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1 -rw-r--r--···0········0········0········4·2024-11-01·03:23:53.000000·debian-binary1 -rw-r--r--···0········0········0········4·2024-11-01·03:23:53.000000·debian-binary
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1 Package:·gromacs-data1 Package:·gromacs-data
2 Source:·gromacs2 Source:·gromacs
3 Version:·2024.4-13 Version:·2024.4-1
4 Architecture:·all4 Architecture:·all
5 Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org>5 Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org>
6 Installed-Size:·3004906 Installed-Size:·300494
7 Depends:·libjs-mathjax7 Depends:·libjs-mathjax
8 Recommends:·gromacs8 Recommends:·gromacs
9 Section:·science9 Section:·science
10 Priority:·optional10 Priority:·optional
11 Multi-Arch:·foreign11 Multi-Arch:·foreign
12 Homepage:·https://www.gromacs.org/12 Homepage:·https://www.gromacs.org/
13 Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation13 Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation
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74 </div><!--·top·-->74 </div><!--·top·-->
75 <div><div·class="header">75 <div><div·class="header">
76 ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div>76 ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div>
77 </div><!--header-->77 </div><!--header-->
78 <div·class="contents">78 <div·class="contents">
79 <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p>79 <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p>
80 <div·class="dotgraph">80 <div·class="dotgraph">
81 <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="3298"·height="1712"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>81 <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="3966"·height="1462"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
82 ·<h1><a·class="anchor"·id="autotoc_md49"></a>82 ·<h1><a·class="anchor"·id="autotoc_md49"></a>
83 Legend</h1>83 Legend</h1>
84 <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p>84 <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p>
85 <div·class="dotgraph">85 <div·class="dotgraph">
86 <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>86 <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
87 <p>Node·colors:·</p><dl>87 <p>Node·colors:·</p><dl>
88 <dt>gray·background·</dt>88 <dt>gray·background·</dt>
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107 ····['makepreprocessoroptions_76',·['makePreprocessorOptions',·['../ocl__compiler_8cpp.xhtml#a153ca6bd9b7d0c8003b267169ab0b0e1',·1,·'gmx::ocl']]],107 ····['makepreprocessoroptions_76',·['makePreprocessorOptions',·['../ocl__compiler_8cpp.xhtml#a153ca6bd9b7d0c8003b267169ab0b0e1',·1,·'gmx::ocl']]],
108 ····['makeprogramfromcache_77',·['makeProgramFromCache',·['../ocl__caching_8cpp.xhtml#a9f9b1fc653bcb02f7f46e5bd6bb2f05d',·1,·'gmx::ocl']]],108 ····['makeprogramfromcache_77',·['makeProgramFromCache',·['../ocl__caching_8cpp.xhtml#a9f9b1fc653bcb02f7f46e5bd6bb2f05d',·1,·'gmx::ocl']]],
109 ····['makerandomseed_78',·['makeRandomSeed',·['../namespacegmx.xhtml#a36cfc66dfee3ab6a934e04486bbf05e6',·1,·'gmx']]],109 ····['makerandomseed_78',·['makeRandomSeed',·['../namespacegmx.xhtml#a36cfc66dfee3ab6a934e04486bbf05e6',·1,·'gmx']]],
110 ····['makerandomseedinternal_79',·['makeRandomSeedInternal',·['../namespacegmx.xhtml#ab08f1195b83d7128d3c4000aa22ba0e8',·1,·'gmx']]],110 ····['makerandomseedinternal_79',·['makeRandomSeedInternal',·['../namespacegmx.xhtml#ab08f1195b83d7128d3c4000aa22ba0e8',·1,·'gmx']]],
111 ····['makerealstrides_80',·['makeRealStrides',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03.xhtml#a0c29c98856bc6245820f6bd5ca830bba',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]],111 ····['makerealstrides_80',·['makeRealStrides',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03.xhtml#a0c29c98856bc6245820f6bd5ca830bba',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]],
112 ····['makerefdatafilename_81',·['makerefdatafilename',·['../namespacegmx_1_1test.xhtml#a186c4a54149691e05141d4bd2355a861',·1,·'gmx::test::makeRefDataFileName()'], 
113 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03.xhtml#af070fa4b5e37706561c293db35d39f1f',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}::makeRefDataFileName()']112 ····['makerefdatafilename_81',·['makerefdatafilename',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03.xhtml#af070fa4b5e37706561c293db35d39f1f',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}::makeRefDataFileName()'],
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114 ····]],114 ····]],
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116 ····['makervecarray_83',·['makeRvecArray',·['../state_8h.xhtml#aa69dfdec392ef5ac146b0b4f508ee9d9',·1,·'state.cpp']]],116 ····['makervecarray_83',·['makeRvecArray',·['../state_8h.xhtml#aa69dfdec392ef5ac146b0b4f508ee9d9',·1,·'state.cpp']]],
117 ····['makesimpletopology_84',·['makeSimpleTopology',·['../classanonymous__namespace_02indexutil_8cpp_03_1_1IndexBlockTest.xhtml#ae2a783ea7f644aec26c5c36688e73c0b',·1,·'anonymous_namespace{indexutil.cpp}::IndexBlockTest']]],117 ····['makesimpletopology_84',·['makeSimpleTopology',·['../classanonymous__namespace_02indexutil_8cpp_03_1_1IndexBlockTest.xhtml#ae2a783ea7f644aec26c5c36688e73c0b',·1,·'anonymous_namespace{indexutil.cpp}::IndexBlockTest']]],
118 ····['makesimulationinput_85',·['makeSimulationInput',·['../group__module__mdrun.xhtml#gae18c40e552af59d3ac816c1b943a57bc',·1,·'gmx']]],118 ····['makesimulationinput_85',·['makeSimulationInput',·['../group__module__mdrun.xhtml#gae18c40e552af59d3ac816c1b943a57bc',·1,·'gmx']]],
119 ····['makesolvekernel_86',·['makeSolveKernel',·['../pme__solve__sycl_8cpp.xhtml#a64e706e97c6587265b3b42ceace902ce',·1,·'pme_solve_sycl.cpp']]],119 ····['makesolvekernel_86',·['makeSolveKernel',·['../pme__solve__sycl_8cpp.xhtml#a64e706e97c6587265b3b42ceace902ce',·1,·'pme_solve_sycl.cpp']]],
120 ····['makespreadkernel_87',·['makeSpreadKernel',·['../namespacegmx_1_1anonymous__namespace_02densityfittingforceprovider_8cpp_03.xhtml#a71d9cb1e033ddafcc72c5c7285386360',·1,·'gmx::anonymous_namespace{densityfittingforceprovider.cpp}']]],120 ····['makespreadkernel_87',·['makeSpreadKernel',·['../namespacegmx_1_1anonymous__namespace_02densityfittingforceprovider_8cpp_03.xhtml#a71d9cb1e033ddafcc72c5c7285386360',·1,·'gmx::anonymous_namespace{densityfittingforceprovider.cpp}']]],
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127 ····['makeunperturbedlj14params_94',·['makeUnperturbedLJ14Params',·['../namespacegmx_1_1anonymous__namespace_02topsort_8cpp_03.xhtml#a1a653dc65c6030e9a3825cf07c884f22',·1,·'gmx::anonymous_namespace{topsort.cpp}']]],127 ····['makeunperturbedlj14params_94',·['makeUnperturbedLJ14Params',·['../namespacegmx_1_1anonymous__namespace_02topsort_8cpp_03.xhtml#a1a653dc65c6030e9a3825cf07c884f22',·1,·'gmx::anonymous_namespace{topsort.cpp}']]],
128 ····['makeupdategroupingspermoleculetype_95',·['makeupdategroupingspermoleculetype',·['../namespacegmx.xhtml#aa51b331e6dc5454e57b96838b2d503af',·1,·'gmx::makeUpdateGroupingsPerMoleculeType(const·gmx_moltype_t·&amp;moltype,·gmx::ArrayRef&lt;·const·t_iparams·&gt;·iparams)'],128 ····['makeupdategroupingspermoleculetype_95',·['makeupdategroupingspermoleculetype',·['../namespacegmx.xhtml#aa51b331e6dc5454e57b96838b2d503af',·1,·'gmx::makeUpdateGroupingsPerMoleculeType(const·gmx_moltype_t·&amp;moltype,·gmx::ArrayRef&lt;·const·t_iparams·&gt;·iparams)'],
129 ········['../namespacegmx.xhtml#a716fe4766d0dbb653552d9287feb563f',·1,·'gmx::makeUpdateGroupingsPerMoleculeType(const·gmx_mtop_t·&amp;mtop)']129 ········['../namespacegmx.xhtml#a716fe4766d0dbb653552d9287feb563f',·1,·'gmx::makeUpdateGroupingsPerMoleculeType(const·gmx_mtop_t·&amp;mtop)']
130 ····]],130 ····]],
131 ····['makeupdategroups_96',·['makeUpdateGroups',·['../namespacegmx.xhtml#a2dc1261c727390c49373b57c3581f1af',·1,·'gmx']]],131 ····['makeupdategroups_96',·['makeUpdateGroups',·['../namespacegmx.xhtml#a2dc1261c727390c49373b57c3581f1af',·1,·'gmx']]],
132 ····['makevendorflavorchoice_97',·['makeVendorFlavorChoice',·['../ocl__compiler_8cpp.xhtml#ab7da5ff7c4af27a4a1789dbd342a8966',·1,·'gmx::ocl']]],132 ····['makevendorflavorchoice_97',·['makeVendorFlavorChoice',·['../ocl__compiler_8cpp.xhtml#ab7da5ff7c4af27a4a1789dbd342a8966',·1,·'gmx::ocl']]],
133 ····['makevirtualsiteshandler_98',·['makeVirtualSitesHandler',·['../namespacegmx.xhtml#ad59dd2687a751a26481a0a774f51146a',·1,·'gmx']]],133 ····['makevirtualsiteshandler_98',·['makeVirtualSitesHandler',·['../namespacegmx.xhtml#ad59dd2687a751a26481a0a774f51146a',·1,·'gmx']]],
134 ····['malloc_99',·['malloc',·['../classgmx_1_1PageAlignedAllocationPolicy.xhtml#aefa29138219cff2f879abf3e92d2aa20',·1,·'gmx::PageAlignedAllocationPolicy::malloc()'], 
135 ········['../classgmx_1_1HostAllocationPolicy.xhtml#abea041287228e8b33c288bd9b3713b6c',·1,·'gmx::HostAllocationPolicy::malloc()'],134 ····['malloc_99',·['malloc',·['../classgmx_1_1HostAllocationPolicy.xhtml#abea041287228e8b33c288bd9b3713b6c',·1,·'gmx::HostAllocationPolicy::malloc()'],
136 ········['../classgmx_1_1AlignedAllocationPolicy.xhtml#ae8815b9093593a20638c4071395a1ca6',·1,·'gmx::AlignedAllocationPolicy::malloc()']135 ········['../classgmx_1_1AlignedAllocationPolicy.xhtml#ae8815b9093593a20638c4071395a1ca6',·1,·'gmx::AlignedAllocationPolicy::malloc()'],
 136 ········['../classgmx_1_1PageAlignedAllocationPolicy.xhtml#aefa29138219cff2f879abf3e92d2aa20',·1,·'gmx::PageAlignedAllocationPolicy::malloc()']
137 ····]],137 ····]],
138 ····['mallocimpl_100',·['mallocImpl',·['../namespacegmx_1_1anonymous__namespace_02alignedallocator_8cpp_03.xhtml#a824a99e0446104045db4c13ac052f953',·1,·'gmx::anonymous_namespace{alignedallocator.cpp}']]],138 ····['mallocimpl_100',·['mallocImpl',·['../namespacegmx_1_1anonymous__namespace_02alignedallocator_8cpp_03.xhtml#a824a99e0446104045db4c13ac052f953',·1,·'gmx::anonymous_namespace{alignedallocator.cpp}']]],
139 ····['manage_5fthreading_2ecpp_101',·['manage_threading.cpp',·['../manage__threading_8cpp.xhtml',·1,·'']]],139 ····['manage_5fthreading_2ecpp_101',·['manage_threading.cpp',·['../manage__threading_8cpp.xhtml',·1,·'']]],
140 ····['manage_5fthreading_2eh_102',·['manage_threading.h',·['../manage__threading_8h.xhtml',·1,·'']]],140 ····['manage_5fthreading_2eh_102',·['manage_threading.h',·['../manage__threading_8h.xhtml',·1,·'']]],
141 ····['managedevelopmentfeatures_103',·['manageDevelopmentFeatures',·['../namespacegmx.xhtml#a4543c745531b85d84f1da8d06d1b82a8',·1,·'gmx']]],141 ····['managedevelopmentfeatures_103',·['manageDevelopmentFeatures',·['../namespacegmx.xhtml#a4543c745531b85d84f1da8d06d1b82a8',·1,·'gmx']]],
142 ····['managegeneratedoutputfile_104',·['manageGeneratedOutputFile',·['../classgmx_1_1test_1_1TestFileManager.xhtml#af0ffc0ec6e12b37178c20f775d58c10f',·1,·'gmx::test::TestFileManager']]],142 ····['managegeneratedoutputfile_104',·['manageGeneratedOutputFile',·['../classgmx_1_1test_1_1TestFileManager.xhtml#af0ffc0ec6e12b37178c20f775d58c10f',·1,·'gmx::test::TestFileManager']]],
143 ····['management_105',·['Data·management',·['../page_modularsimulator.xhtml#autotoc_md39',·1,·'']]],143 ····['management_105',·['Data·management',·['../page_modularsimulator.xhtml#autotoc_md39',·1,·'']]],
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152 ········['../classgmx_1_1internal_1_1OptionsImpl.xhtml#ac6b12c0ab7bd35f3223562488836479f',·1,·'gmx::internal::OptionsImpl::managers_']152 ········['../classgmx_1_1internal_1_1OptionsImpl.xhtml#ac6b12c0ab7bd35f3223562488836479f',·1,·'gmx::internal::OptionsImpl::managers_']
153 ····]],153 ····]],
154 ····['managesyncwithppcoordinatesendergpu_111',·['manageSyncWithPpCoordinateSenderGpu',·['../pme__gpu__internal_8cpp.xhtml#accf882be0b30fca6ededabd9470cfbc7',·1,·'pme_gpu_internal.cpp']]],154 ····['managesyncwithppcoordinatesendergpu_111',·['manageSyncWithPpCoordinateSenderGpu',·['../pme__gpu__internal_8cpp.xhtml#accf882be0b30fca6ededabd9470cfbc7',·1,·'pme_gpu_internal.cpp']]],
155 ····['manualoutputfile_112',·['ManualOutputFile',·['../structgmx_1_1test_1_1anonymous__namespace_02extract__cluster_8cpp_03_1_1ManualOutputFile.xhtml',·1,·'gmx::test::anonymous_namespace{extract_cluster.cpp}']]],155 ····['manualoutputfile_112',·['ManualOutputFile',·['../structgmx_1_1test_1_1anonymous__namespace_02extract__cluster_8cpp_03_1_1ManualOutputFile.xhtml',·1,·'gmx::test::anonymous_namespace{extract_cluster.cpp}']]],
156 ····['many_5fauto_5fcorrel_113',·['many_auto_correl',·['../manyautocorrelation_8h.xhtml#ad3b9966ff6279f6316c3c898e31f0dee',·1,·'many_auto_correl(std::vector&lt;·std::vector&lt;·real·&gt;·&gt;·*c):&#160;manyautocorrelation.cpp'],156 ····['many_5fauto_5fcorrel_113',·['many_auto_correl',·['../manyautocorrelation_8h.xhtml#ad3b9966ff6279f6316c3c898e31f0dee',·1,·'many_auto_correl(std::vector&lt;·std::vector&lt;·real·&gt;·&gt;·*c):&#160;manyautocorrelation.cpp'],
157 ········['../manyautocorrelation_8cpp.xhtml#ad3b9966ff6279f6316c3c898e31f0dee',·1,·'many_auto_correl(std::vector&lt;·std::vector&lt;·real·&gt;·&gt;·*c):&#160;manyautocorrelation.cpp']157 ········['../manyautocorrelation_8cpp.xhtml#ad3b9966ff6279f6316c3c898e31f0dee',·1,·'many_auto_correl(std::vector&lt;·std::vector&lt;·real·&gt;·&gt;·*c):&#160;manyautocorrelation.cpp']
158 ····]],158 ····]],
159 ····['many_5fcross_5fcorr_114',·['many_cross_corr',·['../crosscorr_8h.xhtml#a953d512f8171310c10a4d0f4121d1a33',·1,·'many_cross_corr(int·nFunc,·int·*nData,·real·**f,·real·**g,·real·**corr):&#160;crosscorr.cpp'],159 ····['many_5fcross_5fcorr_114',·['many_cross_corr',·['../crosscorr_8cpp.xhtml#a953d512f8171310c10a4d0f4121d1a33',·1,·'many_cross_corr(int·nFunc,·int·*nData,·real·**f,·real·**g,·real·**corr):&#160;crosscorr.cpp'],
160 ········['../crosscorr_8cpp.xhtml#a953d512f8171310c10a4d0f4121d1a33',·1,·'many_cross_corr(int·nFunc,·int·*nData,·real·**f,·real·**g,·real·**corr):&#160;crosscorr.cpp']160 ········['../crosscorr_8h.xhtml#a953d512f8171310c10a4d0f4121d1a33',·1,·'many_cross_corr(int·nFunc,·int·*nData,·real·**f,·real·**g,·real·**corr):&#160;crosscorr.cpp']
161 ····]],161 ····]],
162 ····['manyautocorrelation_2ecpp_115',·['manyautocorrelation.cpp',·['../manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)'],162 ····['manyautocorrelation_2ecpp_115',·['manyautocorrelation.cpp',·['../manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)'],
163 ········['../tests_2manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)']163 ········['../tests_2manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)']
164 ····]],164 ····]],
165 ····['manyautocorrelation_2eh_116',·['manyautocorrelation.h',·['../manyautocorrelation_8h.xhtml',·1,·'']]],165 ····['manyautocorrelation_2eh_116',·['manyautocorrelation.h',·['../manyautocorrelation_8h.xhtml',·1,·'']]],
166 ····['map_117',·['map',·['../structt__matrix.xhtml#a4cfcb489019e79bf56990ce36cefe00f',·1,·'t_matrix']]],166 ····['map_117',·['map',·['../structt__matrix.xhtml#a4cfcb489019e79bf56990ce36cefe00f',·1,·'t_matrix']]],
167 ····['mapb_118',·['mapb',·['../structgmx__ana__indexmap__t.xhtml#aabf74268915bc1a13aaaa95c236d5e08',·1,·'gmx_ana_indexmap_t']]],167 ····['mapb_118',·['mapb',·['../structgmx__ana__indexmap__t.xhtml#aabf74268915bc1a13aaaa95c236d5e08',·1,·'gmx_ana_indexmap_t']]],
168 ····['mapconstiterator_119',·['MapConstIterator',·['../classgmx_1_1EnergyFrame.xhtml#a5b3ca67a8497cc2cf77f3c0da771fa95',·1,·'gmx::EnergyFrame']]],168 ····['mapconstiterator_119',·['MapConstIterator',·['../classgmx_1_1EnergyFrame.xhtml#a5b3ca67a8497cc2cf77f3c0da771fa95',·1,·'gmx::EnergyFrame']]],
169 ····['mapgridtodatagrid_120',·['mapGridToDataGrid',·['../namespacegmx.xhtml#ad49aba237e75034450c40885fccde22c',·1,·'gmx']]],169 ····['mapgridtodatagrid_120',·['mapGridToDataGrid',·['../namespacegmx.xhtml#ad49aba237e75034450c40885fccde22c',·1,·'gmx']]],
170 ····['mapid_121',·['mapid',·['../structgmx__ana__indexmap__t.xhtml#a2675a18d204f864f94da0d616c115884',·1,·'gmx_ana_indexmap_t']]],170 ····['mapid_121',·['mapid',·['../structgmx__ana__indexmap__t.xhtml#a2675a18d204f864f94da0d616c115884',·1,·'gmx_ana_indexmap_t']]],
171 ····['mappedid_122',·['mappedId',·['../classgmx_1_1SelectionPosition.xhtml#a9b2a183cd94c03a9aabe10c89e73648b',·1,·'gmx::SelectionPosition']]],171 ····['mappedid_122',·['mappedId',·['../classgmx_1_1SelectionPosition.xhtml#a9b2a183cd94c03a9aabe10c89e73648b',·1,·'gmx::SelectionPosition']]],
172 ····['mappedids_123',·['mappedIds',·['../classgmx_1_1Selection.xhtml#a44d2c2cd4db4eade34cac95f5916a2a0',·1,·'gmx::Selection']]],172 ····['mappedids_123',·['mappedIds',·['../classgmx_1_1Selection.xhtml#a44d2c2cd4db4eade34cac95f5916a2a0',·1,·'gmx::Selection']]],
173 ····['mappedunionfinder_124',·['MappedUnionFinder',·['../classgmx_1_1MappedUnionFinder.xhtml',·1,·'gmx']]],173 ····['mappedunionfinder_124',·['MappedUnionFinder',·['../classgmx_1_1MappedUnionFinder.xhtml',·1,·'gmx']]],
 174 ····['mapping_125',·['mapping',·['../classgmx_1_1layout__right_1_1mapping.xhtml',·1,·'gmx::layout_right::mapping&lt;·Extents·&gt;'],
174 ····['mapping_125',·['mapping',·['../classgmx_1_1layout__right_1_1mapping.xhtml#ad632683c77288c28df614ea7915917ce',·1,·'gmx::layout_right::mapping::mapping()'],175 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#ad632683c77288c28df614ea7915917ce',·1,·'gmx::layout_right::mapping::mapping()'],
 176 ········['../classgmx_1_1basic__mdspan.xhtml#a02c710cacde0166f1c5f4c67b9971cee',·1,·'gmx::basic_mdspan::mapping()'],
175 ········['../classgmx_1_1layout__right_1_1mapping.xhtml',·1,·'gmx::layout_right::mapping&lt;·Extents·&gt;'], 
176 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#a80905ecdaf35273d7f7c303e7d2ff909',·1,·'gmx::layout_right::mapping::mapping()·noexcept=default'], 
177 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#afc7b2299be673f6d37d0a570e061da72',·1,·'gmx::layout_right::mapping::mapping(mapping·&amp;&amp;)·noexcept=default'], 
178 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#a7aa3312a770a6a3946d60a7e23cb2002',·1,·'gmx::layout_right::mapping::mapping(const·Extents·&amp;ext)·noexcept'],177 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#a7aa3312a770a6a3946d60a7e23cb2002',·1,·'gmx::layout_right::mapping::mapping(const·Extents·&amp;ext)·noexcept'],
179 ········['../classgmx_1_1basic__mdspan.xhtml#a02c710cacde0166f1c5f4c67b9971cee',·1,·'gmx::basic_mdspan::mapping()·const·noexcept']178 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#afc7b2299be673f6d37d0a570e061da72',·1,·'gmx::layout_right::mapping::mapping(mapping·&amp;&amp;)·noexcept=default'],
 179 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#a80905ecdaf35273d7f7c303e7d2ff909',·1,·'gmx::layout_right::mapping::mapping()·noexcept=default']
180 ····]],180 ····]],
181 ····['mapping_5ftype_126',·['mapping_type',·['../classgmx_1_1basic__mdspan.xhtml#a41c0126e07c9b922b4b838b578af7888',·1,·'gmx::basic_mdspan']]],181 ····['mapping_5ftype_126',·['mapping_type',·['../classgmx_1_1basic__mdspan.xhtml#a41c0126e07c9b922b4b838b578af7888',·1,·'gmx::basic_mdspan']]],
182 ····['maptoframeatoms_5f_127',·['mapToFrameAtoms_',·['../classgmx_1_1PositionCalculationCollection_1_1Impl.xhtml#a028b638ac6bf4c5c76f4c78819d94cff',·1,·'gmx::PositionCalculationCollection::Impl']]],182 ····['maptoframeatoms_5f_127',·['mapToFrameAtoms_',·['../classgmx_1_1PositionCalculationCollection_1_1Impl.xhtml#a028b638ac6bf4c5c76f4c78819d94cff',·1,·'gmx::PositionCalculationCollection::Impl']]],
183 ····['maptype_128',·['MapType',·['../classgmx_1_1EnergyFrame.xhtml#ae7cbc6aabfeacd2447563d8f137045f4',·1,·'gmx::EnergyFrame']]],183 ····['maptype_128',·['MapType',·['../classgmx_1_1EnergyFrame.xhtml#ae7cbc6aabfeacd2447563d8f137045f4',·1,·'gmx::EnergyFrame']]],
184 ····['mark_5fsubexpr_5fdynamic_129',·['mark_subexpr_dynamic',·['../compiler_8cpp.xhtml#a2ce676e6caff3877910cd9cfc27cb955',·1,·'compiler.cpp']]],184 ····['mark_5fsubexpr_5fdynamic_129',·['mark_subexpr_dynamic',·['../compiler_8cpp.xhtml#a2ce676e6caff3877910cd9cfc27cb955',·1,·'compiler.cpp']]],
185 ····['mark_5fsurface_5fcovered_130',·['mark_surface_covered',·['../sm__insolidangle_8cpp.xhtml#ad016ba6ae3e4a77948222f08f4004e4f',·1,·'sm_insolidangle.cpp']]],185 ····['mark_5fsurface_5fcovered_130',·['mark_surface_covered',·['../sm__insolidangle_8cpp.xhtml#ad016ba6ae3e4a77948222f08f4004e4f',·1,·'sm_insolidangle.cpp']]],
186 ····['markasreadytoreduce_131',·['markAsReadyToReduce',·['../classgmx_1_1ObservablesReducer.xhtml#aa76fb912aca1c30275e567685626f515',·1,·'gmx::ObservablesReducer']]],186 ····['markasreadytoreduce_131',·['markAsReadyToReduce',·['../classgmx_1_1ObservablesReducer.xhtml#aa76fb912aca1c30275e567685626f515',·1,·'gmx::ObservablesReducer']]],
Offset 754, 16 lines modifiedOffset 754, 16 lines modified
754 ········['../classgmx_1_1MrcDensityMapOfFloatReader.xhtml',·1,·'gmx::MrcDensityMapOfFloatReader']754 ········['../classgmx_1_1MrcDensityMapOfFloatReader.xhtml',·1,·'gmx::MrcDensityMapOfFloatReader']
755 ····]],755 ····]],
756 ····['mrcdensitymapoffloatwriter_469',·['mrcdensitymapoffloatwriter',·['../classgmx_1_1MrcDensityMapOfFloatWriter.xhtml#aaed6893c7ae8d1df0d7950d0d22e2d03',·1,·'gmx::MrcDensityMapOfFloatWriter::MrcDensityMapOfFloatWriter()'],756 ····['mrcdensitymapoffloatwriter_469',·['mrcdensitymapoffloatwriter',·['../classgmx_1_1MrcDensityMapOfFloatWriter.xhtml#aaed6893c7ae8d1df0d7950d0d22e2d03',·1,·'gmx::MrcDensityMapOfFloatWriter::MrcDensityMapOfFloatWriter()'],
757 ········['../classgmx_1_1MrcDensityMapOfFloatWriter.xhtml',·1,·'gmx::MrcDensityMapOfFloatWriter']757 ········['../classgmx_1_1MrcDensityMapOfFloatWriter.xhtml',·1,·'gmx::MrcDensityMapOfFloatWriter']
758 ····]],758 ····]],
759 ····['mrcdensityskewdata_470',·['MrcDensitySkewData',·['../structgmx_1_1MrcDensitySkewData.xhtml',·1,·'gmx']]],759 ····['mrcdensityskewdata_470',·['MrcDensitySkewData',·['../structgmx_1_1MrcDensitySkewData.xhtml',·1,·'gmx']]],
760 ····['mrcheaderissane_471',·['mrcHeaderIsSane',·['../namespacegmx.xhtml#ae0952e5f8ebf3384064550e3a74596f2',·1,·'gmx']]],760 ····['mrcheaderissane_471',·['mrcHeaderIsSane',·['../namespacegmx.xhtml#ae0952e5f8ebf3384064550e3a74596f2',·1,·'gmx']]],
761 ····['mrcserializer_2ecpp_472',·['mrcserializer.cpp',·['../mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)'],761 ····['mrcserializer_2ecpp_472',·['mrcserializer.cpp',·['../tests_2mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)'],
762 ········['../tests_2mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)']762 ········['../mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)']
763 ····]],763 ····]],
764 ····['mrcserializer_2eh_473',·['mrcserializer.h',·['../mrcserializer_8h.xhtml',·1,·'']]],764 ····['mrcserializer_2eh_473',·['mrcserializer.h',·['../mrcserializer_8h.xhtml',·1,·'']]],
765 ····['mrcunitstonm_474',·['mrcUnitsToNm',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a2c88f65071129ab9ec7530cc3ce4458c',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],765 ····['mrcunitstonm_474',·['mrcUnitsToNm',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a2c88f65071129ab9ec7530cc3ce4458c',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
766 ····['ms_475',·['ms',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#a0dca275a1044093cee09ab07b74262c8',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]],766 ····['ms_475',·['ms',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#a0dca275a1044093cee09ab07b74262c8',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]],
767 ····['ms_5f_476',·['ms_',·['../classgmx_1_1LegacySimulatorData.xhtml#a44fde7ee1ab975eac60d5232f7d8e023',·1,·'gmx::LegacySimulatorData']]],767 ····['ms_5f_476',·['ms_',·['../classgmx_1_1LegacySimulatorData.xhtml#a44fde7ee1ab975eac60d5232f7d8e023',·1,·'gmx::LegacySimulatorData']]],
768 ····['msd_477',·['Msd',·['../classgmx_1_1analysismodules_1_1Msd.xhtml',·1,·'gmx::analysismodules']]],768 ····['msd_477',·['Msd',·['../classgmx_1_1analysismodules_1_1Msd.xhtml',·1,·'gmx::analysismodules']]],
769 ····['msd_2ecpp_478',·['msd.cpp',·['../modules_2msd_8cpp.xhtml',·1,·'(Global·Namespace)'],769 ····['msd_2ecpp_478',·['msd.cpp',·['../modules_2msd_8cpp.xhtml',·1,·'(Global·Namespace)'],
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460 ········['../namespacegmx.xhtml#a63cf11bdf7c50436e7a754d50689f362a6adf97f83acf6453d4a6a4b1070f3754',·1,·'gmx::None'],460 ········['../namespacegmx.xhtml#a63cf11bdf7c50436e7a754d50689f362a6adf97f83acf6453d4a6a4b1070f3754',·1,·'gmx::None'],
461 ········['../namespacegmx.xhtml#abab20f57d9df210c6b3f6384c54f7212a6adf97f83acf6453d4a6a4b1070f3754',·1,·'gmx::None'],461 ········['../namespacegmx.xhtml#abab20f57d9df210c6b3f6384c54f7212a6adf97f83acf6453d4a6a4b1070f3754',·1,·'gmx::None'],
462 ········['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0ca6adf97f83acf6453d4a6a4b1070f3754',·1,·'gmx::None'],462 ········['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0ca6adf97f83acf6453d4a6a4b1070f3754',·1,·'gmx::None'],
463 ········['../namespacegmx.xhtml#a35a656f58d79c7258c8b6e0141bd440ba6adf97f83acf6453d4a6a4b1070f3754',·1,·'gmx::None']463 ········['../namespacegmx.xhtml#a35a656f58d79c7258c8b6e0141bd440ba6adf97f83acf6453d4a6a4b1070f3754',·1,·'gmx::None']
464 ····]],464 ····]],
465 ····['nonexistent_286',·['Nonexistent',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888a4ae5e9809862b352a35922a5bcb1bdf3',·1,·'device_information.h']]],465 ····['nonexistent_286',·['Nonexistent',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888a4ae5e9809862b352a35922a5bcb1bdf3',·1,·'device_information.h']]],
466 ····['nonfunctional_287',·['NonFunctional',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888a836c1376187303303ffb10b26f2a4422',·1,·'device_information.h']]],466 ····['nonfunctional_287',·['NonFunctional',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888a836c1376187303303ffb10b26f2a4422',·1,·'device_information.h']]],
467 ····['nonlinear_288',·['nonlinear',·['../namespacegmx.xhtml#a63cf11bdf7c50436e7a754d50689f362a47e3d35ab4249db25f1467971d8aba21',·1,·'gmx::NonLinear'], 
468 ········['../classgmx_1_1VirtualSitesHandler.xhtml#a9bc9f8f9c0f9558d09bf4b5ed0273e3ba47e3d35ab4249db25f1467971d8aba21',·1,·'gmx::VirtualSitesHandler::NonLinear']467 ····['nonlinear_288',·['nonlinear',·['../classgmx_1_1VirtualSitesHandler.xhtml#a9bc9f8f9c0f9558d09bf4b5ed0273e3ba47e3d35ab4249db25f1467971d8aba21',·1,·'gmx::VirtualSitesHandler::NonLinear'],
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469 ····]],469 ····]],
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472 ····]],472 ····]],
473 ····['nonlocal_5fdone_290',·['nonlocal_done',·['../structNbnxmGpu.xhtml#a7c7aea1f8edd8460d24b4a36d07f1984',·1,·'NbnxmGpu']]],473 ····['nonlocal_5fdone_290',·['nonlocal_done',·['../structNbnxmGpu.xhtml#a7c7aea1f8edd8460d24b4a36d07f1984',·1,·'NbnxmGpu']]],
474 ····['nooptionaloutput_291',·['NoOptionalOutput',·['../classgmx_1_1test_1_1NoOptionalOutput.xhtml',·1,·'gmx::test']]],474 ····['nooptionaloutput_291',·['NoOptionalOutput',·['../classgmx_1_1test_1_1NoOptionalOutput.xhtml',·1,·'gmx::test']]],
475 ····['nopbcjumps_292',·['NoPBCJumps',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a3c9450d09d1b92477398f1a26bbb11bf',·1,·'gmx']]],475 ····['nopbcjumps_292',·['NoPBCJumps',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a3c9450d09d1b92477398f1a26bbb11bf',·1,·'gmx']]],
476 ····['norder_293',·['nOrder',·['../classgmx_1_1Lincs.xhtml#a916d6e0a08223001ef38a5b74043ab38',·1,·'gmx::Lincs']]],476 ····['norder_293',·['nOrder',·['../classgmx_1_1Lincs.xhtml#a916d6e0a08223001ef38a5b74043ab38',·1,·'gmx::Lincs']]],
477 ····['norm_294',·['norm',·['../namespacegmx.xhtml#ac4968e669f258a20e94e885b49ef2934',·1,·'gmx::norm()'], 
478 ········['../classgmx_1_1BasicVector.xhtml#aad63bfd2384a9d1f876b925ee95de1dc',·1,·'gmx::BasicVector::norm()'],477 ····['norm_294',·['norm',·['../classgmx_1_1BasicVector.xhtml#aad63bfd2384a9d1f876b925ee95de1dc',·1,·'gmx::BasicVector::norm()'],
 478 ········['../namespacegmx.xhtml#ac4968e669f258a20e94e885b49ef2934',·1,·'gmx::norm(BasicVector&lt;·ValueType·&gt;·v)'],
479 ········['../namespacegmx.xhtml#abfc89b990a48f86125d9437b6050be46',·1,·'gmx::norm(T·*v)']479 ········['../namespacegmx.xhtml#abfc89b990a48f86125d9437b6050be46',·1,·'gmx::norm(T·*v)']
480 ····]],480 ····]],
481 ····['norm2_295',·['norm2',·['../namespacegmx.xhtml#a9e1713a0b402535e1f59ebd7cf4d1b5b',·1,·'gmx::norm2()'],481 ····['norm2_295',·['norm2',·['../namespacegmx.xhtml#a9e1713a0b402535e1f59ebd7cf4d1b5b',·1,·'gmx::norm2()'],
482 ········['../classgmx_1_1BasicVector.xhtml#aac10162bd5e4aeae070a245d55404164',·1,·'gmx::BasicVector::norm2()']482 ········['../classgmx_1_1BasicVector.xhtml#aac10162bd5e4aeae070a245d55404164',·1,·'gmx::BasicVector::norm2()']
483 ····]],483 ····]],
484 ····['norm_5fand_5fscale_5fvectors_296',·['norm_and_scale_vectors',·['../autocorr_8cpp.xhtml#ae225e0667d9a6856ba697f31ecc40ade',·1,·'autocorr.cpp']]],484 ····['norm_5fand_5fscale_5fvectors_296',·['norm_and_scale_vectors',·['../autocorr_8cpp.xhtml#ae225e0667d9a6856ba697f31ecc40ade',·1,·'autocorr.cpp']]],
485 ····['normal_297',·['Normal',·['../device__stream_8h.xhtml#a745c3a25d092600ae45b68d7e73d8319a960b44c579bc2f6818d2daaf9e4c16f0',·1,·'device_stream.h']]],485 ····['normal_297',·['Normal',·['../device__stream_8h.xhtml#a745c3a25d092600ae45b68d7e73d8319a960b44c579bc2f6818d2daaf9e4c16f0',·1,·'device_stream.h']]],
