],39 ····]],
40 ····['cmdlinemodulemanager_2eh_28',·['cmdlinemodulemanager.h',·['../cmdlinemodulemanager_8h.xhtml',·1,·'']]],40 ····['cmdlinemodulemanager_2eh_28',·['cmdlinemodulemanager.h',·['../cmdlinemodulemanager_8h.xhtml',·1,·'']]],
41 ····['cmdlinemodulemanager_5fimpl_2eh_29',·['cmdlinemodulemanager_impl.h',·['../cmdlinemodulemanager__impl_8h.xhtml',·1,·'']]],41 ····['cmdlinemodulemanager_5fimpl_2eh_29',·['cmdlinemodulemanager_impl.h',·['../cmdlinemodulemanager__impl_8h.xhtml',·1,·'']]],
42 ····['cmdlinemodulemanagertest_2ecpp_30',·['cmdlinemodulemanagertest.cpp',·['../cmdlinemodulemanagertest_8cpp.xhtml',·1,·'']]],42 ····['cmdlinemodulemanagertest_2ecpp_30',·['cmdlinemodulemanagertest.cpp',·['../cmdlinemodulemanagertest_8cpp.xhtml',·1,·'']]],
43 ····['cmdlinemodulemanagertest_2eh_31',·['cmdlinemodulemanagertest.h',·['../cmdlinemodulemanagertest_8h.xhtml',·1,·'']]],43 ····['cmdlinemodulemanagertest_2eh_31',·['cmdlinemodulemanagertest.h',·['../cmdlinemodulemanagertest_8h.xhtml',·1,·'']]],
44 ····['cmdlineoptionsmodule_2ecpp_32',·['cmdlineoptionsmodule.cpp',·['../cmdlineoptionsmodule_8cpp.xhtml',·1,·'']]],44 ····['cmdlineoptionsmodule_2ecpp_32',·['cmdlineoptionsmodule.cpp',·['../cmdlineoptionsmodule_8cpp.xhtml',·1,·'']]],
45 ····['cmdlineoptionsmodule_2eh_33',·['cmdlineoptionsmodule.h',·['../cmdlineoptionsmodule_8h.xhtml',·1,·'']]],45 ····['cmdlineoptionsmodule_2eh_33',·['cmdlineoptionsmodule.h',·['../cmdlineoptionsmodule_8h.xhtml',·1,·'']]],
Offset 65, 26 lines modifiedOffset 65, 26 lines modified
65 ····['colvarsforceprovider_2ecpp_47',·['colvarsforceprovider.cpp',·['../tests_2colvarsforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],65 ····['colvarsforceprovider_2ecpp_47',·['colvarsforceprovider.cpp',·['../tests_2colvarsforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
66 ········['../colvarsforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']66 ········['../colvarsforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
67 ····]],67 ····]],
68 ····['colvarsforceprovider_2eh_48',·['colvarsforceprovider.h',·['../colvarsforceprovider_8h.xhtml',·1,·'']]],68 ····['colvarsforceprovider_2eh_48',·['colvarsforceprovider.h',·['../colvarsforceprovider_8h.xhtml',·1,·'']]],
69 ····['colvarsmdmodule_2ecpp_49',·['colvarsMDModule.cpp',·['../colvarsMDModule_8cpp.xhtml',·1,·'']]],69 ····['colvarsmdmodule_2ecpp_49',·['colvarsMDModule.cpp',·['../colvarsMDModule_8cpp.xhtml',·1,·'']]],
70 ····['colvarsmdmodule_2eh_50',·['colvarsMDModule.h',·['../colvarsMDModule_8h.xhtml',·1,·'']]],70 ····['colvarsmdmodule_2eh_50',·['colvarsMDModule.h',·['../colvarsMDModule_8h.xhtml',·1,·'']]],
71 ····['colvarsmdmodule_5fstub_2ecpp_51',·['colvarsMDModule_stub.cpp',·['../colvarsMDModule__stub_8cpp.xhtml',·1,·'']]],71 ····['colvarsmdmodule_5fstub_2ecpp_51',·['colvarsMDModule_stub.cpp',·['../colvarsMDModule__stub_8cpp.xhtml',·1,·'']]],
72 ····['colvarsoptions_2ecpp_52',·['colvarsoptions.cpp',·['../tests_2colvarsoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],72 ····['colvarsoptions_2ecpp_52',·['colvarsoptions.cpp',·['../colvarsoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
73 ········['../colvarsoptions_8cpp.xhtml',·1,·'(Global·Namespace)']73 ········['../tests_2colvarsoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
74 ····]],74 ····]],
75 ····['colvarsoptions_2eh_53',·['colvarsoptions.h',·['../colvarsoptions_8h.xhtml',·1,·'']]],75 ····['colvarsoptions_2eh_53',·['colvarsoptions.h',·['../colvarsoptions_8h.xhtml',·1,·'']]],
76 ····['colvarspreprocessor_2ecpp_54',·['colvarspreprocessor.cpp',·['../colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],76 ····['colvarspreprocessor_2ecpp_54',·['colvarspreprocessor.cpp',·['../tests_2colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
77 ········['../tests_2colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']77 ········['../colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
78 ····]],78 ····]],
79 ····['colvarspreprocessor_2eh_55',·['colvarspreprocessor.h',·['../colvarspreprocessor_8h.xhtml',·1,·'']]],79 ····['colvarspreprocessor_2eh_55',·['colvarspreprocessor.h',·['../colvarspreprocessor_8h.xhtml',·1,·'']]],
80 ····['colvarssimulationsparameters_2ecpp_56',·['colvarssimulationsparameters.cpp',·['../colvarssimulationsparameters_8cpp.xhtml',·1,·'']]],80 ····['colvarssimulationsparameters_2ecpp_56',·['colvarssimulationsparameters.cpp',·['../colvarssimulationsparameters_8cpp.xhtml',·1,·'']]],
81 ····['colvarssimulationsparameters_2eh_57',·['colvarssimulationsparameters.h',·['../colvarssimulationsparameters_8h.xhtml',·1,·'']]],81 ····['colvarssimulationsparameters_2eh_57',·['colvarssimulationsparameters.h',·['../colvarssimulationsparameters_8h.xhtml',·1,·'']]],
82 ····['com_2ecpp_58',·['com.cpp',·['../tests_2com_8cpp.xhtml',·1,·'(Global·Namespace)'],82 ····['com_2ecpp_58',·['com.cpp',·['../com_8cpp.xhtml',·1,·'(Global·Namespace)'],
83 ········['../com_8cpp.xhtml',·1,·'(Global·Namespace)']83 ········['../tests_2com_8cpp.xhtml',·1,·'(Global·Namespace)']
84 ····]],84 ····]],
85 ····['com_2eh_59',·['com.h',·['../com_8h.xhtml',·1,·'']]],85 ····['com_2eh_59',·['com.h',·['../com_8h.xhtml',·1,·'']]],
86 ····['compare_2eh_60',·['compare.h',·['../compare_8h.xhtml',·1,·'']]],86 ····['compare_2eh_60',·['compare.h',·['../compare_8h.xhtml',·1,·'']]],
87 ····['comparison_5fhelpers_2eh_61',·['comparison_helpers.h',·['../comparison__helpers_8h.xhtml',·1,·'']]],87 ····['comparison_5fhelpers_2eh_61',·['comparison_helpers.h',·['../comparison__helpers_8h.xhtml',·1,·'']]],
88 ····['compiler_2ecpp_62',·['compiler.cpp',·['../compiler_8cpp.xhtml',·1,·'']]],88 ····['compiler_2ecpp_62',·['compiler.cpp',·['../compiler_8cpp.xhtml',·1,·'']]],
89 ····['compiler_2eh_63',·['compiler.h',·['../compiler_8h.xhtml',·1,·'']]],89 ····['compiler_2eh_63',·['compiler.h',·['../compiler_8h.xhtml',·1,·'']]],
90 ····['compositesimulatorelement_2ecpp_64',·['compositesimulatorelement.cpp',·['../compositesimulatorelement_8cpp.xhtml',·1,·'']]],90 ····['compositesimulatorelement_2ecpp_64',·['compositesimulatorelement.cpp',·['../compositesimulatorelement_8cpp.xhtml',·1,·'']]],
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130 ····['correlationdataset_2eh_98',·['correlationdataset.h',·['../correlationdataset_8h.xhtml',·1,·'']]],130 ····['correlationdataset_2eh_98',·['correlationdataset.h',·['../correlationdataset_8h.xhtml',·1,·'']]],
131 ····['correlationgrid_2ecpp_99',·['correlationgrid.cpp',·['../correlationgrid_8cpp.xhtml',·1,·'']]],131 ····['correlationgrid_2ecpp_99',·['correlationgrid.cpp',·['../correlationgrid_8cpp.xhtml',·1,·'']]],
132 ····['correlationgrid_2eh_100',·['correlationgrid.h',·['../correlationgrid_8h.xhtml',·1,·'']]],132 ····['correlationgrid_2eh_100',·['correlationgrid.h',·['../correlationgrid_8h.xhtml',·1,·'']]],
133 ····['correlationhistory_2ecpp_101',·['correlationhistory.cpp',·['../correlationhistory_8cpp.xhtml',·1,·'']]],133 ····['correlationhistory_2ecpp_101',·['correlationhistory.cpp',·['../correlationhistory_8cpp.xhtml',·1,·'']]],
134 ····['correlationhistory_2eh_102',·['correlationhistory.h',·['../correlationhistory_8h.xhtml',·1,·'']]],134 ····['correlationhistory_2eh_102',·['correlationhistory.h',·['../correlationhistory_8h.xhtml',·1,·'']]],
135 ····['correlationtensor_2ecpp_103',·['correlationtensor.cpp',·['../correlationtensor_8cpp.xhtml',·1,·'']]],135 ····['correlationtensor_2ecpp_103',·['correlationtensor.cpp',·['../correlationtensor_8cpp.xhtml',·1,·'']]],
136 ····['correlationtensor_2eh_104',·['correlationtensor.h',·['../correlationtensor_8h.xhtml',·1,·'']]],136 ····['correlationtensor_2eh_104',·['correlationtensor.h',·['../correlationtensor_8h.xhtml',·1,·'']]],
137 ····['cpuinfo_2ecpp_105',·['cpuinfo.cpp',·['../tests_2cpuinfo_8cpp.xhtml',·1,·'(Global·Namespace)'],137 ····['cpuinfo_2ecpp_105',·['cpuinfo.cpp',·['../cpuinfo_8cpp.xhtml',·1,·'(Global·Namespace)'],
138 ········['../cpuinfo_8cpp.xhtml',·1,·'(Global·Namespace)']138 ········['../tests_2cpuinfo_8cpp.xhtml',·1,·'(Global·Namespace)']
139 ····]],139 ····]],
140 ····['cpuinfo_2eh_106',·['cpuinfo.h',·['../cpuinfo_8h.xhtml',·1,·'']]],140 ····['cpuinfo_2eh_106',·['cpuinfo.h',·['../cpuinfo_8h.xhtml',·1,·'']]],
141 ····['crosscorr_2ecpp_107',·['crosscorr.cpp',·['../crosscorr_8cpp.xhtml',·1,·'']]],141 ····['crosscorr_2ecpp_107',·['crosscorr.cpp',·['../crosscorr_8cpp.xhtml',·1,·'']]],
142 ····['crosscorr_2eh_108',·['crosscorr.h',·['../crosscorr_8h.xhtml',·1,·'']]],142 ····['crosscorr_2eh_108',·['crosscorr.h',·['../crosscorr_8h.xhtml',·1,·'']]],
143 ····['cstringutil_2ecpp_109',·['cstringutil.cpp',·['../tests_2cstringutil_8cpp.xhtml',·1,·'']]],143 ····['cstringutil_2ecpp_109',·['cstringutil.cpp',·['../tests_2cstringutil_8cpp.xhtml',·1,·'']]],
144 ····['cstringutil_2eh_110',·['cstringutil.h',·['../cstringutil_8h.xhtml',·1,·'']]],144 ····['cstringutil_2eh_110',·['cstringutil.h',·['../cstringutil_8h.xhtml',·1,·'']]],
145 ····['cubicsplinetable_2ecpp_111',·['cubicsplinetable.cpp',·['../cubicsplinetable_8cpp.xhtml',·1,·'']]],145 ····['cubicsplinetable_2ecpp_111',·['cubicsplinetable.cpp',·['../cubicsplinetable_8cpp.xhtml',·1,·'']]],
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Offset 27, 25 lines modifiedOffset 27, 25 lines modified
27 ····['densityfitting_2ecpp_23',·['densityfitting.cpp',·['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],27 ····['densityfitting_2ecpp_23',·['densityfitting.cpp',·['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],
28 ········['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']28 ········['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']
29 ····]],29 ····]],
30 ····['densityfittingamplitudelookup_2ecpp_24',·['densityfittingamplitudelookup.cpp',·['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],30 ····['densityfittingamplitudelookup_2ecpp_24',·['densityfittingamplitudelookup.cpp',·['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],
31 ········['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']31 ········['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],33 ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],
34 ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']
36 ····]],36 ····]],
37 ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],37 ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],
38 ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],38 ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
39 ········['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']39 ········['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
40 ····]],40 ····]],
41 ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],41 ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],
42 ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],42 ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],
43 ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],43 ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
44 ········['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)']44 ········['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
45 ····]],45 ····]],
46 ····['densityfittingoptions_2eh_32',·['densityfittingoptions.h',·['../densityfittingoptions_8h.xhtml',·1,·'']]],46 ····['densityfittingoptions_2eh_32',·['densityfittingoptions.h',·['../densityfittingoptions_8h.xhtml',·1,·'']]],
47 ····['densityfittingoutputprovider_2ecpp_33',·['densityfittingoutputprovider.cpp',·['../densityfittingoutputprovider_8cpp.xhtml',·1,·'']]],47 ····['densityfittingoutputprovider_2ecpp_33',·['densityfittingoutputprovider.cpp',·['../densityfittingoutputprovider_8cpp.xhtml',·1,·'']]],
48 ····['densityfittingoutputprovider_2eh_34',·['densityfittingoutputprovider.h',·['../densityfittingoutputprovider_8h.xhtml',·1,·'']]],48 ····['densityfittingoutputprovider_2eh_34',·['densityfittingoutputprovider.h',·['../densityfittingoutputprovider_8h.xhtml',·1,·'']]],