486 ····['normaldistribution_298',·['normaldistribution',·['../classgmx_1_1NormalDistribution.xhtml#a96caccdbb3d6390fcb152f6f6a38a2e1',·1,·'gmx::NormalDistribution::NormalDistribution(result_type·mean=0.0,·result_type·stddev=1.0)'],486 ····['normaldistribution_298',·['normaldistribution',·['../structUmbrellaOptions.xhtml#a473f1363f6af80b169a66c49e0806794',·1,·'UmbrellaOptions::normalDistribution'],
487 ········['../classgmx_1_1NormalDistribution.xhtml#a06215348b437434202cda73d44de8c99',·1,·'gmx::NormalDistribution::NormalDistribution(const·param_type·&amp;param)'],487 ········['../classgmx_1_1NormalDistribution.xhtml#a06215348b437434202cda73d44de8c99',·1,·'gmx::NormalDistribution::NormalDistribution()'],
488 ········['../classgmx_1_1NormalDistribution.xhtml',·1,·'gmx::NormalDistribution&lt;·RealType·&gt;'],488 ········['../classgmx_1_1NormalDistribution.xhtml',·1,·'gmx::NormalDistribution&lt;·RealType·&gt;'],
489 ········['../structUmbrellaOptions.xhtml#a473f1363f6af80b169a66c49e0806794',·1,·'UmbrellaOptions::normalDistribution']489 ········['../classgmx_1_1NormalDistribution.xhtml#a96caccdbb3d6390fcb152f6f6a38a2e1',·1,·'gmx::NormalDistribution::NormalDistribution()']
490 ····]],490 ····]],
491 ····['normaldistribution_2ecpp_299',·['normaldistribution.cpp',·['../normaldistribution_8cpp.xhtml',·1,·'']]],491 ····['normaldistribution_2ecpp_299',·['normaldistribution.cpp',·['../normaldistribution_8cpp.xhtml',·1,·'']]],
492 ····['normaldistribution_2eh_300',·['normaldistribution.h',·['../normaldistribution_8h.xhtml',·1,·'']]],492 ····['normaldistribution_2eh_300',·['normaldistribution.h',·['../normaldistribution_8h.xhtml',·1,·'']]],
493 ····['normalization_301',·['normalization',·['../namespacegmx.xhtml#a35a656f58d79c7258c8b6e0141bd440b',·1,·'gmx::Normalization'], 
494 ········['../group__module__trajectoryanalysis.xhtml#ga8dc818a96d0962c8bcb8f3c080d565c8',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}::Normalization']493 ····['normalization_301',·['normalization',·['../group__module__trajectoryanalysis.xhtml#ga8dc818a96d0962c8bcb8f3c080d565c8',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}::Normalization'],
 494 ········['../namespacegmx.xhtml#a35a656f58d79c7258c8b6e0141bd440b',·1,·'gmx::Normalization']
495 ····]],495 ····]],
496 ····['normalizationtype_5f_302',·['normalizationType_',·['../classgmx_1_1AwhEnergyBlock.xhtml#a13a7cdfa3b51a59d927b3a6dc101bb48',·1,·'gmx::AwhEnergyBlock']]],496 ····['normalizationtype_5f_302',·['normalizationType_',·['../classgmx_1_1AwhEnergyBlock.xhtml#a13a7cdfa3b51a59d927b3a6dc101bb48',·1,·'gmx::AwhEnergyBlock']]],
497 ····['normalizationvalue_5f_303',·['normalizationValue_',·['../classgmx_1_1AwhEnergyBlock.xhtml#ad7c3727d885b1c8276f38bcb8d770dd4',·1,·'gmx::AwhEnergyBlock']]],497 ····['normalizationvalue_5f_303',·['normalizationValue_',·['../classgmx_1_1AwhEnergyBlock.xhtml#ad7c3727d885b1c8276f38bcb8d770dd4',·1,·'gmx::AwhEnergyBlock']]],
498 ····['normalize_5facf_304',·['normalize_acf',·['../autocorr_8cpp.xhtml#a415d5aa1ec90e0366c9754df28f3e180',·1,·'autocorr.cpp']]],498 ····['normalize_5facf_304',·['normalize_acf',·['../autocorr_8cpp.xhtml#a415d5aa1ec90e0366c9754df28f3e180',·1,·'autocorr.cpp']]],
499 ····['normalizeblock_305',·['normalizeBlock',·['../namespacegmx.xhtml#a70bac9d01a06d35dc45d86a6bdba4f06',·1,·'gmx']]],499 ····['normalizeblock_305',·['normalizeBlock',·['../namespacegmx.xhtml#a70bac9d01a06d35dc45d86a6bdba4f06',·1,·'gmx']]],
500 ····['normalizedensities_5f_306',·['normalizeDensities_',·['../structgmx_1_1DensityFittingParameters.xhtml#a108b0f7f69ade1010f60a941430e1434',·1,·'gmx::DensityFittingParameters']]],500 ····['normalizedensities_5f_306',·['normalizeDensities_',·['../structgmx_1_1DensityFittingParameters.xhtml#a108b0f7f69ade1010f60a941430e1434',·1,·'gmx::DensityFittingParameters']]],
501 ····['normalizefreeenergyandpmfsum_307',·['normalizefreeenergyandpmfsum',·['../namespacegmx.xhtml#ac1a9213632dd1a11d0ad5eb64eb211cc',·1,·'gmx::normalizeFreeEnergyAndPmfSum()'],501 ····['normalizefreeenergyandpmfsum_307',·['normalizefreeenergyandpmfsum',·['../namespacegmx.xhtml#ac1a9213632dd1a11d0ad5eb64eb211cc',·1,·'gmx::normalizeFreeEnergyAndPmfSum()'],
502 ········['../classgmx_1_1PointState.xhtml#a9734176eb05174d67c84c4f6c1d44a6d',·1,·'gmx::PointState::normalizeFreeEnergyAndPmfSum()']502 ········['../classgmx_1_1PointState.xhtml#a9734176eb05174d67c84c4f6c1d44a6d',·1,·'gmx::PointState::normalizeFreeEnergyAndPmfSum()']
503 ····]],503 ····]],
504 ····['normalizeprobability_308',·['normalizeProbability',·['../classgmx_1_1AbstractAverageHistogram.xhtml#abc1ff464523654b5de9dd88ee7c036b4',·1,·'gmx::AbstractAverageHistogram']]],504 ····['normalizeprobability_308',·['normalizeProbability',·['../classgmx_1_1AbstractAverageHistogram.xhtml#abc1ff464523654b5de9dd88ee7c036b4',·1,·'gmx::AbstractAverageHistogram']]],
505 ····['normalizereferencedensity_309',·['normalizeReferenceDensity',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#aba089e24c17d4a809955ccb7fbcadd74',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup']]],505 ····['normalizereferencedensity_309',·['normalizeReferenceDensity',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#aba089e24c17d4a809955ccb7fbcadd74',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup']]],
506 ····['normalizesumpositivevaluestounity_310',·['normalizeSumPositiveValuesToUnity',·['../namespacegmx.xhtml#a327f10cbb6dad34a7a108b93d3f5d4e1',·1,·'gmx']]],506 ····['normalizesumpositivevaluestounity_310',·['normalizeSumPositiveValuesToUnity',·['../namespacegmx.xhtml#a327f10cbb6dad34a7a108b93d3f5d4e1',·1,·'gmx']]],
 507 ····['normalizevalue_311',·['normalizevalue',·['../classgmx_1_1EnumOptionStorage.xhtml#a714ef64c0797beedd1ffe8193b7b35a8',·1,·'gmx::EnumOptionStorage::normalizeValue()'],
507 ····['normalizevalue_311',·['normalizevalue',·['../classgmx_1_1OptionStorageTemplateSimple.xhtml#a7b800b3a96308ce591b6ae34cf5817b6',·1,·'gmx::OptionStorageTemplateSimple::normalizeValue()'],508 ········['../classgmx_1_1OptionStorageTemplateSimple.xhtml#a7b800b3a96308ce591b6ae34cf5817b6',·1,·'gmx::OptionStorageTemplateSimple::normalizeValue()']
508 ········['../classgmx_1_1EnumOptionStorage.xhtml#a714ef64c0797beedd1ffe8193b7b35a8',·1,·'gmx::EnumOptionStorage::normalizeValue()'] 
509 ····]],509 ····]],
 510 ····['normalizevalues_312',·['normalizevalues',·['../classanonymous__namespace_02abstractoptionstorage_8cpp_03_1_1MockOptionStorage.xhtml#a41d05ec823b0c59328fe0272416509cf',·1,·'anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage::normalizeValues()'],
510 ····['normalizevalues_312',·['normalizevalues',·['../classgmx_1_1OptionInfo.xhtml#afa99b6a8d6f5e06151d7f3b0f8817cfa',·1,·'gmx::OptionInfo::normalizeValues()'],511 ········['../classgmx_1_1OptionInfo.xhtml#afa99b6a8d6f5e06151d7f3b0f8817cfa',·1,·'gmx::OptionInfo::normalizeValues()'],
 512 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a238bb8bb4773156da77fc2828453773e',·1,·'gmx::AbstractOptionStorage::normalizeValues()'],
511 ········['../classgmx_1_1SelectionOptionStorage.xhtml#acfb88582bb18c5a1876b8299e3097bc3',·1,·'gmx::SelectionOptionStorage::normalizeValues()'],513 ········['../classgmx_1_1SelectionOptionStorage.xhtml#acfb88582bb18c5a1876b8299e3097bc3',·1,·'gmx::SelectionOptionStorage::normalizeValues()'],
512 ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#a3ae5bffb43f83750b8784665cafed6c2',·1,·'gmx::SelectionFileOptionStorage::normalizeValues()'],514 ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#a3ae5bffb43f83750b8784665cafed6c2',·1,·'gmx::SelectionFileOptionStorage::normalizeValues()'],
513 ········['../classanonymous__namespace_02abstractoptionstorage_8cpp_03_1_1MockOptionStorage.xhtml#a41d05ec823b0c59328fe0272416509cf',·1,·'anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage::normalizeValues()'], 
514 ········['../classgmx_1_1OptionStorageTemplateSimple.xhtml#a24fb31501a4f2bcc6b4f8f4308b9737c',·1,·'gmx::OptionStorageTemplateSimple::normalizeValues()'],515 ········['../classgmx_1_1OptionStorageTemplateSimple.xhtml#a24fb31501a4f2bcc6b4f8f4308b9737c',·1,·'gmx::OptionStorageTemplateSimple::normalizeValues()']
515 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a238bb8bb4773156da77fc2828453773e',·1,·'gmx::AbstractOptionStorage::normalizeValues()'] 
516 ····]],516 ····]],
517 ····['normalmodes_2ecpp_313',·['normalmodes.cpp',·['../normalmodes_8cpp.xhtml',·1,·'']]],517 ····['normalmodes_2ecpp_313',·['normalmodes.cpp',·['../normalmodes_8cpp.xhtml',·1,·'']]],
518 ····['normalmodestest_314',·['NormalModesTest',·['../classgmx_1_1test_1_1anonymous__namespace_02normalmodes_8cpp_03_1_1NormalModesTest.xhtml',·1,·'gmx::test::anonymous_namespace{normalmodes.cpp}']]],518 ····['normalmodestest_314',·['NormalModesTest',·['../classgmx_1_1test_1_1anonymous__namespace_02normalmodes_8cpp_03_1_1NormalModesTest.xhtml',·1,·'gmx::test::anonymous_namespace{normalmodes.cpp}']]],
519 ····['nosehoover_5fvxi_315',·['nosehoover_vxi',·['../classt__state.xhtml#a349969aa77c689a1aa3d2a3f903ad2b3',·1,·'t_state::nosehoover_vxi'],519 ····['nosehoover_5fvxi_315',·['nosehoover_vxi',·['../classt__state.xhtml#a349969aa77c689a1aa3d2a3f903ad2b3',·1,·'t_state::nosehoover_vxi'],
520 ········['../structgmx_1_1PTCouplingArrays.xhtml#a6af6f95f1d4a30e290f6b724f0a313af',·1,·'gmx::PTCouplingArrays::nosehoover_vxi']520 ········['../structgmx_1_1PTCouplingArrays.xhtml#a6af6f95f1d4a30e290f6b724f0a313af',·1,·'gmx::PTCouplingArrays::nosehoover_vxi']
521 ····]],521 ····]],
522 ····['nosehoover_5fxi_316',·['nosehoover_xi',·['../structgmx_1_1PTCouplingArrays.xhtml#a611790ef9fc3907feed3c81b1c29b1db',·1,·'gmx::PTCouplingArrays::nosehoover_xi'],522 ····['nosehoover_5fxi_316',·['nosehoover_xi',·['../structgmx_1_1PTCouplingArrays.xhtml#a611790ef9fc3907feed3c81b1c29b1db',·1,·'gmx::PTCouplingArrays::nosehoover_xi'],
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9 ····['p1_1',·['p1',·['../namespacegmx.xhtml#a6e4ce54343e36af1edaf514bd298959fa5f2b9323c39ee3c861a7b382d205c3d3',·1,·'gmx::P1'],10 ········['../namespacegmx.xhtml#a6e4ce54343e36af1edaf514bd298959fa5f2b9323c39ee3c861a7b382d205c3d3',·1,·'gmx::P1']
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13 ····['package_3',·['Package',·['../structgmx_1_1HardwareTopology_1_1Package.xhtml',·1,·'gmx::HardwareTopology']]],13 ····['package_3',·['Package',·['../structgmx_1_1HardwareTopology_1_1Package.xhtml',·1,·'gmx::HardwareTopology']]],
14 ····['packageidinmachine_4',·['packageIdInMachine',·['../structgmx_1_1CpuInfo_1_1LogicalProcessor.xhtml#a4f9fa92734944301901b1dcd85093254',·1,·'gmx::CpuInfo::LogicalProcessor']]],14 ····['packageidinmachine_4',·['packageIdInMachine',·['../structgmx_1_1CpuInfo_1_1LogicalProcessor.xhtml#a4f9fa92734944301901b1dcd85093254',·1,·'gmx::CpuInfo::LogicalProcessor']]],
15 ····['packagerankintopology_5',·['packageRankInTopology',·['../structgmx_1_1HardwareTopology_1_1LogicalProcessor.xhtml#a1b9ad69ea5aa8aca7f5595c889df2e7c',·1,·'gmx::HardwareTopology::LogicalProcessor']]],15 ····['packagerankintopology_5',·['packageRankInTopology',·['../structgmx_1_1HardwareTopology_1_1LogicalProcessor.xhtml#a1b9ad69ea5aa8aca7f5595c889df2e7c',·1,·'gmx::HardwareTopology::LogicalProcessor']]],
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17 ····['packed_20j_20clusters_20of_20warps_7',·['of·packed·j·clusters·*·#·of·warps',·['../structNbnxm_1_1gpu__plist.xhtml#autotoc_md108',·1,·'']]],17 ····['packed_20j_20clusters_20of_20warps_7',·['of·packed·j·clusters·*·#·of·warps',·['../structNbnxm_1_1gpu__plist.xhtml#autotoc_md108',·1,·'']]],
18 ····['packedboundingboxes_8',·['packedBoundingBoxes',·['../classNbnxm_1_1Grid.xhtml#a353b04469531e9ab020abdd48aa0e351',·1,·'Nbnxm::Grid']]],18 ····['packedboundingboxes_8',·['packedBoundingBoxes',·['../classNbnxm_1_1Grid.xhtml#a353b04469531e9ab020abdd48aa0e351',·1,·'Nbnxm::Grid']]],
19 ····['packedjclusterlist_9',·['PackedJClusterList',·['../classPackedJClusterList.xhtml',·1,·'']]],19 ····['packedjclusterlist_9',·['PackedJClusterList',·['../classPackedJClusterList.xhtml',·1,·'']]],
20 ····['packhaloexternal_10',·['PackHaloExternal',·['../classPackHaloExternal.xhtml',·1,·'']]],20 ····['packhaloexternal_10',·['PackHaloExternal',·['../classPackHaloExternal.xhtml',·1,·'']]],
21 ····['packhalointernal_11',·['PackHaloInternal',·['../classPackHaloInternal.xhtml',·1,·'']]],21 ····['packhalointernal_11',·['PackHaloInternal',·['../classPackHaloInternal.xhtml',·1,·'']]],
22 ····['paddedarrayref_12',·['paddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#af96cdc4e2ae79fc9e3de0a7ac3291b1f',·1,·'gmx::ArrayRefWithPadding']]],22 ····['paddedarrayref_12',·['paddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#af96cdc4e2ae79fc9e3de0a7ac3291b1f',·1,·'gmx::ArrayRefWithPadding']]],
23 ····['paddedconstarrayref_13',·['paddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a3b87c53ddcde85eccd59b62fafc2fec3',·1,·'gmx::ArrayRefWithPadding']]],23 ····['paddedconstarrayref_13',·['paddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a3b87c53ddcde85eccd59b62fafc2fec3',·1,·'gmx::ArrayRefWithPadding']]],
 24 ····['paddedhostvector_14',·['paddedhostvector',·['../namespacegmx.xhtml#a5ec47a61b30ffcc249cc27ae5ea47da8',·1,·'gmx::PaddedHostVector'],
24 ····['paddedhostvector_14',·['paddedhostvector',·['../state_8h.xhtml#ac8c51716c19f5f58463e856c19b39acb',·1,·'PaddedHostVector:&#160;state.h'],25 ········['../state_8h.xhtml#ac8c51716c19f5f58463e856c19b39acb',·1,·'PaddedHostVector:&#160;state.h']
25 ········['../namespacegmx.xhtml#a5ec47a61b30ffcc249cc27ae5ea47da8',·1,·'gmx::PaddedHostVector'] 
26 ····]],26 ····]],
27 ····['paddednumatomsincolumn_15',·['paddedNumAtomsInColumn',·['../classNbnxm_1_1Grid.xhtml#a95f443a30f4a01b8cb23197a95e51443',·1,·'Nbnxm::Grid']]],27 ····['paddednumatomsincolumn_15',·['paddedNumAtomsInColumn',·['../classNbnxm_1_1Grid.xhtml#a95f443a30f4a01b8cb23197a95e51443',·1,·'Nbnxm::Grid']]],
28 ····['paddedsize_16',·['paddedSize',·['../classgmx_1_1PaddedVector.xhtml#aa3d1b552af6106d1bb61426b4605add3',·1,·'gmx::PaddedVector']]],28 ····['paddedsize_16',·['paddedSize',·['../classgmx_1_1PaddedVector.xhtml#aa3d1b552af6106d1bb61426b4605add3',·1,·'gmx::PaddedVector']]],
 29 ····['paddedvector_17',·['paddedvector',·['../classgmx_1_1PaddedVector.xhtml#aae517037a7e2a04806a72deffe661437',·1,·'gmx::PaddedVector::PaddedVector(std::initializer_list&lt;·value_type·&gt;·const·&amp;il)'],
29 ····['paddedvector_17',·['paddedvector',·['../classgmx_1_1PaddedVector.xhtml#ae8d292225db685d912d5be8f26d32d2d',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·const·allocator_type·&amp;allocator=Allocator())'],30 ········['../classgmx_1_1PaddedVector.xhtml#ae8d292225db685d912d5be8f26d32d2d',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·const·allocator_type·&amp;allocator=Allocator())'],
 31 ········['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx::PaddedVector&lt;·T,·Allocator·&gt;'],
30 ········['../classgmx_1_1PaddedVector.xhtml#ac090f26229cc0e5ca4cf4f70d500dd9e',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·value_type·const·&amp;v,·const·allocator_type·&amp;allocator=Allocator())'],32 ········['../classgmx_1_1PaddedVector.xhtml#ac090f26229cc0e5ca4cf4f70d500dd9e',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·value_type·const·&amp;v,·const·allocator_type·&amp;allocator=Allocator())'],
31 ········['../classgmx_1_1PaddedVector.xhtml#a8a5f5975b2207677f1e956060b02c1d2',·1,·'gmx::PaddedVector::PaddedVector(allocator_type·const·&amp;allocator)'],33 ········['../classgmx_1_1PaddedVector.xhtml#a8a5f5975b2207677f1e956060b02c1d2',·1,·'gmx::PaddedVector::PaddedVector(allocator_type·const·&amp;allocator)'],
32 ········['../classgmx_1_1PaddedVector.xhtml#aae517037a7e2a04806a72deffe661437',·1,·'gmx::PaddedVector::PaddedVector(std::initializer_list&lt;·value_type·&gt;·const·&amp;il)'], 
33 ········['../classgmx_1_1PaddedVector.xhtml#a1455b09f0cb0dd2b5f6ff5b092ecea08',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·const·&amp;o)'],34 ········['../classgmx_1_1PaddedVector.xhtml#a1455b09f0cb0dd2b5f6ff5b092ecea08',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·const·&amp;o)'],
34 ········['../classgmx_1_1PaddedVector.xhtml#a99f036b6e7ea821ab24604474748c8f6',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o)·noexcept'],35 ········['../classgmx_1_1PaddedVector.xhtml#a99f036b6e7ea821ab24604474748c8f6',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o)·noexcept'],
35 ········['../classgmx_1_1PaddedVector.xhtml#af634e58ae15af112df64a6e9f42a5460',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o,·const·Allocator·&amp;alloc)·noexcept'],36 ········['../classgmx_1_1PaddedVector.xhtml#af634e58ae15af112df64a6e9f42a5460',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o,·const·Allocator·&amp;alloc)·noexcept']
36 ········['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx::PaddedVector&lt;·T,·Allocator·&gt;'] 
37 ····]],37 ····]],
38 ····['paddedvector_2ecpp_18',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]],38 ····['paddedvector_2ecpp_18',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]],
39 ····['paddedvector_2eh_19',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]],39 ····['paddedvector_2eh_19',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]],
40 ····['paddedvector_3c_20gmx_3a_3abasicvector_20_3e_20',·['PaddedVector&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],40 ····['paddedvector_3c_20gmx_3a_3abasicvector_20_3e_20',·['PaddedVector&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],
41 ····['paddedvector_3c_20real_20_3e_21',·['PaddedVector&lt;·real·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],41 ····['paddedvector_3c_20real_20_3e_21',·['PaddedVector&lt;·real·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],
42 ····['paddedvector_3c_20rvec_20_3e_22',·['PaddedVector&lt;·RVec·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],42 ····['paddedvector_3c_20rvec_20_3e_22',·['PaddedVector&lt;·RVec·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],
43 ····['paddedvectortest_23',·['PaddedVectorTest',·['../classgmx_1_1test_1_1PaddedVectorTest.xhtml',·1,·'gmx::test']]],43 ····['paddedvectortest_23',·['PaddedVectorTest',·['../classgmx_1_1test_1_1PaddedVectorTest.xhtml',·1,·'gmx::test']]],
Offset 84, 53 lines modifiedOffset 84, 53 lines modified
84 ····['pairlistset_2ecpp_51',·['pairlistset.cpp',·['../pairlistset_8cpp.xhtml',·1,·'']]],84 ····['pairlistset_2ecpp_51',·['pairlistset.cpp',·['../pairlistset_8cpp.xhtml',·1,·'']]],
85 ····['pairlistset_2eh_52',·['pairlistset.h',·['../pairlistset_8h.xhtml',·1,·'']]],85 ····['pairlistset_2eh_52',·['pairlistset.h',·['../pairlistset_8h.xhtml',·1,·'']]],
86 ····['pairlistsets_53',·['pairlistsets',·['../classPairlistSets.xhtml',·1,·'PairlistSets'],86 ····['pairlistsets_53',·['pairlistsets',·['../classPairlistSets.xhtml',·1,·'PairlistSets'],
87 ········['../classPairlistSets.xhtml#aff659b5683c9ee577e14d59d00d54633',·1,·'PairlistSets::PairlistSets()'],87 ········['../classPairlistSets.xhtml#aff659b5683c9ee577e14d59d00d54633',·1,·'PairlistSets::PairlistSets()'],
88 ········['../structnonbonded__verlet__t.xhtml#aa57ad98496e4e60d07e2f2ef32dd483d',·1,·'nonbonded_verlet_t::pairlistSets()']88 ········['../structnonbonded__verlet__t.xhtml#aa57ad98496e4e60d07e2f2ef32dd483d',·1,·'nonbonded_verlet_t::pairlistSets()']
89 ····]],89 ····]],
90 ····['pairlistsets_2eh_54',·['pairlistsets.h',·['../pairlistsets_8h.xhtml',·1,·'']]],90 ····['pairlistsets_2eh_54',·['pairlistsets.h',·['../pairlistsets_8h.xhtml',·1,·'']]],
91 ····['pairlisttype_55',·['pairlisttype',·['../structPairlistParams.xhtml#a75f3a17ab82a7f2507529b6f178a57ef',·1,·'PairlistParams::pairlistType'], 
92 ········['../pairlistparams_8h.xhtml#a624e06b7bd2338b346b59aba9650f6d0',·1,·'PairlistType:&#160;pairlistparams.h']91 ····['pairlisttype_55',·['pairlisttype',·['../pairlistparams_8h.xhtml#a624e06b7bd2338b346b59aba9650f6d0',·1,·'PairlistType:&#160;pairlistparams.h'],
 92 ········['../structPairlistParams.xhtml#a75f3a17ab82a7f2507529b6f178a57ef',·1,·'PairlistParams::pairlistType']
93 ····]],93 ····]],
94 ····['pairlistwork_2ecpp_56',·['pairlistwork.cpp',·['../pairlistwork_8cpp.xhtml',·1,·'']]],94 ····['pairlistwork_2ecpp_56',·['pairlistwork.cpp',·['../pairlistwork_8cpp.xhtml',·1,·'']]],
95 ····['pairlistwork_2eh_57',·['pairlistwork.h',·['../pairlistwork_8h.xhtml',·1,·'']]],95 ····['pairlistwork_2eh_57',·['pairlistwork.h',·['../pairlistwork_8h.xhtml',·1,·'']]],
96 ····['pairs_58',·['Pairs',·['../classListedForces.xhtml#a73e4fa54dfd332da42036d5ae893da47aa07a589a90362b3346324844a3ad87ff',·1,·'ListedForces']]],96 ····['pairs_58',·['Pairs',·['../classListedForces.xhtml#a73e4fa54dfd332da42036d5ae893da47aa07a589a90362b3346324844a3ad87ff',·1,·'ListedForces']]],
97 ····['pairs_2ecpp_59',·['pairs.cpp',·['../pairs_8cpp.xhtml',·1,·'(Global·Namespace)'],97 ····['pairs_2ecpp_59',·['pairs.cpp',·['../tests_2pairs_8cpp.xhtml',·1,·'(Global·Namespace)'],
98 ········['../tests_2pairs_8cpp.xhtml',·1,·'(Global·Namespace)']98 ········['../pairs_8cpp.xhtml',·1,·'(Global·Namespace)']
99 ····]],99 ····]],
100 ····['pairs_2eh_60',·['pairs.h',·['../pairs_8h.xhtml',·1,·'']]],100 ····['pairs_2eh_60',·['pairs.h',·['../pairs_8h.xhtml',·1,·'']]],
101 ····['pairsearch_61',·['pairsearch',·['../classPairSearch.xhtml',·1,·'PairSearch'], 
102 ········['../classPairSearch.xhtml#a65dadfe6bac46af5c17defee9a328a28',·1,·'PairSearch::PairSearch()']101 ····['pairsearch_61',·['pairsearch',·['../classPairSearch.xhtml#a65dadfe6bac46af5c17defee9a328a28',·1,·'PairSearch::PairSearch()'],
 102 ········['../classPairSearch.xhtml',·1,·'PairSearch']
103 ····]],103 ····]],
104 ····['pairsearch_2ecpp_62',·['pairsearch.cpp',·['../pairsearch_8cpp.xhtml',·1,·'']]],104 ····['pairsearch_2ecpp_62',·['pairsearch.cpp',·['../pairsearch_8cpp.xhtml',·1,·'']]],
105 ····['pairsearch_2eh_63',·['pairsearch.h',·['../pairsearch_8h.xhtml',·1,·'']]],105 ····['pairsearch_2eh_63',·['pairsearch.h',·['../pairsearch_8h.xhtml',·1,·'']]],
106 ····['pairsearchcoordinates_64',·['pairSearchCoordinates',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#af18643a5c0d8729b32e688d45fd7f8ca',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]],106 ····['pairsearchcoordinates_64',·['pairSearchCoordinates',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#af18643a5c0d8729b32e688d45fd7f8ca',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]],
107 ····['pairsearchwork_65',·['PairsearchWork',·['../structPairsearchWork.xhtml',·1,·'']]],107 ····['pairsearchwork_65',·['PairsearchWork',·['../structPairsearchWork.xhtml',·1,·'']]],
108 ····['paragraphbreak_66',·['paragraphBreak',·['../classgmx_1_1HelpWriterContext.xhtml#a6c24ca1470b3addda69ae236a6ea66b2',·1,·'gmx::HelpWriterContext']]],108 ····['paragraphbreak_66',·['paragraphBreak',·['../classgmx_1_1HelpWriterContext.xhtml#a6c24ca1470b3addda69ae236a6ea66b2',·1,·'gmx::HelpWriterContext']]],
109 ····['parallel_5f3dfft_5fexecute_5fgpu_5fwrapper_67',·['parallel_3dfft_execute_gpu_wrapper',·['../pme__gpu_8cpp.xhtml#a13b15b5d3a7003ff0dfdba02aadbc97e',·1,·'pme_gpu.cpp']]],109 ····['parallel_5f3dfft_5fexecute_5fgpu_5fwrapper_67',·['parallel_3dfft_execute_gpu_wrapper',·['../pme__gpu_8cpp.xhtml#a13b15b5d3a7003ff0dfdba02aadbc97e',·1,·'pme_gpu.cpp']]],
110 ····['parallelconsistencyerror_68',·['parallelconsistencyerror',·['../classgmx_1_1ParallelConsistencyError.xhtml#a30850fa25d3059fa861607dd0eb20bd2',·1,·'gmx::ParallelConsistencyError::ParallelConsistencyError()'],110 ····['parallelconsistencyerror_68',·['parallelconsistencyerror',·['../classgmx_1_1ParallelConsistencyError.xhtml#a30850fa25d3059fa861607dd0eb20bd2',·1,·'gmx::ParallelConsistencyError::ParallelConsistencyError()'],
111 ········['../classgmx_1_1ParallelConsistencyError.xhtml',·1,·'gmx::ParallelConsistencyError']111 ········['../classgmx_1_1ParallelConsistencyError.xhtml',·1,·'gmx::ParallelConsistencyError']
112 ····]],112 ····]],
113 ····['paralleldatastarted_69',·['paralleldatastarted',·['../classgmx_1_1AnalysisDataSimpleHistogramModule.xhtml#a3d06d76f51b9e41e945a997b21efd392',·1,·'gmx::AnalysisDataSimpleHistogramModule::parallelDataStarted()'],113 ····['paralleldatastarted_69',·['paralleldatastarted',·['../classgmx_1_1IAnalysisDataModule.xhtml#aeca0c095b7f31aec0f58643bed0e0895',·1,·'gmx::IAnalysisDataModule::parallelDataStarted()'],
 114 ········['../classgmx_1_1AnalysisDataProxy.xhtml#af4720264b81a508876c8e21731585ab0',·1,·'gmx::AnalysisDataProxy::parallelDataStarted()'],
114 ········['../classgmx_1_1AnalysisDataWeightedHistogramModule.xhtml#aef9b177d826d8afe625be7056ef2c607',·1,·'gmx::AnalysisDataWeightedHistogramModule::parallelDataStarted()'],115 ········['../classgmx_1_1AnalysisDataWeightedHistogramModule.xhtml#aef9b177d826d8afe625be7056ef2c607',·1,·'gmx::AnalysisDataWeightedHistogramModule::parallelDataStarted()'],
 116 ········['../classgmx_1_1AnalysisDataSimpleHistogramModule.xhtml#a3d06d76f51b9e41e945a997b21efd392',·1,·'gmx::AnalysisDataSimpleHistogramModule::parallelDataStarted()'],
115 ········['../classgmx_1_1AnalysisDataModuleParallel.xhtml#ae58dd25d11bc02bd4af8b7f36df62edf',·1,·'gmx::AnalysisDataModuleParallel::parallelDataStarted()'],117 ········['../classgmx_1_1AnalysisDataModuleParallel.xhtml#ae58dd25d11bc02bd4af8b7f36df62edf',·1,·'gmx::AnalysisDataModuleParallel::parallelDataStarted()']
116 ········['../classgmx_1_1IAnalysisDataModule.xhtml#aeca0c095b7f31aec0f58643bed0e0895',·1,·'gmx::IAnalysisDataModule::parallelDataStarted()'], 
117 ········['../classgmx_1_1AnalysisDataProxy.xhtml#af4720264b81a508876c8e21731585ab0',·1,·'gmx::AnalysisDataProxy::parallelDataStarted()'] 
118 ····]],118 ····]],
119 ····['parallelizable_20handling_20of_20output_20data_20analysisdata_70',·['Parallelizable·Handling·of·Output·Data·(analysisdata)',·['../group__module__analysisdata.xhtml',·1,·'']]],119 ····['parallelizable_20handling_20of_20output_20data_20analysisdata_70',·['Parallelizable·Handling·of·Output·Data·(analysisdata)',·['../group__module__analysisdata.xhtml',·1,·'']]],
120 ····['parallelization_71',·['Parallelization',·['../page_analysisdata.xhtml#section_analysisdata_parallelization',·1,·'']]],120 ····['parallelization_71',·['Parallelization',·['../page_analysisdata.xhtml#section_analysisdata_parallelization',·1,·'']]],
121 ····['parallelization_20over_20mpi_72',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],121 ····['parallelization_20over_20mpi_72',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],
122 ····['parallelizationfactor_73',·['parallelizationFactor',·['../classgmx_1_1AnalysisDataParallelOptions.xhtml#ad581353e29513839c7ab04f429f50b61',·1,·'gmx::AnalysisDataParallelOptions']]],122 ····['parallelizationfactor_73',·['parallelizationFactor',·['../classgmx_1_1AnalysisDataParallelOptions.xhtml#ad581353e29513839c7ab04f429f50b61',·1,·'gmx::AnalysisDataParallelOptions']]],
123 ····['paralleloptions_2eh_74',·['paralleloptions.h',·['../paralleloptions_8h.xhtml',·1,·'']]],123 ····['paralleloptions_2eh_74',·['paralleloptions.h',·['../paralleloptions_8h.xhtml',·1,·'']]],
124 ····['parallelselection_75',·['parallelSelection',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4e23dbf4cfd2554ac011664b49c1c7e0',·1,·'gmx::TrajectoryAnalysisModuleData']]],124 ····['parallelselection_75',·['parallelSelection',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4e23dbf4cfd2554ac011664b49c1c7e0',·1,·'gmx::TrajectoryAnalysisModuleData']]],
125 ····['parallelselections_76',·['parallelSelections',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4ffe3dec6ef34ae7e6af7a46b9fc7d0b',·1,·'gmx::TrajectoryAnalysisModuleData']]],125 ····['parallelselections_76',·['parallelSelections',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4ffe3dec6ef34ae7e6af7a46b9fc7d0b',·1,·'gmx::TrajectoryAnalysisModuleData']]],
126 ····['param_77',·['param',·['../classgmx_1_1NormalDistribution.xhtml#adaa8c7d5f4803f33e80d1811aa0af1f8',·1,·'gmx::NormalDistribution::param()'], 
127 ········['../classgmx_1_1UniformRealDistribution.xhtml#a267faab6d4cd2e017603fe0f73500c38',·1,·'gmx::UniformRealDistribution::param()'],126 ····['param_77',·['param',·['../classgmx_1_1UniformRealDistribution.xhtml#a267faab6d4cd2e017603fe0f73500c38',·1,·'gmx::UniformRealDistribution::param()'],
128 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#ace6c727298fe514a14a114f41d00e206',·1,·'gmx::TabulatedNormalDistribution::param()'],127 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#ace6c727298fe514a14a114f41d00e206',·1,·'gmx::TabulatedNormalDistribution::param()'],
129 ········['../classgmx_1_1UniformIntDistribution.xhtml#a843c35d5997b5075c35125a57cd6b937',·1,·'gmx::UniformIntDistribution::param()'],128 ········['../classgmx_1_1UniformIntDistribution.xhtml#a843c35d5997b5075c35125a57cd6b937',·1,·'gmx::UniformIntDistribution::param()'],
 129 ········['../classgmx_1_1NormalDistribution.xhtml#adaa8c7d5f4803f33e80d1811aa0af1f8',·1,·'gmx::NormalDistribution::param()'],
130 ········['../classgmx_1_1GammaDistribution.xhtml#a35f0e16a9da71056786953c5095ae334',·1,·'gmx::GammaDistribution::param()'],130 ········['../classgmx_1_1GammaDistribution.xhtml#a35f0e16a9da71056786953c5095ae334',·1,·'gmx::GammaDistribution::param()'],