49 ····['densityfittingparameters_2eh_35',·['densityfittingparameters.h',·['../densityfittingparameters_8h.xhtml',·1,·'']]],49 ····['densityfittingparameters_2eh_35',·['densityfittingparameters.h',·['../densityfittingparameters_8h.xhtml',·1,·'']]],
50 ····['device_5favailability_2ecpp_36',·['device_availability.cpp',·['../device__availability_8cpp.xhtml',·1,·'']]],50 ····['device_5favailability_2ecpp_36',·['device_availability.cpp',·['../device__availability_8cpp.xhtml',·1,·'']]],
51 ····['device_5fbuffer_2ecpp_37',·['device_buffer.cpp',·['../device__buffer_8cpp.xhtml',·1,·'']]],51 ····['device_5fbuffer_2ecpp_37',·['device_buffer.cpp',·['../device__buffer_8cpp.xhtml',·1,·'']]],
Offset 53, 16 lines modifiedOffset 53, 16 lines modified
53 ····['device_5fcontext_2eh_39',·['device_context.h',·['../device__context_8h.xhtml',·1,·'']]],53 ····['device_5fcontext_2eh_39',·['device_context.h',·['../device__context_8h.xhtml',·1,·'']]],
54 ····['device_5fcontext_5focl_2ecpp_40',·['device_context_ocl.cpp',·['../device__context__ocl_8cpp.xhtml',·1,·'']]],54 ····['device_5fcontext_5focl_2ecpp_40',·['device_context_ocl.cpp',·['../device__context__ocl_8cpp.xhtml',·1,·'']]],
55 ····['device_5fcontext_5fsycl_2ecpp_41',·['device_context_sycl.cpp',·['../device__context__sycl_8cpp.xhtml',·1,·'']]],55 ····['device_5fcontext_5fsycl_2ecpp_41',·['device_context_sycl.cpp',·['../device__context__sycl_8cpp.xhtml',·1,·'']]],
56 ····['device_5fevent_2eh_42',·['device_event.h',·['../device__event_8h.xhtml',·1,·'']]],56 ····['device_5fevent_2eh_42',·['device_event.h',·['../device__event_8h.xhtml',·1,·'']]],
57 ····['device_5fevent_5focl_2eh_43',·['device_event_ocl.h',·['../device__event__ocl_8h.xhtml',·1,·'']]],57 ····['device_5fevent_5focl_2eh_43',·['device_event_ocl.h',·['../device__event__ocl_8h.xhtml',·1,·'']]],
58 ····['device_5fevent_5fsycl_2eh_44',·['device_event_sycl.h',·['../device__event__sycl_8h.xhtml',·1,·'']]],58 ····['device_5fevent_5fsycl_2eh_44',·['device_event_sycl.h',·['../device__event__sycl_8h.xhtml',·1,·'']]],
59 ····['device_5finformation_2eh_45',·['device_information.h',·['../device__information_8h.xhtml',·1,·'']]],59 ····['device_5finformation_2eh_45',·['device_information.h',·['../device__information_8h.xhtml',·1,·'']]],
60 ····['device_5fmanagement_2ecpp_46',·['device_management.cpp',·['../tests_2device__management_8cpp.xhtml',·1,·'(Global·Namespace)'],60 ····['device_5fmanagement_2ecpp_46',·['device_management.cpp',·['../device__management_8cpp.xhtml',·1,·'(Global·Namespace)'],
61 ········['../device__management_8cpp.xhtml',·1,·'(Global·Namespace)']61 ········['../tests_2device__management_8cpp.xhtml',·1,·'(Global·Namespace)']
62 ····]],62 ····]],
63 ····['device_5fmanagement_2eh_47',·['device_management.h',·['../device__management_8h.xhtml',·1,·'']]],63 ····['device_5fmanagement_2eh_47',·['device_management.h',·['../device__management_8h.xhtml',·1,·'']]],
64 ····['device_5fmanagement_5fcommon_2ecpp_48',·['device_management_common.cpp',·['../device__management__common_8cpp.xhtml',·1,·'']]],64 ····['device_5fmanagement_5fcommon_2ecpp_48',·['device_management_common.cpp',·['../device__management__common_8cpp.xhtml',·1,·'']]],
65 ····['device_5fmanagement_5focl_2ecpp_49',·['device_management_ocl.cpp',·['../device__management__ocl_8cpp.xhtml',·1,·'']]],65 ····['device_5fmanagement_5focl_2ecpp_49',·['device_management_ocl.cpp',·['../device__management__ocl_8cpp.xhtml',·1,·'']]],
66 ····['device_5fmanagement_5fsycl_2ecpp_50',·['device_management_sycl.cpp',·['../device__management__sycl_8cpp.xhtml',·1,·'']]],66 ····['device_5fmanagement_5fsycl_2ecpp_50',·['device_management_sycl.cpp',·['../device__management__sycl_8cpp.xhtml',·1,·'']]],
67 ····['device_5fmanagement_5fsycl_5fintel_5fdevice_5fids_2ecpp_51',·['device_management_sycl_intel_device_ids.cpp',·['../device__management__sycl__intel__device__ids_8cpp.xhtml',·1,·'']]],67 ····['device_5fmanagement_5fsycl_5fintel_5fdevice_5fids_2ecpp_51',·['device_management_sycl_intel_device_ids.cpp',·['../device__management__sycl__intel__device__ids_8cpp.xhtml',·1,·'']]],
68 ····['device_5fmanagement_5fsycl_5fintel_5fdevice_5fids_2eh_52',·['device_management_sycl_intel_device_ids.h',·['../device__management__sycl__intel__device__ids_8h.xhtml',·1,·'']]],68 ····['device_5fmanagement_5fsycl_5fintel_5fdevice_5fids_2eh_52',·['device_management_sycl_intel_device_ids.h',·['../device__management__sycl__intel__device__ids_8h.xhtml',·1,·'']]],
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40 ····['forceoutput_2eh_32',·['forceoutput.h',·['../forceoutput_8h.xhtml',·1,·'']]],40 ····['forceoutput_2eh_32',·['forceoutput.h',·['../forceoutput_8h.xhtml',·1,·'']]],
41 ····['forcetable_2eh_33',·['forcetable.h',·['../forcetable_8h.xhtml',·1,·'']]],41 ····['forcetable_2eh_33',·['forcetable.h',·['../forcetable_8h.xhtml',·1,·'']]],
42 ····['frameaverager_2ecpp_34',·['frameaverager.cpp',·['../frameaverager_8cpp.xhtml',·1,·'']]],42 ····['frameaverager_2ecpp_34',·['frameaverager.cpp',·['../frameaverager_8cpp.xhtml',·1,·'']]],
43 ····['frameaverager_2eh_35',·['frameaverager.h',·['../frameaverager_8h.xhtml',·1,·'']]],43 ····['frameaverager_2eh_35',·['frameaverager.h',·['../frameaverager_8h.xhtml',·1,·'']]],
44 ····['frameconverter_2eh_36',·['frameconverter.h',·['../frameconverter_8h.xhtml',·1,·'']]],44 ····['frameconverter_2eh_36',·['frameconverter.h',·['../frameconverter_8h.xhtml',·1,·'']]],
45 ····['frameconverterenums_2eh_37',·['frameconverterenums.h',·['../frameconverterenums_8h.xhtml',·1,·'']]],45 ····['frameconverterenums_2eh_37',·['frameconverterenums.h',·['../frameconverterenums_8h.xhtml',·1,·'']]],
46 ····['framelocaldata_2eh_38',·['framelocaldata.h',·['../framelocaldata_8h.xhtml',·1,·'']]],46 ····['framelocaldata_2eh_38',·['framelocaldata.h',·['../framelocaldata_8h.xhtml',·1,·'']]],
47 ····['freeenergy_2ecpp_39',·['freeenergy.cpp',·['../gromacs_2mdrunutility_2freeenergy_8cpp.xhtml',·1,·'(Global·Namespace)'],47 ····['freeenergy_2ecpp_39',·['freeenergy.cpp',·['../programs_2mdrun_2tests_2freeenergy_8cpp.xhtml',·1,·'(Global·Namespace)'],
48 ········['../programs_2mdrun_2tests_2freeenergy_8cpp.xhtml',·1,·'(Global·Namespace)']48 ········['../gromacs_2mdrunutility_2freeenergy_8cpp.xhtml',·1,·'(Global·Namespace)']
49 ····]],49 ····]],
50 ····['freeenergy_2eh_40',·['freeenergy.h',·['../freeenergy_8h.xhtml',·1,·'']]],50 ····['freeenergy_2eh_40',·['freeenergy.h',·['../freeenergy_8h.xhtml',·1,·'']]],
51 ····['freeenergydispatch_2eh_41',·['freeenergydispatch.h',·['../freeenergydispatch_8h.xhtml',·1,·'']]],51 ····['freeenergydispatch_2eh_41',·['freeenergydispatch.h',·['../freeenergydispatch_8h.xhtml',·1,·'']]],
52 ····['freeenergyparameters_2ecpp_42',·['freeenergyparameters.cpp',·['../tests_2freeenergyparameters_8cpp.xhtml',·1,·'(Global·Namespace)'],52 ····['freeenergyparameters_2ecpp_42',·['freeenergyparameters.cpp',·['../tests_2freeenergyparameters_8cpp.xhtml',·1,·'(Global·Namespace)'],
53 ········['../freeenergyparameters_8cpp.xhtml',·1,·'(Global·Namespace)']53 ········['../freeenergyparameters_8cpp.xhtml',·1,·'(Global·Namespace)']
54 ····]],54 ····]],
55 ····['freeenergyparameters_2eh_43',·['freeenergyparameters.h',·['../freeenergyparameters_8h.xhtml',·1,·'']]],55 ····['freeenergyparameters_2eh_43',·['freeenergyparameters.h',·['../freeenergyparameters_8h.xhtml',·1,·'']]],
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91 ····['gridset_2ecpp_87',·['gridset.cpp',·['../gridset_8cpp.xhtml',·1,·'']]],91 ····['gridset_2ecpp_87',·['gridset.cpp',·['../gridset_8cpp.xhtml',·1,·'']]],
92 ····['gridset_2eh_88',·['gridset.h',·['../gridset_8h.xhtml',·1,·'']]],92 ····['gridset_2eh_88',·['gridset.h',·['../gridset_8h.xhtml',·1,·'']]],
93 ····['gridsetdata_2eh_89',·['gridsetdata.h',·['../gridsetdata_8h.xhtml',·1,·'']]],93 ····['gridsetdata_2eh_89',·['gridsetdata.h',·['../gridsetdata_8h.xhtml',·1,·'']]],
94 ····['grompp_2ecpp_90',·['grompp.cpp',·['../programs_2mdrun_2tests_2grompp_8cpp.xhtml',·1,·'']]],94 ····['grompp_2ecpp_90',·['grompp.cpp',·['../programs_2mdrun_2tests_2grompp_8cpp.xhtml',·1,·'']]],
95 ····['grompp_5fdirectives_2ecpp_91',·['grompp_directives.cpp',·['../grompp__directives_8cpp.xhtml',·1,·'']]],95 ····['grompp_5fdirectives_2ecpp_91',·['grompp_directives.cpp',·['../grompp__directives_8cpp.xhtml',·1,·'']]],
96 ····['group_2ecpp_92',·['group.cpp',·['../group_8cpp.xhtml',·1,·'']]],96 ····['group_2ecpp_92',·['group.cpp',·['../group_8cpp.xhtml',·1,·'']]],
97 ····['groupcoord_2eh_93',·['groupcoord.h',·['../groupcoord_8h.xhtml',·1,·'']]],97 ····['groupcoord_2eh_93',·['groupcoord.h',·['../groupcoord_8h.xhtml',·1,·'']]],
98 ····['gyrate_2ecpp_94',·['gyrate.cpp',·['../modules_2gyrate_8cpp.xhtml',·1,·'(Global·Namespace)'],98 ····['gyrate_2ecpp_94',·['gyrate.cpp',·['../tests_2gyrate_8cpp.xhtml',·1,·'(Global·Namespace)'],
99 ········['../tests_2gyrate_8cpp.xhtml',·1,·'(Global·Namespace)']99 ········['../modules_2gyrate_8cpp.xhtml',·1,·'(Global·Namespace)']
100 ····]],100 ····]],
101 ····['gyrate_2eh_95',·['gyrate.h',·['../gyrate_8h.xhtml',·1,·'']]]101 ····['gyrate_2eh_95',·['gyrate.h',·['../gyrate_8h.xhtml',·1,·'']]]
102 ];102 ];
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Offset 9, 36 lines modifiedOffset 9, 36 lines modified
9 ····['hardwaretopology_2eh_5',·['hardwaretopology.h',·['../hardwaretopology_8h.xhtml',·1,·'']]],9 ····['hardwaretopology_2eh_5',·['hardwaretopology.h',·['../hardwaretopology_8h.xhtml',·1,·'']]],
10 ····['hashedmap_2ecpp_6',·['hashedmap.cpp',·['../hashedmap_8cpp.xhtml',·1,·'']]],10 ····['hashedmap_2ecpp_6',·['hashedmap.cpp',·['../hashedmap_8cpp.xhtml',·1,·'']]],
11 ····['hashedmap_2eh_7',·['hashedmap.h',·['../hashedmap_8h.xhtml',·1,·'']]],11 ····['hashedmap_2eh_7',·['hashedmap.h',·['../hashedmap_8h.xhtml',·1,·'']]],
12 ····['hbond_2ecpp_8',·['hbond.cpp',·['../tests_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)'],12 ····['hbond_2ecpp_8',·['hbond.cpp',·['../tests_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)'],
13 ········['../modules_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)']13 ········['../modules_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)']
14 ····]],14 ····]],
15 ····['hbond_2eh_9',·['hbond.h',·['../hbond_8h.xhtml',·1,·'']]],15 ····['hbond_2eh_9',·['hbond.h',·['../hbond_8h.xhtml',·1,·'']]],
16 ····['helpformat_2ecpp_10',·['helpformat.cpp',·['../tests_2helpformat_8cpp.xhtml',·1,·'(Global·Namespace)'],16 ····['helpformat_2ecpp_10',·['helpformat.cpp',·['../helpformat_8cpp.xhtml',·1,·'(Global·Namespace)'],
17 ········['../helpformat_8cpp.xhtml',·1,·'(Global·Namespace)']17 ········['../tests_2helpformat_8cpp.xhtml',·1,·'(Global·Namespace)']
18 ····]],18 ····]],
19 ····['helpformat_2eh_11',·['helpformat.h',·['../helpformat_8h.xhtml',·1,·'']]],19 ····['helpformat_2eh_11',·['helpformat.h',·['../helpformat_8h.xhtml',·1,·'']]],
20 ····['helpmanager_2ecpp_12',·['helpmanager.cpp',·['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],20 ····['helpmanager_2ecpp_12',·['helpmanager.cpp',·['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
21 ········['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']21 ········['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
22 ····]],22 ····]],
23 ····['helpmanager_2eh_13',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]],23 ····['helpmanager_2eh_13',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]],
24 ····['helptopic_2ecpp_14',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]],24 ····['helptopic_2ecpp_14',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]],
25 ····['helptopic_2eh_15',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],25 ····['helptopic_2eh_15',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],
26 ····['helpwritercontext_2ecpp_16',·['helpwritercontext.cpp',·['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],26 ····['helpwritercontext_2ecpp_16',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],
27 ········['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']27 ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']
28 ····]],28 ····]],
29 ····['helpwritercontext_2eh_17',·['helpwritercontext.h',·['../helpwritercontext_8h.xhtml',·1,·'']]],29 ····['helpwritercontext_2eh_17',·['helpwritercontext.h',·['../helpwritercontext_8h.xhtml',·1,·'']]],
30 ····['helpwriting_2ecpp_18',·['helpwriting.cpp',·['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],30 ····['helpwriting_2ecpp_18',·['helpwriting.cpp',·['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],
31 ········['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']31 ········['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['histogram_2ecpp_19',·['histogram.cpp',·['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'],33 ····['histogram_2ecpp_19',·['histogram.cpp',·['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'],
34 ········['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)']34 ········['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)']
35 ····]],35 ····]],
36 ····['histogram_2eh_20',·['histogram.h',·['../histogram_8h.xhtml',·1,·'']]],36 ····['histogram_2eh_20',·['histogram.h',·['../histogram_8h.xhtml',·1,·'']]],
37 ····['histogramsize_2ecpp_21',·['histogramsize.cpp',·['../histogramsize_8cpp.xhtml',·1,·'']]],37 ····['histogramsize_2ecpp_21',·['histogramsize.cpp',·['../histogramsize_8cpp.xhtml',·1,·'']]],
38 ····['histogramsize_2eh_22',·['histogramsize.h',·['../histogramsize_8h.xhtml',·1,·'']]],38 ····['histogramsize_2eh_22',·['histogramsize.h',·['../histogramsize_8h.xhtml',·1,·'']]],
39 ····['hostallocator_2ecpp_23',·['hostallocator.cpp',·['../tests_2hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],39 ····['hostallocator_2ecpp_23',·['hostallocator.cpp',·['../hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],
40 ········['../hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)']40 ········['../tests_2hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)']
41 ····]],41 ····]],
42 ····['hostallocator_2eh_24',·['hostallocator.h',·['../hostallocator_8h.xhtml',·1,·'']]],42 ····['hostallocator_2eh_24',·['hostallocator.h',·['../hostallocator_8h.xhtml',·1,·'']]],
43 ····['hsimd_5fdeclarations_2eh_25',·['hsimd_declarations.h',·['../hsimd__declarations_8h.xhtml',·1,·'']]]43 ····['hsimd_5fdeclarations_2eh_25',·['hsimd_declarations.h',·['../hsimd__declarations_8h.xhtml',·1,·'']]]
44 ];44 ];
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Offset 51, 32 lines modifiedOffset 51, 32 lines modified
51 ····['mock_5fhelptopic_2eh_39',·['mock_helptopic.h',·['../mock__helptopic_8h.xhtml',·1,·'']]],51 ····['mock_5fhelptopic_2eh_39',·['mock_helptopic.h',·['../mock__helptopic_8h.xhtml',·1,·'']]],
52 ····['mockhardwaretopology_2ecpp_40',·['mockhardwaretopology.cpp',·['../mockhardwaretopology_8cpp.xhtml',·1,·'']]],52 ····['mockhardwaretopology_2ecpp_40',·['mockhardwaretopology.cpp',·['../mockhardwaretopology_8cpp.xhtml',·1,·'']]],
53 ····['modularsimulator_2ecpp_41',·['modularsimulator.cpp',·['../modularsimulator_8cpp.xhtml',·1,·'']]],53 ····['modularsimulator_2ecpp_41',·['modularsimulator.cpp',·['../modularsimulator_8cpp.xhtml',·1,·'']]],
54 ····['modularsimulator_2eh_42',·['modularsimulator.h',·['../modularsimulator_8h.xhtml',·1,·'']]],54 ····['modularsimulator_2eh_42',·['modularsimulator.h',·['../modularsimulator_8h.xhtml',·1,·'']]],
55 ····['modularsimulatorinterfaces_2eh_43',·['modularsimulatorinterfaces.h',·['../modularsimulatorinterfaces_8h.xhtml',·1,·'']]],55 ····['modularsimulatorinterfaces_2eh_43',·['modularsimulatorinterfaces.h',·['../modularsimulatorinterfaces_8h.xhtml',·1,·'']]],
56 ····['modules_2ecpp_44',·['modules.cpp',·['../modules_8cpp.xhtml',·1,·'']]],56 ····['modules_2ecpp_44',·['modules.cpp',·['../modules_8cpp.xhtml',·1,·'']]],
57 ····['modules_2eh_45',·['modules.h',·['../modules_8h.xhtml',·1,·'']]],57 ····['modules_2eh_45',·['modules.h',·['../modules_8h.xhtml',·1,·'']]],
58 ····['moduletest_2ecpp_46',·['moduletest.cpp',·['../programs_2mdrun_2tests_2moduletest_8cpp.xhtml',·1,·'(Global·Namespace)'],58 ····['moduletest_2ecpp_46',·['moduletest.cpp',·['../gromacs_2trajectoryanalysis_2tests_2moduletest_8cpp.xhtml',·1,·'(Global·Namespace)'],
59 ········['../gromacs_2trajectoryanalysis_2tests_2moduletest_8cpp.xhtml',·1,·'(Global·Namespace)']59 ········['../programs_2mdrun_2tests_2moduletest_8cpp.xhtml',·1,·'(Global·Namespace)']
60 ····]],60 ····]],
61 ····['moduletest_2eh_47',·['moduletest.h',·['../programs_2mdrun_2tests_2moduletest_8h.xhtml',·1,·'(Global·Namespace)'],61 ····['moduletest_2eh_47',·['moduletest.h',·['../gromacs_2trajectoryanalysis_2tests_2moduletest_8h.xhtml',·1,·'(Global·Namespace)'],
62 ········['../gromacs_2trajectoryanalysis_2tests_2moduletest_8h.xhtml',·1,·'(Global·Namespace)']62 ········['../programs_2mdrun_2tests_2moduletest_8h.xhtml',·1,·'(Global·Namespace)']
63 ····]],63 ····]],
64 ····['mp11_2eh_48',·['mp11.h',·['../mp11_8h.xhtml',·1,·'']]],64 ····['mp11_2eh_48',·['mp11.h',·['../mp11_8h.xhtml',·1,·'']]],
65 ····['mpi_5fprinter_2eh_49',·['mpi_printer.h',·['../mpi__printer_8h.xhtml',·1,·'']]],65 ····['mpi_5fprinter_2eh_49',·['mpi_printer.h',·['../mpi__printer_8h.xhtml',·1,·'']]],
66 ····['mpitest_2ecpp_50',·['mpitest.cpp',·['../mpitest_8cpp.xhtml',·1,·'(Global·Namespace)'],66 ····['mpitest_2ecpp_50',·['mpitest.cpp',·['../mpitest_8cpp.xhtml',·1,·'(Global·Namespace)'],
67 ········['../tests_2mpitest_8cpp.xhtml',·1,·'(Global·Namespace)']67 ········['../tests_2mpitest_8cpp.xhtml',·1,·'(Global·Namespace)']
68 ····]],68 ····]],
69 ····['mpitest_2eh_51',·['mpitest.h',·['../mpitest_8h.xhtml',·1,·'']]],69 ····['mpitest_2eh_51',·['mpitest.h',·['../mpitest_8h.xhtml',·1,·'']]],
70 ····['mrcdensitymap_2ecpp_52',·['mrcdensitymap.cpp',·['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],70 ····['mrcdensitymap_2ecpp_52',·['mrcdensitymap.cpp',·['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],
71 ········['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']71 ········['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']
72 ····]],72 ····]],
73 ····['mrcdensitymap_2eh_53',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],73 ····['mrcdensitymap_2eh_53',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],
74 ····['mrcdensitymapheader_2ecpp_54',·['mrcdensitymapheader.cpp',·['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],74 ····['mrcdensitymapheader_2ecpp_54',·['mrcdensitymapheader.cpp',·['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],
75 ········['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)']75 ········['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)']
76 ····]],76 ····]],
77 ····['mrcdensitymapheader_2eh_55',·['mrcdensitymapheader.h',·['../mrcdensitymapheader_8h.xhtml',·1,·'']]],77 ····['mrcdensitymapheader_2eh_55',·['mrcdensitymapheader.h',·['../mrcdensitymapheader_8h.xhtml',·1,·'']]],
78 ····['mrcserializer_2ecpp_56',·['mrcserializer.cpp',·['../mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)'],78 ····['mrcserializer_2ecpp_56',·['mrcserializer.cpp',·['../mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)'],
79 ········['../tests_2mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)']79 ········['../tests_2mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)']
80 ····]],80 ····]],
81 ····['mrcserializer_2eh_57',·['mrcserializer.h',·['../mrcserializer_8h.xhtml',·1,·'']]],81 ····['mrcserializer_2eh_57',·['mrcserializer.h',·['../mrcserializer_8h.xhtml',·1,·'']]],
82 ····['msd_2ecpp_58',·['msd.cpp',·['../modules_2msd_8cpp.xhtml',·1,·'(Global·Namespace)'],82 ····['msd_2ecpp_58',·['msd.cpp',·['../modules_2msd_8cpp.xhtml',·1,·'(Global·Namespace)'],
7.21 KB
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Offset 1, 12 lines modifiedOffset 1, 12 lines modified
1 var·searchData·=·[1 var·searchData·=·[
2 ····['paddedvector_2ecpp_0',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]],2 ····['paddedvector_2ecpp_0',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]],
3 ····['paddedvector_2eh_1',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]],3 ····['paddedvector_2eh_1',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]],
4 ····['pairdist_2ecpp_2',·['pairdist.cpp',·['../modules_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)'],4 ····['pairdist_2ecpp_2',·['pairdist.cpp',·['../tests_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)'],
5 ········['../tests_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)']5 ········['../modules_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)']
6 ····]],6 ····]],
7 ····['pairdist_2eh_3',·['pairdist.h',·['../pairdist_8h.xhtml',·1,·'']]],7 ····['pairdist_2eh_3',·['pairdist.h',·['../pairdist_8h.xhtml',·1,·'']]],
8 ····['pairlist_5fsimd_5f2xmm_2eh_4',·['pairlist_simd_2xmm.h',·['../pairlist__simd__2xmm_8h.xhtml',·1,·'']]],8 ····['pairlist_5fsimd_5f2xmm_2eh_4',·['pairlist_simd_2xmm.h',·['../pairlist__simd__2xmm_8h.xhtml',·1,·'']]],
9 ····['pairlist_5fsimd_5f4xm_2eh_5',·['pairlist_simd_4xm.h',·['../pairlist__simd__4xm_8h.xhtml',·1,·'']]],9 ····['pairlist_5fsimd_5f4xm_2eh_5',·['pairlist_simd_4xm.h',·['../pairlist__simd__4xm_8h.xhtml',·1,·'']]],
10 ····['pairlist_5ftuning_2ecpp_6',·['pairlist_tuning.cpp',·['../pairlist__tuning_8cpp.xhtml',·1,·'']]],10 ····['pairlist_5ftuning_2ecpp_6',·['pairlist_tuning.cpp',·['../pairlist__tuning_8cpp.xhtml',·1,·'']]],
11 ····['pairlist_5ftuning_2eh_7',·['pairlist_tuning.h',·['../pairlist__tuning_8h.xhtml',·1,·'']]],11 ····['pairlist_5ftuning_2eh_7',·['pairlist_tuning.h',·['../pairlist__tuning_8h.xhtml',·1,·'']]],
12 ····['pairlistparams_2ecpp_8',·['pairlistparams.cpp',·['../pairlistparams_8cpp.xhtml',·1,·'']]],12 ····['pairlistparams_2ecpp_8',·['pairlistparams.cpp',·['../pairlistparams_8cpp.xhtml',·1,·'']]],
Offset 29, 20 lines modifiedOffset 29, 20 lines modified
29 ····['parrinellorahmanbarostat_2ecpp_23',·['parrinellorahmanbarostat.cpp',·['../parrinellorahmanbarostat_8cpp.xhtml',·1,·'']]],29 ····['parrinellorahmanbarostat_2ecpp_23',·['parrinellorahmanbarostat.cpp',·['../parrinellorahmanbarostat_8cpp.xhtml',·1,·'']]],
30 ····['parrinellorahmanbarostat_2eh_24',·['parrinellorahmanbarostat.h',·['../parrinellorahmanbarostat_8h.xhtml',·1,·'']]],30 ····['parrinellorahmanbarostat_2eh_24',·['parrinellorahmanbarostat.h',·['../parrinellorahmanbarostat_8h.xhtml',·1,·'']]],
31 ····['parser_5finternal_2eh_25',·['parser_internal.h',·['../parser__internal_8h.xhtml',·1,·'']]],31 ····['parser_5finternal_2eh_25',·['parser_internal.h',·['../parser__internal_8h.xhtml',·1,·'']]],
32 ····['parsetree_2ecpp_26',·['parsetree.cpp',·['../parsetree_8cpp.xhtml',·1,·'']]],32 ····['parsetree_2ecpp_26',·['parsetree.cpp',·['../parsetree_8cpp.xhtml',·1,·'']]],
33 ····['parsetree_2eh_27',·['parsetree.h',·['../parsetree_8h.xhtml',·1,·'']]],33 ····['parsetree_2eh_27',·['parsetree.h',·['../parsetree_8h.xhtml',·1,·'']]],
34 ····['partition_2ecpp_28',·['partition.cpp',·['../partition_8cpp.xhtml',·1,·'']]],34 ····['partition_2ecpp_28',·['partition.cpp',·['../partition_8cpp.xhtml',·1,·'']]],
35 ····['partition_2eh_29',·['partition.h',·['../partition_8h.xhtml',·1,·'']]],35 ····['partition_2eh_29',·['partition.h',·['../partition_8h.xhtml',·1,·'']]],
36 ····['path_2ecpp_30',·['path.cpp',·['../tests_2path_8cpp.xhtml',·1,·'(Global·Namespace)'],36 ····['path_2ecpp_30',·['path.cpp',·['../path_8cpp.xhtml',·1,·'(Global·Namespace)'],
37 ········['../path_8cpp.xhtml',·1,·'(Global·Namespace)']37 ········['../tests_2path_8cpp.xhtml',·1,·'(Global·Namespace)']
38 ····]],38 ····]],
39 ····['path_2eh_31',·['path.h',·['../path_8h.xhtml',·1,·'']]],39 ····['path_2eh_31',·['path.h',·['../path_8h.xhtml',·1,·'']]],
40 ····['pbc_2ecpp_32',·['pbc.cpp',·['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)'],40 ····['pbc_2ecpp_32',·['pbc.cpp',·['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)'],