131 ········['../classgmx_1_1SelectionTreeElement.xhtml#a0b4956164b6ed61094a550099fa90d3b',·1,·'gmx::SelectionTreeElement::param'],131 ········['../classgmx_1_1SelectionTreeElement.xhtml#a0b4956164b6ed61094a550099fa90d3b',·1,·'gmx::SelectionTreeElement::param'],
132 ········['../structgmx__ana__selmethod__t.xhtml#afd48ccc940b2c37d46c65bbeb5fb7ff3',·1,·'gmx_ana_selmethod_t::param'],132 ········['../structgmx__ana__selmethod__t.xhtml#afd48ccc940b2c37d46c65bbeb5fb7ff3',·1,·'gmx_ana_selmethod_t::param'],
133 ········['../classgmx_1_1ExponentialDistribution.xhtml#ac5071065401d78716721b2d8512b9f75',·1,·'gmx::ExponentialDistribution::param()·const']133 ········['../classgmx_1_1ExponentialDistribution.xhtml#ac5071065401d78716721b2d8512b9f75',·1,·'gmx::ExponentialDistribution::param()·const']
134 ····]],134 ····]],
135 ····['param_5ftype_78',·['param_type',·['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml',·1,·'gmx::ExponentialDistribution&lt;·RealType·&gt;::param_type'],135 ····['param_5ftype_78',·['param_type',·['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml',·1,·'gmx::ExponentialDistribution&lt;·RealType·&gt;::param_type'],
136 ········['../classgmx_1_1GammaDistribution_1_1param__type.xhtml',·1,·'gmx::GammaDistribution&lt;·RealType·&gt;::param_type'],136 ········['../classgmx_1_1GammaDistribution_1_1param__type.xhtml',·1,·'gmx::GammaDistribution&lt;·RealType·&gt;::param_type'],
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108 ····['read_5fwham_5fin_66',·['read_wham_in',·['../gmx__wham_8cpp.xhtml#a2b227e67bccc413b5352a9011f9dd2ce',·1,·'gmx_wham.cpp']]],108 ····['read_5fwham_5fin_66',·['read_wham_in',·['../gmx__wham_8cpp.xhtml#a2b227e67bccc413b5352a9011f9dd2ce',·1,·'gmx_wham.cpp']]],
109 ····['readall_67',·['readAll',·['../classgmx_1_1TextReader.xhtml#a0fe2f628d9f57041bd5c14a712e5c0b1',·1,·'gmx::TextReader']]],109 ····['readall_67',·['readAll',·['../classgmx_1_1TextReader.xhtml#a0fe2f628d9f57041bd5c14a712e5c0b1',·1,·'gmx::TextReader']]],
110 ····['readatomicstructurefactors_68',·['readAtomicStructureFactors',·['../namespacegmx.xhtml#a2a8d393afe70146222257f8bb955b627',·1,·'gmx']]],110 ····['readatomicstructurefactors_68',·['readAtomicStructureFactors',·['../namespacegmx.xhtml#a2a8d393afe70146222257f8bb955b627',·1,·'gmx']]],
111 ····['readcharbufferfromfile_69',·['readCharBufferFromFile',·['../namespacegmx_1_1anonymous__namespace_02mrcdensitymap_8cpp_03.xhtml#a251ae26a44272d5cd9fcf0f78898d0aa',·1,·'gmx::anonymous_namespace{mrcdensitymap.cpp}']]],111 ····['readcharbufferfromfile_69',·['readCharBufferFromFile',·['../namespacegmx_1_1anonymous__namespace_02mrcdensitymap_8cpp_03.xhtml#a251ae26a44272d5cd9fcf0f78898d0aa',·1,·'gmx::anonymous_namespace{mrcdensitymap.cpp}']]],
112 ····['readcheckpoint_70',·['readcheckpoint',·['../classgmx_1_1ITemperatureCouplingImpl.xhtml#a94f280e3751b37b4b109a5ff63054b74',·1,·'gmx::ITemperatureCouplingImpl::readCheckpoint()'],112 ····['readcheckpoint_70',·['readcheckpoint',·['../classgmx_1_1ITemperatureCouplingImpl.xhtml#a94f280e3751b37b4b109a5ff63054b74',·1,·'gmx::ITemperatureCouplingImpl::readCheckpoint()'],
113 ········['../classgmx_1_1VRescaleTemperatureCoupling.xhtml#a90f8b87a5b2b0416bab500aebe63a996',·1,·'gmx::VRescaleTemperatureCoupling::readCheckpoint()'],113 ········['../classgmx_1_1NoseHooverTemperatureCoupling.xhtml#ad15e911e803e015e6473f7c1eb7f281c',·1,·'gmx::NoseHooverTemperatureCoupling::readCheckpoint()'],
114 ········['../classgmx_1_1BerendsenTemperatureCoupling.xhtml#aa01f54a2056e9aa0a6fa87d52c4d027f',·1,·'gmx::BerendsenTemperatureCoupling::readCheckpoint()'],114 ········['../classgmx_1_1BerendsenTemperatureCoupling.xhtml#aa01f54a2056e9aa0a6fa87d52c4d027f',·1,·'gmx::BerendsenTemperatureCoupling::readCheckpoint()'],
115 ········['../classgmx_1_1NoseHooverTemperatureCoupling.xhtml#ad15e911e803e015e6473f7c1eb7f281c',·1,·'gmx::NoseHooverTemperatureCoupling::readCheckpoint()']115 ········['../classgmx_1_1VRescaleTemperatureCoupling.xhtml#a90f8b87a5b2b0416bab500aebe63a996',·1,·'gmx::VRescaleTemperatureCoupling::readCheckpoint()']
116 ····]],116 ····]],
117 ····['readcheckpointdata_71',·['ReadCheckpointData',·['../namespacegmx.xhtml#abd9cf155c3e31c8c699051ad1dea3d3b',·1,·'gmx']]],117 ····['readcheckpointdata_71',·['ReadCheckpointData',·['../namespacegmx.xhtml#abd9cf155c3e31c8c699051ad1dea3d3b',·1,·'gmx']]],
118 ····['readcheckpointdataholder_72',·['ReadCheckpointDataHolder',·['../classgmx_1_1ReadCheckpointDataHolder.xhtml',·1,·'gmx']]],118 ····['readcheckpointdataholder_72',·['ReadCheckpointDataHolder',·['../classgmx_1_1ReadCheckpointDataHolder.xhtml',·1,·'gmx']]],
119 ····['readcheckpointtotrxframe_73',·['readcheckpointtotrxframe',·['../classgmx_1_1StatePropagatorData.xhtml#a333328298283d95aa84be76408da4a7f',·1,·'gmx::StatePropagatorData::readCheckpointToTrxFrame()'],119 ····['readcheckpointtotrxframe_73',·['readcheckpointtotrxframe',·['../classgmx_1_1StatePropagatorData.xhtml#a333328298283d95aa84be76408da4a7f',·1,·'gmx::StatePropagatorData::readCheckpointToTrxFrame()'],
120 ········['../classgmx_1_1ModularSimulator.xhtml#a14f99d57fa6ff26d83990460b8e0e097',·1,·'gmx::ModularSimulator::readCheckpointToTrxFrame()'], 
121 ········['../classgmx_1_1FreeEnergyPerturbationData.xhtml#a7dd83b0ad9158a757e111837bc404731',·1,·'gmx::FreeEnergyPerturbationData::readCheckpointToTrxFrame()']120 ········['../classgmx_1_1FreeEnergyPerturbationData.xhtml#a7dd83b0ad9158a757e111837bc404731',·1,·'gmx::FreeEnergyPerturbationData::readCheckpointToTrxFrame()'],
 121 ········['../classgmx_1_1ModularSimulator.xhtml#a14f99d57fa6ff26d83990460b8e0e097',·1,·'gmx::ModularSimulator::readCheckpointToTrxFrame()']
122 ····]],122 ····]],
123 ····['readchildentries_74',·['readChildEntries',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#a69a563fe5bf6aca78b09435324e5fa06',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],123 ····['readchildentries_74',·['readChildEntries',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#a69a563fe5bf6aca78b09435324e5fa06',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],
124 ····['readcommand_75',·['readCommand',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a05320ddc33e42dbdd61c7b87eeca7f4b',·1,·'gmx::ImdSession::Impl']]],124 ····['readcommand_75',·['readCommand',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a05320ddc33e42dbdd61c7b87eeca7f4b',·1,·'gmx::ImdSession::Impl']]],
125 ····['readdouble_76',·['readDouble',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a18e0f91a26a44eba0461f0b29db52b3a',·1,·'gmx::test::TestReferenceChecker']]],125 ····['readdouble_76',·['readDouble',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a18e0f91a26a44eba0461f0b29db52b3a',·1,·'gmx::test::TestReferenceChecker']]],
126 ····['readedvecwithreferenceprojection_77',·['readEdVecWithReferenceProjection',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#ac6f9e82412778fba12ba7c87e6be5636',·1,·'anonymous_namespace{edsam.cpp}']]],126 ····['readedvecwithreferenceprojection_77',·['readEdVecWithReferenceProjection',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#ac6f9e82412778fba12ba7c87e6be5636',·1,·'anonymous_namespace{edsam.cpp}']]],
127 ····['readentry_78',·['readEntry',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#aff99e1e654b284a758c0a54737bb2171',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],127 ····['readentry_78',·['readEntry',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#aff99e1e654b284a758c0a54737bb2171',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],
128 ····['readfiletostring_79',·['readfiletostring',·['../classgmx_1_1TextReader.xhtml#a1b45b91d2bf6a6b0142a9a48d469ca25',·1,·'gmx::TextReader::readFileToString(const·char·*filename)'], 
129 ········['../classgmx_1_1TextReader.xhtml#a335a497245704967c1431f364ea0ca00',·1,·'gmx::TextReader::readFileToString(const·std::string·&amp;filename)']128 ····['readfiletostring_79',·['readfiletostring',·['../classgmx_1_1TextReader.xhtml#a335a497245704967c1431f364ea0ca00',·1,·'gmx::TextReader::readFileToString(const·std::string·&amp;filename)'],
 129 ········['../classgmx_1_1TextReader.xhtml#a1b45b91d2bf6a6b0142a9a48d469ca25',·1,·'gmx::TextReader::readFileToString(const·char·*filename)']
130 ····]],130 ····]],
131 ····['readfloat_80',·['readFloat',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a0d317c9ca0387d6e6a7bbab7eab5533f',·1,·'gmx::test::TestReferenceChecker']]],131 ····['readfloat_80',·['readFloat',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a0d317c9ca0387d6e6a7bbab7eab5533f',·1,·'gmx::test::TestReferenceChecker']]],
132 ····['readgridsize_81',·['readGridSize',·['../pme__gather__sycl_8cpp.xhtml#afe2d46ad54be09003ac706146d2c82c1',·1,·'pme_gather_sycl.cpp']]],132 ····['readgridsize_81',·['readGridSize',·['../pme__gather__sycl_8cpp.xhtml#afe2d46ad54be09003ac706146d2c82c1',·1,·'pme_gather_sycl.cpp']]],
133 ····['readindexfromserializer_82',·['readIndexFromSerializer',·['../namespacegmx_1_1test.xhtml#aea28757b483109810d993d9d1684ad10',·1,·'gmx::test']]],133 ····['readindexfromserializer_82',·['readIndexFromSerializer',·['../namespacegmx_1_1test.xhtml#aea28757b483109810d993d9d1684ad10',·1,·'gmx::test']]],
134 ····['reading_83',·['reading',·['../classgmx_1_1ISerializer.xhtml#aa5f04de61828ef7af2c1585e3e91a277',·1,·'gmx::ISerializer::reading()'],134 ····['reading_83',·['reading',·['../classgmx_1_1ISerializer.xhtml#aa5f04de61828ef7af2c1585e3e91a277',·1,·'gmx::ISerializer::reading()'],
135 ········['../classgmx_1_1FileIOXdrSerializer.xhtml#a7eca6d67ea8bea5006e111762492ca16',·1,·'gmx::FileIOXdrSerializer::reading()']135 ········['../classgmx_1_1FileIOXdrSerializer.xhtml#a7eca6d67ea8bea5006e111762492ca16',·1,·'gmx::FileIOXdrSerializer::reading()']
136 ····]],136 ····]],
Offset 140, 22 lines modifiedOffset 140, 22 lines modified
140 ····['readinteger_87',·['readInteger',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a0202a4ac0d2c52d64122f2f9165341fe',·1,·'gmx::test::TestReferenceChecker']]],140 ····['readinteger_87',·['readInteger',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a0202a4ac0d2c52d64122f2f9165341fe',·1,·'gmx::test::TestReferenceChecker']]],
141 ····['readintegratedautocorrelationtimes_88',·['readIntegratedAutocorrelationTimes',·['../gmx__wham_8cpp.xhtml#a8ddf5450efbad4686970059912aa32d7',·1,·'gmx_wham.cpp']]],141 ····['readintegratedautocorrelationtimes_88',·['readIntegratedAutocorrelationTimes',·['../gmx__wham_8cpp.xhtml#a8ddf5450efbad4686970059912aa32d7',·1,·'gmx_wham.cpp']]],
142 ····['readinternalparametersfromkvt_89',·['readinternalparametersfromkvt',·['../classgmx_1_1QMMMOptions.xhtml#a7001a33f3f283c4912a3ab3cfdd5b0f9',·1,·'gmx::QMMMOptions::readInternalParametersFromKvt()'],142 ····['readinternalparametersfromkvt_89',·['readinternalparametersfromkvt',·['../classgmx_1_1QMMMOptions.xhtml#a7001a33f3f283c4912a3ab3cfdd5b0f9',·1,·'gmx::QMMMOptions::readInternalParametersFromKvt()'],
143 ········['../classgmx_1_1DensityFittingOptions.xhtml#aa1077af7e6cbeba8e1c052f653c45bac',·1,·'gmx::DensityFittingOptions::readInternalParametersFromKvt()'],143 ········['../classgmx_1_1DensityFittingOptions.xhtml#aa1077af7e6cbeba8e1c052f653c45bac',·1,·'gmx::DensityFittingOptions::readInternalParametersFromKvt()'],
144 ········['../classgmx_1_1ColvarsOptions.xhtml#a70d2e05f69165b9126d74813f98f23fd',·1,·'gmx::ColvarsOptions::readInternalParametersFromKvt()']144 ········['../classgmx_1_1ColvarsOptions.xhtml#a70d2e05f69165b9126d74813f98f23fd',·1,·'gmx::ColvarsOptions::readInternalParametersFromKvt()']
145 ····]],145 ····]],
146 ····['readir_2ecpp_90',·['readir.cpp',·['../tests_2readir_8cpp.xhtml',·1,·'']]],146 ····['readir_2ecpp_90',·['readir.cpp',·['../tests_2readir_8cpp.xhtml',·1,·'']]],
147 ····['readkvtcheckpointvalue_91',·['readkvtcheckpointvalue',·['../namespacegmx.xhtml#a868475d2fdb19a816c1170bd8a7e923f',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·ValueType·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)'], 
148 ········['../namespacegmx.xhtml#acf49b322c7346edb9b5d2e5cbbff100c',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·std::int64_t·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)'],147 ····['readkvtcheckpointvalue_91',·['readkvtcheckpointvalue',·['../namespacegmx.xhtml#acf49b322c7346edb9b5d2e5cbbff100c',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·std::int64_t·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)'],
 148 ········['../namespacegmx.xhtml#a868475d2fdb19a816c1170bd8a7e923f',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·ValueType·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)'],
149 ········['../namespacegmx.xhtml#a05084482777d678a18da8a32b7410fba',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·real·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)']149 ········['../namespacegmx.xhtml#a05084482777d678a18da8a32b7410fba',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·real·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)']
150 ····]],150 ····]],
151 ····['readline_92',·['readline',·['../classgmx_1_1StandardInputStream.xhtml#a1c31a636987618552b18e9ec72c77400',·1,·'gmx::StandardInputStream::readLine()'],151 ····['readline_92',·['readline',·['../classgmx_1_1StandardInputStream.xhtml#a1c31a636987618552b18e9ec72c77400',·1,·'gmx::StandardInputStream::readLine()'],
152 ········['../classgmx_1_1TextInputFile.xhtml#a22384d24f47f270203e74d1b8f765234',·1,·'gmx::TextInputFile::readLine()'],152 ········['../classgmx_1_1TextInputFile.xhtml#a22384d24f47f270203e74d1b8f765234',·1,·'gmx::TextInputFile::readLine()'],
153 ········['../classgmx_1_1TextInputStream.xhtml#addd5947a5b6f6065db02467d8f3c5137',·1,·'gmx::TextInputStream::readLine()'], 
154 ········['../classgmx_1_1TextReader.xhtml#a8a4578260ea39592894870109d92e723',·1,·'gmx::TextReader::readLine()'],153 ········['../classgmx_1_1TextReader.xhtml#a8a4578260ea39592894870109d92e723',·1,·'gmx::TextReader::readLine()'],
 154 ········['../classgmx_1_1TextInputStream.xhtml#addd5947a5b6f6065db02467d8f3c5137',·1,·'gmx::TextInputStream::readLine()'],
155 ········['../classgmx_1_1StringInputStream.xhtml#a5312438a2d0d1ff527c027a4d7b5181d',·1,·'gmx::StringInputStream::readLine()']155 ········['../classgmx_1_1StringInputStream.xhtml#a5312438a2d0d1ff527c027a4d7b5181d',·1,·'gmx::StringInputStream::readLine()']
156 ····]],156 ····]],
157 ····['readlineimpl_93',·['readLineImpl',·['../namespacegmx_1_1anonymous__namespace_02filestream_8cpp_03.xhtml#a790ebb9ff1c047f07a40d8e253abc7e5',·1,·'gmx::anonymous_namespace{filestream.cpp}']]],157 ····['readlineimpl_93',·['readLineImpl',·['../namespacegmx_1_1anonymous__namespace_02filestream_8cpp_03.xhtml#a790ebb9ff1c047f07a40d8e253abc7e5',·1,·'gmx::anonymous_namespace{filestream.cpp}']]],
158 ····['readnextframe_94',·['readnextframe',·['../classgmx_1_1TrajectoryAnalysisRunnerCommon.xhtml#a42ea08dac69a6d50fa38b84ec3ce513e',·1,·'gmx::TrajectoryAnalysisRunnerCommon::readNextFrame()'],158 ····['readnextframe_94',·['readnextframe',·['../classgmx_1_1TrajectoryAnalysisRunnerCommon.xhtml#a42ea08dac69a6d50fa38b84ec3ce513e',·1,·'gmx::TrajectoryAnalysisRunnerCommon::readNextFrame()'],
159 ········['../classgmx_1_1test_1_1EnergyFrameReader.xhtml#a518629ed972ceaf34296efab0fa3876e',·1,·'gmx::test::EnergyFrameReader::readNextFrame()'],159 ········['../classgmx_1_1test_1_1EnergyFrameReader.xhtml#a518629ed972ceaf34296efab0fa3876e',·1,·'gmx::test::EnergyFrameReader::readNextFrame()'],
160 ········['../classgmx_1_1test_1_1TrajectoryFrameReader.xhtml#a63117177e0d578d9a15c12db7bb9f680',·1,·'gmx::test::TrajectoryFrameReader::readNextFrame()']160 ········['../classgmx_1_1test_1_1TrajectoryFrameReader.xhtml#a63117177e0d578d9a15c12db7bb9f680',·1,·'gmx::test::TrajectoryFrameReader::readNextFrame()']
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Offset 163, 16 lines modifiedOffset 163, 16 lines modified
163 ····['readreferencedatafile_96',·['readReferenceDataFile',·['../group__module__testutils.xhtml#gaca906b8c921bc54965ffa4750d6bfbc9',·1,·'gmx::test']]],163 ····['readreferencedatafile_96',·['readReferenceDataFile',·['../group__module__testutils.xhtml#gaca906b8c921bc54965ffa4750d6bfbc9',·1,·'gmx::test']]],
164 ····['readreferencedensityfromfile_97',·['readReferenceDensityFromFile',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#ad4e222142529fd47f5bef11ea129fc7f',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup']]],164 ····['readreferencedensityfromfile_97',·['readReferenceDensityFromFile',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#ad4e222142529fd47f5bef11ea129fc7f',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup']]],
165 ····['readresiduedatabase_98',·['readResidueDatabase',·['../resall_8h.xhtml#a50a12a882cf1a437fca36c47ce6d23d1',·1,·'resall.cpp']]],165 ····['readresiduedatabase_98',·['readResidueDatabase',·['../resall_8h.xhtml#a50a12a882cf1a437fca36c47ce6d23d1',·1,·'resall.cpp']]],
166 ····['readstate_99',·['readstate',·['../structgmx_1_1ColvarsForceProviderState.xhtml#a14e15e0a9533b3a6d71508a927f0e5bd',·1,·'gmx::ColvarsForceProviderState::readState()'],166 ····['readstate_99',·['readstate',·['../structgmx_1_1ColvarsForceProviderState.xhtml#a14e15e0a9533b3a6d71508a927f0e5bd',·1,·'gmx::ColvarsForceProviderState::readState()'],
167 ········['../structgmx_1_1DensityFittingForceProviderState.xhtml#a2911de3619c7d463438ddd52813ffde5',·1,·'gmx::DensityFittingForceProviderState::readState()']167 ········['../structgmx_1_1DensityFittingForceProviderState.xhtml#a2911de3619c7d463438ddd52813ffde5',·1,·'gmx::DensityFittingForceProviderState::readState()']
168 ····]],168 ····]],
169 ····['readstring_100',·['readString',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a38fcda0cfed63c609eeffe629101ce42',·1,·'gmx::test::TestReferenceChecker']]],169 ····['readstring_100',·['readString',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a38fcda0cfed63c609eeffe629101ce42',·1,·'gmx::test::TestReferenceChecker']]],
170 ····['readstringtableentry_101',·['readstringtableentry',·['../symtab_8cpp.xhtml#a14c793043038dfc8081c875bcce99bb4',·1,·'readStringTableEntry(gmx::ISerializer·*serializer,·const·StringTable·&amp;table):&#160;symtab.cpp'],170 ····['readstringtableentry_101',·['readstringtableentry',·['../symtab_8h.xhtml#a14c793043038dfc8081c875bcce99bb4',·1,·'readStringTableEntry(gmx::ISerializer·*serializer,·const·StringTable·&amp;table):&#160;symtab.cpp'],
171 ········['../symtab_8h.xhtml#a14c793043038dfc8081c875bcce99bb4',·1,·'readStringTableEntry(gmx::ISerializer·*serializer,·const·StringTable·&amp;table):&#160;symtab.cpp'],171 ········['../symtab_8cpp.xhtml#a14c793043038dfc8081c875bcce99bb4',·1,·'readStringTableEntry(gmx::ISerializer·*serializer,·const·StringTable·&amp;table):&#160;symtab.cpp'],
172 ········['../classStringTableEntry.xhtml#a14c793043038dfc8081c875bcce99bb4',·1,·'StringTableEntry::readStringTableEntry']172 ········['../classStringTableEntry.xhtml#a14c793043038dfc8081c875bcce99bb4',·1,·'StringTableEntry::readStringTableEntry']
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175 ····['readuchar_103',·['readUChar',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a74807c9db3ebc891f38a20494d2223eb',·1,·'gmx::test::TestReferenceChecker']]],175 ····['readuchar_103',·['readUChar',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a74807c9db3ebc891f38a20494d2223eb',·1,·'gmx::test::TestReferenceChecker']]],
176 ····['readuserpmfandtargetdistribution_104',·['readUserPmfAndTargetDistribution',·['../namespacegmx.xhtml#a4cf14b3e4d45a42254ed8d42c1d7685c',·1,·'gmx']]],176 ····['readuserpmfandtargetdistribution_104',·['readUserPmfAndTargetDistribution',·['../namespacegmx.xhtml#a4cf14b3e4d45a42254ed8d42c1d7685c',·1,·'gmx']]],
177 ····['readvmdforces_105',·['readVmdForces',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a8727e2dcdf140c43313d7bc1d35a24df',·1,·'gmx::ImdSession::Impl']]],177 ····['readvmdforces_105',·['readVmdForces',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a8727e2dcdf140c43313d7bc1d35a24df',·1,·'gmx::ImdSession::Impl']]],
178 ····['readwriteflags_106',·['readWriteFlags',·['../classgmx_1_1FileNameOption.xhtml#ae5dac2a5fb815fb82f3671a4276ff127',·1,·'gmx::FileNameOption']]],178 ····['readwriteflags_106',·['readWriteFlags',·['../classgmx_1_1FileNameOption.xhtml#ae5dac2a5fb815fb82f3671a4276ff127',·1,·'gmx::FileNameOption']]],
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Offset 326, 16 lines modifiedOffset 326, 16 lines modified
326 ····['selection_20parsing_216',·['Selection·parsing',·['../page_module_selection_parser.xhtml',·1,·'page_selections']]],326 ····['selection_20parsing_216',·['Selection·parsing',·['../page_module_selection_parser.xhtml',·1,·'page_selections']]],
327 ····['selection_2ecpp_217',·['selection.cpp',·['../selection_8cpp.xhtml',·1,·'']]],327 ····['selection_2ecpp_217',·['selection.cpp',·['../selection_8cpp.xhtml',·1,·'']]],
328 ····['selection_2eh_218',·['selection.h',·['../selection_8h.xhtml',·1,·'']]],328 ····['selection_2eh_218',·['selection.h',·['../selection_8h.xhtml',·1,·'']]],
329 ····['selectioncollection_219',·['selectioncollection',·['../classgmx_1_1SelectionCollection.xhtml',·1,·'gmx::SelectionCollection'],329 ····['selectioncollection_219',·['selectioncollection',·['../classgmx_1_1SelectionCollection.xhtml',·1,·'gmx::SelectionCollection'],
330 ········['../classgmx_1_1SelectionCollection.xhtml#af4c4da031a86714c51d96f203ecc80b8',·1,·'gmx::SelectionCollection::SelectionCollection()'],330 ········['../classgmx_1_1SelectionCollection.xhtml#af4c4da031a86714c51d96f203ecc80b8',·1,·'gmx::SelectionCollection::SelectionCollection()'],
331 ········['../classgmx_1_1AnalysisDataPlotSettings.xhtml#aee72b1af0481b99ca67e0ca0beefaa28',·1,·'gmx::AnalysisDataPlotSettings::selectionCollection()']331 ········['../classgmx_1_1AnalysisDataPlotSettings.xhtml#aee72b1af0481b99ca67e0ca0beefaa28',·1,·'gmx::AnalysisDataPlotSettings::selectionCollection()']
332 ····]],332 ····]],
333 ····['selectioncollection_2ecpp_220',·['selectioncollection.cpp',·['../selectioncollection_8cpp.xhtml',·1,·'(Global·Namespace)'],333 ····['selectioncollection_2ecpp_220',·['selectioncollection.cpp',·['../tests_2selectioncollection_8cpp.xhtml',·1,·'(Global·Namespace)'],
334 ········['../tests_2selectioncollection_8cpp.xhtml',·1,·'(Global·Namespace)']334 ········['../selectioncollection_8cpp.xhtml',·1,·'(Global·Namespace)']
335 ····]],335 ····]],
336 ····['selectioncollection_2eh_221',·['selectioncollection.h',·['../selectioncollection_8h.xhtml',·1,·'']]],336 ····['selectioncollection_2eh_221',·['selectioncollection.h',·['../selectioncollection_8h.xhtml',·1,·'']]],
337 ····['selectioncollection_5fimpl_2eh_222',·['selectioncollection_impl.h',·['../selectioncollection__impl_8h.xhtml',·1,·'']]],337 ····['selectioncollection_5fimpl_2eh_222',·['selectioncollection_impl.h',·['../selectioncollection__impl_8h.xhtml',·1,·'']]],
338 ····['selectiondata_223',·['selectiondata',·['../classgmx_1_1internal_1_1SelectionData.xhtml#a1424b17d6e37e120fe5f8f0eb74a99e7',·1,·'gmx::internal::SelectionData::SelectionData()'],338 ····['selectiondata_223',·['selectiondata',·['../classgmx_1_1internal_1_1SelectionData.xhtml#a1424b17d6e37e120fe5f8f0eb74a99e7',·1,·'gmx::internal::SelectionData::SelectionData()'],
339 ········['../classgmx_1_1internal_1_1SelectionData.xhtml',·1,·'gmx::internal::SelectionData']339 ········['../classgmx_1_1internal_1_1SelectionData.xhtml',·1,·'gmx::internal::SelectionData']
340 ····]],340 ····]],
341 ····['selectiondatalist_224',·['SelectionDataList',·['../namespacegmx.xhtml#ab5559201ddf8596d12d99a3c3e45e989',·1,·'gmx']]],341 ····['selectiondatalist_224',·['SelectionDataList',·['../namespacegmx.xhtml#ab5559201ddf8596d12d99a3c3e45e989',·1,·'gmx']]],
Offset 360, 47 lines modifiedOffset 360, 47 lines modified
360 ····['selectionoption_237',·['selectionoption',·['../classgmx_1_1SelectionOption.xhtml',·1,·'gmx::SelectionOption'],360 ····['selectionoption_237',·['selectionoption',·['../classgmx_1_1SelectionOption.xhtml',·1,·'gmx::SelectionOption'],
361 ········['../classgmx_1_1SelectionOption.xhtml#a3b7fd0aeff67eb82d3e42adfe912ee4d',·1,·'gmx::SelectionOption::SelectionOption()']361 ········['../classgmx_1_1SelectionOption.xhtml#a3b7fd0aeff67eb82d3e42adfe912ee4d',·1,·'gmx::SelectionOption::SelectionOption()']
362 ····]],362 ····]],
363 ····['selectionoption_2ecpp_238',·['selectionoption.cpp',·['../selectionoption_8cpp.xhtml',·1,·'(Global·Namespace)'],363 ····['selectionoption_2ecpp_238',·['selectionoption.cpp',·['../selectionoption_8cpp.xhtml',·1,·'(Global·Namespace)'],
364 ········['../tests_2selectionoption_8cpp.xhtml',·1,·'(Global·Namespace)']364 ········['../tests_2selectionoption_8cpp.xhtml',·1,·'(Global·Namespace)']
365 ····]],365 ····]],
366 ····['selectionoption_2eh_239',·['selectionoption.h',·['../selectionoption_8h.xhtml',·1,·'']]],366 ····['selectionoption_2eh_239',·['selectionoption.h',·['../selectionoption_8h.xhtml',·1,·'']]],
367 ····['selectionoptionbehavior_240',·['selectionoptionbehavior',·['../classgmx_1_1SelectionOptionBehavior.xhtml',·1,·'gmx::SelectionOptionBehavior'],367 ····['selectionoptionbehavior_240',·['selectionoptionbehavior',·['../classgmx_1_1SelectionOptionBehavior.xhtml#a21603fb725d94a93250b0be84d3d7a6c',·1,·'gmx::SelectionOptionBehavior::SelectionOptionBehavior()'],
368 ········['../classgmx_1_1SelectionOptionBehavior.xhtml#a21603fb725d94a93250b0be84d3d7a6c',·1,·'gmx::SelectionOptionBehavior::SelectionOptionBehavior()']368 ········['../classgmx_1_1SelectionOptionBehavior.xhtml',·1,·'gmx::SelectionOptionBehavior']
369 ····]],369 ····]],
370 ····['selectionoptionbehavior_2ecpp_241',·['selectionoptionbehavior.cpp',·['../selectionoptionbehavior_8cpp.xhtml',·1,·'']]],370 ····['selectionoptionbehavior_2ecpp_241',·['selectionoptionbehavior.cpp',·['../selectionoptionbehavior_8cpp.xhtml',·1,·'']]],
371 ····['selectionoptionbehavior_2eh_242',·['selectionoptionbehavior.h',·['../selectionoptionbehavior_8h.xhtml',·1,·'']]],371 ····['selectionoptionbehavior_2eh_242',·['selectionoptionbehavior.h',·['../selectionoptionbehavior_8h.xhtml',·1,·'']]],
372 ····['selectionoptioninfo_243',·['selectionoptioninfo',·['../classgmx_1_1SelectionOptionInfo.xhtml#a86d460125f437e3a579f100685a5d46f',·1,·'gmx::SelectionOptionInfo::SelectionOptionInfo()'],372 ····['selectionoptioninfo_243',·['selectionoptioninfo',·['../classgmx_1_1SelectionOptionInfo.xhtml#a86d460125f437e3a579f100685a5d46f',·1,·'gmx::SelectionOptionInfo::SelectionOptionInfo()'],
373 ········['../classgmx_1_1SelectionOptionInfo.xhtml',·1,·'gmx::SelectionOptionInfo']373 ········['../classgmx_1_1SelectionOptionInfo.xhtml',·1,·'gmx::SelectionOptionInfo']
374 ····]],374 ····]],
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375 ····['selectionoptionmanager_244',·['selectionoptionmanager',·['../classgmx_1_1SelectionOptionManager.xhtml#abfcd429376957cf60d31daed35726a85',·1,·'gmx::SelectionOptionManager::SelectionOptionManager()'],376 ········['../classgmx_1_1SelectionOptionManager.xhtml#abfcd429376957cf60d31daed35726a85',·1,·'gmx::SelectionOptionManager::SelectionOptionManager()']
376 ········['../classgmx_1_1SelectionOptionManager.xhtml',·1,·'gmx::SelectionOptionManager'] 
377 ····]],377 ····]],
378 ····['selectionoptionmanager_2ecpp_245',·['selectionoptionmanager.cpp',·['../selectionoptionmanager_8cpp.xhtml',·1,·'']]],378 ····['selectionoptionmanager_2ecpp_245',·['selectionoptionmanager.cpp',·['../selectionoptionmanager_8cpp.xhtml',·1,·'']]],
379 ····['selectionoptionmanager_2eh_246',·['selectionoptionmanager.h',·['../selectionoptionmanager_8h.xhtml',·1,·'']]],379 ····['selectionoptionmanager_2eh_246',·['selectionoptionmanager.h',·['../selectionoptionmanager_8h.xhtml',·1,·'']]],
380 ····['selectionoptionstorage_247',·['selectionoptionstorage',·['../classgmx_1_1SelectionOptionStorage.xhtml',·1,·'gmx::SelectionOptionStorage'],380 ····['selectionoptionstorage_247',·['selectionoptionstorage',·['../classgmx_1_1Selection.xhtml#a3dd781afa3dc217f65462ce050a61552',·1,·'gmx::Selection::SelectionOptionStorage'],
 381 ········['../classgmx_1_1SelectionOptionStorage.xhtml',·1,·'gmx::SelectionOptionStorage'],
381 ········['../classgmx_1_1SelectionOptionStorage.xhtml#aecf586e2202f78eaf691bfda3ce76ce3',·1,·'gmx::SelectionOptionStorage::SelectionOptionStorage()'],382 ········['../classgmx_1_1SelectionOptionStorage.xhtml#aecf586e2202f78eaf691bfda3ce76ce3',·1,·'gmx::SelectionOptionStorage::SelectionOptionStorage()'],
382 ········['../classgmx_1_1SelectionOptionManager.xhtml#a3dd781afa3dc217f65462ce050a61552',·1,·'gmx::SelectionOptionManager::SelectionOptionStorage'],383 ········['../classgmx_1_1SelectionOptionManager.xhtml#a3dd781afa3dc217f65462ce050a61552',·1,·'gmx::SelectionOptionManager::SelectionOptionStorage'],
383 ········['../classgmx_1_1Selection.xhtml#a3dd781afa3dc217f65462ce050a61552',·1,·'gmx::Selection::SelectionOptionStorage'], 
384 ········['../classgmx_1_1SelectionOption.xhtml#a3dd781afa3dc217f65462ce050a61552',·1,·'gmx::SelectionOption::SelectionOptionStorage']384 ········['../classgmx_1_1SelectionOption.xhtml#a3dd781afa3dc217f65462ce050a61552',·1,·'gmx::SelectionOption::SelectionOptionStorage']
385 ····]],385 ····]],
386 ····['selectionoptionstorage_2eh_248',·['selectionoptionstorage.h',·['../selectionoptionstorage_8h.xhtml',·1,·'']]],386 ····['selectionoptionstorage_2eh_248',·['selectionoptionstorage.h',·['../selectionoptionstorage_8h.xhtml',·1,·'']]],