41 ········['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)']41 ········['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)']
42 ····]],42 ····]],
43 ····['pbc_5faiuc_2eh_33',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]],43 ····['pbc_5faiuc_2eh_33',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]],
44 ····['pbc_5faiuc_5fsycl_2eh_34',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]],44 ····['pbc_5faiuc_5fsycl_2eh_34',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]],
45 ····['pbc_5fsimd_2ecpp_35',·['pbc_simd.cpp',·['../pbc__simd_8cpp.xhtml',·1,·'']]],45 ····['pbc_5fsimd_2ecpp_35',·['pbc_simd.cpp',·['../pbc__simd_8cpp.xhtml',·1,·'']]],
46 ····['pbc_5fsimd_2eh_36',·['pbc_simd.h',·['../pbc__simd_8h.xhtml',·1,·'']]],46 ····['pbc_5fsimd_2eh_36',·['pbc_simd.h',·['../pbc__simd_8h.xhtml',·1,·'']]],
47 ····['pbcenums_2ecpp_37',·['pbcenums.cpp',·['../tests_2pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)'],47 ····['pbcenums_2ecpp_37',·['pbcenums.cpp',·['../tests_2pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)'],
48 ········['../pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)']48 ········['../pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)']
Offset 59, 16 lines modifiedOffset 59, 16 lines modified
59 ····['pinnedmemorychecker_2ecpp_47',·['pinnedmemorychecker.cpp',·['../pinnedmemorychecker_8cpp.xhtml',·1,·'']]],59 ····['pinnedmemorychecker_2ecpp_47',·['pinnedmemorychecker.cpp',·['../pinnedmemorychecker_8cpp.xhtml',·1,·'']]],
60 ····['pleasecite_2eh_48',·['pleasecite.h',·['../pleasecite_8h.xhtml',·1,·'']]],60 ····['pleasecite_2eh_48',·['pleasecite.h',·['../pleasecite_8h.xhtml',·1,·'']]],
61 ····['plot_2ecpp_49',·['plot.cpp',·['../plot_8cpp.xhtml',·1,·'']]],61 ····['plot_2ecpp_49',·['plot.cpp',·['../plot_8cpp.xhtml',·1,·'']]],
62 ····['plot_2eh_50',·['plot.h',·['../plot_8h.xhtml',·1,·'']]],62 ····['plot_2eh_50',·['plot.h',·['../plot_8h.xhtml',·1,·'']]],
63 ····['pmalloc_2ecpp_51',·['pmalloc.cpp',·['../pmalloc_8cpp.xhtml',·1,·'']]],63 ····['pmalloc_2ecpp_51',·['pmalloc.cpp',·['../pmalloc_8cpp.xhtml',·1,·'']]],
64 ····['pmalloc_2eh_52',·['pmalloc.h',·['../pmalloc_8h.xhtml',·1,·'']]],64 ····['pmalloc_2eh_52',·['pmalloc.h',·['../pmalloc_8h.xhtml',·1,·'']]],
65 ····['pmalloc_5fsycl_2ecpp_53',·['pmalloc_sycl.cpp',·['../pmalloc__sycl_8cpp.xhtml',·1,·'']]],65 ····['pmalloc_5fsycl_2ecpp_53',·['pmalloc_sycl.cpp',·['../pmalloc__sycl_8cpp.xhtml',·1,·'']]],
66 ····['pme_2ecpp_54',·['pme.cpp',·['../pme_8cpp.xhtml',·1,·'(Global·Namespace)'],66 ····['pme_2ecpp_54',·['pme.cpp',·['../tests_2pme_8cpp.xhtml',·1,·'(Global·Namespace)'],
67 ········['../tests_2pme_8cpp.xhtml',·1,·'(Global·Namespace)']67 ········['../pme_8cpp.xhtml',·1,·'(Global·Namespace)']
68 ····]],68 ····]],
69 ····['pme_2eh_55',·['pme.h',·['../pme_8h.xhtml',·1,·'']]],69 ····['pme_2eh_55',·['pme.h',·['../pme_8h.xhtml',·1,·'']]],
70 ····['pme_5fcoordinate_5freceiver_5fgpu_2eh_56',·['pme_coordinate_receiver_gpu.h',·['../pme__coordinate__receiver__gpu_8h.xhtml',·1,·'']]],70 ····['pme_5fcoordinate_5freceiver_5fgpu_2eh_56',·['pme_coordinate_receiver_gpu.h',·['../pme__coordinate__receiver__gpu_8h.xhtml',·1,·'']]],
71 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2ecpp_57',·['pme_coordinate_receiver_gpu_impl.cpp',·['../pme__coordinate__receiver__gpu__impl_8cpp.xhtml',·1,·'']]],71 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2ecpp_57',·['pme_coordinate_receiver_gpu_impl.cpp',·['../pme__coordinate__receiver__gpu__impl_8cpp.xhtml',·1,·'']]],
72 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2eh_58',·['pme_coordinate_receiver_gpu_impl.h',·['../pme__coordinate__receiver__gpu__impl_8h.xhtml',·1,·'']]],72 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2eh_58',·['pme_coordinate_receiver_gpu_impl.h',·['../pme__coordinate__receiver__gpu__impl_8h.xhtml',·1,·'']]],
73 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_5fgpu_2ecpp_59',·['pme_coordinate_receiver_gpu_impl_gpu.cpp',·['../pme__coordinate__receiver__gpu__impl__gpu_8cpp.xhtml',·1,·'']]],73 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_5fgpu_2ecpp_59',·['pme_coordinate_receiver_gpu_impl_gpu.cpp',·['../pme__coordinate__receiver__gpu__impl__gpu_8cpp.xhtml',·1,·'']]],
74 ····['pme_5fforce_5fsender_5fgpu_2eh_60',·['pme_force_sender_gpu.h',·['../pme__force__sender__gpu_8h.xhtml',·1,·'']]],74 ····['pme_5fforce_5fsender_5fgpu_2eh_60',·['pme_force_sender_gpu.h',·['../pme__force__sender__gpu_8h.xhtml',·1,·'']]],
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136 ····['polynomials_2eh_122',·['polynomials.h',·['../polynomials_8h.xhtml',·1,·'']]],136 ····['polynomials_2eh_122',·['polynomials.h',·['../polynomials_8h.xhtml',·1,·'']]],
137 ····['poscalc_2ecpp_123',·['poscalc.cpp',·['../poscalc_8cpp.xhtml',·1,·'(Global·Namespace)'],137 ····['poscalc_2ecpp_123',·['poscalc.cpp',·['../poscalc_8cpp.xhtml',·1,·'(Global·Namespace)'],
138 ········['../tests_2poscalc_8cpp.xhtml',·1,·'(Global·Namespace)']138 ········['../tests_2poscalc_8cpp.xhtml',·1,·'(Global·Namespace)']
139 ····]],139 ····]],
140 ····['poscalc_2eh_124',·['poscalc.h',·['../poscalc_8h.xhtml',·1,·'']]],140 ····['poscalc_2eh_124',·['poscalc.h',·['../poscalc_8h.xhtml',·1,·'']]],
141 ····['position_2ecpp_125',·['position.cpp',·['../position_8cpp.xhtml',·1,·'']]],141 ····['position_2ecpp_125',·['position.cpp',·['../position_8cpp.xhtml',·1,·'']]],
142 ····['position_2eh_126',·['position.h',·['../position_8h.xhtml',·1,·'']]],142 ····['position_2eh_126',·['position.h',·['../position_8h.xhtml',·1,·'']]],
143 ····['position_5frestraints_2ecpp_127',·['position_restraints.cpp',·['../tests_2position__restraints_8cpp.xhtml',·1,·'(Global·Namespace)'],143 ····['position_5frestraints_2ecpp_127',·['position_restraints.cpp',·['../position__restraints_8cpp.xhtml',·1,·'(Global·Namespace)'],
144 ········['../position__restraints_8cpp.xhtml',·1,·'(Global·Namespace)']144 ········['../tests_2position__restraints_8cpp.xhtml',·1,·'(Global·Namespace)']
145 ····]],145 ····]],
146 ····['position_5frestraints_2eh_128',·['position_restraints.h',·['../position__restraints_8h.xhtml',·1,·'']]],146 ····['position_5frestraints_2eh_128',·['position_restraints.h',·['../position__restraints_8h.xhtml',·1,·'']]],
147 ····['printtime_2eh_129',·['printtime.h',·['../printtime_8h.xhtml',·1,·'']]],147 ····['printtime_2eh_129',·['printtime.h',·['../printtime_8h.xhtml',·1,·'']]],
148 ····['programcontext_2ecpp_130',·['programcontext.cpp',·['../programcontext_8cpp.xhtml',·1,·'']]],148 ····['programcontext_2ecpp_130',·['programcontext.cpp',·['../programcontext_8cpp.xhtml',·1,·'']]],
149 ····['programcontext_2eh_131',·['programcontext.h',·['../programcontext_8h.xhtml',·1,·'']]],149 ····['programcontext_2eh_131',·['programcontext.h',·['../programcontext_8h.xhtml',·1,·'']]],
150 ····['propagator_2ecpp_132',·['propagator.cpp',·['../propagator_8cpp.xhtml',·1,·'']]],150 ····['propagator_2ecpp_132',·['propagator.cpp',·['../propagator_8cpp.xhtml',·1,·'']]],
151 ····['propagator_2eh_133',·['propagator.h',·['../propagator_8h.xhtml',·1,·'']]],151 ····['propagator_2eh_133',·['propagator.h',·['../propagator_8h.xhtml',·1,·'']]],
152 ····['pull_2ecpp_134',·['pull.cpp',·['../programs_2mdrun_2tests_2pull_8cpp.xhtml',·1,·'(Global·Namespace)'],152 ····['pull_2ecpp_134',·['pull.cpp',·['../gromacs_2pulling_2tests_2pull_8cpp.xhtml',·1,·'(Global·Namespace)'],
153 ········['../gromacs_2pulling_2tests_2pull_8cpp.xhtml',·1,·'(Global·Namespace)']153 ········['../programs_2mdrun_2tests_2pull_8cpp.xhtml',·1,·'(Global·Namespace)']
154 ····]],154 ····]],
155 ····['pull_2eh_135',·['pull.h',·['../pull_8h.xhtml',·1,·'']]],155 ····['pull_2eh_135',·['pull.h',·['../pull_8h.xhtml',·1,·'']]],
156 ····['pull_5finternal_2eh_136',·['pull_internal.h',·['../pull__internal_8h.xhtml',·1,·'']]],156 ····['pull_5finternal_2eh_136',·['pull_internal.h',·['../pull__internal_8h.xhtml',·1,·'']]],
157 ····['pull_5fparams_2eh_137',·['pull_params.h',·['../pull__params_8h.xhtml',·1,·'']]],157 ····['pull_5fparams_2eh_137',·['pull_params.h',·['../pull__params_8h.xhtml',·1,·'']]],
158 ····['pull_5frotation_2ecpp_138',·['pull_rotation.cpp',·['../programs_2mdrun_2tests_2pull__rotation_8cpp.xhtml',·1,·'']]],158 ····['pull_5frotation_2ecpp_138',·['pull_rotation.cpp',·['../programs_2mdrun_2tests_2pull__rotation_8cpp.xhtml',·1,·'']]],
159 ····['pull_5frotation_2eh_139',·['pull_rotation.h',·['../pull__rotation_8h.xhtml',·1,·'']]],159 ····['pull_5frotation_2eh_139',·['pull_rotation.h',·['../pull__rotation_8h.xhtml',·1,·'']]],
160 ····['pullcoordexpressionparser_2eh_140',·['pullcoordexpressionparser.h',·['../pullcoordexpressionparser_8h.xhtml',·1,·'']]],160 ····['pullcoordexpressionparser_2eh_140',·['pullcoordexpressionparser.h',·['../pullcoordexpressionparser_8h.xhtml',·1,·'']]],
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3 ········['../qmmm_8cpp.xhtml',·1,·'(Global·Namespace)']3 ········['../qmmm_8cpp.xhtml',·1,·'(Global·Namespace)']
4 ····]],4 ····]],
5 ····['qmmm_2eh_1',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],5 ····['qmmm_2eh_1',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],
6 ····['qmmmforceprovider_2ecpp_2',·['qmmmforceprovider.cpp',·['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],6 ····['qmmmforceprovider_2ecpp_2',·['qmmmforceprovider.cpp',·['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
7 ········['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']7 ········['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
8 ····]],8 ····]],
9 ····['qmmmforceprovider_2eh_3',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],9 ····['qmmmforceprovider_2eh_3',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],
10 ····['qmmmforceprovider_5fstub_2ecpp_4',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],10 ····['qmmmforceprovider_5fstub_2ecpp_4',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],
11 ····['qmmminputgenerator_2ecpp_5',·['qmmminputgenerator.cpp',·['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'],11 ····['qmmminputgenerator_2ecpp_5',·['qmmminputgenerator.cpp',·['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'],
12 ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']12 ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']
13 ····]],13 ····]],
14 ····['qmmminputgenerator_2eh_6',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],14 ····['qmmminputgenerator_2eh_6',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],
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475 <dd><p·class="startdd"><a·class="anchor"·id="_todo000273"></a>Eventually·t_trxframe·should·be·replaced·by·a·class·such·as·this.·Currently·we·need·to·introduce·BoxMatrix·so·that·we·can·have·a·normal·C++·getter·that·returns·the·contents·of·a·box·matrix,·since·you·cannot·use·a·real[DIM][DIM]·as·a·function·return·type.</p>475 <dd><p·class="startdd"><a·class="anchor"·id="_todo000273"></a>Eventually·t_trxframe·should·be·replaced·by·a·class·such·as·this.·Currently·we·need·to·introduce·BoxMatrix·so·that·we·can·have·a·normal·C++·getter·that·returns·the·contents·of·a·box·matrix,·since·you·cannot·use·a·real[DIM][DIM]·as·a·function·return·type.</p>
476 <p·class="enddd"><a·class="anchor"·id="_todo000274"></a>Consider·a·std::optional·work-alike·type·for·expressing·that·a·field·may·or·may·not·have·content.··</p>476 <p·class="enddd"><a·class="anchor"·id="_todo000274"></a>Consider·a·std::optional·work-alike·type·for·expressing·that·a·field·may·or·may·not·have·content.··</p>
477 </dd>477 </dd>
478 <dt>Struct·<a·class="el"·href="structgmx__hw__opt__t.xhtml">gmx_hw_opt_t</a>··</dt>478 <dt>Struct·<a·class="el"·href="structgmx__hw__opt__t.xhtml">gmx_hw_opt_t</a>··</dt>