387 ····['selectionoptiontest_249',·['SelectionOptionTest',·['../namespaceanonymous__namespace_02selectionoption_8cpp_03.xhtml#ad99a9b270cf6de85ac410309df322590',·1,·'anonymous_namespace{selectionoption.cpp}']]],387 ····['selectionoptiontest_249',·['SelectionOptionTest',·['../namespaceanonymous__namespace_02selectionoption_8cpp_03.xhtml#ad99a9b270cf6de85ac410309df322590',·1,·'anonymous_namespace{selectionoption.cpp}']]],
388 ····['selectionparserparameter_250',·['SelectionParserParameter',·['../classgmx_1_1SelectionParserParameter.xhtml',·1,·'gmx']]],388 ····['selectionparserparameter_250',·['SelectionParserParameter',·['../classgmx_1_1SelectionParserParameter.xhtml',·1,·'gmx']]],
389 ····['selectionparserparameterlist_251',·['SelectionParserParameterList',·['../namespacegmx.xhtml#a2000e8454576fcfcd5a8fdc5d060da4e',·1,·'gmx']]],389 ····['selectionparserparameterlist_251',·['SelectionParserParameterList',·['../namespacegmx.xhtml#a2000e8454576fcfcd5a8fdc5d060da4e',·1,·'gmx']]],
390 ····['selectionparserparameterlistpointer_252',·['SelectionParserParameterListPointer',·['../namespacegmx.xhtml#af69a9fb56d051d95e77a90d57a9fa42e',·1,·'gmx']]],390 ····['selectionparserparameterlistpointer_252',·['SelectionParserParameterListPointer',·['../namespacegmx.xhtml#af69a9fb56d051d95e77a90d57a9fa42e',·1,·'gmx']]],
391 ····['selectionparsersymbol_253',·['SelectionParserSymbol',·['../classgmx_1_1SelectionParserSymbol.xhtml',·1,·'gmx']]],391 ····['selectionparsersymbol_253',·['SelectionParserSymbol',·['../classgmx_1_1SelectionParserSymbol.xhtml',·1,·'gmx']]],
392 ····['selectionparsersymboliterator_254',·['selectionparsersymboliterator',·['../classgmx_1_1SelectionParserSymbolIterator.xhtml',·1,·'gmx::SelectionParserSymbolIterator'],392 ····['selectionparsersymboliterator_254',·['selectionparsersymboliterator',·['../classgmx_1_1SelectionParserSymbolIterator.xhtml',·1,·'gmx::SelectionParserSymbolIterator'],
393 ········['../classgmx_1_1SelectionParserSymbolTable.xhtml#a52ff44641590304f3b65ae1e3ecf1ebf',·1,·'gmx::SelectionParserSymbolTable::SelectionParserSymbolIterator'],393 ········['../classgmx_1_1SelectionParserSymbolTable.xhtml#a52ff44641590304f3b65ae1e3ecf1ebf',·1,·'gmx::SelectionParserSymbolTable::SelectionParserSymbolIterator'],
394 ········['../classgmx_1_1SelectionParserSymbolIterator.xhtml#af149c9045ffc0192c59dd228aba393f4',·1,·'gmx::SelectionParserSymbolIterator::SelectionParserSymbolIterator(const·SelectionParserSymbolIterator·&amp;other)']394 ········['../classgmx_1_1SelectionParserSymbolIterator.xhtml#af149c9045ffc0192c59dd228aba393f4',·1,·'gmx::SelectionParserSymbolIterator::SelectionParserSymbolIterator()']
395 ····]],395 ····]],
396 ····['selectionparsersymboltable_255',·['selectionparsersymboltable',·['../classgmx_1_1SelectionParserSymbolIterator.xhtml#a6f47492a3d07b5596df7c88528a15e1c',·1,·'gmx::SelectionParserSymbolIterator::SelectionParserSymbolTable'],396 ····['selectionparsersymboltable_255',·['selectionparsersymboltable',·['../classgmx_1_1SelectionParserSymbolTable.xhtml',·1,·'gmx::SelectionParserSymbolTable'],
397 ········['../classgmx_1_1SelectionParserSymbolTable.xhtml#a0e527683bcbb13c1ccf66187e380c3a6',·1,·'gmx::SelectionParserSymbolTable::SelectionParserSymbolTable()'], 
398 ········['../classgmx_1_1SelectionParserSymbol.xhtml#a6f47492a3d07b5596df7c88528a15e1c',·1,·'gmx::SelectionParserSymbol::SelectionParserSymbolTable'],397 ········['../classgmx_1_1SelectionParserSymbol.xhtml#a6f47492a3d07b5596df7c88528a15e1c',·1,·'gmx::SelectionParserSymbol::SelectionParserSymbolTable'],
 398 ········['../classgmx_1_1SelectionParserSymbolIterator.xhtml#a6f47492a3d07b5596df7c88528a15e1c',·1,·'gmx::SelectionParserSymbolIterator::SelectionParserSymbolTable'],
399 ········['../classgmx_1_1SelectionParserSymbolTable.xhtml',·1,·'gmx::SelectionParserSymbolTable']399 ········['../classgmx_1_1SelectionParserSymbolTable.xhtml#a0e527683bcbb13c1ccf66187e380c3a6',·1,·'gmx::SelectionParserSymbolTable::SelectionParserSymbolTable()']
400 ····]],400 ····]],
401 ····['selectionparservalue_256',·['SelectionParserValue',·['../classgmx_1_1SelectionParserValue.xhtml',·1,·'gmx']]],401 ····['selectionparservalue_256',·['SelectionParserValue',·['../classgmx_1_1SelectionParserValue.xhtml',·1,·'gmx']]],
402 ····['selectionparservaluelist_257',·['SelectionParserValueList',·['../namespacegmx.xhtml#aec46c9561c55f7595677160ee727395d',·1,·'gmx']]],402 ····['selectionparservaluelist_257',·['SelectionParserValueList',·['../namespacegmx.xhtml#aec46c9561c55f7595677160ee727395d',·1,·'gmx']]],
403 ····['selectionparservaluelistpointer_258',·['SelectionParserValueListPointer',·['../namespacegmx.xhtml#a043953ace26fa6e1f17f90245e3a29bd',·1,·'gmx']]],403 ····['selectionparservaluelistpointer_258',·['SelectionParserValueListPointer',·['../namespacegmx.xhtml#a043953ace26fa6e1f17f90245e3a29bd',·1,·'gmx']]],
404 ····['selectionposition_259',·['selectionposition',·['../classgmx_1_1SelectionPosition.xhtml',·1,·'gmx::SelectionPosition'],404 ····['selectionposition_259',·['selectionposition',·['../classgmx_1_1SelectionPosition.xhtml',·1,·'gmx::SelectionPosition'],
405 ········['../classgmx_1_1SelectionPosition.xhtml#a367587f7e23b341a85ae5d308b8a0ef8',·1,·'gmx::SelectionPosition::SelectionPosition()']405 ········['../classgmx_1_1SelectionPosition.xhtml#a367587f7e23b341a85ae5d308b8a0ef8',·1,·'gmx::SelectionPosition::SelectionPosition()']
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413 ····['selections_20selection_262',·['Parsing·and·Evaluation·of·Analysis·Selections·(selection)',·['../group__module__selection.xhtml',·1,·'']]],413 ····['selections_20selection_262',·['Parsing·and·Evaluation·of·Analysis·Selections·(selection)',·['../group__module__selection.xhtml',·1,·'']]],
414 ····['selections_5f_263',·['selections_',·['../classgmx_1_1TrajectoryAnalysisModuleData_1_1Impl.xhtml#af3968be6c04b57f731909d51b2244441',·1,·'gmx::TrajectoryAnalysisModuleData::Impl']]],414 ····['selections_5f_263',·['selections_',·['../classgmx_1_1TrajectoryAnalysisModuleData_1_1Impl.xhtml#af3968be6c04b57f731909d51b2244441',·1,·'gmx::TrajectoryAnalysisModuleData::Impl']]],
415 ····['selectionstringmatchtype_264',·['SelectionStringMatchType',·['../group__module__selection.xhtml#ga2ab58eea84794341a35ac67e9b2dd229',·1,·'gmx']]],415 ····['selectionstringmatchtype_264',·['SelectionStringMatchType',·['../group__module__selection.xhtml#ga2ab58eea84794341a35ac67e9b2dd229',·1,·'gmx']]],
416 ····['selectiontext_265',·['selectiontext',·['../classgmx_1_1Selection.xhtml#a710edcc0520d725ae7e90a5030427698',·1,·'gmx::Selection::selectionText()'],416 ····['selectiontext_265',·['selectiontext',·['../classgmx_1_1Selection.xhtml#a710edcc0520d725ae7e90a5030427698',·1,·'gmx::Selection::selectionText()'],
417 ········['../classgmx_1_1internal_1_1SelectionData.xhtml#a4f2c61f76602dd1dcfb45e9258191279',·1,·'gmx::internal::SelectionData::selectionText()']417 ········['../classgmx_1_1internal_1_1SelectionData.xhtml#a4f2c61f76602dd1dcfb45e9258191279',·1,·'gmx::internal::SelectionData::selectionText()']
418 ····]],418 ····]],
419 ····['selectiontopologyproperties_266',·['selectiontopologyproperties',·['../structgmx_1_1SelectionTopologyProperties.xhtml',·1,·'gmx::SelectionTopologyProperties'], 
420 ········['../structgmx_1_1SelectionTopologyProperties.xhtml#a14d9462c691bb3660355f479b50c6498',·1,·'gmx::SelectionTopologyProperties::SelectionTopologyProperties(bool·needsTopology,·bool·needsMasses)'],419 ····['selectiontopologyproperties_266',·['selectiontopologyproperties',·['../structgmx_1_1SelectionTopologyProperties.xhtml#a14d9462c691bb3660355f479b50c6498',·1,·'gmx::SelectionTopologyProperties::SelectionTopologyProperties(bool·needsTopology,·bool·needsMasses)'],
421 ········['../structgmx_1_1SelectionTopologyProperties.xhtml#af834c076cd9cbc2c57b89250727bfbe3',·1,·'gmx::SelectionTopologyProperties::SelectionTopologyProperties()']420 ········['../structgmx_1_1SelectionTopologyProperties.xhtml#af834c076cd9cbc2c57b89250727bfbe3',·1,·'gmx::SelectionTopologyProperties::SelectionTopologyProperties()'],
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423 ····['selectiontreeelement_267',·['selectiontreeelement',·['../classgmx_1_1SelectionTreeElement.xhtml#a23c50625ee174eb9b7cd96cf292c0a97',·1,·'gmx::SelectionTreeElement::SelectionTreeElement()'],423 ····['selectiontreeelement_267',·['selectiontreeelement',·['../classgmx_1_1SelectionTreeElement.xhtml#a23c50625ee174eb9b7cd96cf292c0a97',·1,·'gmx::SelectionTreeElement::SelectionTreeElement()'],
424 ········['../classgmx_1_1SelectionTreeElement.xhtml',·1,·'gmx::SelectionTreeElement']424 ········['../classgmx_1_1SelectionTreeElement.xhtml',·1,·'gmx::SelectionTreeElement']
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427 ····['selectiontypeoption_269',·['SelectionTypeOption',·['../classgmx_1_1SelectionCollection.xhtml#af294f433688c52289ed05459d453dc34',·1,·'gmx::SelectionCollection']]],427 ····['selectiontypeoption_269',·['SelectionTypeOption',·['../classgmx_1_1SelectionCollection.xhtml#af294f433688c52289ed05459d453dc34',·1,·'gmx::SelectionCollection']]],
428 ····['selectmoduletest_270',·['SelectModuleTest',·['../namespaceanonymous__namespace_02select_8cpp_03.xhtml#a09ac3d90cb8f628ef8bcfb584a8ab2d6',·1,·'anonymous_namespace{select.cpp}']]],428 ····['selectmoduletest_270',·['SelectModuleTest',·['../namespaceanonymous__namespace_02select_8cpp_03.xhtml#a09ac3d90cb8f628ef8bcfb584a8ab2d6',·1,·'anonymous_namespace{select.cpp}']]],
429 ····['selectprunekernel_271',·['selectPruneKernel',·['../namespaceNbnxm.xhtml#a13759301368d62d361ad2e543cb68fff',·1,·'Nbnxm']]],429 ····['selectprunekernel_271',·['selectPruneKernel',·['../namespaceNbnxm.xhtml#a13759301368d62d361ad2e543cb68fff',·1,·'Nbnxm']]],
430 ····['selectsinglefromarray_272',·['selectSingleFromArray',·['../classgmx_1_1AnalysisNeighborhoodPositions.xhtml#ab7bfbb8eba303c38bff880fc78688e93',·1,·'gmx::AnalysisNeighborhoodPositions']]],430 ····['selectsinglefromarray_272',·['selectSingleFromArray',·['../classgmx_1_1AnalysisNeighborhoodPositions.xhtml#ab7bfbb8eba303c38bff880fc78688e93',·1,·'gmx::AnalysisNeighborhoodPositions']]],
431 ····['selectsplineandspreadkernelptr_273',·['selectSplineAndSpreadKernelPtr',·['../pme__gpu__internal_8cpp.xhtml#aecfebe55042dd51c6c0a96a2c89b0f57',·1,·'pme_gpu_internal.cpp']]],431 ····['selectsplineandspreadkernelptr_273',·['selectSplineAndSpreadKernelPtr',·['../pme__gpu__internal_8cpp.xhtml#aecfebe55042dd51c6c0a96a2c89b0f57',·1,·'pme_gpu_internal.cpp']]],
432 ····['selectsplinekernelptr_274',·['selectSplineKernelPtr',·['../pme__gpu__internal_8cpp.xhtml#abf494874acbbf5b70e1e33e008698fc1',·1,·'pme_gpu_internal.cpp']]],432 ····['selectsplinekernelptr_274',·['selectSplineKernelPtr',·['../pme__gpu__internal_8cpp.xhtml#abf494874acbbf5b70e1e33e008698fc1',·1,·'pme_gpu_internal.cpp']]],
433 ····['selectspreadkernelptr_275',·['selectSpreadKernelPtr',·['../pme__gpu__internal_8cpp.xhtml#a8eeee450b2b1ed42c53912d7975eee9b',·1,·'pme_gpu_internal.cpp']]],433 ····['selectspreadkernelptr_275',·['selectSpreadKernelPtr',·['../pme__gpu__internal_8cpp.xhtml#a8eeee450b2b1ed42c53912d7975eee9b',·1,·'pme_gpu_internal.cpp']]],
434 ····['selelem_2ecpp_276',·['selelem.cpp',·['../selelem_8cpp.xhtml',·1,·'']]],434 ····['selelem_2ecpp_276',·['selelem.cpp',·['../selelem_8cpp.xhtml',·1,·'']]],
435 ····['selelem_2eh_277',·['selelem.h',·['../selelem_8h.xhtml',·1,·'']]],435 ····['selelem_2eh_277',·['selelem.h',·['../selelem_8h.xhtml',·1,·'']]],
436 ····['selelemtemporaryvalueassigner_278',·['selelemtemporaryvalueassigner',·['../classanonymous__namespace_02evaluate_8cpp_03_1_1SelelemTemporaryValueAssigner.xhtml',·1,·'anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner'],436 ····['selelemtemporaryvalueassigner_278',·['selelemtemporaryvalueassigner',·['../classanonymous__namespace_02evaluate_8cpp_03_1_1SelelemTemporaryValueAssigner.xhtml#af0c114152bd2b93303b710e4f8d07cf3',·1,·'anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner::SelelemTemporaryValueAssigner()'],
437 ········['../classanonymous__namespace_02evaluate_8cpp_03_1_1SelelemTemporaryValueAssigner.xhtml#a154fddb09ea04bbdd3e59f4823bfd920',·1,·'anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner::SelelemTemporaryValueAssigner(const·SelectionTreeElementPointer·&amp;sel,·const·SelectionTreeElement·&amp;vsource)'],437 ········['../classanonymous__namespace_02evaluate_8cpp_03_1_1SelelemTemporaryValueAssigner.xhtml',·1,·'anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner'],
438 ········['../classanonymous__namespace_02evaluate_8cpp_03_1_1SelelemTemporaryValueAssigner.xhtml#af0c114152bd2b93303b710e4f8d07cf3',·1,·'anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner::SelelemTemporaryValueAssigner()']438 ········['../classanonymous__namespace_02evaluate_8cpp_03_1_1SelelemTemporaryValueAssigner.xhtml#a154fddb09ea04bbdd3e59f4823bfd920',·1,·'anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner::SelelemTemporaryValueAssigner()']
439 ····]],439 ····]],
440 ····['selfenergy_279',·['selfenergy',·['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1EwaldTabulated_01_4.xhtml#aad40b56c23fdb67151a395bf70a58b78',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::EwaldTabulated·&gt;::selfEnergy()'],440 ····['selfenergy_279',·['selfenergy',·['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1EwaldTabulated_01_4.xhtml#aad40b56c23fdb67151a395bf70a58b78',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::EwaldTabulated·&gt;::selfEnergy()'],
 441 ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1RF_01_4.xhtml#a83bb16148e1beec93fb1f70e4cfa7485',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::RF·&gt;::selfEnergy()'],
441 ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1EwaldAnalytical_01_4.xhtml#adaa753e42803ea6c0c25f9927fe291d8',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::EwaldAnalytical·&gt;::selfEnergy()'],442 ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1EwaldAnalytical_01_4.xhtml#adaa753e42803ea6c0c25f9927fe291d8',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::EwaldAnalytical·&gt;::selfEnergy()']
442 ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1RF_01_4.xhtml#a83bb16148e1beec93fb1f70e4cfa7485',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::RF·&gt;::selfEnergy()'] 
443 ····]],443 ····]],
444 ····['selhelp_2ecpp_280',·['selhelp.cpp',·['../selhelp_8cpp.xhtml',·1,·'']]],444 ····['selhelp_2ecpp_280',·['selhelp.cpp',·['../selhelp_8cpp.xhtml',·1,·'']]],
445 ····['selhelp_2eh_281',·['selhelp.h',·['../selhelp_8h.xhtml',·1,·'']]],445 ····['selhelp_2eh_281',·['selhelp.h',·['../selhelp_8h.xhtml',·1,·'']]],
446 ····['selmethod_2ecpp_282',·['selmethod.cpp',·['../selmethod_8cpp.xhtml',·1,·'']]],446 ····['selmethod_2ecpp_282',·['selmethod.cpp',·['../selmethod_8cpp.xhtml',·1,·'']]],
447 ····['selmethod_2eh_283',·['selmethod.h',·['../selmethod_8h.xhtml',·1,·'']]],447 ····['selmethod_2eh_283',·['selmethod.h',·['../selmethod_8h.xhtml',·1,·'']]],
 448 ····['selmethodevalcontext_284',·['selmethodevalcontext',·['../structgmx_1_1SelMethodEvalContext.xhtml',·1,·'gmx::SelMethodEvalContext'],
448 ····['selmethodevalcontext_284',·['selmethodevalcontext',·['../structgmx_1_1SelMethodEvalContext.xhtml#af7866c2274dc36311bff15ad41a9d66c',·1,·'gmx::SelMethodEvalContext::SelMethodEvalContext()'],449 ········['../structgmx_1_1SelMethodEvalContext.xhtml#af7866c2274dc36311bff15ad41a9d66c',·1,·'gmx::SelMethodEvalContext::SelMethodEvalContext()']
449 ········['../structgmx_1_1SelMethodEvalContext.xhtml',·1,·'gmx::SelMethodEvalContext'] 
450 ····]],450 ····]],
451 ····['selparam_2eh_285',·['selparam.h',·['../selparam_8h.xhtml',·1,·'']]],451 ····['selparam_2eh_285',·['selparam.h',·['../selparam_8h.xhtml',·1,·'']]],
452 ····['selvalue_2ecpp_286',·['selvalue.cpp',·['../selvalue_8cpp.xhtml',·1,·'']]],452 ····['selvalue_2ecpp_286',·['selvalue.cpp',·['../selvalue_8cpp.xhtml',·1,·'']]],
453 ····['selvalue_2eh_287',·['selvalue.h',·['../selvalue_8h.xhtml',·1,·'']]],453 ····['selvalue_2eh_287',·['selvalue.h',·['../selvalue_8h.xhtml',·1,·'']]],
454 ····['sendatom_288',·['sendAtom',·['../structgmx__domdec__specat__comm__t.xhtml#afa82aef6bb5cd350ec8957208baf7e9a',·1,·'gmx_domdec_specat_comm_t']]],454 ····['sendatom_288',·['sendAtom',·['../structgmx__domdec__specat__comm__t.xhtml#afa82aef6bb5cd350ec8957208baf7e9a',·1,·'gmx_domdec_specat_comm_t']]],
455 ····['sendcoordinatestopme_289',·['sendCoordinatesToPme',·['../classgmx_1_1PmePpCommGpu_1_1Impl.xhtml#a62f1a1eff1d210698c8c53876905082f',·1,·'gmx::PmePpCommGpu::Impl']]],455 ····['sendcoordinatestopme_289',·['sendCoordinatesToPme',·['../classgmx_1_1PmePpCommGpu_1_1Impl.xhtml#a62f1a1eff1d210698c8c53876905082f',·1,·'gmx::PmePpCommGpu::Impl']]],
456 ····['sendcoordinatestopmefromcpu_290',·['sendCoordinatesToPmeFromCpu',·['../classgmx_1_1PmePpCommGpu.xhtml#aac4a3a7e70b11f1197826e37bb080bca',·1,·'gmx::PmePpCommGpu']]],456 ····['sendcoordinatestopmefromcpu_290',·['sendCoordinatesToPmeFromCpu',·['../classgmx_1_1PmePpCommGpu.xhtml#aac4a3a7e70b11f1197826e37bb080bca',·1,·'gmx::PmePpCommGpu']]],
Offset 941, 16 lines modifiedOffset 941, 16 lines modified
941 ········['../classgmx_1_1TextLineWrapper.xhtml#acfebeecce32fc98e39ca40d97969a0bf',·1,·'gmx::TextLineWrapper::settings()'],941 ········['../classgmx_1_1TextLineWrapper.xhtml#acfebeecce32fc98e39ca40d97969a0bf',·1,·'gmx::TextLineWrapper::settings()'],
942 ········['../structPmeGpu.xhtml#a7c8b55d63a1ecb7f87328e9ca45043bf',·1,·'PmeGpu::settings']942 ········['../structPmeGpu.xhtml#a7c8b55d63a1ecb7f87328e9ca45043bf',·1,·'PmeGpu::settings']
943 ····]],943 ····]],
944 ····['settings_5f_591',·['settings_',·['../classgmx_1_1internal_1_1BasicHistogramImpl.xhtml#a54026d5b9aeaa1cd702a34756a4c1ce9',·1,·'gmx::internal::BasicHistogramImpl']]],944 ····['settings_5f_591',·['settings_',·['../classgmx_1_1internal_1_1BasicHistogramImpl.xhtml#a54026d5b9aeaa1cd702a34756a4c1ce9',·1,·'gmx::internal::BasicHistogramImpl']]],
945 ····['settitle_592',·['settitle',·['../classgmx_1_1AbstractPlotModule.xhtml#a942f8789698391ed24e252a950a1fa13',·1,·'gmx::AbstractPlotModule::setTitle(const·char·*title)'],945 ····['settitle_592',·['settitle',·['../classgmx_1_1AbstractPlotModule.xhtml#a942f8789698391ed24e252a950a1fa13',·1,·'gmx::AbstractPlotModule::setTitle(const·char·*title)'],
946 ········['../classgmx_1_1AbstractPlotModule.xhtml#ad8e6594e8a2a8864595cd2eacfd8840b',·1,·'gmx::AbstractPlotModule::setTitle(const·std::string·&amp;title)']946 ········['../classgmx_1_1AbstractPlotModule.xhtml#ad8e6594e8a2a8864595cd2eacfd8840b',·1,·'gmx::AbstractPlotModule::setTitle(const·std::string·&amp;title)']
947 ····]],947 ····]],
948 ····['settle_2ecpp_593',·['settle.cpp',·['../settle_8cpp.xhtml',·1,·'(Global·Namespace)'],948 ····['settle_2ecpp_593',·['settle.cpp',·['../tests_2settle_8cpp.xhtml',·1,·'(Global·Namespace)'],
949 ········['../tests_2settle_8cpp.xhtml',·1,·'(Global·Namespace)']949 ········['../settle_8cpp.xhtml',·1,·'(Global·Namespace)']
950 ····]],950 ····]],
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Offset 7, 40 lines modifiedOffset 7, 40 lines modified
7 ····['uint8_1',·['uInt8',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966ab0cffa75aa037e628ccfdf46bcc086ac',·1,·'gmx']]],7 ····['uint8_1',·['uInt8',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966ab0cffa75aa037e628ccfdf46bcc086ac',·1,·'gmx']]],
8 ····['ulptol_5f_2',·['ulpTol_',·['../classgmx_1_1test_1_1SimdBaseTest.xhtml#a9e2abac54e05356364ecdb0751e8665b',·1,·'gmx::test::SimdBaseTest']]],8 ····['ulptol_5f_2',·['ulpTol_',·['../classgmx_1_1test_1_1SimdBaseTest.xhtml#a9e2abac54e05356364ecdb0751e8665b',·1,·'gmx::test::SimdBaseTest']]],
9 ····['ulptolerance_3',·['ulpTolerance',·['../group__module__testutils.xhtml#gaba89bc71f24fe31ec8f9c07835a245fc',·1,·'gmx::test::FloatingPointTolerance']]],9 ····['ulptolerance_3',·['ulpTolerance',·['../group__module__testutils.xhtml#gaba89bc71f24fe31ec8f9c07835a245fc',·1,·'gmx::test::FloatingPointTolerance']]],
10 ····['umbrellagridpoint_4',·['umbrellaGridpoint',·['../classgmx_1_1CoordState.xhtml#a714530cf26b77af8bff5d1318c129b11',·1,·'gmx::CoordState']]],10 ····['umbrellagridpoint_4',·['umbrellaGridpoint',·['../classgmx_1_1CoordState.xhtml#a714530cf26b77af8bff5d1318c129b11',·1,·'gmx::CoordState']]],
11 ····['umbrellaoptions_5',·['UmbrellaOptions',·['../structUmbrellaOptions.xhtml',·1,·'']]],11 ····['umbrellaoptions_5',·['UmbrellaOptions',·['../structUmbrellaOptions.xhtml',·1,·'']]],
12 ····['unavailable_6',·['Unavailable',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888a453e6aa38d87b28ccae545967c53004f',·1,·'device_information.h']]],12 ····['unavailable_6',·['Unavailable',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888a453e6aa38d87b28ccae545967c53004f',·1,·'device_information.h']]],
13 ····['unconstrainedsystemstotest_5fg_7',·['unconstrainedSystemsToTest_g',·['../namespacegmx_1_1test_1_1anonymous__namespace_02minimize_8cpp_03.xhtml#ab01bb0a722ccdd5edb87a7c898af7615',·1,·'gmx::test::anonymous_namespace{minimize.cpp}']]],13 ····['unconstrainedsystemstotest_5fg_7',·['unconstrainedSystemsToTest_g',·['../namespacegmx_1_1test_1_1anonymous__namespace_02minimize_8cpp_03.xhtml#ab01bb0a722ccdd5edb87a7c898af7615',·1,·'gmx::test::anonymous_namespace{minimize.cpp}']]],
 14 ····['undefined_8',·['undefined',·['../namespacegmx_1_1test.xhtml#a5b76a571a22b4c47f7dab283e6674154aec0fc0100c4fc1ce4eea230c3dc10360',·1,·'gmx::test::Undefined'],
14 ····['undefined_8',·['undefined',·['../namespaceanonymous__namespace_02histogram_8cpp_03.xhtml#a5b8a8a888bca187bb11799895c7a766e',·1,·'anonymous_namespace{histogram.cpp}::UNDEFINED'],15 ········['../namespaceanonymous__namespace_02histogram_8cpp_03.xhtml#a5b8a8a888bca187bb11799895c7a766e',·1,·'anonymous_namespace{histogram.cpp}::UNDEFINED']
15 ········['../namespacegmx_1_1test.xhtml#a5b76a571a22b4c47f7dab283e6674154aec0fc0100c4fc1ce4eea230c3dc10360',·1,·'gmx::test::Undefined'] 
16 ····]],16 ····]],
17 ····['uniform_5fload_5fcluster_5fpair_5fdata_9',·['UNIFORM_LOAD_CLUSTER_PAIR_DATA',·['../nbnxm__sycl__kernel__utils_8h.xhtml#ade8af812c46261b419b718d9c9cb14a8',·1,·'nbnxm_sycl_kernel_utils.h']]],17 ····['uniform_5fload_5fcluster_5fpair_5fdata_9',·['UNIFORM_LOAD_CLUSTER_PAIR_DATA',·['../nbnxm__sycl__kernel__utils_8h.xhtml#ade8af812c46261b419b718d9c9cb14a8',·1,·'nbnxm_sycl_kernel_utils.h']]],
18 ····['uniformintdistribution_10',·['uniformintdistribution',·['../classgmx_1_1UniformIntDistribution.xhtml#a790697adc208c8ecf2e9164ea00cf24b',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(result_type·a=0,·result_type·b=std::numeric_limits&lt;·result_type·&gt;::max())'],18 ····['uniformintdistribution_10',·['uniformintdistribution',·['../classgmx_1_1UniformIntDistribution.xhtml#a790697adc208c8ecf2e9164ea00cf24b',·1,·'gmx::UniformIntDistribution::UniformIntDistribution()'],
19 ········['../classgmx_1_1UniformIntDistribution.xhtml#a09808fada94acf89dc12c30310afaeda',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(const·param_type·&amp;param)'], 
20 ········['../classgmx_1_1UniformIntDistribution.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;']19 ········['../classgmx_1_1UniformIntDistribution.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;'],
 20 ········['../classgmx_1_1UniformIntDistribution.xhtml#a09808fada94acf89dc12c30310afaeda',·1,·'gmx::UniformIntDistribution::UniformIntDistribution()']
21 ····]],21 ····]],
22 ····['uniformintdistribution_2ecpp_11',·['uniformintdistribution.cpp',·['../uniformintdistribution_8cpp.xhtml',·1,·'']]],22 ····['uniformintdistribution_2ecpp_11',·['uniformintdistribution.cpp',·['../uniformintdistribution_8cpp.xhtml',·1,·'']]],
23 ····['uniformintdistribution_2eh_12',·['uniformintdistribution.h',·['../uniformintdistribution_8h.xhtml',·1,·'']]],23 ····['uniformintdistribution_2eh_12',·['uniformintdistribution.h',·['../uniformintdistribution_8h.xhtml',·1,·'']]],
24 ····['uniformrealdistribution_13',·['uniformrealdistribution',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;'],24 ····['uniformrealdistribution_13',·['uniformrealdistribution',·['../classgmx_1_1UniformRealDistribution.xhtml#a8a58a25b5bc17882dfc3671530d1aad3',·1,·'gmx::UniformRealDistribution::UniformRealDistribution()'],
25 ········['../classgmx_1_1UniformRealDistribution.xhtml#a8a58a25b5bc17882dfc3671530d1aad3',·1,·'gmx::UniformRealDistribution::UniformRealDistribution(const·param_type·&amp;param)'],25 ········['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;'],
26 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf980964b1ce2f1fade69a0578b25e33',·1,·'gmx::UniformRealDistribution::UniformRealDistribution(result_type·a=0.0,·result_type·b=1.0)']26 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf980964b1ce2f1fade69a0578b25e33',·1,·'gmx::UniformRealDistribution::UniformRealDistribution()']
27 ····]],27 ····]],
28 ····['uniformrealdistribution_2ecpp_14',·['uniformrealdistribution.cpp',·['../uniformrealdistribution_8cpp.xhtml',·1,·'']]],28 ····['uniformrealdistribution_2ecpp_14',·['uniformrealdistribution.cpp',·['../uniformrealdistribution_8cpp.xhtml',·1,·'']]],
29 ····['uniformrealdistribution_2eh_15',·['uniformrealdistribution.h',·['../uniformrealdistribution_8h.xhtml',·1,·'']]],29 ····['uniformrealdistribution_2eh_15',·['uniformrealdistribution.h',·['../uniformrealdistribution_8h.xhtml',·1,·'']]],
30 ····['unionfind_2ecpp_16',·['unionfind.cpp',·['../unionfind_8cpp.xhtml',·1,·'']]],30 ····['unionfind_2ecpp_16',·['unionfind.cpp',·['../unionfind_8cpp.xhtml',·1,·'']]],
31 ····['unionfind_2eh_17',·['unionfind.h',·['../unionfind_8h.xhtml',·1,·'']]],31 ····['unionfind_2eh_17',·['unionfind.h',·['../unionfind_8h.xhtml',·1,·'']]],
32 ····['unionfinder_18',·['UnionFinder',·['../classgmx_1_1UnionFinder.xhtml',·1,·'gmx']]],32 ····['unionfinder_18',·['UnionFinder',·['../classgmx_1_1UnionFinder.xhtml',·1,·'gmx']]],
33 ····['unique_5fcptr_19',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],33 ····['unique_5fcptr_19',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],
34 ····['unique_5fcptr_2eh_20',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],34 ····['unique_5fcptr_2eh_20',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],
35 ····['unit_21',·['unit',·['../structUmbrellaOptions.xhtml#ae5d2dca38270c084eb3386aa26b9b959',·1,·'UmbrellaOptions::unit'],35 ····['unit_21',·['unit',·['../structUmbrellaOptions.xhtml#ae5d2dca38270c084eb3386aa26b9b959',·1,·'UmbrellaOptions::unit'],
36 ········['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm::unit()']36 ········['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm::unit()']
37 ····]],37 ····]],
 38 ····['unitcellinfo_22',·['unitcellinfo',·['../structUnitCellInfo.xhtml',·1,·'UnitCellInfo'],
38 ····['unitcellinfo_22',·['unitcellinfo',·['../structUnitCellInfo.xhtml#a9d3636ef8212130c876d2cbd16dcc69a',·1,·'UnitCellInfo::UnitCellInfo()'],39 ········['../structUnitCellInfo.xhtml#a9d3636ef8212130c876d2cbd16dcc69a',·1,·'UnitCellInfo::UnitCellInfo()']
39 ········['../structUnitCellInfo.xhtml',·1,·'UnitCellInfo'] 
40 ····]],40 ····]],
41 ····['unitcelliscompact_23',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],41 ····['unitcelliscompact_23',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],
42 ····['unitcellisrectangular_24',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],42 ····['unitcellisrectangular_24',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],
43 ····['unitcellistriclinic_25',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],43 ····['unitcellistriclinic_25',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],
44 ····['unitcelltype_26',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],44 ····['unitcelltype_26',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
45 ····['unitcelltypenames_27',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],45 ····['unitcelltypenames_27',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
46 ····['unittest_5fmain_2ecpp_28',·['unittest_main.cpp',·['../unittest__main_8cpp.xhtml',·1,·'']]],46 ····['unittest_5fmain_2ecpp_28',·['unittest_main.cpp',·['../unittest__main_8cpp.xhtml',·1,·'']]],
Offset 99, 16 lines modifiedOffset 99, 16 lines modified
99 ····['updateglobalstate_72',·['updateGlobalState',·['../namespacegmx.xhtml#a109fb025f86dc445f7b53afb3f9af2b3',·1,·'gmx']]],99 ····['updateglobalstate_72',·['updateGlobalState',·['../namespacegmx.xhtml#a109fb025f86dc445f7b53afb3f9af2b3',·1,·'gmx']]],
100 ····['updategroups_73',·['updategroups',·['../classgmx_1_1UpdateGroups.xhtml',·1,·'gmx::UpdateGroups'],100 ····['updategroups_73',·['updategroups',·['../classgmx_1_1UpdateGroups.xhtml',·1,·'gmx::UpdateGroups'],
101 ········['../classgmx_1_1UpdateGroups.xhtml#ae953f890b3234f0a98247d77201f2c5e',·1,·'gmx::UpdateGroups::UpdateGroups(std::vector&lt;·RangePartitioning·&gt;·&amp;&amp;updateGroupingPerMoleculeType,·real·maxUpdateGroupRadius)'],101 ········['../classgmx_1_1UpdateGroups.xhtml#ae953f890b3234f0a98247d77201f2c5e',·1,·'gmx::UpdateGroups::UpdateGroups(std::vector&lt;·RangePartitioning·&gt;·&amp;&amp;updateGroupingPerMoleculeType,·real·maxUpdateGroupRadius)'],
102 ········['../classgmx_1_1UpdateGroups.xhtml#aec6aff66b1a4e1d52f8c164e99579b85',·1,·'gmx::UpdateGroups::UpdateGroups()=default']102 ········['../classgmx_1_1UpdateGroups.xhtml#aec6aff66b1a4e1d52f8c164e99579b85',·1,·'gmx::UpdateGroups::UpdateGroups()=default']