479 <dd><a·class="anchor"·id="_todo000067"></a>During·mdrunner(),·if·the·user·has·left·any·of·these·values·at·their·defaults·(which·tends·to·mean·"choose·automatically"),·then·those·values·are·over-written·with·the·result·of·such·automation.·This·creates·problems·for·the·subsequent·code·in·knowing·what·was·done,·why,·and·reporting·correctly·to·the·user.·Find·a·way·to·improve·this.··</dd>479 <dd><a·class="anchor"·id="_todo000067"></a>During·mdrunner(),·if·the·user·has·left·any·of·these·values·at·their·defaults·(which·tends·to·mean·"choose·automatically"),·then·those·values·are·over-written·with·the·result·of·such·automation.·This·creates·problems·for·the·subsequent·code·in·knowing·what·was·done,·why,·and·reporting·correctly·to·the·user.·Find·a·way·to·improve·this.··</dd>
480 <dt>Struct·<a·class="el"·href="structgmx__multisim__t.xhtml">gmx_multisim_t</a>··</dt>480 <dt>Struct·<a·class="el"·href="structgmx__multisim__t.xhtml">gmx_multisim_t</a>··</dt>
481 <dd><a·class="anchor"·id="_todo000154"></a>Change·this·to·class··</dd>481 <dd><a·class="anchor"·id="_todo000154"></a>Change·this·to·class··</dd>
482 <dt>Member·<a·class="el"·href="pme_8h.xhtml#adc07e6be8d5225d0d192c27ccc474124">gmx_pme_init</a>··(const·t_commrec·*cr,·const·<a·class="el"·href="structNumPmeDomains.xhtml"·title="Struct·for·passing·around·the·number·of·PME·domains.">NumPmeDomains</a>·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·<a·class="el"·href="structPmeGpu.xhtml"·title="The·main·PME·GPU·host·structure,·included·in·the·PME·CPU·structure·by·pointer.">PmeGpu</a>·*pmeGpu,·const·DeviceContext·*deviceContext,·const·<a·class="el"·href="classDeviceStream.xhtml"·title="Declaration·of·platform-agnostic·device·stream/queue.">DeviceStream</a>·*deviceStream,·const·<a·class="el"·href="classPmeGpuProgram.xhtml"·title="Stores·PME·data·derived·from·the·GPU·context·or·devices.">PmeGpuProgram</a>·*pmeGpuProgram,·const·<a·class="el"·href="classgmx_1_1MDLogger.xhtml"·title="Declares·a·logging·interface.">gmx::MDLogger</a>·&amp;mdlog)</dt>482 <dt>Member·<a·class="el"·href="pme_8cpp.xhtml#adc07e6be8d5225d0d192c27ccc474124">gmx_pme_init</a>··(const·t_commrec·*cr,·const·<a·class="el"·href="structNumPmeDomains.xhtml"·title="Struct·for·passing·around·the·number·of·PME·domains.">NumPmeDomains</a>·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·<a·class="el"·href="structPmeGpu.xhtml"·title="The·main·PME·GPU·host·structure,·included·in·the·PME·CPU·structure·by·pointer.">PmeGpu</a>·*pmeGpu,·const·DeviceContext·*deviceContext,·const·<a·class="el"·href="classDeviceStream.xhtml"·title="Declaration·of·platform-agnostic·device·stream/queue.">DeviceStream</a>·*deviceStream,·const·<a·class="el"·href="classPmeGpuProgram.xhtml"·title="Stores·PME·data·derived·from·the·GPU·context·or·devices.">PmeGpuProgram</a>·*pmeGpuProgram,·const·<a·class="el"·href="classgmx_1_1MDLogger.xhtml"·title="Declares·a·logging·interface.">gmx::MDLogger</a>·&amp;mdlog)</dt>
483 <dd><a·class="anchor"·id="_todo000026"></a>We·should·evolve·something·like·a·<code>GpuManager</code>·that·holds·<code>DeviceInformation*</code>·and·<code>PmeGpuProgram*</code>·and·perhaps·other·related·things·whose·lifetime·can/should·exceed·that·of·a·task·(or·perhaps·task·manager).·See·Issue·#2522.··</dd>483 <dd><a·class="anchor"·id="_todo000026"></a>We·should·evolve·something·like·a·<code>GpuManager</code>·that·holds·<code>DeviceInformation*</code>·and·<code>PmeGpuProgram*</code>·and·perhaps·other·related·things·whose·lifetime·can/should·exceed·that·of·a·task·(or·perhaps·task·manager).·See·Issue·#2522.··</dd>
484 <dt>Member·<a·class="el"·href="group__module__utility.xhtml#ga33e34477bae2bbb86c4d9af1823e3fd0">GMX_UNUSED_VALUE</a>··(value)</dt>484 <dt>Member·<a·class="el"·href="group__module__utility.xhtml#ga33e34477bae2bbb86c4d9af1823e3fd0">GMX_UNUSED_VALUE</a>··(value)</dt>
485 <dd><a·class="anchor"·id="_todo000280"></a>Deprecated·-·use·gmx_unused··</dd>485 <dd><a·class="anchor"·id="_todo000280"></a>Deprecated·-·use·gmx_unused··</dd>
486 <dt>File·<a·class="el"·href="programs_2mdrun_2tests_2grompp_8cpp.xhtml">grompp.cpp</a>··</dt>486 <dt>File·<a·class="el"·href="programs_2mdrun_2tests_2grompp_8cpp.xhtml">grompp.cpp</a>··</dt>
487 <dd><a·class="anchor"·id="_todo000236"></a>Refactor·SimulationRunner·to·split·off·SimulationPreparer,·so·that·integration·tests·of·grompp·can·stand·apart·from·tests·of·mdrun.·</dd>487 <dd><a·class="anchor"·id="_todo000236"></a>Refactor·SimulationRunner·to·split·off·SimulationPreparer,·so·that·integration·tests·of·grompp·can·stand·apart·from·tests·of·mdrun.·</dd>
488 <dt>File·<a·class="el"·href="haloexchange__mpi_8cpp.xhtml">haloexchange_mpi.cpp</a>··</dt>488 <dt>File·<a·class="el"·href="haloexchange__mpi_8cpp.xhtml">haloexchange_mpi.cpp</a>··</dt>
489 <dd><a·class="anchor"·id="_todo000022"></a>Add·3D·case·</dd>489 <dd><a·class="anchor"·id="_todo000022"></a>Add·3D·case·</dd>
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563 <dd><a·class="anchor"·id="_todo000034"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·</dd>563 <dd><a·class="anchor"·id="_todo000034"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·</dd>
564 <dt>File·<a·class="el"·href="pme__gpu__staging_8h.xhtml">pme_gpu_staging.h</a>··</dt>564 <dt>File·<a·class="el"·href="pme__gpu__staging_8h.xhtml">pme_gpu_staging.h</a>··</dt>
565 <dd><a·class="anchor"·id="_todo000035"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>565 <dd><a·class="anchor"·id="_todo000035"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>
566 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9faddde52f5a636410141f52cc95d3e1">pme_gpu_task_enabled</a>··(const·gmx_pme_t·*pme)</dt>566 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9faddde52f5a636410141f52cc95d3e1">pme_gpu_task_enabled</a>··(const·gmx_pme_t·*pme)</dt>
567 <dd><a·class="anchor"·id="_todo000028"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·hardware·assignment·manager.·For·now,·it·is·synonymous·with·the·active·PME·codepath·(in·the·absence·of·dynamic·switching).·</dd>567 <dd><a·class="anchor"·id="_todo000028"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·hardware·assignment·manager.·For·now,·it·is·synonymous·with·the·active·PME·codepath·(in·the·absence·of·dynamic·switching).·</dd>
568 <dt>File·<a·class="el"·href="pme__gpu__types__host_8h.xhtml">pme_gpu_types_host.h</a>··</dt>568 <dt>File·<a·class="el"·href="pme__gpu__types__host_8h.xhtml">pme_gpu_types_host.h</a>··</dt>
569 <dd><a·class="anchor"·id="_todo000036"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>569 <dd><a·class="anchor"·id="_todo000036"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>
570 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9cfbe9fa691aabaf1a9e10fa06858c96">pme_run_mode</a>··(const·gmx_pme_t·*pme)</dt>570 <dt>Member·<a·class="el"·href="pme_8cpp.xhtml#a9cfbe9fa691aabaf1a9e10fa06858c96">pme_run_mode</a>··(const·gmx_pme_t·*pme)</dt>
571 <dd><a·class="anchor"·id="_todo000027"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.·</dd>571 <dd><a·class="anchor"·id="_todo000027"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.·</dd>
572 <dt>Member·<a·class="el"·href="structPmeGpu.xhtml#a592a545094c1ba0847e5e5223c981cc9">PmeGpu::kernelParams</a>··</dt>572 <dt>Member·<a·class="el"·href="structPmeGpu.xhtml#a592a545094c1ba0847e5e5223c981cc9">PmeGpu::kernelParams</a>··</dt>
573 <dd><a·class="anchor"·id="_todo000038"></a>Test·whether·this·should·be·copied·to·the·constant·GPU·memory·once·for·each·computation·(or·even·less·often·with·no·box·updates)·instead·of·being·an·argument.··</dd>573 <dd><a·class="anchor"·id="_todo000038"></a>Test·whether·this·should·be·copied·to·the·constant·GPU·memory·once·for·each·computation·(or·even·less·often·with·no·box·updates)·instead·of·being·an·argument.··</dd>
574 <dt>Struct·<a·class="el"·href="structPmeGpuProgramImpl.xhtml">PmeGpuProgramImpl</a>··</dt>574 <dt>Struct·<a·class="el"·href="structPmeGpuProgramImpl.xhtml">PmeGpuProgramImpl</a>··</dt>
575 <dd><a·class="anchor"·id="_todo000033"></a>In·future·if·we·would·need·to·react·to·either·user·input·or·auto-tuning·to·compile·different·kernels,·then·we·might·wish·to·revisit·the·number·of·kernels·we·pre-compile,·and/or·the·management·of·their·lifetime.·</dd>575 <dd><a·class="anchor"·id="_todo000033"></a>In·future·if·we·would·need·to·react·to·either·user·input·or·auto-tuning·to·compile·different·kernels,·then·we·might·wish·to·revisit·the·number·of·kernels·we·pre-compile,·and/or·the·management·of·their·lifetime.·</dd>
576 <dt>Member·<a·class="el"·href="pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791">PmeRunMode</a>··</dt>576 <dt>Member·<a·class="el"·href="pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791">PmeRunMode</a>··</dt>
577 <dd><a·class="anchor"·id="_todo000025"></a>:·make·this·enum·class·with·gmx_pme_t·C++·refactoring··</dd>577 <dd><a·class="anchor"·id="_todo000025"></a>:·make·this·enum·class·with·gmx_pme_t·C++·refactoring··</dd>
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549 ····['simd_20preprocessor_20macros_352',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]],549 ····['simd_20preprocessor_20macros_352',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]],
550 ····['simd_2eh_353',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]],550 ····['simd_2eh_353',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]],
551 ····['simd4_20implementation_354',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]],551 ····['simd4_20implementation_354',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]],
552 ····['simd4bool_355',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]],552 ····['simd4bool_355',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]],
553 ····['simd4dbool_356',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()'],553 ····['simd4dbool_356',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()'],
554 ········['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool']554 ········['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool']
555 ····]],555 ····]],
 556 ····['simd4double_357',·['simd4double',·['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double'],
556 ····['simd4double_357',·['simd4double',·['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()'],557 ········['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()']
557 ········['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double'] 
558 ····]],558 ····]],
559 ····['simd4fbool_358',·['simd4fbool',·['../classgmx_1_1Simd4FBool.xhtml#ad64754cbb774d9cab1ed08c49a6e28bc',·1,·'gmx::Simd4FBool::Simd4FBool()'],559 ····['simd4fbool_358',·['simd4fbool',·['../classgmx_1_1Simd4FBool.xhtml#ad64754cbb774d9cab1ed08c49a6e28bc',·1,·'gmx::Simd4FBool::Simd4FBool()'],
560 ········['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool']560 ········['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool']
561 ····]],561 ····]],
562 ····['simd4float_359',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'],562 ····['simd4float_359',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'],
563 ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float']563 ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float']
564 ····]],564 ····]],
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Offset 24, 26 lines modifiedOffset 24, 26 lines modified
24 ····['unitcellistriclinic_16',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],24 ····['unitcellistriclinic_16',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],
25 ····['unitcelltype_17',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],25 ····['unitcelltype_17',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
26 ····['unitcelltypenames_18',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],26 ····['unitcelltypenames_18',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
27 ····['unitvector_19',·['unitvector',·['../namespacegmx.xhtml#a5bc71ede59923e4d25b11a995139970a',·1,·'gmx::unitVector()'],27 ····['unitvector_19',·['unitvector',·['../namespacegmx.xhtml#a5bc71ede59923e4d25b11a995139970a',·1,·'gmx::unitVector()'],