103 ····]],103 ····]],
104 ····['updategroups_2ecpp_74',·['updategroups.cpp',·['../tests_2updategroups_8cpp.xhtml',·1,·'']]],104 ····['updategroups_2ecpp_74',·['updategroups.cpp',·['../tests_2updategroups_8cpp.xhtml',·1,·'']]],
105 ····['updategroups_2eh_75',·['updategroups.h',·['../updategroups_8h.xhtml',·1,·'']]],105 ····['updategroups_2eh_75',·['updategroups.h',·['../updategroups_8h.xhtml',·1,·'']]],
 106 ····['updategroupscog_76',·['updategroupscog',·['../classgmx_1_1UpdateGroupsCog.xhtml',·1,·'gmx::UpdateGroupsCog'],
106 ····['updategroupscog_76',·['updategroupscog',·['../classgmx_1_1UpdateGroupsCog.xhtml#a2d5ea1c35c8fa0fa09a22a4924306974',·1,·'gmx::UpdateGroupsCog::UpdateGroupsCog()'],107 ········['../classgmx_1_1UpdateGroupsCog.xhtml#a2d5ea1c35c8fa0fa09a22a4924306974',·1,·'gmx::UpdateGroupsCog::UpdateGroupsCog()']
107 ········['../classgmx_1_1UpdateGroupsCog.xhtml',·1,·'gmx::UpdateGroupsCog'] 
108 ····]],108 ····]],
109 ····['updategroupscog_2eh_77',·['updategroupscog.h',·['../updategroupscog_8h.xhtml',·1,·'']]],109 ····['updategroupscog_2eh_77',·['updategroupscog.h',·['../updategroupscog_8h.xhtml',·1,·'']]],
110 ····['updategroupstest_78',·['UpdateGroupsTest',·['../classgmx_1_1anonymous__namespace_02updategroups_8cpp_03_1_1UpdateGroupsTest.xhtml',·1,·'gmx::anonymous_namespace{updategroups.cpp}']]],110 ····['updategroupstest_78',·['UpdateGroupsTest',·['../classgmx_1_1anonymous__namespace_02updategroups_8cpp_03_1_1UpdateGroupsTest.xhtml',·1,·'gmx::anonymous_namespace{updategroups.cpp}']]],
111 ····['updatehaveinteractions_79',·['updateHaveInteractions',·['../classgmx_1_1ListedForcesGpu_1_1Impl.xhtml#a6d0d913fb45e71390d6104f908de3c71',·1,·'gmx::ListedForcesGpu::Impl']]],111 ····['updatehaveinteractions_79',·['updateHaveInteractions',·['../classgmx_1_1ListedForcesGpu_1_1Impl.xhtml#a6d0d913fb45e71390d6104f908de3c71',·1,·'gmx::ListedForcesGpu::Impl']]],
112 ····['updatehistory_80',·['updatehistory',·['../classgmx_1_1Awh.xhtml#ad138cec7cc1fefd7c1787d5f94279494',·1,·'gmx::Awh::updateHistory()'],112 ····['updatehistory_80',·['updatehistory',·['../classgmx_1_1Awh.xhtml#ad138cec7cc1fefd7c1787d5f94279494',·1,·'gmx::Awh::updateHistory()'],
113 ········['../structt__oriresdata.xhtml#a7806904b5f7dcb25d5dec4555be7b5ac',·1,·'t_oriresdata::updateHistory()'],113 ········['../structt__oriresdata.xhtml#a7806904b5f7dcb25d5dec4555be7b5ac',·1,·'t_oriresdata::updateHistory()'],
114 ········['../classgmx_1_1Bias.xhtml#ae2bb3f5ea0a91001ddcbf01dbedbe396',·1,·'gmx::Bias::updateHistory()'],114 ········['../classgmx_1_1Bias.xhtml#ae2bb3f5ea0a91001ddcbf01dbedbe396',·1,·'gmx::Bias::updateHistory()'],
Offset 120, 32 lines modifiedOffset 120, 32 lines modified
120 ········['../classgmx_1_1test_1_1internal_1_1TestReferenceDataImpl.xhtml#a065a3c65957021f231760e63f62b0382',·1,·'gmx::test::internal::TestReferenceDataImpl::updateMismatchingEntries_']120 ········['../classgmx_1_1test_1_1internal_1_1TestReferenceDataImpl.xhtml#a065a3c65957021f231760e63f62b0382',·1,·'gmx::test::internal::TestReferenceDataImpl::updateMismatchingEntries_']
121 ····]],121 ····]],
122 ····['updatepmfunvisited_84',·['updatePmfUnvisited',·['../classgmx_1_1PointState.xhtml#aabd90b7ac4e2ce2db311e22aabddc811',·1,·'gmx::PointState']]],122 ····['updatepmfunvisited_84',·['updatePmfUnvisited',·['../classgmx_1_1PointState.xhtml#aabd90b7ac4e2ce2db311e22aabddc811',·1,·'gmx::PointState']]],
123 ····['updatepositions_85',·['updatePositions',·['../namespacegmx.xhtml#a5d079b5d5fedb7c55a119e1342cb7fd8',·1,·'gmx']]],123 ····['updatepositions_85',·['updatePositions',·['../namespacegmx.xhtml#a5d079b5d5fedb7c55a119e1342cb7fd8',·1,·'gmx']]],
124 ····['updateprevsteppullcom_86',·['updatePrevStepPullCom',·['../pull_8h.xhtml#a95ef443e2830253d2aef461a2f811c4e',·1,·'pull.h']]],124 ····['updateprevsteppullcom_86',·['updatePrevStepPullCom',·['../pull_8h.xhtml#a95ef443e2830253d2aef461a2f811c4e',·1,·'pull.h']]],
125 ····['updateprobabilityweightsandconvolvedbias_87',·['updateProbabilityWeightsAndConvolvedBias',·['../classgmx_1_1BiasState.xhtml#a9f7401159d5f59b63c09e34829643156',·1,·'gmx::BiasState']]],125 ····['updateprobabilityweightsandconvolvedbias_87',·['updateProbabilityWeightsAndConvolvedBias',·['../classgmx_1_1BiasState.xhtml#a9f7401159d5f59b63c09e34829643156',·1,·'gmx::BiasState']]],
126 ····['updatereferencetemperature_88',·['updatereferencetemperature',·['../classgmx_1_1NoseHooverGroup.xhtml#aa3d71e0bea4cfdf3b6120a0cb1993acc',·1,·'gmx::NoseHooverGroup::updateReferenceTemperature()'],126 ····['updatereferencetemperature_88',·['updatereferencetemperature',·['../classgmx_1_1NoseHooverGroup.xhtml#aa3d71e0bea4cfdf3b6120a0cb1993acc',·1,·'gmx::NoseHooverGroup::updateReferenceTemperature()'],
 127 ········['../classgmx_1_1StatePropagatorData.xhtml#aee30a9b7c159fb0a9bf500e79c5b36ad',·1,·'gmx::StatePropagatorData::updateReferenceTemperature()'],
127 ········['../classgmx_1_1StatePropagatorData_1_1ReferenceTemperatureHelper.xhtml#af1c1de5aaf87c8f24affe49bde37603b',·1,·'gmx::StatePropagatorData::ReferenceTemperatureHelper::updateReferenceTemperature()'],128 ········['../classgmx_1_1StatePropagatorData_1_1ReferenceTemperatureHelper.xhtml#af1c1de5aaf87c8f24affe49bde37603b',·1,·'gmx::StatePropagatorData::ReferenceTemperatureHelper::updateReferenceTemperature()']
128 ········['../classgmx_1_1StatePropagatorData.xhtml#aee30a9b7c159fb0a9bf500e79c5b36ad',·1,·'gmx::StatePropagatorData::updateReferenceTemperature()'] 
129 ····]],129 ····]],
130 ····['updatereferencetemperatureandintegral_89',·['updatereferencetemperatureandintegral',·['../classgmx_1_1ITemperatureCouplingImpl.xhtml#a67d316d4990f6b3e3b91d4293102da71',·1,·'gmx::ITemperatureCouplingImpl::updateReferenceTemperatureAndIntegral()'],130 ····['updatereferencetemperatureandintegral_89',·['updatereferencetemperatureandintegral',·['../classgmx_1_1NoseHooverTemperatureCoupling.xhtml#a19f20b178c4f10eb2de9ec991438d9f5',·1,·'gmx::NoseHooverTemperatureCoupling::updateReferenceTemperatureAndIntegral()'],
131 ········['../classgmx_1_1VRescaleTemperatureCoupling.xhtml#ab4efc16ccfe24d5c4a080b6ef9027250',·1,·'gmx::VRescaleTemperatureCoupling::updateReferenceTemperatureAndIntegral()'], 
132 ········['../classgmx_1_1BerendsenTemperatureCoupling.xhtml#ad79e818a438bda7940ddf37e004c8a82',·1,·'gmx::BerendsenTemperatureCoupling::updateReferenceTemperatureAndIntegral()'],131 ········['../classgmx_1_1BerendsenTemperatureCoupling.xhtml#ad79e818a438bda7940ddf37e004c8a82',·1,·'gmx::BerendsenTemperatureCoupling::updateReferenceTemperatureAndIntegral()'],
 132 ········['../classgmx_1_1VRescaleTemperatureCoupling.xhtml#ab4efc16ccfe24d5c4a080b6ef9027250',·1,·'gmx::VRescaleTemperatureCoupling::updateReferenceTemperatureAndIntegral()'],
133 ········['../classgmx_1_1NoseHooverTemperatureCoupling.xhtml#a19f20b178c4f10eb2de9ec991438d9f5',·1,·'gmx::NoseHooverTemperatureCoupling::updateReferenceTemperatureAndIntegral()']133 ········['../classgmx_1_1ITemperatureCouplingImpl.xhtml#a67d316d4990f6b3e3b91d4293102da71',·1,·'gmx::ITemperatureCouplingImpl::updateReferenceTemperatureAndIntegral()']
134 ····]],134 ····]],
135 ····['updatesharedcorrelationtensortimeintegral_90',·['updateSharedCorrelationTensorTimeIntegral',·['../classgmx_1_1BiasState.xhtml#ab7dfefc2c90ee279effebe810c485dbc',·1,·'gmx::BiasState']]],135 ····['updatesharedcorrelationtensortimeintegral_90',·['updateSharedCorrelationTensorTimeIntegral',·['../classgmx_1_1BiasState.xhtml#ab7dfefc2c90ee279effebe810c485dbc',·1,·'gmx::BiasState']]],
136 ····['updatetargetweight_91',·['updateTargetWeight',·['../classgmx_1_1PointState.xhtml#a1d57397ae942af129a982a9f333fef51',·1,·'gmx::PointState']]],136 ····['updatetargetweight_91',·['updateTargetWeight',·['../classgmx_1_1PointState.xhtml#a1d57397ae942af129a982a9f333fef51',·1,·'gmx::PointState']]],
 137 ····['updatevelocities_92',·['updatevelocities',·['../namespacegmx.xhtml#a2b97181f1d88633664f339242db99d74',·1,·'gmx::updateVelocities()'],
137 ····['updatevelocities_92',·['updatevelocities',·['../structgmx_1_1test_1_1anonymous__namespace_02settle_8cpp_03_1_1SettleTestParameters.xhtml#aaaeba6d14001c6c245e8af771389df3c',·1,·'gmx::test::anonymous_namespace{settle.cpp}::SettleTestParameters::updateVeloc[·...·truncated·by·diffoscope;·len:·8,·SHA:·f119fcc8d4740aeaae64ae5c30b1a91db2b6a515e121a4b58545fd450ce030f3·...·]138 ········['../structgmx_1_1test_1_1anonymous__namespace_02settle_8cpp_03_1_1SettleTestParameters.xhtml#aaaeba6d14001c6c245e8af771389df3c',·1,·'gmx::test::anonymous_namespace{settle.cpp}::SettleTestParameters::updateVelocities']
138 ········['../namespacegmx.xhtml#a2b97181f1d88633664f339242db99d74',·1,·'gmx::updateVelocities()'] 
139 ····]],139 ····]],
140 ····['updateweight_93',·['updateWeight',·['../classgmx_1_1BiasParams.xhtml#a0592d5d3d02e79af3d0cd4ee7346a981',·1,·'gmx::BiasParams']]],140 ····['updateweight_93',·['updateWeight',·['../classgmx_1_1BiasParams.xhtml#a0592d5d3d02e79af3d0cd4ee7346a981',·1,·'gmx::BiasParams']]],
141 ····['updatewithdatapoint_94',·['updateWithDataPoint',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a5293fc09bb63cc379eed9ca1fa20c760',·1,·'gmx::ExponentialMovingAverage']]],141 ····['updatewithdatapoint_94',·['updateWithDataPoint',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a5293fc09bb63cc379eed9ca1fa20c760',·1,·'gmx::ExponentialMovingAverage']]],
142 ····['updatewithnewsampling_95',·['updateWithNewSampling',·['../classgmx_1_1PointState.xhtml#a9d33b40718ee061fac006ee0829d59f0',·1,·'gmx::PointState']]],142 ····['updatewithnewsampling_95',·['updateWithNewSampling',·['../classgmx_1_1PointState.xhtml#a9d33b40718ee061fac006ee0829d59f0',·1,·'gmx::PointState']]],
143 ····['upper_96',·['upper',·['../structNbnxm_1_1BoundingBox.xhtml#a3ddf5a630382be02a95f35446b931e59',·1,·'Nbnxm::BoundingBox::upper'], 
144 ········['../structNbnxm_1_1BoundingBox1D.xhtml#a928ea1f9f899c74370ded36f3a1a2332',·1,·'Nbnxm::BoundingBox1D::upper']143 ····['upper_96',·['upper',·['../structNbnxm_1_1BoundingBox1D.xhtml#a928ea1f9f899c74370ded36f3a1a2332',·1,·'Nbnxm::BoundingBox1D::upper'],
 144 ········['../structNbnxm_1_1BoundingBox.xhtml#a3ddf5a630382be02a95f35446b931e59',·1,·'Nbnxm::BoundingBox::upper']
145 ····]],145 ····]],
146 ····['uppercorner_97',·['upperCorner',·['../structNbnxm_1_1Grid_1_1Dimensions.xhtml#a594a110364df1aa0fd8b43dbb7f08192',·1,·'Nbnxm::Grid::Dimensions']]],146 ····['uppercorner_97',·['upperCorner',·['../structNbnxm_1_1Grid_1_1Dimensions.xhtml#a594a110364df1aa0fd8b43dbb7f08192',·1,·'Nbnxm::Grid::Dimensions']]],
147 ····['upstring_98',·['upstring',·['../cstringutil_8h.xhtml#a74173c7afe5600452edf4956ae58bbe8',·1,·'cstringutil.cpp']]],147 ····['upstring_98',·['upstring',·['../cstringutil_8h.xhtml#a74173c7afe5600452edf4956ae58bbe8',·1,·'cstringutil.cpp']]],
148 ····['usage_99',·['Usage',·['../page_analysisnbsearch.xhtml#autotoc_md78',·1,·'']]],148 ····['usage_99',·['Usage',·['../page_analysisnbsearch.xhtml#autotoc_md78',·1,·'']]],
149 ····['use_100',·['use',·['../structgmx_1_1InterdependentTask.xhtml#afbdcad38692a5a9b5590f3731023d98d',·1,·'gmx::InterdependentTask']]],149 ····['use_100',·['use',·['../structgmx_1_1InterdependentTask.xhtml#afbdcad38692a5a9b5590f3731023d98d',·1,·'gmx::InterdependentTask']]],
150 ····['use_20in_20practice_101',·['The·subset·you·should·use·in·practice',·['../page_simd.xhtml#autotoc_md63',·1,·'']]],150 ····['use_20in_20practice_101',·['The·subset·you·should·use·in·practice',·['../page_simd.xhtml#autotoc_md63',·1,·'']]],
151 ····['use_20of_20awh_20in_20mdrun_102',·['Use·of·AWH·in·mdrun',·['../page_awh.xhtml#autotoc_md2',·1,·'']]],151 ····['use_20of_20awh_20in_20mdrun_102',·['Use·of·AWH·in·mdrun',·['../page_awh.xhtml#autotoc_md2',·1,·'']]],
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Offset 360, 16 lines modifiedOffset 360, 16 lines modified
360 ········['../page_nbnxm.xhtml',·1,·'The·NxM·atom-cluster·non-bonded·algorithm'],360 ········['../page_nbnxm.xhtml',·1,·'The·NxM·atom-cluster·non-bonded·algorithm'],
361 ········['../page_modularsimulator.xhtml#autotoc_md14',·1,·'The·simulator·algorithm']361 ········['../page_modularsimulator.xhtml#autotoc_md14',·1,·'The·simulator·algorithm']
362 ····]],362 ····]],
363 ····['algorithm_20builder_221',·['Simulator·algorithm·builder',·['../page_modularsimulator.xhtml#autotoc_md38',·1,·'']]],363 ····['algorithm_20builder_221',·['Simulator·algorithm·builder',·['../page_modularsimulator.xhtml#autotoc_md38',·1,·'']]],
364 ····['align_5fstep_222',·['ALIGN_STEP',·['../mempool_8cpp.xhtml#a0cd40f06d30a789ea4b0a86f1bb08e20',·1,·'mempool.cpp']]],364 ····['align_5fstep_222',·['ALIGN_STEP',·['../mempool_8cpp.xhtml#a0cd40f06d30a789ea4b0a86f1bb08e20',·1,·'mempool.cpp']]],
365 ····['alignedallocationpolicy_223',·['AlignedAllocationPolicy',·['../classgmx_1_1AlignedAllocationPolicy.xhtml',·1,·'gmx']]],365 ····['alignedallocationpolicy_223',·['AlignedAllocationPolicy',·['../classgmx_1_1AlignedAllocationPolicy.xhtml',·1,·'gmx']]],
366 ····['alignedallocator_224',·['AlignedAllocator',·['../namespacegmx.xhtml#ac3ca6adcfda5170180c2140c7b2f9d47',·1,·'gmx']]],366 ····['alignedallocator_224',·['AlignedAllocator',·['../namespacegmx.xhtml#ac3ca6adcfda5170180c2140c7b2f9d47',·1,·'gmx']]],
367 ····['alignedallocator_2ecpp_225',·['alignedallocator.cpp',·['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],367 ····['alignedallocator_2ecpp_225',·['alignedallocator.cpp',·['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],
368 ········['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']368 ········['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']
369 ····]],369 ····]],
370 ····['alignedallocator_2eh_226',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],370 ····['alignedallocator_2eh_226',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],
371 ····['alignedallocator_5fimpl_2eh_227',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]],371 ····['alignedallocator_5fimpl_2eh_227',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]],
372 ····['alignedarray_3c_20double_2c_20n_20_3e_228',·['AlignedArray&lt;·double,·N·&gt;',·['../structgmx_1_1AlignedArray_3_01double_00_01N_01_4.xhtml',·1,·'gmx']]],372 ····['alignedarray_3c_20double_2c_20n_20_3e_228',·['AlignedArray&lt;·double,·N·&gt;',·['../structgmx_1_1AlignedArray_3_01double_00_01N_01_4.xhtml',·1,·'gmx']]],
373 ····['alignedarray_3c_20float_2c_20n_20_3e_229',·['AlignedArray&lt;·float,·N·&gt;',·['../structgmx_1_1AlignedArray_3_01float_00_01N_01_4.xhtml',·1,·'gmx']]],373 ····['alignedarray_3c_20float_2c_20n_20_3e_229',·['AlignedArray&lt;·float,·N·&gt;',·['../structgmx_1_1AlignedArray_3_01float_00_01N_01_4.xhtml',·1,·'gmx']]],
374 ····['alignedfreegeneric_230',·['alignedFreeGeneric',·['../namespacegmx_1_1anonymous__namespace_02alignedallocator_8cpp_03.xhtml#ac11fa1cae95de1d83f00000c40f0cfde',·1,·'gmx::anonymous_namespace{alignedallocator.cpp}']]],374 ····['alignedfreegeneric_230',·['alignedFreeGeneric',·['../namespacegmx_1_1anonymous__namespace_02alignedallocator_8cpp_03.xhtml#ac11fa1cae95de1d83f00000c40f0cfde',·1,·'gmx::anonymous_namespace{alignedallocator.cpp}']]],
375 ····['alignedmallocgeneric_231',·['alignedMallocGeneric',·['../namespacegmx_1_1anonymous__namespace_02alignedallocator_8cpp_03.xhtml#ad8983444d03b6578afb5e28f9ad8dfa8',·1,·'gmx::anonymous_namespace{alignedallocator.cpp}']]],375 ····['alignedmallocgeneric_231',·['alignedMallocGeneric',·['../namespacegmx_1_1anonymous__namespace_02alignedallocator_8cpp_03.xhtml#ad8983444d03b6578afb5e28f9ad8dfa8',·1,·'gmx::anonymous_namespace{alignedallocator.cpp}']]],
Offset 469, 73 lines modifiedOffset 469, 73 lines modified
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470 ····['analysisdata_2ecpp_284',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],470 ····['analysisdata_2ecpp_284',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],
471 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']471 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']
472 ····]],472 ····]],
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65 ····['basic_30',·['basic',·['../classgmx_1_1HardwareTopology.xhtml#aa94ffc2c936d76ba16f1938f449cfaa8a972e73b7a882d0802a4e3a16946a2f94',·1,·'gmx::HardwareTopology::Basic'],65 ····['basic_30',·['basic',·['../classgmx_1_1HardwareTopology.xhtml#aa94ffc2c936d76ba16f1938f449cfaa8a972e73b7a882d0802a4e3a16946a2f94',·1,·'gmx::HardwareTopology::Basic'],
66 ········['../classgmx_1_1SelectionCollection_1_1Impl.xhtml#a2b56c1edc3a7dd352db9cf7bc94673d7a972e73b7a882d0802a4e3a16946a2f94',·1,·'gmx::SelectionCollection::Impl::Basic']66 ········['../classgmx_1_1SelectionCollection_1_1Impl.xhtml#a2b56c1edc3a7dd352db9cf7bc94673d7a972e73b7a882d0802a4e3a16946a2f94',·1,·'gmx::SelectionCollection::Impl::Basic']
67 ····]],67 ····]],
68 ····['basic_5fmdspan_31',·['basic_mdspan',·['../classgmx_1_1basic__mdspan.xhtml#a1af35e8aadb8ddbe4a239879e3db6238',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan&lt;·OtherElementType,·OtherExtents,·OtherLayoutPolicy,·OtherAccessor·&gt;·&amp;rhs)·noexcept'], 
69 ········['../classgmx_1_1basic__mdspan.xhtml#af91e1c5db6aa3eb085defcaf777c6fd3',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·IndexType...·DynamicExtents)·noexcept'],68 ····['basic_5fmdspan_31',·['basic_mdspan',·['../classgmx_1_1basic__mdspan.xhtml#af91e1c5db6aa3eb085defcaf777c6fd3',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·IndexType...·DynamicExtents)·noexcept'],
70 ········['../classgmx_1_1basic__mdspan.xhtml#a7c22975cf4760a9f66be3e20d83e1e39',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·std::array&lt;·ptrdiff_t,·extents_type::rank_dynamic()&gt;·&amp;dynamic_extents)'],69 ········['../classgmx_1_1basic__mdspan.xhtml#a7c22975cf4760a9f66be3e20d83e1e39',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·std::array&lt;·ptrdiff_t,·extents_type::rank_dynamic()&gt;·&amp;dynamic_extents)'],
71 ········['../classgmx_1_1basic__mdspan.xhtml#ad98e5109d35223338f274e3bdd850622',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&amp;m)·noexcept'],70 ········['../classgmx_1_1basic__mdspan.xhtml#ad98e5109d35223338f274e3bdd850622',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&amp;m)·noexcept'],
72 ········['../classgmx_1_1basic__mdspan.xhtml#a869a9eefe1ee5fdbe009f0970533b6c4',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&amp;m,·const·accessor_type·&amp;a)·noexcept'],71 ········['../classgmx_1_1basic__mdspan.xhtml#a869a9eefe1ee5fdbe009f0970533b6c4',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&amp;m,·const·accessor_type·&amp;a)·noexcept'],
73 ········['../classgmx_1_1basic__mdspan.xhtml#a3fb425dfe9f5d47d8575a3a5ffe15356',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan·&amp;other)·noexcept=default'], 
74 ········['../classgmx_1_1basic__mdspan.xhtml#aaff0fad86e9316fd92ad9ed713522e62',·1,·'gmx::basic_mdspan::basic_mdspan(U·&amp;&amp;other)'],72 ········['../classgmx_1_1basic__mdspan.xhtml#aaff0fad86e9316fd92ad9ed713522e62',·1,·'gmx::basic_mdspan::basic_mdspan(U·&amp;&amp;other)'],
75 ········['../classgmx_1_1basic__mdspan.xhtml#a96da2575cb94ba65feb904f78a2bb5eb',·1,·'gmx::basic_mdspan::basic_mdspan(const·U·&amp;other)'],73 ········['../classgmx_1_1basic__mdspan.xhtml#a96da2575cb94ba65feb904f78a2bb5eb',·1,·'gmx::basic_mdspan::basic_mdspan(const·U·&amp;other)'],
 74 ········['../classgmx_1_1basic__mdspan.xhtml#a1af35e8aadb8ddbe4a239879e3db6238',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan&lt;·OtherElementType,·OtherExtents,·OtherLayoutPolicy,·OtherAccessor·&gt;·&amp;rhs)·noexcept'],
 75 ········['../classgmx_1_1basic__mdspan.xhtml#a3fb425dfe9f5d47d8575a3a5ffe15356',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan·&amp;other)·noexcept=default'],
76 ········['../classgmx_1_1basic__mdspan.xhtml#aee5fbcbcd53cd39660f4a224aa28055b',·1,·'gmx::basic_mdspan::basic_mdspan(basic_mdspan·&amp;&amp;other)·noexcept=default'],76 ········['../classgmx_1_1basic__mdspan.xhtml#aee5fbcbcd53cd39660f4a224aa28055b',·1,·'gmx::basic_mdspan::basic_mdspan(basic_mdspan·&amp;&amp;other)·noexcept=default'],
77 ········['../classgmx_1_1basic__mdspan.xhtml#a023bf1df41290714a1eb67ee9a952ef0',·1,·'gmx::basic_mdspan::basic_mdspan()·noexcept'],77 ········['../classgmx_1_1basic__mdspan.xhtml#a023bf1df41290714a1eb67ee9a952ef0',·1,·'gmx::basic_mdspan::basic_mdspan()·noexcept'],
78 ········['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx::basic_mdspan&lt;·ElementType,·Extents,·LayoutPolicy,·AccessorPolicy·&gt;']78 ········['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx::basic_mdspan&lt;·ElementType,·Extents,·LayoutPolicy,·AccessorPolicy·&gt;']
79 ····]],79 ····]],
80 ····['basic_5fmdspan_3c_20value_5ftype_2c_20dynamic_5fextents_5ftype_2c_20layout_5fright_20_3e_32',·['basic_mdspan&lt;·value_type,·dynamic_extents_type,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],80 ····['basic_5fmdspan_3c_20value_5ftype_2c_20dynamic_5fextents_5ftype_2c_20layout_5fright_20_3e_32',·['basic_mdspan&lt;·value_type,·dynamic_extents_type,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
81 ····['basic_5fmdspan_3c_20value_5ftype_2c_20extents_2c_20layout_5fright_20_3e_33',·['basic_mdspan&lt;·value_type,·Extents,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],81 ····['basic_5fmdspan_3c_20value_5ftype_2c_20extents_2c_20layout_5fright_20_3e_33',·['basic_mdspan&lt;·value_type,·Extents,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
82 ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_2c_20layout_5fright_20_3e_34',·['basic_mdspan&lt;·value_type,·gmx::extents,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],82 ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_2c_20layout_5fright_20_3e_34',·['basic_mdspan&lt;·value_type,·gmx::extents,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
83 ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_3c_20dynamic_5fextent_2c_20dynamic_5fextent_20_3e_2c_20layout_5fright_20_3e_35',·['basic_mdspan&lt;·value_type,·gmx::extents&lt;·dynamic_extent,·dynamic_extent·&gt;,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],83 ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_3c_20dynamic_5fextent_2c_20dynamic_5fextent_20_3e_2c_20layout_5fright_20_3e_35',·['basic_mdspan&lt;·value_type,·gmx::extents&lt;·dynamic_extent,·dynamic_extent·&gt;,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
84 ····['basic_5fmdspan_3c_20value_5ftype_2c_20static_5fextents_5ftype_2c_20layout_5fright_20_3e_36',·['basic_mdspan&lt;·value_type,·static_extents_type,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],84 ····['basic_5fmdspan_3c_20value_5ftype_2c_20static_5fextents_5ftype_2c_20layout_5fright_20_3e_36',·['basic_mdspan&lt;·value_type,·static_extents_type,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
85 ····['basicaveragehistogrammodule_37',·['basicaveragehistogrammodule',·['../classgmx_1_1internal_1_1BasicAverageHistogramModule.xhtml',·1,·'gmx::internal::BasicAverageHistogramModule'],85 ····['basicaveragehistogrammodule_37',·['basicaveragehistogrammodule',·['../classgmx_1_1internal_1_1BasicAverageHistogramModule.xhtml',·1,·'gmx::internal::BasicAverageHistogramModule'],
86 ········['../classgmx_1_1internal_1_1BasicAverageHistogramModule.xhtml#a54f473e0e65a37bafd96e64187ff3737',·1,·'gmx::internal::BasicAverageHistogramModule::BasicAverageHistogramModule()']86 ········['../classgmx_1_1internal_1_1BasicAverageHistogramModule.xhtml#a54f473e0e65a37bafd96e64187ff3737',·1,·'gmx::internal::BasicAverageHistogramModule::BasicAverageHistogramModule()']
87 ····]],87 ····]],
88 ····['basicaveragehistogrammodulepointer_38',·['BasicAverageHistogramModulePointer',·['../classgmx_1_1internal_1_1BasicHistogramImpl.xhtml#a5339c7bb7559827e38bb63f8d824a276',·1,·'gmx::internal::BasicHistogramImpl']]],88 ····['basicaveragehistogrammodulepointer_38',·['BasicAverageHistogramModulePointer',·['../classgmx_1_1internal_1_1BasicHistogramImpl.xhtml#a5339c7bb7559827e38bb63f8d824a276',·1,·'gmx::internal::BasicHistogramImpl']]],
89 ····['basichistogramimpl_39',·['basichistogramimpl',·['../classgmx_1_1internal_1_1BasicHistogramImpl.xhtml',·1,·'gmx::internal::BasicHistogramImpl'], 
90 ········['../classgmx_1_1internal_1_1BasicHistogramImpl.xhtml#acd3fd16453a6ce448dc27f6be4d29c69',·1,·'gmx::internal::BasicHistogramImpl::BasicHistogramImpl()']89 ····['basichistogramimpl_39',·['basichistogramimpl',·['../classgmx_1_1internal_1_1BasicHistogramImpl.xhtml#acd3fd16453a6ce448dc27f6be4d29c69',·1,·'gmx::internal::BasicHistogramImpl::BasicHistogramImpl()'],
 90 ········['../classgmx_1_1internal_1_1BasicHistogramImpl.xhtml',·1,·'gmx::internal::BasicHistogramImpl']
91 ····]],91 ····]],
92 ····['basicmatrix3x3_40',·['BasicMatrix3x3',·['../namespacegmx.xhtml#a6ec53a17a29b3d233fdfbdc4e273d08d',·1,·'gmx']]],92 ····['basicmatrix3x3_40',·['BasicMatrix3x3',·['../namespacegmx.xhtml#a6ec53a17a29b3d233fdfbdc4e273d08d',·1,·'gmx']]],
93 ····['basicoptions_2ecpp_41',·['basicoptions.cpp',·['../basicoptions_8cpp.xhtml',·1,·'']]],93 ····['basicoptions_2ecpp_41',·['basicoptions.cpp',·['../basicoptions_8cpp.xhtml',·1,·'']]],
94 ····['basicoptions_2eh_42',·['basicoptions.h',·['../basicoptions_8h.xhtml',·1,·'']]],94 ····['basicoptions_2eh_42',·['basicoptions.h',·['../basicoptions_8h.xhtml',·1,·'']]],
95 ····['basicoptionstorage_2eh_43',·['basicoptionstorage.h',·['../basicoptionstorage_8h.xhtml',·1,·'']]],95 ····['basicoptionstorage_2eh_43',·['basicoptionstorage.h',·['../basicoptionstorage_8h.xhtml',·1,·'']]],
96 ····['basictest_44',·['basicTest',·['../classgmx_1_1test_1_1TrajectoryFrameWriterTest.xhtml#af60c02f3ca19494613898ebe603da1b0',·1,·'gmx::test::TrajectoryFrameWriterTest']]],96 ····['basictest_44',·['basicTest',·['../classgmx_1_1test_1_1TrajectoryFrameWriterTest.xhtml#af60c02f3ca19494613898ebe603da1b0',·1,·'gmx::test::TrajectoryFrameWriterTest']]],
97 ····['basicvector_45',·['basicvector',·['../classgmx_1_1BasicVector.xhtml#a0770c51feab30c509deb6d9596222fb5',·1,·'gmx::BasicVector::BasicVector()'], 
98 ········['../classgmx_1_1BasicVector.xhtml#a537d03f84068abce7af6b63290f8841e',·1,·'gmx::BasicVector::BasicVector(ValueType·x,·ValueType·y,·ValueType·z)'], 
99 ········['../classgmx_1_1BasicVector.xhtml#a59c820c73b78d45df306861d89a875aa',·1,·'gmx::BasicVector::BasicVector(const·RawArray·x)'],97 ····['basicvector_45',·['basicvector',·['../classgmx_1_1BasicVector.xhtml#a59c820c73b78d45df306861d89a875aa',·1,·'gmx::BasicVector::BasicVector(const·RawArray·x)'],
100 ········['../classgmx_1_1BasicVector.xhtml#a952f7b52f33c8d0fd75deda75cc5293a',·1,·'gmx::BasicVector::BasicVector(const·BasicVector·&amp;src)=default'],98 ········['../classgmx_1_1BasicVector.xhtml#a952f7b52f33c8d0fd75deda75cc5293a',·1,·'gmx::BasicVector::BasicVector(const·BasicVector·&amp;src)=default'],
101 ········['../classgmx_1_1BasicVector.xhtml#a1d3608d65677e2aa992df4a2f209a7da',·1,·'gmx::BasicVector::BasicVector(BasicVector·&amp;&amp;src)·noexcept=default'],99 ········['../classgmx_1_1BasicVector.xhtml#a1d3608d65677e2aa992df4a2f209a7da',·1,·'gmx::BasicVector::BasicVector(BasicVector·&amp;&amp;src)·noexcept=default'],
102 ········['../classgmx_1_1BasicVector.xhtml',·1,·'gmx::BasicVector&lt;·ValueType·&gt;']100 ········['../classgmx_1_1BasicVector.xhtml',·1,·'gmx::BasicVector&lt;·ValueType·&gt;'],
 101 ········['../classgmx_1_1BasicVector.xhtml#a0770c51feab30c509deb6d9596222fb5',·1,·'gmx::BasicVector::BasicVector()'],
 102 ········['../classgmx_1_1BasicVector.xhtml#a537d03f84068abce7af6b63290f8841e',·1,·'gmx::BasicVector::BasicVector(ValueType·x,·ValueType·y,·ValueType·z)']
103 ····]],103 ····]],
104 ····['basicvector_3c_20double_20_3e_46',·['BasicVector&lt;·double·&gt;',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx']]],104 ····['basicvector_3c_20double_20_3e_46',·['BasicVector&lt;·double·&gt;',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx']]],
105 ····['basicvector_3c_20int_20_3e_47',·['BasicVector&lt;·int·&gt;',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx']]],105 ····['basicvector_3c_20int_20_3e_47',·['BasicVector&lt;·int·&gt;',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx']]],
106 ····['basicvector_3c_20real_20_3e_48',·['BasicVector&lt;·real·&gt;',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx']]],106 ····['basicvector_3c_20real_20_3e_48',·['BasicVector&lt;·real·&gt;',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx']]],
107 ····['bauto_49',·['bAuto',·['../structUmbrellaOptions.xhtml#a495f27b8e9cfb0ac6aa0c5a650eb54a6',·1,·'UmbrellaOptions']]],107 ····['bauto_49',·['bAuto',·['../structUmbrellaOptions.xhtml#a495f27b8e9cfb0ac6aa0c5a650eb54a6',·1,·'UmbrellaOptions']]],
108 ····['bb_50',·['bb',·['../structNbnxnPairlistCpuWork_1_1IClusterData.xhtml#a8e4ed09c1eda9ba3122e66f2bd659032',·1,·'NbnxnPairlistCpuWork::IClusterData']]],108 ····['bb_50',·['bb',·['../structNbnxnPairlistCpuWork_1_1IClusterData.xhtml#a8e4ed09c1eda9ba3122e66f2bd659032',·1,·'NbnxnPairlistCpuWork::IClusterData']]],
109 ····['bboolno_51',·['bBoolNo',·['../structgmx__sel__lexer__t.xhtml#a51c1565a9c7e67f715d28109b6a91489',·1,·'gmx_sel_lexer_t']]],109 ····['bboolno_51',·['bBoolNo',·['../structgmx__sel__lexer__t.xhtml#a51c1565a9c7e67f715d28109b6a91489',·1,·'gmx_sel_lexer_t']]],
Offset 123, 45 lines modifiedOffset 123, 45 lines modified