28 ········['../classgmx_1_1BasicVector.xhtml#a4e7218ba6cbb3bc735e31a43597ec7a9',·1,·'gmx::BasicVector::unitVector()']28 ········['../classgmx_1_1BasicVector.xhtml#a4e7218ba6cbb3bc735e31a43597ec7a9',·1,·'gmx::BasicVector::unitVector()']
29 ····]],29 ····]],
30 ····['unity_20',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],30 ····['unity_20',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],
31 ····['unknown_21',·['unknown',·['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown'], 
32 ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h'],31 ····['unknown_21',·['unknown',·['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h'],
 32 ········['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown'],
33 ········['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown']33 ········['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown']
34 ····]],34 ····]],
35 ····['unpackrecvbufkernel_22',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],35 ····['unpackrecvbufkernel_22',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],
36 ····['unpaddedarrayref_23',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],36 ····['unpaddedarrayref_23',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],
37 ····['unpaddedconstarrayref_24',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],37 ····['unpaddedconstarrayref_24',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],
38 ····['unset_25',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],38 ····['unset_25',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],
39 ····['unsignedchartostring_26',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],39 ····['unsignedchartostring_26',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],
40 ····['update_27',·['update',·['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'],40 ····['update_27',·['update',·['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'],
41 ········['../classgmx_1_1Update.xhtml',·1,·'gmx::Update'], 
42 ········['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()']41 ········['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()'],
 42 ········['../classgmx_1_1Update.xhtml',·1,·'gmx::Update']
43 ····]],43 ····]],
44 ····['update_5fconstrain_5fgpu_2eh_28',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]],44 ····['update_5fconstrain_5fgpu_2eh_28',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]],
45 ····['update_5fcoords_29',·['update_coords',·['../classgmx_1_1Update.xhtml#a07bb5e84363cbcb95a10bc97647526e9',·1,·'gmx::Update']]],45 ····['update_5fcoords_29',·['update_coords',·['../classgmx_1_1Update.xhtml#a07bb5e84363cbcb95a10bc97647526e9',·1,·'gmx::Update']]],
46 ····['update_5fdisres_5fhistory_30',·['update_disres_history',·['../disre_8h.xhtml#a80a6326aadca6d0b6f6f4753e63648e7',·1,·'disre.cpp']]],46 ····['update_5fdisres_5fhistory_30',·['update_disres_history',·['../disre_8h.xhtml#a80a6326aadca6d0b6f6f4753e63648e7',·1,·'disre.cpp']]],
47 ····['update_5ffor_5fconstraint_5fvirial_31',·['update_for_constraint_virial',·['../classgmx_1_1Update.xhtml#acbd679269aa6945d6922c029770e8a84',·1,·'gmx::Update']]],47 ····['update_5ffor_5fconstraint_5fvirial_31',·['update_for_constraint_virial',·['../classgmx_1_1Update.xhtml#acbd679269aa6945d6922c029770e8a84',·1,·'gmx::Update']]],
48 ····['update_5fsd_5fsecond_5fhalf_32',·['update_sd_second_half',·['../classgmx_1_1Update.xhtml#ab0206e61c30553bd8aa268891c466509',·1,·'gmx::Update']]],48 ····['update_5fsd_5fsecond_5fhalf_32',·['update_sd_second_half',·['../classgmx_1_1Update.xhtml#ab0206e61c30553bd8aa268891c466509',·1,·'gmx::Update']]],
49 ····['update_5ftemperature_5fconstants_33',·['update_temperature_constants',·['../classgmx_1_1Update.xhtml#afa5d8919006df7093a2224fbc2f9fd4c',·1,·'gmx::Update']]],49 ····['update_5ftemperature_5fconstants_33',·['update_temperature_constants',·['../classgmx_1_1Update.xhtml#afa5d8919006df7093a2224fbc2f9fd4c',·1,·'gmx::Update']]],
Offset 54, 17 lines modifiedOffset 54, 17 lines modified
54 ····['updatechanged_38',·['UpdateChanged',·['../group__module__testutils.xhtml#gga973016f1f714be0d0eb5599877dcfee8afec701370fbe10a404604cc78512c8ac',·1,·'gmx::test']]],54 ····['updatechanged_38',·['UpdateChanged',·['../group__module__testutils.xhtml#gga973016f1f714be0d0eb5599877dcfee8afec701370fbe10a404604cc78512c8ac',·1,·'gmx::test']]],
55 ····['updateconstraints_39',·['UpdateConstraints',·['../namespacegmx.xhtml#a73202d646d57bcc963d8afd5a16015f0ab0634f71dbc527342668f2a63f1b3510',·1,·'gmx']]],55 ····['updateconstraints_39',·['UpdateConstraints',·['../namespacegmx.xhtml#a73202d646d57bcc963d8afd5a16015f0ab0634f71dbc527342668f2a63f1b3510',·1,·'gmx']]],
56 ····['updatecoordinates_40',·['UpdateCoordinates',·['../namespacegmx.xhtml#a73202d646d57bcc963d8afd5a16015f0a23714d9a49cc46ca81ad32670bde8b5e',·1,·'gmx']]],56 ····['updatecoordinates_40',·['UpdateCoordinates',·['../namespacegmx.xhtml#a73202d646d57bcc963d8afd5a16015f0a23714d9a49cc46ca81ad32670bde8b5e',·1,·'gmx']]],
57 ····['updatecorrelationgridhistory_41',·['updateCorrelationGridHistory',·['../namespacegmx.xhtml#a25892b094f85a4d534ed625143b489e2',·1,·'gmx']]],57 ····['updatecorrelationgridhistory_41',·['updateCorrelationGridHistory',·['../namespacegmx.xhtml#a25892b094f85a4d534ed625143b489e2',·1,·'gmx']]],
58 ····['updateforatompbcjumps_42',·['updateForAtomPbcJumps',·['../classgmx_1_1WholeMoleculeTransform.xhtml#ac2f8cb9aec06b08634aeafdf32eec96e',·1,·'gmx::WholeMoleculeTransform']]],58 ····['updateforatompbcjumps_42',·['updateForAtomPbcJumps',·['../classgmx_1_1WholeMoleculeTransform.xhtml#ac2f8cb9aec06b08634aeafdf32eec96e',·1,·'gmx::WholeMoleculeTransform']]],
59 ····['updatefromcommandline_43',·['updateFromCommandLine',·['../classgmx_1_1LegacyMdrunOptions.xhtml#a0b0230f493d20c663ed23e838dab6692',·1,·'gmx::LegacyMdrunOptions']]],59 ····['updatefromcommandline_43',·['updateFromCommandLine',·['../classgmx_1_1LegacyMdrunOptions.xhtml#a0b0230f493d20c663ed23e838dab6692',·1,·'gmx::LegacyMdrunOptions']]],
60 ····['updateglobalstate_44',·['updateGlobalState',·['../namespacegmx.xhtml#a109fb025f86dc445f7b53afb3f9af2b3',·1,·'gmx']]],60 ····['updateglobalstate_44',·['updateGlobalState',·['../namespacegmx.xhtml#a109fb025f86dc445f7b53afb3f9af2b3',·1,·'gmx']]],
61 ····['updategroups_45',·['updategroups',·['../classgmx_1_1UpdateGroups.xhtml',·1,·'gmx::UpdateGroups'], 
62 ········['../classgmx_1_1UpdateGroups.xhtml#ae953f890b3234f0a98247d77201f2c5e',·1,·'gmx::UpdateGroups::UpdateGroups(std::vector&lt;·RangePartitioning·&gt;·&amp;&amp;updateGroupingPerMoleculeType,·real·maxUpdateGroupRadius)'],61 ····['updategroups_45',·['updategroups',·['../classgmx_1_1UpdateGroups.xhtml#ae953f890b3234f0a98247d77201f2c5e',·1,·'gmx::UpdateGroups::UpdateGroups(std::vector&lt;·RangePartitioning·&gt;·&amp;&amp;updateGroupingPerMoleculeType,·real·maxUpdateGroupRadius)'],
63 ········['../classgmx_1_1UpdateGroups.xhtml#aec6aff66b1a4e1d52f8c164e99579b85',·1,·'gmx::UpdateGroups::UpdateGroups()=default']62 ········['../classgmx_1_1UpdateGroups.xhtml#aec6aff66b1a4e1d52f8c164e99579b85',·1,·'gmx::UpdateGroups::UpdateGroups()=default'],
 63 ········['../classgmx_1_1UpdateGroups.xhtml',·1,·'gmx::UpdateGroups']
64 ····]],64 ····]],
65 ····['updategroups_2eh_46',·['updategroups.h',·['../updategroups_8h.xhtml',·1,·'']]],65 ····['updategroups_2eh_46',·['updategroups.h',·['../updategroups_8h.xhtml',·1,·'']]],
66 ····['updategroupscog_47',·['updategroupscog',·['../classgmx_1_1UpdateGroupsCog.xhtml#a2d5ea1c35c8fa0fa09a22a4924306974',·1,·'gmx::UpdateGroupsCog::UpdateGroupsCog()'],66 ····['updategroupscog_47',·['updategroupscog',·['../classgmx_1_1UpdateGroupsCog.xhtml#a2d5ea1c35c8fa0fa09a22a4924306974',·1,·'gmx::UpdateGroupsCog::UpdateGroupsCog()'],
67 ········['../classgmx_1_1UpdateGroupsCog.xhtml',·1,·'gmx::UpdateGroupsCog']67 ········['../classgmx_1_1UpdateGroupsCog.xhtml',·1,·'gmx::UpdateGroupsCog']
68 ····]],68 ····]],
69 ····['updategroupscog_2eh_48',·['updategroupscog.h',·['../updategroupscog_8h.xhtml',·1,·'']]],69 ····['updategroupscog_2eh_48',·['updategroupscog.h',·['../updategroupscog_8h.xhtml',·1,·'']]],
70 ····['updatehistory_49',·['updatehistory',·['../structt__oriresdata.xhtml#a7806904b5f7dcb25d5dec4555be7b5ac',·1,·'t_oriresdata::updateHistory()'],70 ····['updatehistory_49',·['updatehistory',·['../structt__oriresdata.xhtml#a7806904b5f7dcb25d5dec4555be7b5ac',·1,·'t_oriresdata::updateHistory()'],
Offset 108, 16 lines modifiedOffset 108, 16 lines modified
108 ····['useljcombrule_85',·['useLjCombRule',·['../namespaceNbnxm.xhtml#a4e114b889870c41c6ee9afa76847b0e4',·1,·'Nbnxm']]],108 ····['useljcombrule_85',·['useLjCombRule',·['../namespaceNbnxm.xhtml#a4e114b889870c41c6ee9afa76847b0e4',·1,·'Nbnxm']]],
109 ····['usemdgpugraph_86',·['useMdGpuGraph',·['../classgmx_1_1SimulationWorkload.xhtml#a76cb5c0c6b1dcb6f85e381dfbfc5046f',·1,·'gmx::SimulationWorkload']]],109 ····['usemdgpugraph_86',·['useMdGpuGraph',·['../classgmx_1_1SimulationWorkload.xhtml#a76cb5c0c6b1dcb6f85e381dfbfc5046f',·1,·'gmx::SimulationWorkload']]],
110 ····['usemts_87',·['useMts',·['../classgmx_1_1SimulationWorkload.xhtml#ac585c3fa9df3937cb8ae629aa07df131',·1,·'gmx::SimulationWorkload']]],110 ····['usemts_87',·['useMts',·['../classgmx_1_1SimulationWorkload.xhtml#ac585c3fa9df3937cb8ae629aa07df131',·1,·'gmx::SimulationWorkload']]],
111 ····['usenvshmem_88',·['useNvshmem',·['../classgmx_1_1SimulationWorkload.xhtml#ac092afa60701acf7cdcb00032c48172f',·1,·'gmx::SimulationWorkload']]],111 ····['usenvshmem_88',·['useNvshmem',·['../classgmx_1_1SimulationWorkload.xhtml#ac092afa60701acf7cdcb00032c48172f',·1,·'gmx::SimulationWorkload']]],
112 ····['useonlymtscombinedforcebuffer_89',·['useOnlyMtsCombinedForceBuffer',·['../classgmx_1_1StepWorkload.xhtml#a457f1f1072fc3c9c0f5fb089b92f5f90',·1,·'gmx::StepWorkload']]],112 ····['useonlymtscombinedforcebuffer_89',·['useOnlyMtsCombinedForceBuffer',·['../classgmx_1_1StepWorkload.xhtml#a457f1f1072fc3c9c0f5fb089b92f5f90',·1,·'gmx::StepWorkload']]],
113 ····['userdefinedfloat_5f_90',·['userDefinedFloat_',·['../structgmx_1_1MrcDensityMapHeader.xhtml#abec7c46e44fcc58659f2e4f08ce3ca69',·1,·'gmx::MrcDensityMapHeader']]],113 ····['userdefinedfloat_5f_90',·['userDefinedFloat_',·['../structgmx_1_1MrcDensityMapHeader.xhtml#abec7c46e44fcc58659f2e4f08ce3ca69',·1,·'gmx::MrcDensityMapHeader']]],
114 ····['usergpuids_2eh_91',·['usergpuids.h',·['../usergpuids_8h.xhtml',·1,·'']]],114 ····['usergpuids_2eh_91',·['usergpuids.h',·['../usergpuids_8h.xhtml',·1,·'']]],
 115 ····['userinputerror_92',·['userinputerror',·['../classgmx_1_1UserInputError.xhtml',·1,·'gmx::UserInputError'],
115 ····['userinputerror_92',·['userinputerror',·['../classgmx_1_1UserInputError.xhtml#a07ae9dc1612508d54e18079cebdc4316',·1,·'gmx::UserInputError::UserInputError()'],116 ········['../classgmx_1_1UserInputError.xhtml#a07ae9dc1612508d54e18079cebdc4316',·1,·'gmx::UserInputError::UserInputError()']
116 ········['../classgmx_1_1UserInputError.xhtml',·1,·'gmx::UserInputError'] 
117 ····]],117 ····]],
118 ····['usesimd_93',·['useSimd',·['../classgmx_1_1SettleData.xhtml#a6f48e1b037af7f441ccf2119bc5a3d21',·1,·'gmx::SettleData']]],118 ····['usesimd_93',·['useSimd',·['../classgmx_1_1SettleData.xhtml#a6f48e1b037af7f441ccf2119bc5a3d21',·1,·'gmx::SettleData']]],
119 ····['using_20gromacs_20as_20a_20library_94',·['Using·GROMACS·as·a·library',·['../page_usinglibrary.xhtml',·1,·'index']]],119 ····['using_20gromacs_20as_20a_20library_94',·['Using·GROMACS·as·a·library',·['../page_usinglibrary.xhtml',·1,·'index']]],
120 ····['using_20reference_20data_20in_20c_20tests_95',·['Using·reference·data·in·C++·tests',·['../page_refdata.xhtml',·1,·'index']]],120 ····['using_20reference_20data_20in_20c_20tests_95',·['Using·reference·data·in·C++·tests',·['../page_refdata.xhtml',·1,·'index']]],
121 ····['using_20reference_20data_20in_20code_96',·['Using·reference·data·in·code',·['../page_refdata.xhtml#autotoc_md53',·1,·'']]],121 ····['using_20reference_20data_20in_20code_96',·['Using·reference·data·in·code',·['../page_refdata.xhtml#autotoc_md53',·1,·'']]],
122 ····['using_20the_20modular_20simulator_97',·['Using·the·modular·simulator',·['../page_modularsimulator.xhtml#autotoc_md8',·1,·'']]],122 ····['using_20the_20modular_20simulator_97',·['Using·the·modular·simulator',·['../page_modularsimulator.xhtml#autotoc_md8',·1,·'']]],
123 ····['usingfullelectrostatics_98',·['usingFullElectrostatics',·['../md__enums_8h.xhtml#ad148c04f38d8d7b6817df8516b4c6ff4',·1,·'md_enums.h']]],123 ····['usingfullelectrostatics_98',·['usingFullElectrostatics',·['../md__enums_8h.xhtml#ad148c04f38d8d7b6817df8516b4c6ff4',·1,·'md_enums.h']]],
5.19 KB
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Offset 330, 19 lines modifiedOffset 330, 19 lines modified
330 ········['../classForceHelperBuffers.xhtml',·1,·'ForceHelperBuffers']330 ········['../classForceHelperBuffers.xhtml',·1,·'ForceHelperBuffers']
331 ····]],331 ····]],
332 ····['forcemtscombined_191',·['forcemtscombined',·['../classgmx_1_1ForceBuffersView.xhtml#a166f7af032d4e40035ffec7b665ed572',·1,·'gmx::ForceBuffersView::forceMtsCombined()·const'],332 ····['forcemtscombined_191',·['forcemtscombined',·['../classgmx_1_1ForceBuffersView.xhtml#a166f7af032d4e40035ffec7b665ed572',·1,·'gmx::ForceBuffersView::forceMtsCombined()·const'],
333 ········['../classgmx_1_1ForceBuffersView.xhtml#a6c291c3c289aecea56104b7e79325558',·1,·'gmx::ForceBuffersView::forceMtsCombined()']333 ········['../classgmx_1_1ForceBuffersView.xhtml#a6c291c3c289aecea56104b7e79325558',·1,·'gmx::ForceBuffersView::forceMtsCombined()']
334 ····]],334 ····]],
335 ····['forcemtscombinedwithpadding_192',·['forceMtsCombinedWithPadding',·['../classgmx_1_1ForceBuffersView.xhtml#a297d8a01836b387a5ab1be510aed44fa',·1,·'gmx::ForceBuffersView']]],335 ····['forcemtscombinedwithpadding_192',·['forceMtsCombinedWithPadding',·['../classgmx_1_1ForceBuffersView.xhtml#a297d8a01836b387a5ab1be510aed44fa',·1,·'gmx::ForceBuffersView']]],
336 ····['forceoutput_2eh_193',·['forceoutput.h',·['../forceoutput_8h.xhtml',·1,·'']]],336 ····['forceoutput_2eh_193',·['forceoutput.h',·['../forceoutput_8h.xhtml',·1,·'']]],
337 ····['forceoutputs_194',·['forceoutputs',·['../classgmx_1_1ForceOutputs.xhtml',·1,·'gmx::ForceOutputs'], 
338 ········['../classgmx_1_1ForceOutputs.xhtml#abd589c42af0e81e787dd76f03d020187',·1,·'gmx::ForceOutputs::ForceOutputs()']337 ····['forceoutputs_194',·['forceoutputs',·['../classgmx_1_1ForceOutputs.xhtml#abd589c42af0e81e787dd76f03d020187',·1,·'gmx::ForceOutputs::ForceOutputs()'],
 338 ········['../classgmx_1_1ForceOutputs.xhtml',·1,·'gmx::ForceOutputs']
339 ····]],339 ····]],
340 ····['forceparam_195',·['forceparam',·['../classInteractionOfType.xhtml#a6baea034eb73978879f0a9d1fe80d938',·1,·'InteractionOfType::forceParam()'], 
341 ········['../classInteractionOfType.xhtml#a9377381fa12dd22697c3e1b256cd8cf3',·1,·'InteractionOfType::forceParam()·const']340 ····['forceparam_195',·['forceparam',·['../classInteractionOfType.xhtml#a9377381fa12dd22697c3e1b256cd8cf3',·1,·'InteractionOfType::forceParam()·const'],
 341 ········['../classInteractionOfType.xhtml#a6baea034eb73978879f0a9d1fe80d938',·1,·'InteractionOfType::forceParam()']
342 ····]],342 ····]],
343 ····['forceproviderinput_196',·['forceproviderinput',·['../classgmx_1_1ForceProviderInput.xhtml#a2f7907d0aae391014935b848ac4f3561',·1,·'gmx::ForceProviderInput::ForceProviderInput()'],343 ····['forceproviderinput_196',·['forceproviderinput',·['../classgmx_1_1ForceProviderInput.xhtml#a2f7907d0aae391014935b848ac4f3561',·1,·'gmx::ForceProviderInput::ForceProviderInput()'],
344 ········['../classgmx_1_1ForceProviderInput.xhtml',·1,·'gmx::ForceProviderInput']344 ········['../classgmx_1_1ForceProviderInput.xhtml',·1,·'gmx::ForceProviderInput']
345 ····]],345 ····]],
346 ····['forceprovideroutput_197',·['forceprovideroutput',·['../classgmx_1_1ForceProviderOutput.xhtml#a462f088782c665aa46acd9a7492853df',·1,·'gmx::ForceProviderOutput::ForceProviderOutput()'],346 ····['forceprovideroutput_197',·['forceprovideroutput',·['../classgmx_1_1ForceProviderOutput.xhtml#a462f088782c665aa46acd9a7492853df',·1,·'gmx::ForceProviderOutput::ForceProviderOutput()'],
347 ········['../classgmx_1_1ForceProviderOutput.xhtml',·1,·'gmx::ForceProviderOutput']347 ········['../classgmx_1_1ForceProviderOutput.xhtml',·1,·'gmx::ForceProviderOutput']
348 ····]],348 ····]],
Offset 350, 16 lines modifiedOffset 350, 16 lines modified
350 ····['forcerec_199',·['forceRec',·['../structgmx_1_1BenchmarkSystem.xhtml#a534bb21016f5b35597ffc2470da7bdf5',·1,·'gmx::BenchmarkSystem']]],350 ····['forcerec_199',·['forceRec',·['../structgmx_1_1BenchmarkSystem.xhtml#a534bb21016f5b35597ffc2470da7bdf5',·1,·'gmx::BenchmarkSystem']]],
351 ····['forcerec_5f_200',·['forceRec_',·['../classgmx_1_1LegacyInput.xhtml#ab5f30c00289b7ca566dfbd2bcb114c81',·1,·'gmx::LegacyInput']]],351 ····['forcerec_5f_200',·['forceRec_',·['../classgmx_1_1LegacyInput.xhtml#ab5f30c00289b7ca566dfbd2bcb114c81',·1,·'gmx::LegacyInput']]],
352 ····['forces_201',·['forces',·['../group__module__ewald.xhtml',·1,·'Ewald-family·treatments·of·long-ranged·forces'],352 ····['forces_201',·['forces',·['../group__module__ewald.xhtml',·1,·'Ewald-family·treatments·of·long-ranged·forces'],
353 ········['../classgmx_1_1Selection.xhtml#a02f9b69ac0c98fe3a7c857917e220da4',·1,·'gmx::Selection::forces()']353 ········['../classgmx_1_1Selection.xhtml#a02f9b69ac0c98fe3a7c857917e220da4',·1,·'gmx::Selection::forces()']
354 ····]],354 ····]],
355 ····['forcesandenergy_202',·['ForcesAndEnergy',·['../bonded_8h.xhtml#aacdbef16553b9b562a9a05e7b8c135f1aa00644de02a06dd261b599ddc63f3234',·1,·'bonded.h']]],355 ····['forcesandenergy_202',·['ForcesAndEnergy',·['../bonded_8h.xhtml#aacdbef16553b9b562a9a05e7b8c135f1aa00644de02a06dd261b599ddc63f3234',·1,·'bonded.h']]],
356 ····['forcesandvirialandenergy_203',·['ForcesAndVirialAndEnergy',·['../bonded_8h.xhtml#aacdbef16553b9b562a9a05e7b8c135f1ae8e1203cbd97d9a274adbad82b0fb438',·1,·'bonded.h']]],356 ····['forcesandvirialandenergy_203',·['ForcesAndVirialAndEnergy',·['../bonded_8h.xhtml#aacdbef16553b9b562a9a05e7b8c135f1ae8e1203cbd97d9a274adbad82b0fb438',·1,·'bonded.h']]],
357 ····['forcesigmaepsilon_204',·['forcesigmaepsilon',·['../classgmx_1_1LennardJonesCalculator_3_01calculateEnergies_00_01InteractionModifiers_1_1PotSwitch_01_4.xhtml#a86272df0ac3631f0b5bb5a83d7be3624',·1,·'gmx::LennardJonesCalculator&lt;·calculateEnergies,·InteractionModifiers::PotSwitch·&gt;::forceSigmaEpsilon()'], 
358 ········['../classgmx_1_1LennardJonesCalculator_3_01calculateEnergies_00_01InteractionModifiers_1_1ForceSwitch_01_4.xhtml#a69e68d046877a3a0af951b89d5fa2c02',·1,·'gmx::LennardJonesCalculator&lt;·calculateEnergies,·InteractionModifiers::ForceSwitch·&gt;::forceSi[·...·truncated·by·diffoscope;·len:·14,·SHA:·ccbce7bc01d13eb79b649d49964a004c7f3c562c6d4ad921b0c43e301fe3fb42·...·]357 ····['forcesigmaepsilon_204',·['forcesigmaepsilon',·['../classgmx_1_1LennardJonesCalculator_3_01calculateEnergies_00_01InteractionModifiers_1_1ForceSwitch_01_4.xhtml#a69e68d046877a3a0af951b89d5fa2c02',·1,·'gmx::LennardJonesCalculator&lt;·calculateEnergies,·Int[·...·truncated·by·diffoscope;·len:·59,·SHA:·c94f9f844bf7037266c70644b2f1327b2309fcc817718cd923392530b2c0192c·...·]
 358 ········['../classgmx_1_1LennardJonesCalculator_3_01calculateEnergies_00_01InteractionModifiers_1_1PotSwitch_01_4.xhtml#a86272df0ac3631f0b5bb5a83d7be3624',·1,·'gmx::LennardJonesCalculator&lt;·calculateEnergies,·InteractionModifiers::PotSwitch·&gt;::forceSigmaEpsilon()']
359 ····]],359 ····]],
360 ····['forcesnosimd_205',·['ForcesNoSimd',·['../bonded_8h.xhtml#aacdbef16553b9b562a9a05e7b8c135f1a8917e450c056da6d8461932eb69740ab',·1,·'bonded.h']]],360 ····['forcesnosimd_205',·['ForcesNoSimd',·['../bonded_8h.xhtml#aacdbef16553b9b562a9a05e7b8c135f1a8917e450c056da6d8461932eb69740ab',·1,·'bonded.h']]],
361 ····['forcessimdwhenavailable_206',·['ForcesSimdWhenAvailable',·['../bonded_8h.xhtml#aacdbef16553b9b562a9a05e7b8c135f1a5fc0f529c3ea0688814b93b143afe101',·1,·'bonded.h']]],361 ····['forcessimdwhenavailable_206',·['ForcesSimdWhenAvailable',·['../bonded_8h.xhtml#aacdbef16553b9b562a9a05e7b8c135f1a5fc0f529c3ea0688814b93b143afe101',·1,·'bonded.h']]],
362 ····['forcesvector_207',·['ForcesVector',·['../namespacegmx_1_1test.xhtml#ad784e0ed3eca143a1a3a36da930300df',·1,·'gmx::test']]],362 ····['forcesvector_207',·['ForcesVector',·['../namespacegmx_1_1test.xhtml#ad784e0ed3eca143a1a3a36da930300df',·1,·'gmx::test']]],
363 ····['forcetable_2eh_208',·['forcetable.h',·['../forcetable_8h.xhtml',·1,·'']]],363 ····['forcetable_2eh_208',·['forcetable.h',·['../forcetable_8h.xhtml',·1,·'']]],
364 ····['forcewithpadding_209',·['forceWithPadding',·['../classgmx_1_1ForceBuffersView.xhtml#a90ada9d30335398fb2b31e296c92487b',·1,·'gmx::ForceBuffersView']]],364 ····['forcewithpadding_209',·['forceWithPadding',·['../classgmx_1_1ForceBuffersView.xhtml#a90ada9d30335398fb2b31e296c92487b',·1,·'gmx::ForceBuffersView']]],
365 ····['forcewithshiftforces_210',·['forcewithshiftforces',·['../classgmx_1_1ForceWithShiftForces.xhtml',·1,·'gmx::ForceWithShiftForces'],365 ····['forcewithshiftforces_210',·['forcewithshiftforces',·['../classgmx_1_1ForceWithShiftForces.xhtml',·1,·'gmx::ForceWithShiftForces'],
378 KB
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378 KB
index.xml
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Offset 72347, 19 lines modifiedOffset 72347, 19 lines modified
72347 ····<member·refid="template_8cpp_1a0ddf1224851353fc92bfbff6f499fa97"·kind="function">72347 ····<member·refid="template_8cpp_1a0ddf1224851353fc92bfbff6f499fa97"·kind="function">
72348 ······<name>main</name>72348 ······<name>main</name>
72349 ····</member>72349 ····</member>
72350 ··</compound>72350 ··</compound>
72351 ··<compound·refid="abstractdata_8cpp"·kind="file">72351 ··<compound·refid="abstractdata_8cpp"·kind="file">
72352 ····<name>abstractdata.cpp</name>72352 ····<name>abstractdata.cpp</name>
72353 ··</compound>72353 ··</compound>
72354 ··<compound·refid="analysisdata_8cpp"·kind="file">72354 ··<compound·refid="arraydata_8cpp"·kind="file">
72355 ····<name>analysisdata.cpp</name>72355 ····<name>arraydata.cpp</name>
72356 ··</compound>72356 ··</compound>
72357 ··<compound·refid="tests_2analysisdata_8cpp"·kind="file">72357 ··<compound·refid="tests_2arraydata_8cpp"·kind="file">
72358 ····<name>analysisdata.cpp</name>72358 ····<name>arraydata.cpp</name>
72359 ··</compound>72359 ··</compound>
72360 ··<compound·refid="dataframe_8cpp"·kind="file">72360 ··<compound·refid="dataframe_8cpp"·kind="file">
72361 ····<name>dataframe.cpp</name>72361 ····<name>dataframe.cpp</name>
72362 ··</compound>72362 ··</compound>
72363 ··<compound·refid="datamodule_8cpp"·kind="file">72363 ··<compound·refid="datamodule_8cpp"·kind="file">
72364 ····<name>datamodule.cpp</name>72364 ····<name>datamodule.cpp</name>
72365 ··</compound>72365 ··</compound>
Offset 72380, 83 lines modifiedOffset 72380, 95 lines modified
72380 ··</compound>72380 ··</compound>
72381 ··<compound·refid="datastorage_8h"·kind="file">72381 ··<compound·refid="datastorage_8h"·kind="file">
72382 ····<name>datastorage.h</name>72382 ····<name>datastorage.h</name>
72383 ··</compound>72383 ··</compound>
72384 ··<compound·refid="framelocaldata_8h"·kind="file">72384 ··<compound·refid="framelocaldata_8h"·kind="file">
72385 ····<name>framelocaldata.h</name>72385 ····<name>framelocaldata.h</name>
72386 ··</compound>72386 ··</compound>
 72387 ··<compound·refid="modules_2average_8cpp"·kind="file">
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72387 ··<compound·refid="displacement_8cpp"·kind="file">72393 ··<compound·refid="displacement_8cpp"·kind="file">
72388 ····<name>displacement.cpp</name>72394 ····<name>displacement.cpp</name>
72389 ··</compound>72395 ··</compound>
72390 ··<compound·refid="frameaverager_8cpp"·kind="file">72396 ··<compound·refid="frameaverager_8cpp"·kind="file">