123 ····['bcycl_65',·['bCycl',·['../structUmbrellaOptions.xhtml#a1f8b14c587e7cce219441aac02aa5f66',·1,·'UmbrellaOptions']]],123 ····['bcycl_65',·['bCycl',·['../structUmbrellaOptions.xhtml#a1f8b14c587e7cce219441aac02aa5f66',·1,·'UmbrellaOptions']]],
124 ····['bdataproperty_5f_66',·['bDataProperty_',·['../classgmx_1_1AnalysisDataModuleManager_1_1Impl.xhtml#a12b9fab82a72fdb6d521944c6fab4eab',·1,·'gmx::AnalysisDataModuleManager::Impl']]],124 ····['bdataproperty_5f_66',·['bDataProperty_',·['../classgmx_1_1AnalysisDataModuleManager_1_1Impl.xhtml#a12b9fab82a72fdb6d521944c6fab4eab',·1,·'gmx::AnalysisDataModuleManager::Impl']]],
125 ····['bdebugmode_67',·['bDebugMode',·['../fatalerror_8h.xhtml#aeceaa87707ac5c2c96e224de90dd481c',·1,·'fatalerror.cpp']]],125 ····['bdebugmode_67',·['bDebugMode',·['../fatalerror_8h.xhtml#aeceaa87707ac5c2c96e224de90dd481c',·1,·'fatalerror.cpp']]],
126 ····['bdiscrete_68',·['bDiscrete',·['../structt__matrix.xhtml#a6ca5a8d5f5d4be235502f83ffac2586c',·1,·'t_matrix']]],126 ····['bdiscrete_68',·['bDiscrete',·['../structt__matrix.xhtml#a6ca5a8d5f5d4be235502f83ffac2586c',·1,·'t_matrix']]],
127 ····['bdotime_69',·['bDoTime',·['../structNbnxmGpu.xhtml#a1de4ad8bb7a72156331022911da91fb3',·1,·'NbnxmGpu']]],127 ····['bdotime_69',·['bDoTime',·['../structNbnxmGpu.xhtml#a1de4ad8bb7a72156331022911da91fb3',·1,·'NbnxmGpu']]],
128 ····['bdynamicbox_70',·['bDynamicBox',·['../structnbnxn__atomdata__t.xhtml#ae77b34a2c51cda08b6614469d056d29b',·1,·'nbnxn_atomdata_t']]],128 ····['bdynamicbox_70',·['bDynamicBox',·['../structnbnxn__atomdata__t.xhtml#ae77b34a2c51cda08b6614469d056d29b',·1,·'nbnxn_atomdata_t']]],
129 ····['becool_71',·['beCool',·['../namespacegmx_1_1anonymous__namespace_02coolstuff_8cpp_03.xhtml#a67229d8062fb466b5be7cb8bed125f1a',·1,·'gmx::anonymous_namespace{coolstuff.cpp}']]],129 ····['becool_71',·['beCool',·['../namespacegmx_1_1anonymous__namespace_02coolstuff_8cpp_03.xhtml#a67229d8062fb466b5be7cb8bed125f1a',·1,·'gmx::anonymous_namespace{coolstuff.cpp}']]],
130 ····['begin_72',·['begin',·['../classgmx_1_1FixedCapacityVector.xhtml#a93f0ea6236ab2cc8e924025646f8d87b',·1,·'gmx::FixedCapacityVector::begin()'],130 ····['begin_72',·['begin',·['../classgmx_1_1Range.xhtml#a242b3517477cdd07a73a702f360f5b46',·1,·'gmx::Range::begin()'],
131 ········['../namespacegmx.xhtml#a636719700df07fe8736fa19bb12c29dd',·1,·'gmx::begin(MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],131 ········['../namespacegmx.xhtml#a636719700df07fe8736fa19bb12c29dd',·1,·'gmx::begin(MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],
 132 ········['../namespacegmx.xhtml#aaf0716c8ca857b1a8877fc94463b5850',·1,·'gmx::begin(const·MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],
132 ········['../namespacegmx.xhtml#a9fd99e24e163158545296b3f791b0ee8',·1,·'gmx::begin(const·BasicMdspan·&amp;basicMdspan)'],133 ········['../namespacegmx.xhtml#a9fd99e24e163158545296b3f791b0ee8',·1,·'gmx::begin(const·BasicMdspan·&amp;basicMdspan)'],
133 ········['../classgmx_1_1FixedCapacityVector.xhtml#a453e4185086abe32f76359d79e5df439',·1,·'gmx::FixedCapacityVector::begin()'],134 ········['../classgmx_1_1FixedCapacityVector.xhtml#a453e4185086abe32f76359d79e5df439',·1,·'gmx::FixedCapacityVector::begin()'],
134 ········['../namespacegmx.xhtml#aaf0716c8ca857b1a8877fc94463b5850',·1,·'gmx::begin()'], 
135 ········['../classgmx_1_1Range.xhtml#a242b3517477cdd07a73a702f360f5b46',·1,·'gmx::Range::begin()'], 
136 ········['../structgmx_1_1EnumerationArray.xhtml#a4a2f5be2695dfa8cbac551742c15d771',·1,·'gmx::EnumerationArray::begin()'], 
137 ········['../classgmx_1_1EnumerationWrapper.xhtml#abf496f9dcaab55be1b9cbe93f05312d9',·1,·'gmx::EnumerationWrapper::begin()'],135 ········['../classgmx_1_1EnumerationWrapper.xhtml#abf496f9dcaab55be1b9cbe93f05312d9',·1,·'gmx::EnumerationWrapper::begin()'],
 136 ········['../classgmx_1_1ArrayRef.xhtml#a52348f625a07e17a873cf943882510f9',·1,·'gmx::ArrayRef::begin()'],
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138 ········['../classgmx_1_1EnergyTerm.xhtml#a4b930e14cacc91c16a0c6e59fb48ea58',·1,·'gmx::EnergyTerm::begin()'],138 ········['../classgmx_1_1EnergyTerm.xhtml#a4b930e14cacc91c16a0c6e59fb48ea58',·1,·'gmx::EnergyTerm::begin()'],
139 ········['../classgmx_1_1IntegerBox.xhtml#a4bdda1928d7845c8e5c5c3ef2918a466',·1,·'gmx::IntegerBox::begin()'],139 ········['../classgmx_1_1IntegerBox.xhtml#a4bdda1928d7845c8e5c5c3ef2918a466',·1,·'gmx::IntegerBox::begin()'],
140 ········['../classgmx_1_1internal_1_1SimdArrayRef.xhtml#ab4801001dba830e69c9984d97e9c4932',·1,·'gmx::internal::SimdArrayRef::begin()'],140 ········['../classgmx_1_1internal_1_1SimdArrayRef.xhtml#ab4801001dba830e69c9984d97e9c4932',·1,·'gmx::internal::SimdArrayRef::begin()'],
141 ········['../classAtomRange.xhtml#afc17642be8cc592f6f47fdd9d86aa408',·1,·'AtomRange::begin()'],141 ········['../classAtomRange.xhtml#afc17642be8cc592f6f47fdd9d86aa408',·1,·'AtomRange::begin()'],
142 ········['../classIListRange.xhtml#a7526befe10a07f17dbc35e704d01aeea',·1,·'IListRange::begin()'],142 ········['../classIListRange.xhtml#a7526befe10a07f17dbc35e704d01aeea',·1,·'IListRange::begin()'],
143 ········['../classgmx_1_1EnergyFrame.xhtml#a8c6171058dd1a26721f4af8df12b7a10',·1,·'gmx::EnergyFrame::begin()'],143 ········['../classgmx_1_1EnergyFrame.xhtml#a8c6171058dd1a26721f4af8df12b7a10',·1,·'gmx::EnergyFrame::begin()'],
144 ········['../classgmx_1_1ArrayRef.xhtml#a52348f625a07e17a873cf943882510f9',·1,·'gmx::ArrayRef::begin()']144 ········['../classgmx_1_1FixedCapacityVector.xhtml#a93f0ea6236ab2cc8e924025646f8d87b',·1,·'gmx::FixedCapacityVector::begin()']
145 ····]],145 ····]],
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147 ····['beginiterator_74',·['beginIterator',·['../classgmx_1_1SelectionParserSymbolTable.xhtml#a6301d2be458f368de68f404d9dff17f7',·1,·'gmx::SelectionParserSymbolTable']]],147 ····['beginiterator_74',·['beginIterator',·['../classgmx_1_1SelectionParserSymbolTable.xhtml#a6301d2be458f368de68f404d9dff17f7',·1,·'gmx::SelectionParserSymbolTable']]],
148 ····['behaviorcollection_2ecpp_75',·['behaviorcollection.cpp',·['../behaviorcollection_8cpp.xhtml',·1,·'']]],148 ····['behaviorcollection_2ecpp_75',·['behaviorcollection.cpp',·['../behaviorcollection_8cpp.xhtml',·1,·'']]],
149 ····['behaviorcollection_2eh_76',·['behaviorcollection.h',·['../behaviorcollection_8h.xhtml',·1,·'']]],149 ····['behaviorcollection_2eh_76',·['behaviorcollection.h',·['../behaviorcollection_8h.xhtml',·1,·'']]],
150 ····['bench_77',·['bench',·['../namespaceNbnxm.xhtml#a94b5fe0aba252ce26a4cb2763c268980',·1,·'Nbnxm']]],150 ····['bench_77',·['bench',·['../namespaceNbnxm.xhtml#a94b5fe0aba252ce26a4cb2763c268980',·1,·'Nbnxm']]],
151 ····['bench_5fcoords_2eh_78',·['bench_coords.h',·['../bench__coords_8h.xhtml',·1,·'']]],151 ····['bench_5fcoords_2eh_78',·['bench_coords.h',·['../bench__coords_8h.xhtml',·1,·'']]],
152 ····['bench_5fsetup_2ecpp_79',·['bench_setup.cpp',·['../bench__setup_8cpp.xhtml',·1,·'']]],152 ····['bench_5fsetup_2ecpp_79',·['bench_setup.cpp',·['../bench__setup_8cpp.xhtml',·1,·'']]],
153 ····['bench_5fsetup_2eh_80',·['bench_setup.h',·['../bench__setup_8h.xhtml',·1,·'']]],153 ····['bench_5fsetup_2eh_80',·['bench_setup.h',·['../bench__setup_8h.xhtml',·1,·'']]],
154 ····['bench_5fsystem_2ecpp_81',·['bench_system.cpp',·['../bench__system_8cpp.xhtml',·1,·'']]],154 ····['bench_5fsystem_2ecpp_81',·['bench_system.cpp',·['../bench__system_8cpp.xhtml',·1,·'']]],
155 ····['bench_5fsystem_2eh_82',·['bench_system.h',·['../bench__system_8h.xhtml',·1,·'']]],155 ····['bench_5fsystem_2eh_82',·['bench_system.h',·['../bench__system_8h.xhtml',·1,·'']]],
156 ····['benchmarkcombrule_83',·['BenchMarkCombRule',·['../namespaceNbnxm.xhtml#a2b0931ea4b2302d010810175754f8981',·1,·'Nbnxm']]],156 ····['benchmarkcombrule_83',·['BenchMarkCombRule',·['../namespaceNbnxm.xhtml#a2b0931ea4b2302d010810175754f8981',·1,·'Nbnxm']]],
157 ····['benchmarkcoulomb_84',·['BenchMarkCoulomb',·['../namespaceNbnxm.xhtml#a30c80bf36a688c1633e86eb7e607792f',·1,·'Nbnxm']]],157 ····['benchmarkcoulomb_84',·['BenchMarkCoulomb',·['../namespaceNbnxm.xhtml#a30c80bf36a688c1633e86eb7e607792f',·1,·'Nbnxm']]],
158 ····['benchmarkkernels_85',·['BenchMarkKernels',·['../namespaceNbnxm.xhtml#a6cd9801a8e78c975ed0ebe45c63b7715',·1,·'Nbnxm']]],158 ····['benchmarkkernels_85',·['BenchMarkKernels',·['../namespaceNbnxm.xhtml#a6cd9801a8e78c975ed0ebe45c63b7715',·1,·'Nbnxm']]],
159 ····['benchmarksystem_86',·['benchmarksystem',·['../structgmx_1_1BenchmarkSystem.xhtml',·1,·'gmx::BenchmarkSystem'], 
160 ········['../structgmx_1_1BenchmarkSystem.xhtml#a75dfe958cd7d70bdb5e90f2ec642a77b',·1,·'gmx::BenchmarkSystem::BenchmarkSystem()']159 ····['benchmarksystem_86',·['benchmarksystem',·['../structgmx_1_1BenchmarkSystem.xhtml#a75dfe958cd7d70bdb5e90f2ec642a77b',·1,·'gmx::BenchmarkSystem::BenchmarkSystem()'],
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161 ····]],161 ····]],
162 ····['bend_87',·['Bend',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03.xhtml#a8ec2371446161e824ba0e6fb1edbba0cadcef3e264a0eecc2a9eadd4478c67a1f',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}']]],162 ····['bend_87',·['Bend',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03.xhtml#a8ec2371446161e824ba0e6fb1edbba0cadcef3e264a0eecc2a9eadd4478c67a1f',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}']]],
163 ····['bequil_88',·['bEquil',·['../structdf__history__t.xhtml#a2800c69caa7fcce2c14cb537c4909bc3',·1,·'df_history_t']]],163 ····['bequil_88',·['bEquil',·['../structdf__history__t.xhtml#a2800c69caa7fcce2c14cb537c4909bc3',·1,·'df_history_t']]],
164 ····['berendsentemperaturecoupling_89',·['BerendsenTemperatureCoupling',·['../classgmx_1_1BerendsenTemperatureCoupling.xhtml',·1,·'gmx']]],164 ····['berendsentemperaturecoupling_89',·['BerendsenTemperatureCoupling',·['../classgmx_1_1BerendsenTemperatureCoupling.xhtml',·1,·'gmx']]],
165 ····['bestvertex_90',·['bestVertex',·['../classgmx_1_1NelderMeadSimplex.xhtml#a766a1b22213cf4e5a7a10ee4130afd6f',·1,·'gmx::NelderMeadSimplex']]],165 ····['bestvertex_90',·['bestVertex',·['../classgmx_1_1NelderMeadSimplex.xhtml#a766a1b22213cf4e5a7a10ee4130afd6f',·1,·'gmx::NelderMeadSimplex']]],
166 ····['beta_91',·['beta',·['../structgmx_1_1DimParams_1_1FepDimParams.xhtml#ad3aa1edaec7f13643c5038ccc2a01a78',·1,·'gmx::DimParams::FepDimParams::beta'],166 ····['beta_91',·['beta',·['../structgmx_1_1DimParams_1_1FepDimParams.xhtml#ad3aa1edaec7f13643c5038ccc2a01a78',·1,·'gmx::DimParams::FepDimParams::beta'],
167 ········['../structgmx_1_1test_1_1AwhTestParameters.xhtml#a3f4c1a9b2610aa00392d66d2c4b183ea',·1,·'gmx::test::AwhTestParameters::beta']167 ········['../structgmx_1_1test_1_1AwhTestParameters.xhtml#a3f4c1a9b2610aa00392d66d2c4b183ea',·1,·'gmx::test::AwhTestParameters::beta']
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180 ····['bgeneratehh14interactions_103',·['bGenerateHH14Interactions',·['../structPreprocessResidue.xhtml#a7ef40e3704969bcd360c3d5d94ee264b',·1,·'PreprocessResidue']]],180 ····['bgeneratehh14interactions_103',·['bGenerateHH14Interactions',·['../structPreprocessResidue.xhtml#a7ef40e3704969bcd360c3d5d94ee264b',·1,·'PreprocessResidue']]],
181 ····['bgroups_104',·['bGroups',·['../structgmx__sel__lexer__t.xhtml#a5bf6b14ef14775f440cd6a150acf22b0',·1,·'gmx_sel_lexer_t']]],181 ····['bgroups_104',·['bGroups',·['../structgmx__sel__lexer__t.xhtml#a5bf6b14ef14775f440cd6a150acf22b0',·1,·'gmx_sel_lexer_t']]],
182 ····['bharmonic_105',·['bHarmonic',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#ad3c168d4052e3bc5a77dea8ff3a877fe',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],182 ····['bharmonic_105',·['bHarmonic',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#ad3c168d4052e3bc5a77dea8ff3a877fe',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],
183 ····['bhelix_106',·['bHelix',·['../structt__bb.xhtml#a48c50f40d59ad266202feb100567d843',·1,·'t_bb']]],183 ····['bhelix_106',·['bHelix',·['../structt__bb.xhtml#a48c50f40d59ad266202feb100567d843',·1,·'t_bb']]],
184 ····['bhidden_5f_107',·['bHidden_',·['../classgmx_1_1CommandLineHelpContext_1_1Impl.xhtml#a1a012091fc0390f509fcc3c55bd97092',·1,·'gmx::CommandLineHelpContext::Impl']]],184 ····['bhidden_5f_107',·['bHidden_',·['../classgmx_1_1CommandLineHelpContext_1_1Impl.xhtml#a1a012091fc0390f509fcc3c55bd97092',·1,·'gmx::CommandLineHelpContext::Impl']]],
185 ····['bhistonly_108',·['bHistOnly',·['../structUmbrellaOptions.xhtml#acdf67a7adadf17543b0433c028aa387a',·1,·'UmbrellaOptions']]],185 ····['bhistonly_108',·['bHistOnly',·['../structUmbrellaOptions.xhtml#acdf67a7adadf17543b0433c028aa387a',·1,·'UmbrellaOptions']]],
186 ····['bhost_5funused_109',·['bhost_UNUSED',·['../structCheckpointHeaderContents.xhtml#aef8c2b80e340df183cde5c1946fc64e5',·1,·'CheckpointHeaderContents']]],186 ····['bhost_5funused_109',·['bhost_UNUSED',·['../structCheckpointHeaderContents.xhtml#aef8c2b80e340df183cde5c1946fc64e5',·1,·'CheckpointHeaderContents']]],
 187 ····['bias_110',·['bias',·['../classgmx_1_1Bias.xhtml',·1,·'gmx::Bias'],
187 ····['bias_110',·['bias',·['../namespacegmx.xhtml#aed0429233bc357e419dafee7b8bd1344a4ad6b9e6418fd2d739906bd47e887ae3',·1,·'gmx::Bias'],188 ········['../namespacegmx.xhtml#aed0429233bc357e419dafee7b8bd1344a4ad6b9e6418fd2d739906bd47e887ae3',·1,·'gmx::Bias'],
188 ········['../classgmx_1_1PointState.xhtml#a051fc887a154fd8e8429f772006ff597',·1,·'gmx::PointState::bias()'],189 ········['../classgmx_1_1PointState.xhtml#a051fc887a154fd8e8429f772006ff597',·1,·'gmx::PointState::bias()'],
189 ········['../classgmx_1_1Bias.xhtml#a6ea05d388c5983d92b1e4f9216ec3c07',·1,·'gmx::Bias::Bias()'],190 ········['../classgmx_1_1Bias.xhtml#a6ea05d388c5983d92b1e4f9216ec3c07',·1,·'gmx::Bias::Bias()']
190 ········['../classgmx_1_1Bias.xhtml',·1,·'gmx::Bias'] 
191 ····]],191 ····]],
192 ····['bias_2ecpp_111',·['bias.cpp',·['../bias_8cpp.xhtml',·1,·'']]],192 ····['bias_2ecpp_111',·['bias.cpp',·['../bias_8cpp.xhtml',·1,·'']]],
193 ····['bias_2eh_112',·['bias.h',·['../bias_8h.xhtml',·1,·'']]],193 ····['bias_2eh_112',·['bias.h',·['../bias_8h.xhtml',·1,·'']]],
194 ····['bias_5f_113',·['bias_',·['../structgmx_1_1BiasCoupledToSystem.xhtml#a915eb82b66d861dd5377036383b654f0',·1,·'gmx::BiasCoupledToSystem::bias_'],194 ····['bias_5f_113',·['bias_',·['../structgmx_1_1BiasCoupledToSystem.xhtml#a915eb82b66d861dd5377036383b654f0',·1,·'gmx::BiasCoupledToSystem::bias_'],
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195 ········['../classgmx_1_1test_1_1BiasFepLambdaStateTest.xhtml#ae7e39eda7a77d998b80c658f65fb9074',·1,·'gmx::test::BiasFepLambdaStateTest::bias_'],196 ········['../classgmx_1_1test_1_1BiasFepLambdaStateTest.xhtml#ae7e39eda7a77d998b80c658f65fb9074',·1,·'gmx::test::BiasFepLambdaStateTest::bias_']
196 ········['../classgmx_1_1test_1_1BiasTest.xhtml#af4806c866b09dce06db386eb0dcea407',·1,·'gmx::test::BiasTest::bias_'] 
197 ····]],197 ····]],
198 ····['biascorrectedaverage_114',·['biasCorrectedAverage',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a83f79db8f50129497cc5349b972ecabb',·1,·'gmx::ExponentialMovingAverage']]],198 ····['biascorrectedaverage_114',·['biasCorrectedAverage',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a83f79db8f50129497cc5349b972ecabb',·1,·'gmx::ExponentialMovingAverage']]],
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144 ····['c_5fnbnxngpurollinglistpruninginterval_112',·['c_nbnxnGpuRollingListPruningInterval',·['../pairlist__tuning_8cpp.xhtml#a34b35efd3187a63732fc903620d3d0c9',·1,·'pairlist_tuning.cpp']]],144 ····['c_5fnbnxngpurollinglistpruninginterval_112',·['c_nbnxnGpuRollingListPruningInterval',·['../pairlist__tuning_8cpp.xhtml#a34b35efd3187a63732fc903620d3d0c9',·1,·'pairlist_tuning.cpp']]],
145 ····['c_5fnbnxnlistsizefactorcpu_113',·['c_nbnxnListSizeFactorCpu',·['../pairlist__tuning_8cpp.xhtml#a3fcbb19cb6689beec04d844cc6c2feb8',·1,·'pairlist_tuning.cpp']]],145 ····['c_5fnbnxnlistsizefactorcpu_113',·['c_nbnxnListSizeFactorCpu',·['../pairlist__tuning_8cpp.xhtml#a3fcbb19cb6689beec04d844cc6c2feb8',·1,·'pairlist_tuning.cpp']]],
146 ····['c_5fnbnxnlistsizefactorgpu_114',·['c_nbnxnListSizeFactorGPU',·['../pairlist__tuning_8cpp.xhtml#a327a8f12f5167b1f5fedbdcf60410b8a',·1,·'pairlist_tuning.cpp']]],146 ····['c_5fnbnxnlistsizefactorgpu_114',·['c_nbnxnListSizeFactorGPU',·['../pairlist__tuning_8cpp.xhtml#a327a8f12f5167b1f5fedbdcf60410b8a',·1,·'pairlist_tuning.cpp']]],
147 ····['c_5fnbnxnlistsizefactorintelxeonphi_115',·['c_nbnxnListSizeFactorIntelXeonPhi',·['../pairlist__tuning_8cpp.xhtml#aae87045b170c054f573dcc97066eeecd',·1,·'pairlist_tuning.cpp']]],147 ····['c_5fnbnxnlistsizefactorintelxeonphi_115',·['c_nbnxnListSizeFactorIntelXeonPhi',·['../pairlist__tuning_8cpp.xhtml#aae87045b170c054f573dcc97066eeecd',·1,·'pairlist_tuning.cpp']]],
148 ····['c_5fnbnxnlistsizefactormargin_116',·['c_nbnxnListSizeFactorMargin',·['../pairlist__tuning_8cpp.xhtml#a21bf1f047a789ad132b04ba504dd08bf',·1,·'pairlist_tuning.cpp']]],148 ····['c_5fnbnxnlistsizefactormargin_116',·['c_nbnxnListSizeFactorMargin',·['../pairlist__tuning_8cpp.xhtml#a21bf1f047a789ad132b04ba504dd08bf',·1,·'pairlist_tuning.cpp']]],
149 ····['c_5fnmtomrcunits_117',·['c_nmToMrcUnits',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a084c836f7f75cc97b5c92d3fa400dc70',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],149 ····['c_5fnmtomrcunits_117',·['c_nmToMrcUnits',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a084c836f7f75cc97b5c92d3fa400dc70',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
150 ····['c_5fnormalizationnames_118',·['c_normalizationNames',·['../group__module__trajectoryanalysis.xhtml#gafe9e3ae6c83f2aeb21e0ad8841e3b0e2',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}']]],150 ····['c_5fnormalizationnames_118',·['c_normalizationNames',·['../group__module__trajectoryanalysis.xhtml#gafe9e3ae6c83f2aeb21e0ad8841e3b0e2',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}']]],
151 ····['c_5fnumatoms_119',·['c_numatoms',·['../namespacegmx_1_1anonymous__namespace_02wholemoleculetransform_8cpp_03.xhtml#aefe3a2139c12a370bfa601c498f7c317',·1,·'gmx::anonymous_namespace{wholemoleculetransform.cpp}::c_numAtoms'],151 ····['c_5fnumatoms_119',·['c_numatoms',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pairs_8cpp_03.xhtml#ab0d16511710d3d446c4ebe139a1a93d8',·1,·'gmx::test::anonymous_namespace{pairs.cpp}::c_numAtoms'],
152 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02nb__free__energy_8cpp_03.xhtml#a9e6451d690e56d5db0395022cefa888c',·1,·'gmx::test::anonymous_namespace{nb_free_energy.cpp}::c_numAtoms'],152 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02nb__free__energy_8cpp_03.xhtml#a9e6451d690e56d5db0395022cefa888c',·1,·'gmx::test::anonymous_namespace{nb_free_energy.cpp}::c_numAtoms'],
153 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a60f4b0f65ad59fda745897b8764dae0a',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::c_numAtoms'],153 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a60f4b0f65ad59fda745897b8764dae0a',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::c_numAtoms'],
154 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02pairs_8cpp_03.xhtml#ab0d16511710d3d446c4ebe139a1a93d8',·1,·'gmx::test::anonymous_namespace{pairs.cpp}::c_numAtoms']154 ········['../namespacegmx_1_1anonymous__namespace_02wholemoleculetransform_8cpp_03.xhtml#aefe3a2139c12a370bfa601c498f7c317',·1,·'gmx::anonymous_namespace{wholemoleculetransform.cpp}::c_numAtoms']
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157 ····['c_5fnumboundingboxbounds1d_121',·['c_numBoundingBoxBounds1D',·['../namespaceNbnxm.xhtml#a1eba0f67a1d9680949c080c762e879a5',·1,·'Nbnxm']]],157 ····['c_5fnumboundingboxbounds1d_121',·['c_numBoundingBoxBounds1D',·['../namespaceNbnxm.xhtml#a1eba0f67a1d9680949c080c762e879a5',·1,·'Nbnxm']]],
158 ····['c_5fnumcorrelationblocks_122',·['c_numCorrelationBlocks',·['../classgmx_1_1CorrelationTensor.xhtml#a3bacb906f9931328bddd22c8e218c9d4',·1,·'gmx::CorrelationTensor']]],158 ····['c_5fnumcorrelationblocks_122',·['c_numCorrelationBlocks',·['../classgmx_1_1CorrelationTensor.xhtml#a3bacb906f9931328bddd22c8e218c9d4',·1,·'gmx::CorrelationTensor']]],
159 ····['c_5fnumeigenrealsperexperiment_123',·['c_numEigenRealsPerExperiment',·['../structt__oriresdata.xhtml#a19c8ceb03fed76dc54909c852ea83321',·1,·'t_oriresdata']]],159 ····['c_5fnumeigenrealsperexperiment_123',·['c_numEigenRealsPerExperiment',·['../structt__oriresdata.xhtml#a19c8ceb03fed76dc54909c852ea83321',·1,·'t_oriresdata']]],
160 ····['c_5fnumelectypes_124',·['c_numElecTypes',·['../namespaceNbnxm.xhtml#a6db90ea2cf677b2766d056d777a07088',·1,·'Nbnxm']]],160 ····['c_5fnumelectypes_124',·['c_numElecTypes',·['../namespaceNbnxm.xhtml#a6db90ea2cf677b2766d056d777a07088',·1,·'Nbnxm']]],
161 ····['c_5fnumfirsttuningintervalskip_125',·['c_numFirstTuningIntervalSkip',·['../pme__load__balancing_8cpp.xhtml#a358540e661dc9efd36da10c2989d397a',·1,·'pme_load_balancing.cpp']]],161 ····['c_5fnumfirsttuningintervalskip_125',·['c_numFirstTuningIntervalSkip',·['../pme__load__balancing_8cpp.xhtml#a358540e661dc9efd36da10c2989d397a',·1,·'pme_load_balancing.cpp']]],
Offset 165, 16 lines modifiedOffset 165, 16 lines modified
165 ····['c_5fnumpostswitchtuningintervalskip_129',·['c_numPostSwitchTuningIntervalSkip',·['../pme__load__balancing_8cpp.xhtml#a6bd07f15551b49e8775cdaba44a1d7de',·1,·'pme_load_balancing.cpp']]],165 ····['c_5fnumpostswitchtuningintervalskip_129',·['c_numPostSwitchTuningIntervalSkip',·['../pme__load__balancing_8cpp.xhtml#a6bd07f15551b49e8775cdaba44a1d7de',·1,·'pme_load_balancing.cpp']]],
166 ····['c_5fnumvdwtypes_130',·['c_numVdwTypes',·['../namespaceNbnxm.xhtml#a06589b55845ca1245b0e50cac7ad86c9',·1,·'Nbnxm']]],166 ····['c_5fnumvdwtypes_130',·['c_numVdwTypes',·['../namespaceNbnxm.xhtml#a06589b55845ca1245b0e50cac7ad86c9',·1,·'Nbnxm']]],
167 ····['c_5foldestsupportedmagicnumber_131',·['c_oldestSupportedMagicNumber',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#afb8f8255516cbf4c08e51ee7cface65b',·1,·'anonymous_namespace{edsam.cpp}']]],167 ····['c_5foldestsupportedmagicnumber_131',·['c_oldestSupportedMagicNumber',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#afb8f8255516cbf4c08e51ee7cface65b',·1,·'anonymous_namespace{edsam.cpp}']]],
168 ····['c_5foldestunsupportedmagicnumber_132',·['c_oldestUnsupportedMagicNumber',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#a3d1dc11b4252282579382b89abd9d815',·1,·'anonymous_namespace{edsam.cpp}']]],168 ····['c_5foldestunsupportedmagicnumber_132',·['c_oldestUnsupportedMagicNumber',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#a3d1dc11b4252282579382b89abd9d815',·1,·'anonymous_namespace{edsam.cpp}']]],
169 ····['c_5foptions_133',·['c_options',·['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#a1555a48dc2e0847fe505724fda04fc66',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],169 ····['c_5foptions_133',·['c_options',·['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#a1555a48dc2e0847fe505724fda04fc66',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],
170 ····['c_5fpackx4_134',·['c_packX4',·['../atomdata_8h.xhtml#a5edaa1830e4412dd0d817e50585589a7',·1,·'atomdata.h']]],170 ····['c_5fpackx4_134',·['c_packX4',·['../atomdata_8h.xhtml#a5edaa1830e4412dd0d817e50585589a7',·1,·'atomdata.h']]],
171 ····['c_5fpackx8_135',·['c_packX8',·['../atomdata_8h.xhtml#a5b81bb507cc1c9ef5b09fb99ee45eff0',·1,·'atomdata.h']]],171 ····['c_5fpackx8_135',·['c_packX8',·['../atomdata_8h.xhtml#a5b81bb507cc1c9ef5b09fb99ee45eff0',·1,·'atomdata.h']]],
172 ····['c_5fpbcfortests_136',·['c_pbcfortests',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pairs_8cpp_03.xhtml#a4e60b5e4d9d4e96d420da062cdd7136f',·1,·'gmx::test::anonymous_namespace{pairs.cpp}::c_pbcForTests'], 
173 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02position__restraints_8cpp_03.xhtml#a3f98f7220875de5238f25cb8ef1a380e',·1,·'gmx::test::anonymous_namespace{position_restraints.cpp}::c_pbcForTests'],172 ····['c_5fpbcfortests_136',·['c_pbcfortests',·['../namespacegmx_1_1test_1_1anonymous__namespace_02position__restraints_8cpp_03.xhtml#a3f98f7220875de5238f25cb8ef1a380e',·1,·'gmx::test::anonymous_namespace{position_restraints.cpp}::c_pbcForTests'],
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174 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a8716925dfcab1e34ee190aa91b188f0a',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::c_pbcForTests']174 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a8716925dfcab1e34ee190aa91b188f0a',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::c_pbcForTests']
175 ····]],175 ····]],
176 ····['c_5fpbctypenames_137',·['c_pbcTypeNames',·['../pbc_8cpp.xhtml#a7be910db7d0fa30ca5568f9cbc332ee9',·1,·'pbc.cpp']]],176 ····['c_5fpbctypenames_137',·['c_pbcTypeNames',·['../pbc_8cpp.xhtml#a7be910db7d0fa30ca5568f9cbc332ee9',·1,·'pbc.cpp']]],
177 ····['c_5fpdbatomstypenames_138',·['c_pdbAtomsTypeNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02select_8cpp_03.xhtml#a04755ce557be547fa02a3bd3486e70f5',·1,·'gmx::analysismodules::anonymous_namespace{select.cpp}']]],177 ····['c_5fpdbatomstypenames_138',·['c_pdbAtomsTypeNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02select_8cpp_03.xhtml#a04755ce557be547fa02a3bd3486e70f5',·1,·'gmx::analysismodules::anonymous_namespace{select.cpp}']]],
178 ····['c_5fpmeatomdatablocksize_139',·['c_pmeAtomDataBlockSize',·['../pme__gpu__internal_8cpp.xhtml#a9751dab48d98743b36ad4d6eee89aab6',·1,·'pme_gpu_internal.cpp']]],178 ····['c_5fpmeatomdatablocksize_139',·['c_pmeAtomDataBlockSize',·['../pme__gpu__internal_8cpp.xhtml#a9751dab48d98743b36ad4d6eee89aab6',·1,·'pme_gpu_internal.cpp']]],
179 ····['c_5fpmegpuorder_140',·['c_pmeGpuOrder',·['../pme__gpu__constants_8h.xhtml#a8027cdc3ec057297fa567378562d892e',·1,·'pme_gpu_constants.h']]],179 ····['c_5fpmegpuorder_140',·['c_pmeGpuOrder',·['../pme__gpu__constants_8h.xhtml#a8027cdc3ec057297fa567378562d892e',·1,·'pme_gpu_constants.h']]],
180 ····['c_5fppstretchesnames_141',·['c_PPStretchesNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03.xhtml#acd7005765b5321aa2e84a1efa94e4804',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}']]],180 ····['c_5fppstretchesnames_141',·['c_PPStretchesNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03.xhtml#acd7005765b5321aa2e84a1efa94e4804',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}']]],
Offset 187, 16 lines modifiedOffset 187, 16 lines modified
187 ····['c_5fpullgroupsmallgroupthreshold_148',·['c_pullGroupSmallGroupThreshold',·['../pull_8h.xhtml#ae5981861a54303677a7841cb8146ad1b',·1,·'pull.h']]],187 ····['c_5fpullgroupsmallgroupthreshold_148',·['c_pullGroupSmallGroupThreshold',·['../pull_8h.xhtml#ae5981861a54303677a7841cb8146ad1b',·1,·'pull.h']]],
188 ····['c_5fpullmaxnumlocalatomssinglethreaded_149',·['c_pullMaxNumLocalAtomsSingleThreaded',·['../pull__internal_8h.xhtml#ad00c367c39da602d9a06dae3e78e3906',·1,·'pull_internal.h']]],188 ····['c_5fpullmaxnumlocalatomssinglethreaded_149',·['c_pullMaxNumLocalAtomsSingleThreaded',·['../pull__internal_8h.xhtml#ad00c367c39da602d9a06dae3e78e3906',·1,·'pull_internal.h']]],
189 ····['c_5fqmmmcp2kmodulename_150',·['c_qmmmCP2KModuleName',·['../namespacegmx.xhtml#a2dc5d75b30933ef685d2af785d491f84',·1,·'gmx']]],189 ····['c_5fqmmmcp2kmodulename_150',·['c_qmmmCP2KModuleName',·['../namespacegmx.xhtml#a2dc5d75b30933ef685d2af785d491f84',·1,·'gmx']]],
190 ····['c_5fqmmmqmmethodnames_151',·['c_qmmmQMMethodNames',·['../namespacegmx.xhtml#afc6d6c1e63e76316db42e69f486d058f',·1,·'gmx']]],190 ····['c_5fqmmmqmmethodnames_151',·['c_qmmmQMMethodNames',·['../namespacegmx.xhtml#afc6d6c1e63e76316db42e69f486d058f',·1,·'gmx']]],
191 ····['c_5frefcoordscalingfortests_152',·['c_refCoordScalingForTests',·['../namespacegmx_1_1test_1_1anonymous__namespace_02position__restraints_8cpp_03.xhtml#a3420204ff48374d1304ea0440d3fb0b9',·1,·'gmx::test::anonymous_namespace{position_restraints.cpp}']]],191 ····['c_5frefcoordscalingfortests_152',·['c_refCoordScalingForTests',·['../namespacegmx_1_1test_1_1anonymous__namespace_02position__restraints_8cpp_03.xhtml#a3420204ff48374d1304ea0440d3fb0b9',·1,·'gmx::test::anonymous_namespace{position_restraints.cpp}']]],
192 ····['c_5fregexstringstoskip_153',·['c_regexStringsToSkip',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pdb2gmx_8cpp_03.xhtml#ae31eabd72e6bdd29eb10117291c65c32',·1,·'gmx::test::anonymous_namespace{pdb2gmx.cpp}']]],192 ····['c_5fregexstringstoskip_153',·['c_regexStringsToSkip',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pdb2gmx_8cpp_03.xhtml#ae31eabd72e6bdd29eb10117291c65c32',·1,·'gmx::test::anonymous_namespace{pdb2gmx.cpp}']]],
193 ····['c_5fresiduenumberingtypenames_154',·['c_residueNumberingTypeNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02select_8cpp_03.xhtml#aacce3e6b8a3d818ebca234f667803dd9',·1,·'gmx::analysismodules::anonymous_namespace{select.cpp}']]],193 ····['c_5fresiduenumberingtypenames_154',·['c_residueNumberingTypeNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02select_8cpp_03.xhtml#aacce3e6b8a3d818ebca234f667803dd9',·1,·'gmx::analysismodules::anonymous_namespace{select.cpp}']]],
194 ····['c_5frf_155',·['c_rf',·['../structNBParamGpu.xhtml#a7b6221b3de733d7daff18614942d2146',·1,·'NBParamGpu::c_rf'], 