72391 ····<name>frameaverager.cpp</name>72397 ····<name>frameaverager.cpp</name>
72392 ··</compound>72398 ··</compound>
72393 ··<compound·refid="frameaverager_8h"·kind="file">72399 ··<compound·refid="frameaverager_8h"·kind="file">
72394 ····<name>frameaverager.h</name>72400 ····<name>frameaverager.h</name>
72395 ··</compound>72401 ··</compound>
 72402 ··<compound·refid="modules_2histogram_8cpp"·kind="file">
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 72408 ··<compound·refid="modules_2lifetime_8cpp"·kind="file">
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 72411 ··<compound·refid="tests_2lifetime_8cpp"·kind="file">
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 72413 ··</compound>
72396 ··<compound·refid="plot_8cpp"·kind="file">72414 ··<compound·refid="plot_8cpp"·kind="file">
72397 ····<name>plot.cpp</name>72415 ····<name>plot.cpp</name>
72398 ··</compound>72416 ··</compound>
72399 ··<compound·refid="paralleloptions_8h"·kind="file">72417 ··<compound·refid="paralleloptions_8h"·kind="file">
72400 ····<name>paralleloptions.h</name>72418 ····<name>paralleloptions.h</name>
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72402 ··<compound·refid="arraydata_8cpp"·kind="file">72420 ··<compound·refid="analysisdata_8cpp"·kind="file">
72403 ····<name>arraydata.cpp</name>72421 ····<name>analysisdata.cpp</name>
72404 ··</compound> 
72405 ··<compound·refid="tests_2arraydata_8cpp"·kind="file"> 
72406 ····<name>arraydata.cpp</name> 
72407 ··</compound> 
72408 ··<compound·refid="modules_2average_8cpp"·kind="file"> 
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72410 ··</compound>72422 ··</compound>
72411 ··<compound·refid="tests_2average_8cpp"·kind="file">72423 ··<compound·refid="tests_2analysisdata_8cpp"·kind="file">
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72414 ··<compound·refid="datatest_8cpp"·kind="file">72426 ··<compound·refid="datatest_8cpp"·kind="file">
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72416 ··</compound>72428 ··</compound>
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72419 ··</compound>72431 ··</compound>
72420 ··<compound·refid="modules_2histogram_8cpp"·kind="file"> 
72421 ····<name>histogram.cpp</name> 
72422 ··</compound> 
72423 ··<compound·refid="tests_2histogram_8cpp"·kind="file"> 
72424 ····<name>histogram.cpp</name> 
72425 ··</compound> 
72426 ··<compound·refid="modules_2lifetime_8cpp"·kind="file"> 
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72428 ··</compound> 
72429 ··<compound·refid="tests_2lifetime_8cpp"·kind="file"> 
72430 ····<name>lifetime.cpp</name> 
72431 ··</compound> 
72432 ··<compound·refid="mock__datamodule_8cpp"·kind="file">72432 ··<compound·refid="mock__datamodule_8cpp"·kind="file">
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2628 ··············<anchor·id="todo_1_todo000154"/>2628 ··············<anchor·id="todo_1_todo000154"/>
2629 ··············Change·this·to·class2629 ··············Change·this·to·class
2630 ············</para>2630 ············</para>
2631 ··········</listitem>2631 ··········</listitem>
2632 ··········<varlistentry>2632 ··········<varlistentry>
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2634 ··············Member2634 ··············Member
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2636 ··············(const2636 ··············(const
2637 ··············<ref·refid="structt__commrec"·kindref="compound">t_commrec</ref>2637 ··············<ref·refid="structt__commrec"·kindref="compound">t_commrec</ref>
2638 ··············*cr,·const2638 ··············*cr,·const
2639 ··············<ref·refid="structNumPmeDomains"·kindref="compound">NumPmeDomains</ref>2639 ··············<ref·refid="structNumPmeDomains"·kindref="compound">NumPmeDomains</ref>
2640 ··············&amp;numPmeDomains,·const2640 ··············&amp;numPmeDomains,·const
2641 ··············<ref·refid="structt__inputrec"·kindref="compound">t_inputrec</ref>2641 ··············<ref·refid="structt__inputrec"·kindref="compound">t_inputrec</ref>
2642 ··············*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,2642 ··············*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,
Offset 3198, 15 lines modifiedOffset 3198, 15 lines modified
3198 ··············<ndash/>3198 ··············<ndash/>
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3201 ··········</listitem>3201 ··········</listitem>
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3206 ··············(const·gmx_pme_t·*pme)3206 ··············(const·gmx_pme_t·*pme)
3207 ············</term>3207 ············</term>
3208 ··········</varlistentry>3208 ··········</varlistentry>
3209 ··········<listitem>3209 ··········<listitem>
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3211 ··············<anchor·id="todo_1_todo000027"/>3211 ··············<anchor·id="todo_1_todo000027"/>
3212 ··············This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.3212 ··············This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.
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17508 Dimitrios·Karkoulis,·Peter·Kasson,·Sebastian·Kehl,·Sebastian·Keller,·Jiri·Kraus,·Per·Larsson,·Viveca·Lindahl,17508 Dimitrios·Karkoulis,·Peter·Kasson,·Sebastian·Kehl,·Sebastian·Keller,·Jiri·Kraus,·Per·Larsson,·Viveca·Lindahl,
17509 Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Michael·Shirts,·Alfons·Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,17509 Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Michael·Shirts,·Alfons·Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,
17510 Maarten·Wolf,·Artem·Zhmurov17510 Maarten·Wolf,·Artem·Zhmurov
17511 Project·leaders:·Berk·Hess,·Erik·Lindahl17511 Project·leaders:·Berk·Hess,·Erik·Lindahl
17512 ©·1991··2000:17512 ©·1991··2000:
17513 Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen,17513 Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen,
17514 The·Netherlands.17514 The·Netherlands.
17515 ©·2001··2024:17515 ©·2001··2026:
17516 The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University,17516 The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University,
17517 Sweden.17517 Sweden.
17518 This·manual·is·not·complete·and·has·no·pretension·to·be·so·due·to·lack·of·time·of·the·contributors··our·first17518 This·manual·is·not·complete·and·has·no·pretension·to·be·so·due·to·lack·of·time·of·the·contributors··our·first
17519 priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information17519 priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information
17520 is·not·entirely·correct.17520 is·not·entirely·correct.
17521 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer17521 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer
17522 discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·590)),·or·open·an·issue·on·our·issue17522 discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·590)),·or·open·an·issue·on·our·issue
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00011000:·656d·6973·7472·792c·2055·6e69·7665·7273··emistry,·Univers00011000:·656d·6973·7472·792c·2055·6e69·7665·7273··emistry,·Univers
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00011030:·3937·3437·2041·4720·4772·6f6e·696e·6765··9747·AG·Groninge00011030:·3937·3437·2041·4720·4772·6f6e·696e·6765··9747·AG·Groninge
00011040:·6e2c·2054·6865·204e·6574·6865·726c·616e··n,·The·Netherlan00011040:·6e2c·2054·6865·204e·6574·6865·726c·616e··n,·The·Netherlan
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00011060:·626c·6f63·6b71·756f·7465·3e0a·3c70·3ec2··blockquote>.<p>.00011060:·626c·6f63·6b71·756f·7465·3e0a·3c70·3ec2··blockquote>.<p>.
00011070:·a920·3230·3031·20e2·8093·2032·3032·343a··.·2001·...·2024:00011070:·a920·3230·3031·20e2·8093·2032·3032·363a··.·2001·...·2026:
00011080:·3c2f·703e·0a3c·626c·6f63·6b71·756f·7465··</p>.<blockquote00011080:·3c2f·703e·0a3c·626c·6f63·6b71·756f·7465··</p>.<blockquote
00011090:·3e0a·3c64·6976·3e3c·703e·5468·6520·4752··>.<div><p>The·GR00011090:·3e0a·3c64·6976·3e3c·703e·5468·6520·4752··>.<div><p>The·GR
000110a0:·4f4d·4143·5320·6465·7665·6c6f·706d·656e··OMACS·developmen000110a0:·4f4d·4143·5320·6465·7665·6c6f·706d·656e··OMACS·developmen
000110b0:·7420·7465·616d·7320·6174·2074·6865·2052··t·teams·at·the·R000110b0:·7420·7465·616d·7320·6174·2074·6865·2052··t·teams·at·the·R
000110c0:·6f79·616c·2049·6e73·7469·7475·7465·206f··oyal·Institute·o000110c0:·6f79·616c·2049·6e73·7469·7475·7465·206f··oyal·Institute·o
000110d0:·6620·5465·6368·6e6f·6c6f·6779·2061·6e64··f·Technology·and000110d0:·6620·5465·6368·6e6f·6c6f·6779·2061·6e64··f·Technology·and
000110e0:·0a55·7070·7361·6c61·2055·6e69·7665·7273··.Uppsala·Univers000110e0:·0a55·7070·7361·6c61·2055·6e69·7665·7273··.Uppsala·Univers
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442 Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Michael·Shirts,·Alfons·Sijbers,442 Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Michael·Shirts,·Alfons·Sijbers,
443 Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon443 Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon
444 Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov444 Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov
445 Project·leaders:·Berk·Hess,·Erik·Lindahl445 Project·leaders:·Berk·Hess,·Erik·Lindahl
446 ©·1991··2000:446 ©·1991··2000:
447 ·····Department·of·Biophysical·Chemistry,·University·of·Groningen.447 ·····Department·of·Biophysical·Chemistry,·University·of·Groningen.
448 ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands.448 ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands.
449 ©·2001··2024:449 ©·2001··2026:
450 ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology450 ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology
451 ·····and·Uppsala·University,·Sweden.451 ·····and·Uppsala·University,·Sweden.
452 This·manual·is·not·complete·and·has·no·pretension·to·be·so·due·to·lack·of·time452 This·manual·is·not·complete·and·has·no·pretension·to·be·so·due·to·lack·of·time
453 of·the·contributors··our·first·priority·is·to·improve·the·software.·It·is453 of·the·contributors··our·first·priority·is·to·improve·the·software.·It·is
454 worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not454 worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not
455 entirely·correct.455 entirely·correct.
456 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r456 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r
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10874 ········"2022":·[0,·17,·28,·29,·39,·270,·284,·285,·306,·312,·313,·314,·315,·316,·317,·326,·357],10874 ········"2022":·[0,·17,·28,·29,·39,·270,·284,·285,·306,·312,·313,·314,·315,·316,·317,·326,·357],
10875 ········"2023":·[38,·39,·123,·194,·286,·300,·301,·322,·328,·329,·330,·331,·357],10875 ········"2023":·[38,·39,·123,·194,·286,·300,·301,·322,·328,·329,·330,·331,·357],
10876 ········"2024":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·332,·333,·335,·336,·337,·338,·339,·340,·341,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357,·358,·359,·360,·361],10876 ········"2024":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·332,·333,·335,·336,·337,·338,·339,·340,·341,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357,·358,·359,·360,·361],
10877 ········"2025":·[222,·342],10877 ········"2025":·[222,·342],
10878 ········"2026":·248,10878 ········"2026":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·6[·...·truncated·by·diffoscope;·len:·1444,·SHA:·444eaffcaeaf395c7129df8a68a038146dc491c7656e03ee14928d1164a3c8aa·...·],
10879 ········"2027":·248,10879 ········"2027":·248,
10880 ········"2028":·248,10880 ········"2028":·248,
10881 ········"2029":·222,10881 ········"2029":·222,
10882 ········"2031":·241,10882 ········"2031":·241,
10883 ········"2032":·[50,·194,·241],10883 ········"2032":·[50,·194,·241],
10884 ········"2033":·222,10884 ········"2033":·222,
10885 ········"2037":·[222,·238,·249],10885 ········"2037":·[222,·238,·249],