195 ········['../structcl__nbparam__params.xhtml#a821ce0f76686cc34547adfb4cd62bb81',·1,·'cl_nbparam_params::c_rf']194 ····['c_5frf_155',·['c_rf',·['../structcl__nbparam__params.xhtml#a821ce0f76686cc34547adfb4cd62bb81',·1,·'cl_nbparam_params::c_rf'],
 195 ········['../structNBParamGpu.xhtml#a7b6221b3de733d7daff18614942d2146',·1,·'NBParamGpu::c_rf']
196 ····]],196 ····]],
197 ····['c_5frocffterrorstrings_156',·['c_rocfftErrorStrings',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03.xhtml#a760553c2167f04e28ac17eef73595bc9',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]],197 ····['c_5frocffterrorstrings_156',·['c_rocfftErrorStrings',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03.xhtml#a760553c2167f04e28ac17eef73595bc9',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]],
198 ····['c_5frootnodename_157',·['c_RootNodeName',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#af8fced14cf0f669ed507c1d04af58fe2',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],198 ····['c_5frootnodename_157',·['c_RootNodeName',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#af8fced14cf0f669ed507c1d04af58fe2',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],
199 ····['c_5fsampleforcesfull_158',·['c_sampleForcesFull',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmegathertest_8cpp_03.xhtml#a096c0d45afd6872145063fb37bfca485',·1,·'gmx::test::anonymous_namespace{pmegathertest.cpp}']]],199 ····['c_5fsampleforcesfull_158',·['c_sampleForcesFull',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmegathertest_8cpp_03.xhtml#a096c0d45afd6872145063fb37bfca485',·1,·'gmx::test::anonymous_namespace{pmegathertest.cpp}']]],
200 ····['c_5fscihistogramsize_159',·['c_sciHistogramSize',·['../gpu__types__common_8h.xhtml#a092d8a8e21b474d0d27776b4686d068b',·1,·'gpu_types_common.h']]],200 ····['c_5fscihistogramsize_159',·['c_sciHistogramSize',·['../gpu__types__common_8h.xhtml#a092d8a8e21b474d0d27776b4686d068b',·1,·'gpu_types_common.h']]],
201 ····['c_5fscisortingthreadsperblock_160',·['c_sciSortingThreadsPerBlock',·['../gpu__types__common_8h.xhtml#a0a2c3f6f909bbaf08311886deb9123d4',·1,·'gpu_types_common.h']]],201 ····['c_5fscisortingthreadsperblock_160',·['c_sciSortingThreadsPerBlock',·['../gpu__types__common_8h.xhtml#a0a2c3f6f909bbaf08311886deb9123d4',·1,·'gpu_types_common.h']]],
202 ····['c_5fscopecutoff_161',·['c_scopeCutoff',·['../classgmx_1_1BiasGrid.xhtml#a2b80702808a1424d0200d74d20eec40d',·1,·'gmx::BiasGrid']]],202 ····['c_5fscopecutoff_161',·['c_scopeCutoff',·['../classgmx_1_1BiasGrid.xhtml#a2b80702808a1424d0200d74d20eec40d',·1,·'gmx::BiasGrid']]],
Offset 868, 21 lines modifiedOffset 868, 21 lines modified
868 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml#a06da6c303c493beb97fc95f5d6265801',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy::clone()'],868 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml#a06da6c303c493beb97fc95f5d6265801',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy::clone()'],
869 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml#a19b0f24b941e857b7d8bba44fdf880db',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation::clone()'],869 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml#a19b0f24b941e857b7d8bba44fdf880db',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation::clone()'],
870 ········['../classgmx_1_1AbstractAverageHistogram.xhtml#ae41c64629aa1fdbc6aa79f6e2c842c7f',·1,·'gmx::AbstractAverageHistogram::clone()']870 ········['../classgmx_1_1AbstractAverageHistogram.xhtml#ae41c64629aa1fdbc6aa79f6e2c842c7f',·1,·'gmx::AbstractAverageHistogram::clone()']
871 ····]],871 ····]],
872 ····['cloneonspawnedthread_592',·['cloneOnSpawnedThread',·['../classgmx_1_1Mdrunner.xhtml#a7c3f076c50e8a65e46c45964586ef0ac',·1,·'gmx::Mdrunner']]],872 ····['cloneonspawnedthread_592',·['cloneOnSpawnedThread',·['../classgmx_1_1Mdrunner.xhtml#a7c3f076c50e8a65e46c45964586ef0ac',·1,·'gmx::Mdrunner']]],
873 ····['close_593',·['close',·['../classgmx_1_1StandardInputStream.xhtml#ad47b5f004707624d1ba6963f4cf425d2',·1,·'gmx::StandardInputStream::close()'],873 ····['close_593',·['close',·['../classgmx_1_1StandardInputStream.xhtml#ad47b5f004707624d1ba6963f4cf425d2',·1,·'gmx::StandardInputStream::close()'],
874 ········['../classgmx_1_1TextInputFile.xhtml#a206e851131b014eaef22f56217092e27',·1,·'gmx::TextInputFile::close()'],874 ········['../classgmx_1_1TextInputFile.xhtml#a206e851131b014eaef22f56217092e27',·1,·'gmx::TextInputFile::close()'],
875 ········['../classgmx_1_1TextOutputFile.xhtml#a0e112f234e5bc3c42d4d01087412af56',·1,·'gmx::TextOutputFile::close()'], 
876 ········['../classgmx_1_1StringOutputStream.xhtml#a72a9089f662d660616d6ed419d0efe93',·1,·'gmx::StringOutputStream::close()'], 
877 ········['../classgmx_1_1StringInputStream.xhtml#abb10d95192f3e79d19764855bcbd1739',·1,·'gmx::StringInputStream::close()'], 
878 ········['../classgmx_1_1TextReader.xhtml#a832ce4203c67ac5b86859954c8c96b8f',·1,·'gmx::TextReader::close()'], 
879 ········['../classgmx_1_1TextWriter.xhtml#aeb5664c1d354a35f621061f73888fb0d',·1,·'gmx::TextWriter::close()'],875 ········['../classgmx_1_1TextWriter.xhtml#aeb5664c1d354a35f621061f73888fb0d',·1,·'gmx::TextWriter::close()'],
 876 ········['../classgmx_1_1TextOutputStream.xhtml#a8c624ae9199c3bfd37bc35a1beb7852f',·1,·'gmx::TextOutputStream::close()'],
880 ········['../classgmx_1_1TextInputStream.xhtml#ad8b5700fa45d4eb69105238d9fdfaca7',·1,·'gmx::TextInputStream::close()'],877 ········['../classgmx_1_1TextInputStream.xhtml#ad8b5700fa45d4eb69105238d9fdfaca7',·1,·'gmx::TextInputStream::close()'],
881 ········['../classgmx_1_1TextOutputStream.xhtml#a8c624ae9199c3bfd37bc35a1beb7852f',·1,·'gmx::TextOutputStream::close()']878 ········['../classgmx_1_1TextReader.xhtml#a832ce4203c67ac5b86859954c8c96b8f',·1,·'gmx::TextReader::close()'],
 879 ········['../classgmx_1_1StringInputStream.xhtml#abb10d95192f3e79d19764855bcbd1739',·1,·'gmx::StringInputStream::close()'],
 880 ········['../classgmx_1_1StringOutputStream.xhtml#a72a9089f662d660616d6ed419d0efe93',·1,·'gmx::StringOutputStream::close()'],
 881 ········['../classgmx_1_1TextOutputFile.xhtml#a0e112f234e5bc3c42d4d01087412af56',·1,·'gmx::TextOutputFile::close()']
882 ····]],882 ····]],
883 ····['close_5fsymtab_594',·['close_symtab',·['../symtab_8h.xhtml#ac1312ed27b85821cdccb3980d81f8026',·1,·'symtab.h']]],883 ····['close_5fsymtab_594',·['close_symtab',·['../symtab_8h.xhtml#ac1312ed27b85821cdccb3980d81f8026',·1,·'symtab.h']]],
884 ····['closeafterforcecomputationcpu_595',·['closeAfterForceComputationCpu',·['../classDDBalanceRegionHandler.xhtml#a9bc7829dd33672815fe2aedb19c9e694',·1,·'DDBalanceRegionHandler']]],884 ····['closeafterforcecomputationcpu_595',·['closeAfterForceComputationCpu',·['../classDDBalanceRegionHandler.xhtml#a9bc7829dd33672815fe2aedb19c9e694',·1,·'DDBalanceRegionHandler']]],
885 ····['closeafterforcecomputationgpu_596',·['closeAfterForceComputationGpu',·['../classDDBalanceRegionHandler.xhtml#abadc78a643b88af716117f0b46ba5473',·1,·'DDBalanceRegionHandler']]],885 ····['closeafterforcecomputationgpu_596',·['closeAfterForceComputationGpu',·['../classDDBalanceRegionHandler.xhtml#abadc78a643b88af716117f0b46ba5473',·1,·'DDBalanceRegionHandler']]],
886 ····['closelogfile_597',·['closeLogFile',·['../namespacegmx.xhtml#a3f56998ae7a3341da06ae004304cf59a',·1,·'gmx']]],886 ····['closelogfile_597',·['closeLogFile',·['../namespacegmx.xhtml#a3f56998ae7a3341da06ae004304cf59a',·1,·'gmx']]],
887 ····['closestintegerpoint_598',·['closestIntegerPoint',·['../namespacegmx_1_1anonymous__namespace_02gausstransform_8cpp_03.xhtml#ac925f65cbdb7cead0786b53978e1b525',·1,·'gmx::anonymous_namespace{gausstransform.cpp}']]],887 ····['closestintegerpoint_598',·['closestIntegerPoint',·['../namespacegmx_1_1anonymous__namespace_02gausstransform_8cpp_03.xhtml#ac925f65cbdb7cead0786b53978e1b525',·1,·'gmx::anonymous_namespace{gausstransform.cpp}']]],
888 ····['closetimingregion_599',·['closetimingregion',·['../classGpuRegionTimerWrapper.xhtml#a5ca4467b5e552f30d68ab47a6b232a15',·1,·'GpuRegionTimerWrapper::closeTimingRegion()'],888 ····['closetimingregion_599',·['closetimingregion',·['../classGpuRegionTimerWrapper.xhtml#a5ca4467b5e552f30d68ab47a6b232a15',·1,·'GpuRegionTimerWrapper::closeTimingRegion()'],
Offset 891, 64 lines modifiedOffset 891, 64 lines modified
891 ····['cluster_20non_20bonded_20algorithm_600',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]],891 ····['cluster_20non_20bonded_20algorithm_600',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]],
892 ····['clusterdistancekerneltype_601',·['ClusterDistanceKernelType',·['../clusterdistancekerneltype_8h.xhtml#a6d74049ae6c72289649a7de671a92068',·1,·'clusterdistancekerneltype.h']]],892 ····['clusterdistancekerneltype_601',·['ClusterDistanceKernelType',·['../clusterdistancekerneltype_8h.xhtml#a6d74049ae6c72289649a7de671a92068',·1,·'clusterdistancekerneltype.h']]],
893 ····['clusterdistancekerneltype_2eh_602',·['clusterdistancekerneltype.h',·['../clusterdistancekerneltype_8h.xhtml',·1,·'']]],893 ····['clusterdistancekerneltype_2eh_602',·['clusterdistancekerneltype.h',·['../clusterdistancekerneltype_8h.xhtml',·1,·'']]],
894 ····['clusterflags_603',·['clusterFlags',·['../classNbnxm_1_1Grid.xhtml#a25b73d71c3c4250ca3f4940f16343cca',·1,·'Nbnxm::Grid']]],894 ····['clusterflags_603',·['clusterFlags',·['../classNbnxm_1_1Grid.xhtml#a25b73d71c3c4250ca3f4940f16343cca',·1,·'Nbnxm::Grid']]],
895 ····['clusterisperturbed_604',·['clusterIsPerturbed',·['../classNbnxm_1_1Grid.xhtml#a3bd7de7b1ee5ff89acfbc6971d520d98',·1,·'Nbnxm::Grid']]],895 ····['clusterisperturbed_604',·['clusterIsPerturbed',·['../classNbnxm_1_1Grid.xhtml#a3bd7de7b1ee5ff89acfbc6971d520d98',·1,·'Nbnxm::Grid']]],
896 ····['clusters_20of_20warps_605',·['of·packed·j·clusters·*·#·of·warps',·['../structNbnxm_1_1gpu__plist.xhtml#autotoc_md108',·1,·'']]],896 ····['clusters_20of_20warps_605',·['of·packed·j·clusters·*·#·of·warps',·['../structNbnxm_1_1gpu__plist.xhtml#autotoc_md108',·1,·'']]],
897 ····['clustsize_2ecpp_606',·['clustsize.cpp',·['../clustsize_8cpp.xhtml',·1,·'']]],897 ····['clustsize_2ecpp_606',·['clustsize.cpp',·['../clustsize_8cpp.xhtml',·1,·'']]],
898 ····['cmaincommandlinemodule_607',·['cmaincommandlinemodule',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule'],898 ····['cmaincommandlinemodule_607',·['cmaincommandlinemodule',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#a6f18d9768b76bfe7baa2d7edded17697',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule::CMainCommandLineModule()'],
899 ········['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#a6f18d9768b76bfe7baa2d7edded17697',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule::CMainCommandLineModule(const·char·*name,·const·char·*shortDescription,·CMainFunction·mainFunction,·InitSettingsFunction·settingsFunction)']899 ········['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule']
900 ····]],900 ····]],
 901 ····['cmainfunction_608',·['cmainfunction',·['../classgmx_1_1CommandLineModuleManager.xhtml#a68f43fb951aeecbeb60c81dd8701f921',·1,·'gmx::CommandLineModuleManager::CMainFunction'],
901 ····['cmainfunction_608',·['cmainfunction',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#aa280311ece46f8039e8f85c4a4ab069a',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule:[·...·truncated·by·diffoscope;·len:·17,·SHA:·18746c1cadb3aeaa35bdea7d11880e79575ac5b7cbbc95974b1a1fb87c8e725f·...·]902 ········['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#aa280311ece46f8039e8f85c4a4ab069a',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule::CMainFunction']
902 ········['../classgmx_1_1CommandLineModuleManager.xhtml#a68f43fb951aeecbeb60c81dd8701f921',·1,·'gmx::CommandLineModuleManager::CMainFunction'] 
903 ····]],903 ····]],
904 ····['cmake_20tt_20find_5fpackage_20gromacs_20tt_20details_609',·['CMake·&lt;tt&gt;find_package(GROMACS)&lt;/tt&gt;·details',·['../page_usinglibrary.xhtml#autotoc_md104',·1,·'']]],904 ····['cmake_20tt_20find_5fpackage_20gromacs_20tt_20details_609',·['CMake·&lt;tt&gt;find_package(GROMACS)&lt;/tt&gt;·details',·['../page_usinglibrary.xhtml#autotoc_md104',·1,·'']]],
905 ····['cmakegridspacing_610',·['cmakeGridSpacing',·['../structInteractionsOfType.xhtml#aa31e593a7781145976ce9a0dbeff4707',·1,·'InteractionsOfType']]],905 ····['cmakegridspacing_610',·['cmakeGridSpacing',·['../structInteractionsOfType.xhtml#aa31e593a7781145976ce9a0dbeff4707',·1,·'InteractionsOfType']]],
906 ····['cmap_611',·['cmap',·['../structInteractionsOfType.xhtml#a5f0efc5bc0b4fc4e1340124ba018be82',·1,·'InteractionsOfType']]],906 ····['cmap_611',·['cmap',·['../structInteractionsOfType.xhtml#a5f0efc5bc0b4fc4e1340124ba018be82',·1,·'InteractionsOfType']]],
907 ····['cmap_5fcoeff_5fmatrix_612',·['cmap_coeff_matrix',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#a190c75eabdb2aee14d27ec1e104e40b4',·1,·'anonymous_namespace{bonded.cpp}']]],907 ····['cmap_5fcoeff_5fmatrix_612',·['cmap_coeff_matrix',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#a190c75eabdb2aee14d27ec1e104e40b4',·1,·'anonymous_namespace{bonded.cpp}']]],
908 ····['cmap_5fdihs_613',·['cmap_dihs',·['../bonded_8h.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef&lt;·const·real·&gt;,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index):&#160;bonded.cpp'],908 ····['cmap_5fdihs_613',·['cmap_dihs',·['../bonded_8cpp.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef&lt;·const·real·&gt;,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index):&#160;bonded.cpp'],
909 ········['../bonded_8cpp.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef&lt;·const·real·&gt;,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index):&#160;bonded.cpp']909 ········['../bonded_8h.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef&lt;·const·real·&gt;,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index):&#160;bonded.cpp']
910 ····]],910 ····]],
911 ····['cmap_5fgrid_614',·['cmap_grid',·['../structgmx__ffparams__t.xhtml#ac2e74e19f8bfd1f20b5bba03606e8784',·1,·'gmx_ffparams_t']]],911 ····['cmap_5fgrid_614',·['cmap_grid',·['../structgmx__ffparams__t.xhtml#ac2e74e19f8bfd1f20b5bba03606e8784',·1,·'gmx_ffparams_t']]],
912 ····['cmap_5fsetup_5fgrid_5findex_615',·['cmap_setup_grid_index',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#ab633656da7c571ef07545dc40d63e57c',·1,·'anonymous_namespace{bonded.cpp}']]],912 ····['cmap_5fsetup_5fgrid_5findex_615',·['cmap_setup_grid_index',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#ab633656da7c571ef07545dc40d63e57c',·1,·'anonymous_namespace{bonded.cpp}']]],
913 ····['cmapangles_616',·['cmapAngles',·['../structInteractionsOfType.xhtml#af6f6506e959d239c2ca71de66cfbd3a0',·1,·'InteractionsOfType']]],913 ····['cmapangles_616',·['cmapAngles',·['../structInteractionsOfType.xhtml#af6f6506e959d239c2ca71de66cfbd3a0',·1,·'InteractionsOfType']]],
914 ····['cmapatomtypes_617',·['cmapAtomTypes',·['../structInteractionsOfType.xhtml#a6bded5f13e80427d245ffd81766e75b6',·1,·'InteractionsOfType']]],914 ····['cmapatomtypes_617',·['cmapAtomTypes',·['../structInteractionsOfType.xhtml#a6bded5f13e80427d245ffd81766e75b6',·1,·'InteractionsOfType']]],
915 ····['cmdlinehelpcontext_2ecpp_618',·['cmdlinehelpcontext.cpp',·['../cmdlinehelpcontext_8cpp.xhtml',·1,·'']]],915 ····['cmdlinehelpcontext_2ecpp_618',·['cmdlinehelpcontext.cpp',·['../cmdlinehelpcontext_8cpp.xhtml',·1,·'']]],
916 ····['cmdlinehelpcontext_2eh_619',·['cmdlinehelpcontext.h',·['../cmdlinehelpcontext_8h.xhtml',·1,·'']]],916 ····['cmdlinehelpcontext_2eh_619',·['cmdlinehelpcontext.h',·['../cmdlinehelpcontext_8h.xhtml',·1,·'']]],
917 ····['cmdlinehelpmodule_2ecpp_620',·['cmdlinehelpmodule.cpp',·['../cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'],917 ····['cmdlinehelpmodule_2ecpp_620',·['cmdlinehelpmodule.cpp',·['../tests_2cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'],
918 ········['../tests_2cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)']918 ········['../cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)']
919 ····]],919 ····]],
920 ····['cmdlinehelpmodule_2eh_621',·['cmdlinehelpmodule.h',·['../cmdlinehelpmodule_8h.xhtml',·1,·'']]],920 ····['cmdlinehelpmodule_2eh_621',·['cmdlinehelpmodule.h',·['../cmdlinehelpmodule_8h.xhtml',·1,·'']]],
921 ····['cmdlinehelpwriter_2ecpp_622',·['cmdlinehelpwriter.cpp',·['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'],921 ····['cmdlinehelpwriter_2ecpp_622',·['cmdlinehelpwriter.cpp',·['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'],
922 ········['../tests_2cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)']922 ········['../tests_2cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)']
923 ····]],923 ····]],
924 ····['cmdlinehelpwriter_2eh_623',·['cmdlinehelpwriter.h',·['../cmdlinehelpwriter_8h.xhtml',·1,·'']]],924 ····['cmdlinehelpwriter_2eh_623',·['cmdlinehelpwriter.h',·['../cmdlinehelpwriter_8h.xhtml',·1,·'']]],
925 ····['cmdlineinit_2ecpp_624',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]],925 ····['cmdlineinit_2ecpp_624',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]],
926 ····['cmdlineinit_2eh_625',·['cmdlineinit.h',·['../cmdlineinit_8h.xhtml',·1,·'']]],926 ····['cmdlineinit_2eh_625',·['cmdlineinit.h',·['../cmdlineinit_8h.xhtml',·1,·'']]],
927 ····['cmdlinemodule_2ecpp_626',·['cmdlinemodule.cpp',·['../cmdlinemodule_8cpp.xhtml',·1,·'']]],927 ····['cmdlinemodule_2ecpp_626',·['cmdlinemodule.cpp',·['../cmdlinemodule_8cpp.xhtml',·1,·'']]],
928 ····['cmdlinemodule_2eh_627',·['cmdlinemodule.h',·['../cmdlinemodule_8h.xhtml',·1,·'']]],928 ····['cmdlinemodule_2eh_627',·['cmdlinemodule.h',·['../cmdlinemodule_8h.xhtml',·1,·'']]],
929 ····['cmdlinemodulemanager_2ecpp_628',·['cmdlinemodulemanager.cpp',·['../cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'],929 ····['cmdlinemodulemanager_2ecpp_628',·['cmdlinemodulemanager.cpp',·['../tests_2cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
930 ········['../tests_2cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)']930 ········['../cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)']
931 ····]],931 ····]],
932 ····['cmdlinemodulemanager_2eh_629',·['cmdlinemodulemanager.h',·['../cmdlinemodulemanager_8h.xhtml',·1,·'']]],932 ····['cmdlinemodulemanager_2eh_629',·['cmdlinemodulemanager.h',·['../cmdlinemodulemanager_8h.xhtml',·1,·'']]],
933 ····['cmdlinemodulemanager_5fimpl_2eh_630',·['cmdlinemodulemanager_impl.h',·['../cmdlinemodulemanager__impl_8h.xhtml',·1,·'']]],933 ····['cmdlinemodulemanager_5fimpl_2eh_630',·['cmdlinemodulemanager_impl.h',·['../cmdlinemodulemanager__impl_8h.xhtml',·1,·'']]],
934 ····['cmdlinemodulemanagertest_2ecpp_631',·['cmdlinemodulemanagertest.cpp',·['../cmdlinemodulemanagertest_8cpp.xhtml',·1,·'']]],934 ····['cmdlinemodulemanagertest_2ecpp_631',·['cmdlinemodulemanagertest.cpp',·['../cmdlinemodulemanagertest_8cpp.xhtml',·1,·'']]],
935 ····['cmdlinemodulemanagertest_2eh_632',·['cmdlinemodulemanagertest.h',·['../cmdlinemodulemanagertest_8h.xhtml',·1,·'']]],935 ····['cmdlinemodulemanagertest_2eh_632',·['cmdlinemodulemanagertest.h',·['../cmdlinemodulemanagertest_8h.xhtml',·1,·'']]],
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Offset 287, 16 lines modifiedOffset 287, 16 lines modified
287 ····['ddcellindex_5f_163',·['ddCellIndex_',·['../classgmx_1_1DomainDecompositionBuilder_1_1Impl.xhtml#a102dec18a3918be269417ea2fcdbb481',·1,·'gmx::DomainDecompositionBuilder::Impl']]],287 ····['ddcellindex_5f_163',·['ddCellIndex_',·['../classgmx_1_1DomainDecompositionBuilder_1_1Impl.xhtml#a102dec18a3918be269417ea2fcdbb481',·1,·'gmx::DomainDecompositionBuilder::Impl']]],
288 ····['dddimensions_164',·['ddDimensions',·['../structDDGridSetup.xhtml#a59cdc4d9758766e953abab84320803b4',·1,·'DDGridSetup']]],288 ····['dddimensions_164',·['ddDimensions',·['../structDDGridSetup.xhtml#a59cdc4d9758766e953abab84320803b4',·1,·'DDGridSetup']]],
289 ····['ddgetatominfo_165',·['ddGetAtomInfo',·['../domdec_2utility_8h.xhtml#a155480532c8a0a96130c1751c53cc868',·1,·'utility.h']]],289 ····['ddgetatominfo_165',·['ddGetAtomInfo',·['../domdec_2utility_8h.xhtml#a155480532c8a0a96130c1751c53cc868',·1,·'utility.h']]],
290 ····['ddglatnr_166',·['ddglatnr',·['../domdec_8h.xhtml#a70ac1da1701259851d5c21c733196097',·1,·'domdec.cpp']]],290 ····['ddglatnr_166',·['ddglatnr',·['../domdec_8h.xhtml#a70ac1da1701259851d5c21c733196097',·1,·'domdec.cpp']]],
291 ····['ddgridsetup_167',·['DDGridSetup',·['../structDDGridSetup.xhtml',·1,·'']]],291 ····['ddgridsetup_167',·['DDGridSetup',·['../structDDGridSetup.xhtml',·1,·'']]],
292 ····['ddgridsetup_5f_168',·['ddGridSetup_',·['../classgmx_1_1DomainDecompositionBuilder_1_1Impl.xhtml#a4639d4e85f45dafe34dc33a8f6ed32e5',·1,·'gmx::DomainDecompositionBuilder::Impl']]],292 ····['ddgridsetup_5f_168',·['ddGridSetup_',·['../classgmx_1_1DomainDecompositionBuilder_1_1Impl.xhtml#a4639d4e85f45dafe34dc33a8f6ed32e5',·1,·'gmx::DomainDecompositionBuilder::Impl']]],
293 ····['ddist_169',·['ddist',·['../classgmx_1_1Lincs.xhtml#a0fc142a5b0b472519332eb5360c4dce4',·1,·'gmx::Lincs']]],293 ····['ddist_169',·['ddist',·['../classgmx_1_1Lincs.xhtml#a0fc142a5b0b472519332eb5360c4dce4',·1,·'gmx::Lincs']]],
294 ····['ddmain_170',·['ddmain',·['../domdec__struct_8h.xhtml#afc22561cfcc8cc698df33a9a9f95dcdf',·1,·'DDMAIN(const·gmx_domdec_t·*dd):&#160;domdec_struct.h'], 
295 ········['../domdec__struct_8h.xhtml#a95a945afe4a10023a43212167976cbe7',·1,·'DDMAIN(const·gmx_domdec_t·&amp;dd):&#160;domdec_struct.h']294 ····['ddmain_170',·['ddmain',·['../domdec__struct_8h.xhtml#a95a945afe4a10023a43212167976cbe7',·1,·'DDMAIN(const·gmx_domdec_t·&amp;dd):&#160;domdec_struct.h'],
 295 ········['../domdec__struct_8h.xhtml#afc22561cfcc8cc698df33a9a9f95dcdf',·1,·'DDMAIN(const·gmx_domdec_t·*dd):&#160;domdec_struct.h']
296 ····]],296 ····]],
297 ····['ddmainrank_171',·['DDMAINRANK',·['../domdec__network_8cpp.xhtml#ada792d6e90ffaa2bda1705b837d66c1f',·1,·'domdec_network.cpp']]],297 ····['ddmainrank_171',·['DDMAINRANK',·['../domdec__network_8cpp.xhtml#ada792d6e90ffaa2bda1705b837d66c1f',·1,·'domdec_network.cpp']]],
298 ····['ddp_5fcount_172',·['ddp_count',·['../classt__state.xhtml#a16d8fbbde860871a552cd45c1d97aece',·1,·'t_state']]],298 ····['ddp_5fcount_172',·['ddp_count',·['../classt__state.xhtml#a16d8fbbde860871a552cd45c1d97aece',·1,·'t_state']]],
299 ····['ddp_5fcount_5fcg_5fgl_173',·['ddp_count_cg_gl',·['../classt__state.xhtml#af356c56c20ca98911e9dbe927bacd488',·1,·'t_state']]],299 ····['ddp_5fcount_5fcg_5fgl_173',·['ddp_count_cg_gl',·['../classt__state.xhtml#af356c56c20ca98911e9dbe927bacd488',·1,·'t_state']]],
300 ····['ddpairinteractionranges_174',·['DDPairInteractionRanges',·['../structDDPairInteractionRanges.xhtml',·1,·'']]],300 ····['ddpairinteractionranges_174',·['DDPairInteractionRanges',·['../structDDPairInteractionRanges.xhtml',·1,·'']]],
301 ····['ddpcountpairsearch_175',·['ddpCountPairSearch',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#abade9224d4cd94ec258e7a382684c401',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]],301 ····['ddpcountpairsearch_175',·['ddpCountPairSearch',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#abade9224d4cd94ec258e7a382684c401',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]],
302 ····['ddrankorder_176',·['DdRankOrder',·['../namespacegmx.xhtml#a9b2fd966c924499613d71524e3d69471',·1,·'gmx']]],302 ····['ddrankorder_176',·['DdRankOrder',·['../namespacegmx.xhtml#a9b2fd966c924499613d71524e3d69471',·1,·'gmx']]],
Offset 402, 20 lines modifiedOffset 402, 20 lines modified
402 ····['define2dhalowith1pulseineachdim_244',·['define2dHaloWith1PulseInEachDim',·['../namespacegmx_1_1test_1_1anonymous__namespace_02haloexchange__mpi_8cpp_03.xhtml#ae96abac5713f4a3485a68332aea35818',·1,·'gmx::test::anonymous_namespace{haloexchange_mpi.cpp}']]],402 ····['define2dhalowith1pulseineachdim_244',·['define2dHaloWith1PulseInEachDim',·['../namespacegmx_1_1test_1_1anonymous__namespace_02haloexchange__mpi_8cpp_03.xhtml#ae96abac5713f4a3485a68332aea35818',·1,·'gmx::test::anonymous_namespace{haloexchange_mpi.cpp}']]],
403 ····['define2dhalowith2pulsesindim1_245',·['define2dHaloWith2PulsesInDim1',·['../namespacegmx_1_1test_1_1anonymous__namespace_02haloexchange__mpi_8cpp_03.xhtml#ad71878f2ea271f402286a45b0a6e0a5a',·1,·'gmx::test::anonymous_namespace{haloexchange_mpi.cpp}']]],403 ····['define2dhalowith2pulsesindim1_245',·['define2dHaloWith2PulsesInDim1',·['../namespacegmx_1_1test_1_1anonymous__namespace_02haloexchange__mpi_8cpp_03.xhtml#ad71878f2ea271f402286a45b0a6e0a5a',·1,·'gmx::test::anonymous_namespace{haloexchange_mpi.cpp}']]],
404 ····['define2dranktopology_246',·['define2dRankTopology',·['../namespacegmx_1_1test_1_1anonymous__namespace_02haloexchange__mpi_8cpp_03.xhtml#a4b9107a64b196c60562ef8e3fa59e7ec',·1,·'gmx::test::anonymous_namespace{haloexchange_mpi.cpp}']]],404 ····['define2dranktopology_246',·['define2dRankTopology',·['../namespacegmx_1_1test_1_1anonymous__namespace_02haloexchange__mpi_8cpp_03.xhtml#a4b9107a64b196c60562ef8e3fa59e7ec',·1,·'gmx::test::anonymous_namespace{haloexchange_mpi.cpp}']]],
405 ····['defining_20parameters_247',·['Defining·parameters',·['../page_module_selection_custom.xhtml#selmethods_params',·1,·'']]],405 ····['defining_20parameters_247',·['Defining·parameters',·['../page_module_selection_custom.xhtml#selmethods_params',·1,·'']]],
406 ····['defining_5fatomnames_248',·['defining_atomnames',·['../structgmx__help__make__index__group.xhtml#ad6a6a6ab8817f747bddfcb55cbd370f1',·1,·'gmx_help_make_index_group']]],406 ····['defining_5fatomnames_248',·['defining_atomnames',·['../structgmx__help__make__index__group.xhtml#ad6a6a6ab8817f747bddfcb55cbd370f1',·1,·'gmx_help_make_index_group']]],
407 ····['definition_20of_20main_249',·['Definition·of·main()',·['../page_analysistemplate.xhtml#autotoc_md87',·1,·'']]],407 ····['definition_20of_20main_249',·['Definition·of·main()',·['../page_analysistemplate.xhtml#autotoc_md87',·1,·'']]],
408 ····['definitions_250',·['Global·definitions',·['../page_analysistemplate.xhtml#autotoc_md80',·1,·'']]],408 ····['definitions_250',·['Global·definitions',·['../page_analysistemplate.xhtml#autotoc_md80',·1,·'']]],
 409 ····['deform_251',·['deform',·['../classgmx_1_1Update.xhtml#a14740b23785220c74619a511c8797da5',·1,·'gmx::Update::deform()'],
409 ····['deform_251',·['deform',·['../classgmx_1_1BoxDeformationHandle.xhtml#a3880b40eec79e95d0361da2cdd0bf6ab',·1,·'gmx::BoxDeformationHandle::deform'],410 ········['../classgmx_1_1BoxDeformationHandle.xhtml#a3880b40eec79e95d0361da2cdd0bf6ab',·1,·'gmx::BoxDeformationHandle::deform']
410 ········['../classgmx_1_1Update.xhtml#a14740b23785220c74619a511c8797da5',·1,·'gmx::Update::deform()'] 
411 ····]],411 ····]],
412 ····['deform_5f_252',·['deform_',·['../classgmx_1_1LegacySimulatorData.xhtml#adf07f26c7bde560e1f57f16b1337ece7',·1,·'gmx::LegacySimulatorData']]],412 ····['deform_5f_252',·['deform_',·['../classgmx_1_1LegacySimulatorData.xhtml#adf07f26c7bde560e1f57f16b1337ece7',·1,·'gmx::LegacySimulatorData']]],
413 ····['degangle_253',·['degangle',·['../structgmx__potfit.xhtml#a2a8438cb2c51067eba63303629530384',·1,·'gmx_potfit::degangle'], 
414 ········['../structgmx__enfrotgrp.xhtml#a2b250cf3d95bdc8811084fe558db99ba',·1,·'gmx_enfrotgrp::degangle']413 ····['degangle_253',·['degangle',·['../structgmx__enfrotgrp.xhtml#a2b250cf3d95bdc8811084fe558db99ba',·1,·'gmx_enfrotgrp::degangle'],
 414 ········['../structgmx__potfit.xhtml#a2a8438cb2c51067eba63303629530384',·1,·'gmx_potfit::degangle']
415 ····]],415 ····]],
416 ····['dekindl_254',·['dekindl',·['../classekinstate__t.xhtml#ac501ff85da4e6e774e195195cde0f2f4',·1,·'ekinstate_t']]],416 ····['dekindl_254',·['dekindl',·['../classekinstate__t.xhtml#ac501ff85da4e6e774e195195cde0f2f4',·1,·'ekinstate_t']]],
417 ····['delete_255',·['Delete',·['../hackblock_8h.xhtml#ab96ef77f5bc6d24fdd272b55f5206016af2a6c498fb90ee345d997f888fce3b18',·1,·'hackblock.h']]],417 ····['delete_255',·['Delete',·['../hackblock_8h.xhtml#ab96ef77f5bc6d24fdd272b55f5206016af2a6c498fb90ee345d997f888fce3b18',·1,·'hackblock.h']]],
418 ····['delta_256',·['delta',·['../structgmx_1_1shakedata.xhtml#ada6e3fa62160ae084f062119c19edea0',·1,·'gmx::shakedata']]],418 ····['delta_256',·['delta',·['../structgmx_1_1shakedata.xhtml#ada6e3fa62160ae084f062119c19edea0',·1,·'gmx::shakedata']]],
419 ····['delta_5ft_257',·['delta_t',·['../structgmx_1_1SimulationTimeStep.xhtml#a055feb75c2e4d57dd6ffd93a9b76a40e',·1,·'gmx::SimulationTimeStep']]],419 ····['delta_5ft_257',·['delta_t',·['../structgmx_1_1SimulationTimeStep.xhtml#a055feb75c2e4d57dd6ffd93a9b76a40e',·1,·'gmx::SimulationTimeStep']]],
420 ····['deltaf_258',·['deltaF',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#ac47eaa589ac996758135ea626493d11d',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],420 ····['deltaf_258',·['deltaF',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#ac47eaa589ac996758135ea626493d11d',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],
421 ····['deltaf0_259',·['deltaF0',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#a7d9a5161da847e2b9c6d52781093c247',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],421 ····['deltaf0_259',·['deltaF0',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#a7d9a5161da847e2b9c6d52781093c247',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],
Offset 430, 21 lines modifiedOffset 430, 21 lines modified
430 ····['densityfit_2eh_266',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],430 ····['densityfit_2eh_266',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],
431 ····['densityfitting_267',·['densityfitting',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml#aa9839e3720a234577932dd8d647294c7',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting::DensityFitting()'],431 ····['densityfitting_267',·['densityfitting',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml#aa9839e3720a234577932dd8d647294c7',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting::DensityFitting()'],
432 ········['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting']432 ········['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting']
433 ····]],433 ····]],
434 ····['densityfitting_2ecpp_268',·['densityfitting.cpp',·['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],434 ····['densityfitting_2ecpp_268',·['densityfitting.cpp',·['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],
435 ········['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']435 ········['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']
436 ····]],436 ····]],
437 ····['densityfittingamplitudelookup_269',·['densityfittingamplitudelookup',·['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#aa1d2f04d8d7aae3d5622cd859a201cbb',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup()'],437 ····['densityfittingamplitudelookup_269',·['densityfittingamplitudelookup',·['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#aa1d2f04d8d7aae3d5622cd859a201cbb',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(const·DensityFittingAmplitudeLookup·&amp;other)'],
438 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml',·1,·'gmx::DensityFittingAmplitudeLookup'],438 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#ab390de4a90d3b122cc6d54862bfc158f',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(DensityFittingAmplitudeLookup·&amp;&amp;other)·noexcept'],
439 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#a59fc899181bcc2e39969fa553087444d',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(const·DensityFittingAmplitudeMethod·&amp;method)'],439 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#a59fc899181bcc2e39969fa553087444d',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(const·DensityFittingAmplitudeMethod·&amp;method)'],
440 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#ab390de4a90d3b122cc6d54862bfc158f',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(DensityFittingAmplitudeLookup·&amp;&amp;other)·noexcept']440 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml',·1,·'gmx::DensityFittingAmplitudeLookup']
441 ····]],441 ····]],
442 ····['densityfittingamplitudelookup_2ecpp_270',·['densityfittingamplitudelookup.cpp',·['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],442 ····['densityfittingamplitudelookup_2ecpp_270',·['densityfittingamplitudelookup.cpp',·['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],
443 ········['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']443 ········['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']
444 ····]],444 ····]],
445 ····['densityfittingamplitudelookup_2eh_271',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],445 ····['densityfittingamplitudelookup_2eh_271',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],
446 ····['densityfittingamplitudemethod_272',·['DensityFittingAmplitudeMethod',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099f',·1,·'gmx']]],446 ····['densityfittingamplitudemethod_272',·['DensityFittingAmplitudeMethod',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099f',·1,·'gmx']]],
447 ····['densityfittingforce_273',·['densityfittingforce',·['../classgmx_1_1DensityFittingForce.xhtml#a3eab6d07afa82b211179207e74072ff0',·1,·'gmx::DensityFittingForce::DensityFittingForce(DensityFittingForce·&amp;&amp;other)·noexcept'],447 ····['densityfittingforce_273',·['densityfittingforce',·['../classgmx_1_1DensityFittingForce.xhtml#a3eab6d07afa82b211179207e74072ff0',·1,·'gmx::DensityFittingForce::DensityFittingForce(DensityFittingForce·&amp;&amp;other)·noexcept'],
448 ········['../classgmx_1_1DensityFittingForce.xhtml#a4515397cbc5ab594e8e9066302e02eca',·1,·'gmx::DensityFittingForce::DensityFittingForce(const·DensityFittingForce·&amp;other)'],448 ········['../classgmx_1_1DensityFittingForce.xhtml#a4515397cbc5ab594e8e9066302e02eca',·1,·'gmx::DensityFittingForce::DensityFittingForce(const·DensityFittingForce·&amp;other)'],
449 ········['../classgmx_1_1DensityFittingForce.xhtml#acf7150b3a47e6878c27e70500c221d4a',·1,·'gmx::DensityFittingForce::DensityFittingForce(const·GaussianSpreadKernelParameters::Shape·&amp;kernelShapeParameters)'],449 ········['../classgmx_1_1DensityFittingForce.xhtml#acf7150b3a47e6878c27e70500c221d4a',·1,·'gmx::DensityFittingForce::DensityFittingForce(const·GaussianSpreadKernelParameters::Shape·&amp;kernelShapeParameters)'],
450 ········['../classgmx_1_1DensityFittingForce.xhtml',·1,·'gmx::DensityFittingForce']450 ········['../classgmx_1_1DensityFittingForce.xhtml',·1,·'gmx::DensityFittingForce']
Offset 492, 48 lines modifiedOffset 492, 48 lines modified
492 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy']492 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy']
493 ····]],493 ····]],
494 ····['dependency_20graph_298',·['Module·dependency·graph',·['../page_modulegraph.xhtml',·1,·'index']]],494 ····['dependency_20graph_298',·['Module·dependency·graph',·['../page_modulegraph.xhtml',·1,·'index']]],
495 ····['derivative_299',·['derivative',·['../structgmx_1_1AnalyticalSplineTableInput.xhtml#a5163c472ec0200cd6c48dbe7075fb5f7',·1,·'gmx::AnalyticalSplineTableInput::derivative'],495 ····['derivative_299',·['derivative',·['../structgmx_1_1AnalyticalSplineTableInput.xhtml#a5163c472ec0200cd6c48dbe7075fb5f7',·1,·'gmx::AnalyticalSplineTableInput::derivative'],
496 ········['../structgmx_1_1NumericalSplineTableInput.xhtml#a5a62dd0e8d27284c17e59cd4a6e2f1b5',·1,·'gmx::NumericalSplineTableInput::derivative']496 ········['../structgmx_1_1NumericalSplineTableInput.xhtml#a5a62dd0e8d27284c17e59cd4a6e2f1b5',·1,·'gmx::NumericalSplineTableInput::derivative']
497 ····]],497 ····]],
498 ····['desc_300',·['desc',·['../structgmx_1_1NumericalSplineTableInput.xhtml#aba3ffc19198b0d92459e38438108c8a7',·1,·'gmx::NumericalSplineTableInput::desc'],498 ····['desc_300',·['desc',·['../structgmx_1_1NumericalSplineTableInput.xhtml#aba3ffc19198b0d92459e38438108c8a7',·1,·'gmx::NumericalSplineTableInput::desc'],
499 ········['../structgmx_1_1AnalyticalSplineTableInput.xhtml#ad7e66e1eeabef358ddca2a3a2e61a014',·1,·'gmx::AnalyticalSplineTableInput::desc'],499 ········['../structt__pargs.xhtml#a6ad8807f446b68a6c8d764ecb394feaa',·1,·'t_pargs::desc'],
500 ········['../structt__mapping.xhtml#a54274cff3328fdfdfdbaf6d8ffc5a5f4',·1,·'t_mapping::desc'],500 ········['../structt__mapping.xhtml#a54274cff3328fdfdfdbaf6d8ffc5a5f4',·1,·'t_mapping::desc'],
501 ········['../structt__pargs.xhtml#a6ad8807f446b68a6c8d764ecb394feaa',·1,·'t_pargs::desc']501 ········['../structgmx_1_1AnalyticalSplineTableInput.xhtml#ad7e66e1eeabef358ddca2a3a2e61a014',·1,·'gmx::AnalyticalSplineTableInput::desc']
502 ····]],502 ····]],
503 ····['describenegationto_301',·['describenegationto',·['../classgmx_1_1test_1_1RVecMatcher.xhtml#ab02df23c3cd9e32c6254e8ad62748005',·1,·'gmx::test::RVecMatcher::DescribeNegationTo()'],503 ····['describenegationto_301',·['describenegationto',·['../classgmx_1_1test_1_1RVecMatcher.xhtml#ab02df23c3cd9e32c6254e8ad62748005',·1,·'gmx::test::RVecMatcher::DescribeNegationTo()'],
504 ········['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml#a8cbd9361625afc3b74009bbcb416fbb4',·1,·'gmx::test::FloatTypeMatcher::DescribeNegationTo(::std::ostream·*os)·const·override']504 ········['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml#a8cbd9361625afc3b74009bbcb416fbb4',·1,·'gmx::test::FloatTypeMatcher::DescribeNegationTo()']
505 ····]],505 ····]],
 506 ····['describeto_302',·['describeto',·['../classgmx_1_1test_1_1RVecMatcher.xhtml#ac3354c999725b25550a018becd653f1b',·1,·'gmx::test::RVecMatcher::DescribeTo()'],
506 ····['describeto_302',·['describeto',·['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml#aa882969bb93bebe25b7c701c0a947e26',·1,·'gmx::test::FloatTypeMatcher::DescribeTo()'],507 ········['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml#aa882969bb93bebe25b7c701c0a947e26',·1,·'gmx::test::FloatTypeMatcher::DescribeTo()']
507 ········['../classgmx_1_1test_1_1RVecMatcher.xhtml#ac3354c999725b25550a018becd653f1b',·1,·'gmx::test::RVecMatcher::DescribeTo()'] 
508 ····]],508 ····]],
509 ····['description_303',·['description',·['../structgmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03_1_1RocfftPlan.xhtml#a2ce7c036a12aa1982e980ae1e12c64e2',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}::RocfftPlan::description'],509 ····['description_303',·['description',·['../structgmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03_1_1RocfftPlan.xhtml#a2ce7c036a12aa1982e980ae1e12c64e2',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}::RocfftPlan::description'],
510 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a08320dd95f482581101dcf84bcef3ebe',·1,·'gmx::AbstractOptionStorage::description()'],510 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a08320dd95f482581101dcf84bcef3ebe',·1,·'gmx::AbstractOptionStorage::description()'],
511 ········['../structgmx_1_1SelectionOptionManager_1_1Impl_1_1SelectionRequest.xhtml#a6777db2e9afb678f3ff6ac689de39250',·1,·'gmx::SelectionOptionManager::Impl::SelectionRequest::description()'],511 ········['../classgmx_1_1OptionTemplate.xhtml#a93759b48e9bcea7a890ae6f2bf850ff5',·1,·'gmx::OptionTemplate::description()'],
512 ········['../classgmx_1_1test_1_1TestDevice.xhtml#af1fb2dc1689e264a1f3966d30d62e8a9',·1,·'gmx::test::TestDevice::description()'],512 ········['../classgmx_1_1test_1_1TestDevice.xhtml#af1fb2dc1689e264a1f3966d30d62e8a9',·1,·'gmx::test::TestDevice::description()'],
513 ········['../classgmx_1_1OptionTemplate.xhtml#a93759b48e9bcea7a890ae6f2bf850ff5',·1,·'gmx::OptionTemplate::description()']513 ········['../structgmx_1_1SelectionOptionManager_1_1Impl_1_1SelectionRequest.xhtml#a6777db2e9afb678f3ff6ac689de39250',·1,·'gmx::SelectionOptionManager::Impl::SelectionRequest::description()']
514 ····]],514 ····]],
515 ····['descriptionwithoptiondetails_304',·['descriptionWithOptionDetails',·['../group__module__commandline.xhtml#gafaaf978f9092c4e61c8413eb51388ced',·1,·'gmx::anonymous_namespace{cmdlinehelpwriter.cpp}']]],515 ····['descriptionwithoptiondetails_304',·['descriptionWithOptionDetails',·['../group__module__commandline.xhtml#gafaaf978f9092c4e61c8413eb51388ced',·1,·'gmx::anonymous_namespace{cmdlinehelpwriter.cpp}']]],
516 ····['deserialize_305',·['deserialize',·['../classgmx_1_1ReadCheckpointDataHolder.xhtml#a573409925bc2f6892828dc2d554f880f',·1,·'gmx::ReadCheckpointDataHolder']]],516 ····['deserialize_305',·['deserialize',·['../classgmx_1_1ReadCheckpointDataHolder.xhtml#a573409925bc2f6892828dc2d554f880f',·1,·'gmx::ReadCheckpointDataHolder']]],
517 ····['deserializedeviceinformations_306',·['deserializedeviceinformations',·['../device__management__common_8cpp.xhtml#ac3e3321880ed36de04c55efebb5fcbef',·1,·'deserializeDeviceInformations(gmx::ISerializer·*serializer):&#160;device_management_common.cpp'],517 ····['deserializedeviceinformations_306',·['deserializedeviceinformations',·['../device__management_8h.xhtml#ac3e3321880ed36de04c55efebb5fcbef',·1,·'deserializeDeviceInformations(gmx::ISerializer·*serializer):&#160;device_management_common.cpp'],
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522 ····]],522 ····]],
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529 ····['design_20of_20the_20gromacs_20simd_20module_312',·['Design·of·the·GROMACS·SIMD·module',·['../page_simd.xhtml#autotoc_md57',·1,·'']]],529 ····['design_20of_20the_20gromacs_20simd_20module_312',·['Design·of·the·GROMACS·SIMD·module',·['../page_simd.xhtml#autotoc_md57',·1,·'']]],
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534 ····['details_315',·['details',·['../page_usinglibrary.xhtml#autotoc_md104',·1,·'CMake·&lt;tt&gt;find_package(GROMACS)&lt;/tt&gt;·details'],534 ····['details_315',·['details',·['../page_usinglibrary.xhtml#autotoc_md104',·1,·'CMake·&lt;tt&gt;find_package(GROMACS)&lt;/tt&gt;·details'],
535 ········['../page_modularsimulator.xhtml#autotoc_md43',·1,·'Implementation·details'],535 ········['../page_modularsimulator.xhtml#autotoc_md43',·1,·'Implementation·details'],
536 ········['../page_modularsimulator.xhtml#autotoc_md20',·1,·'Signaller·and·element·details']536 ········['../page_modularsimulator.xhtml#autotoc_md20',·1,·'Signaller·and·element·details']
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568 ····['device_5fcontext_5fsycl_2ecpp_344',·['device_context_sycl.cpp',·['../device__context__sycl_8cpp.xhtml',·1,·'']]],568 ····['device_5fcontext_5fsycl_2ecpp_344',·['device_context_sycl.cpp',·['../device__context__sycl_8cpp.xhtml',·1,·'']]],
569 ····['device_5fevent_2eh_345',·['device_event.h',·['../device__event_8h.xhtml',·1,·'']]],569 ····['device_5fevent_2eh_345',·['device_event.h',·['../device__event_8h.xhtml',·1,·'']]],
570 ····['device_5fevent_5focl_2eh_346',·['device_event_ocl.h',·['../device__event__ocl_8h.xhtml',·1,·'']]],570 ····['device_5fevent_5focl_2eh_346',·['device_event_ocl.h',·['../device__event__ocl_8h.xhtml',·1,·'']]],
571 ····['device_5fevent_5fsycl_2eh_347',·['device_event_sycl.h',·['../device__event__sycl_8h.xhtml',·1,·'']]],571 ····['device_5fevent_5fsycl_2eh_347',·['device_event_sycl.h',·['../device__event__sycl_8h.xhtml',·1,·'']]],
572 ····['device_5finformation_2eh_348',·['device_information.h',·['../device__information_8h.xhtml',·1,·'']]],572 ····['device_5finformation_2eh_348',·['device_information.h',·['../device__information_8h.xhtml',·1,·'']]],
573 ····['device_5fmanagement_2ecpp_349',·['device_management.cpp',·['../tests_2device__management_8cpp.xhtml',·1,·'(Global·Namespace)'],573 ····['device_5fmanagement_2ecpp_349',·['device_management.cpp',·['../device__management_8cpp.xhtml',·1,·'(Global·Namespace)'],
574 ········['../device__management_8cpp.xhtml',·1,·'(Global·Namespace)']574 ········['../tests_2device__management_8cpp.xhtml',·1,·'(Global·Namespace)']
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577 ····['device_5fmanagement_5fcommon_2ecpp_351',·['device_management_common.cpp',·['../device__management__common_8cpp.xhtml',·1,·'']]],577 ····['device_5fmanagement_5fcommon_2ecpp_351',·['device_management_common.cpp',·['../device__management__common_8cpp.xhtml',·1,·'']]],
578 ····['device_5fmanagement_5focl_2ecpp_352',·['device_management_ocl.cpp',·['../device__management__ocl_8cpp.xhtml',·1,·'']]],578 ····['device_5fmanagement_5focl_2ecpp_352',·['device_management_ocl.cpp',·['../device__management__ocl_8cpp.xhtml',·1,·'']]],
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210 ········['../classgmx_1_1FirstOrderPressureCoupling.xhtml#aec7ffcdd32bff4f607eb512a1ed23396',·1,·'gmx::FirstOrderPressureCoupling::elementTeardown()'],211 ········['../classgmx_1_1FirstOrderPressureCoupling.xhtml#aec7ffcdd32bff4f607eb512a1ed23396',·1,·'gmx::FirstOrderPressureCoupling::elementTeardown()'],
211 ········['../classgmx_1_1VelocityScalingTemperatureCoupling.xhtml#a821a89ff6699c89d683385c49eec9bf0',·1,·'gmx::VelocityScalingTemperatureCoupling::elementTeardown()'], 
212 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#a4e578e1fd194892908f5771cdc561ca7',·1,·'gmx::StatePropagatorData::Element::elementTeardown()'],212 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#a4e578e1fd194892908f5771cdc561ca7',·1,·'gmx::StatePropagatorData::Element::elementTeardown()'],
213 ········['../classgmx_1_1PullElement.xhtml#a21c27b75e33ff37216a6c96c3c42af3a',·1,·'gmx::PullElement::elementTeardown()'],213 ········['../classgmx_1_1PullElement.xhtml#a21c27b75e33ff37216a6c96c3c42af3a',·1,·'gmx::PullElement::elementTeardown()'],
214 ········['../classgmx_1_1Propagator.xhtml#a9b683610f0f9a0ed38bc8990a445114b',·1,·'gmx::Propagator::elementTeardown()'],214 ········['../classgmx_1_1Propagator.xhtml#a9b683610f0f9a0ed38bc8990a445114b',·1,·'gmx::Propagator::elementTeardown()'],
215 ········['../classgmx_1_1ParrinelloRahmanBarostat.xhtml#a6e395d33bdfc840d85fbb10910be42f6',·1,·'gmx::ParrinelloRahmanBarostat::elementTeardown()'],215 ········['../classgmx_1_1ParrinelloRahmanBarostat.xhtml#a6e395d33bdfc840d85fbb10910be42f6',·1,·'gmx::ParrinelloRahmanBarostat::elementTeardown()'],
216 ········['../classgmx_1_1NoseHooverChainsElement.xhtml#a76fcb3e27a964b269535dd0df48c0d9e',·1,·'gmx::NoseHooverChainsElement::elementTeardown()'],216 ········['../classgmx_1_1NoseHooverChainsElement.xhtml#a76fcb3e27a964b269535dd0df48c0d9e',·1,·'gmx::NoseHooverChainsElement::elementTeardown()'],
217 ········['../classgmx_1_1MttkBoxScaling.xhtml#a119a100fb779b486cb1333ff53039ab4',·1,·'gmx::MttkBoxScaling::elementTeardown()'],217 ········['../classgmx_1_1MttkBoxScaling.xhtml#a119a100fb779b486cb1333ff53039ab4',·1,·'gmx::MttkBoxScaling::elementTeardown()'],
218 ········['../classgmx_1_1MttkElement.xhtml#a1c9cb4e9c8c96b80e10e448daa18d98f',·1,·'gmx::MttkElement::elementTeardown()'],218 ········['../classgmx_1_1MttkElement.xhtml#a1c9cb4e9c8c96b80e10e448daa18d98f',·1,·'gmx::MttkElement::elementTeardown()'],
Offset 296, 16 lines modifiedOffset 296, 16 lines modified
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297 ········['../group__module__utility.xhtml#ga8b22d1fd014cc09c9cf7c4c1615c0a1b',·1,·'gmx::endsWith(const·char·*str,·const·char·*suffix)']297 ········['../group__module__utility.xhtml#ga8b22d1fd014cc09c9cf7c4c1615c0a1b',·1,·'gmx::endsWith(const·char·*str,·const·char·*suffix)']
298 ····]],298 ····]],
299 ····['ener_5ffile_5fptr_179',·['ener_file_ptr',·['../namespacegmx_1_1test.xhtml#a0cf2e1e7224ea64c7762046eb635aaf7',·1,·'gmx::test']]],299 ····['ener_5ffile_5fptr_179',·['ener_file_ptr',·['../namespacegmx_1_1test.xhtml#a0cf2e1e7224ea64c7762046eb635aaf7',·1,·'gmx::test']]],
300 ····['enerd_180',·['enerd',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a83462cc2d6b109c54ec0cdbfc9e3a8a1',·1,·'gmx::ImdSession::Impl::enerd'],300 ····['enerd_180',·['enerd',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a83462cc2d6b109c54ec0cdbfc9e3a8a1',·1,·'gmx::ImdSession::Impl::enerd'],
301 ········['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#aeab7e09583e2548fcad4ad6da7ca3f44',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator::enerd']301 ········['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#aeab7e09583e2548fcad4ad6da7ca3f44',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator::enerd']
302 ····]],302 ····]],
303 ····['enerd_5f_181',·['enerd_',·['../classgmx_1_1ForceProviderOutput.xhtml#a3e5d000f356115dc346c471eeac73932',·1,·'gmx::ForceProviderOutput::enerd_'], 
304 ········['../classgmx_1_1LegacySimulatorData.xhtml#a4901f0e36e8dfe004872229cd1b17dd3',·1,·'gmx::LegacySimulatorData::enerd_']303 ····['enerd_5f_181',·['enerd_',·['../classgmx_1_1LegacySimulatorData.xhtml#a4901f0e36e8dfe004872229cd1b17dd3',·1,·'gmx::LegacySimulatorData::enerd_'],
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305 ····]],305 ····]],
306 ····['enerdata_182',·['enerdata',·['../classgmx_1_1EnergyData.xhtml#af5ff3635bcb4d7ecb90c7505f70ff2d9',·1,·'gmx::EnergyData::enerdata()'],306 ····['enerdata_182',·['enerdata',·['../classgmx_1_1EnergyData.xhtml#af5ff3635bcb4d7ecb90c7505f70ff2d9',·1,·'gmx::EnergyData::enerdata()'],
307 ········['../classgmx_1_1EnergyData.xhtml#a8253678c958de422aabdc634405276ca',·1,·'gmx::EnergyData::enerdata()·const']307 ········['../classgmx_1_1EnergyData.xhtml#a8253678c958de422aabdc634405276ca',·1,·'gmx::EnergyData::enerdata()·const']
308 ····]],308 ····]],
309 ····['enerdata_2ecpp_183',·['enerdata.cpp',·['../enerdata_8cpp.xhtml',·1,·'']]],309 ····['enerdata_2ecpp_183',·['enerdata.cpp',·['../enerdata_8cpp.xhtml',·1,·'']]],
310 ····['enerdata_5f_184',·['enerdata_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a178388e022bfe1f8dad4cc34a318ae9d',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest']]],310 ····['enerdata_5f_184',·['enerdata_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a178388e022bfe1f8dad4cc34a318ae9d',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest']]],
311 ····['enerdata_5fp_185',·['enerdata_p',·['../structgmx_1_1SimulatorStateData.xhtml#a44621b372fa324a71ad5d4791f55e561',·1,·'gmx::SimulatorStateData']]],311 ····['enerdata_5fp_185',·['enerdata_p',·['../structgmx_1_1SimulatorStateData.xhtml#a44621b372fa324a71ad5d4791f55e561',·1,·'gmx::SimulatorStateData']]],
Offset 337, 16 lines modifiedOffset 337, 16 lines modified
337 ····['energycomparison_198',·['energycomparison',·['../classgmx_1_1test_1_1EnergyComparison.xhtml',·1,·'gmx::test::EnergyComparison'],337 ····['energycomparison_198',·['energycomparison',·['../classgmx_1_1test_1_1EnergyComparison.xhtml',·1,·'gmx::test::EnergyComparison'],
338 ········['../classgmx_1_1test_1_1EnergyComparison.xhtml#aafb2df8ef9a36c6a3cffc8ac57cf2645',·1,·'gmx::test::EnergyComparison::EnergyComparison()']338 ········['../classgmx_1_1test_1_1EnergyComparison.xhtml#aafb2df8ef9a36c6a3cffc8ac57cf2645',·1,·'gmx::test::EnergyComparison::EnergyComparison()']
339 ····]],339 ····]],
340 ····['energycomparison_2ecpp_199',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]],340 ····['energycomparison_2ecpp_199',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]],
341 ····['energycomparison_2eh_200',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]],341 ····['energycomparison_2eh_200',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]],
342 ····['energycomparison_5f_201',·['energyComparison_',·['../classgmx_1_1test_1_1PeriodicActionsTest.xhtml#accffb92e7241f0a2b319173bcc6e239a',·1,·'gmx::test::PeriodicActionsTest']]],342 ····['energycomparison_5f_201',·['energyComparison_',·['../classgmx_1_1test_1_1PeriodicActionsTest.xhtml#accffb92e7241f0a2b319173bcc6e239a',·1,·'gmx::test::PeriodicActionsTest']]],
343 ····['energycontribution_202',·['EnergyContribution',·['../namespacegmx.xhtml#a41036212ab3b994374d2c2f02772427c',·1,·'gmx']]],343 ····['energycontribution_202',·['EnergyContribution',·['../namespacegmx.xhtml#a41036212ab3b994374d2c2f02772427c',·1,·'gmx']]],
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344 ····['energydata_203',·['energydata',·['../classgmx_1_1EnergyData.xhtml#a15119585f028d3e0501e51fd4ab690b2',·1,·'gmx::EnergyData::EnergyData()'],345 ········['../classgmx_1_1EnergyData.xhtml#a15119585f028d3e0501e51fd4ab690b2',·1,·'gmx::EnergyData::EnergyData()']
345 ········['../classgmx_1_1EnergyData.xhtml',·1,·'gmx::EnergyData'] 
346 ····]],346 ····]],
347 ····['energydata_20tt_204',·['&lt;tt&gt;EnergyData&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md36',·1,·'']]],347 ····['energydata_20tt_204',·['&lt;tt&gt;EnergyData&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md36',·1,·'']]],
348 ····['energydata_2ecpp_205',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]],348 ····['energydata_2ecpp_205',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]],
349 ····['energydata_2eh_206',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]],349 ····['energydata_2eh_206',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]],
350 ····['energydata_3a_3aelement_20tt_207',·['&lt;tt&gt;EnergyData::Element&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md32',·1,·'']]],350 ····['energydata_3a_3aelement_20tt_207',·['&lt;tt&gt;EnergyData::Element&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md32',·1,·'']]],
351 ····['energydrift_208',·['energyDrift',·['../classgmx_1_1EnergyDriftTracker.xhtml#af7dcf448940396b29c3ffb9e935fee66',·1,·'gmx::EnergyDriftTracker']]],351 ····['energydrift_208',·['energyDrift',·['../classgmx_1_1EnergyDriftTracker.xhtml#af7dcf448940396b29c3ffb9e935fee66',·1,·'gmx::EnergyDriftTracker']]],
352 ····['energydriftstring_209',·['energyDriftString',·['../classgmx_1_1EnergyDriftTracker.xhtml#ae353361ca2765e1c7655c1862fb49723',·1,·'gmx::EnergyDriftTracker']]],352 ····['energydriftstring_209',·['energyDriftString',·['../classgmx_1_1EnergyDriftTracker.xhtml#ae353361ca2765e1c7655c1862fb49723',·1,·'gmx::EnergyDriftTracker']]],
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11 ········['../structNBAtomDataGpu.xhtml#a3a21e6e82ee0d9878dccab62e4bcfba8',·1,·'NBAtomDataGpu::f'], 
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14 ····]],14 ····]],
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17 ····['factorize_3',·['factorize',·['../domdec__setup_8cpp.xhtml#a16e508bed9b154f301b87efa8a1ab1f4',·1,·'domdec_setup.cpp']]],17 ····['factorize_3',·['factorize',·['../domdec__setup_8cpp.xhtml#a16e508bed9b154f301b87efa8a1ab1f4',·1,·'domdec_setup.cpp']]],
18 ····['factorymethod_4',·['FactoryMethod',·['../classgmx_1_1ICommandLineOptionsModule.xhtml#a600f22ce0fca3bca1aaf672395e4778e',·1,·'gmx::ICommandLineOptionsModule']]],18 ····['factorymethod_4',·['FactoryMethod',·['../classgmx_1_1ICommandLineOptionsModule.xhtml#a600f22ce0fca3bca1aaf672395e4778e',·1,·'gmx::ICommandLineOptionsModule']]],
19 ····['fakempiallreduce_5',·['fakeMpiAllReduce',·['../classgmx_1_1test_1_1anonymous__namespace_02observablesreducer_8cpp_03_1_1ObservablesReducerIntegrationTest.xhtml#a9cf04ab11fa748eb8fa5bae03a6e8047',·1,·'gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest']]],19 ····['fakempiallreduce_5',·['fakeMpiAllReduce',·['../classgmx_1_1test_1_1anonymous__namespace_02observablesreducer_8cpp_03_1_1ObservablesReducerIntegrationTest.xhtml#a9cf04ab11fa748eb8fa5bae03a6e8047',·1,·'gmx::test::anonymous_namespace{observablesreducer.cpp}::ObservablesReducerIntegrationTest']]],
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24 ····['fatalerror_2eh_10',·['fatalerror.h',·['../fatalerror_8h.xhtml',·1,·'']]],24 ····['fatalerror_2eh_10',·['fatalerror.h',·['../fatalerror_8h.xhtml',·1,·'']]],
25 ····['fbox_5fdiag_11',·['fbox_diag',·['../structt__pbc.xhtml#a80f61f863ae0f86d1096f317afbf232f',·1,·'t_pbc']]],25 ····['fbox_5fdiag_11',·['fbox_diag',·['../structt__pbc.xhtml#a80f61f863ae0f86d1096f317afbf232f',·1,·'t_pbc']]],
26 ····['fbposres_12',·['fbposres',·['../namespaceanonymous__namespace_02position__restraints_8cpp_03.xhtml#a81050ef61e43e258576d9935238d3b8d',·1,·'anonymous_namespace{position_restraints.cpp}']]],26 ····['fbposres_12',·['fbposres',·['../namespaceanonymous__namespace_02position__restraints_8cpp_03.xhtml#a81050ef61e43e258576d9935238d3b8d',·1,·'anonymous_namespace{position_restraints.cpp}']]],
27 ····['fbposres_5fwrapper_13',·['fbposres_wrapper',·['../position__restraints_8cpp.xhtml#ad1fb8ef8087c4043854b6594915bede6',·1,·'fbposres_wrapper(t_nrnb·*nrnb,·const·InteractionDefinitions·&amp;idef,·const·struct·t_pbc·*pbc,·const·rvec·*x,·gmx_enerdata_t·*enerd,·const·t_forcerec·*fr,·gmx::ForceWithVirial·*forceWithVirial):&#160;position_restraints.cpp'],27 ····['fbposres_5fwrapper_13',·['fbposres_wrapper',·['../position__restraints_8h.xhtml#ad1fb8ef8087c4043854b6594915bede6',·1,·'fbposres_wrapper(t_nrnb·*nrnb,·const·InteractionDefinitions·&amp;idef,·const·struct·t_pbc·*pbc,·const·rvec·*x,·gmx_enerdata_t·*enerd,·const·t_forcerec·*fr,·gmx::ForceWithVirial·*forceWithVirial):&#160;position_restraints.cpp'],
28 ········['../position__restraints_8h.xhtml#ad1fb8ef8087c4043854b6594915bede6',·1,·'fbposres_wrapper(t_nrnb·*nrnb,·const·InteractionDefinitions·&amp;idef,·const·struct·t_pbc·*pbc,·const·rvec·*x,·gmx_enerdata_t·*enerd,·const·t_forcerec·*fr,·gmx::ForceWithVirial·*forceWithVirial):&#160;position_restraints.cpp']28 ········['../position__restraints_8cpp.xhtml#ad1fb8ef8087c4043854b6594915bede6',·1,·'fbposres_wrapper(t_nrnb·*nrnb,·const·InteractionDefinitions·&amp;idef,·const·struct·t_pbc·*pbc,·const·rvec·*x,·gmx_enerdata_t·*enerd,·const·t_forcerec·*fr,·gmx::ForceWithVirial·*forceWithVirial):&#160;position_restraints.cpp']
29 ····]],29 ····]],
30 ····['fc_14',·['fc',·['../structt__oriresdata.xhtml#a3f53eeced8bb470f9e6744c13094cb4a',·1,·'t_oriresdata']]],30 ····['fc_14',·['fc',·['../structt__oriresdata.xhtml#a3f53eeced8bb470f9e6744c13094cb4a',·1,·'t_oriresdata']]],
31 ····['fclose_5fwrapper_15',·['fclose_wrapper',·['../namespacegmx.xhtml#a2d82b9b01f203ad5d99eaa11afb0e2fb',·1,·'gmx']]],31 ····['fclose_5fwrapper_15',·['fclose_wrapper',·['../namespacegmx.xhtml#a2d82b9b01f203ad5d99eaa11afb0e2fb',·1,·'gmx']]],
32 ····['fclosewrapper_16',·['fclosewrapper',·['../namespacegmx_1_1test_1_1anonymous__namespace_02ebin_8cpp_03.xhtml#a254383541735412e65db96fd868c6a31',·1,·'gmx::test::anonymous_namespace{ebin.cpp}::fcloseWrapper()'],32 ····['fclosewrapper_16',·['fclosewrapper',·['../namespacegmx_1_1test_1_1anonymous__namespace_02ebin_8cpp_03.xhtml#a254383541735412e65db96fd868c6a31',·1,·'gmx::test::anonymous_namespace{ebin.cpp}::fcloseWrapper()'],
33 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03.xhtml#a322edc57107adfbd9f0d8c1d838a05a5',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::fcloseWrapper()']33 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03.xhtml#a322edc57107adfbd9f0d8c1d838a05a5',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::fcloseWrapper()']
34 ····]],34 ····]],
35 ····['fcoords_17',·['FCoords',·['../namespacegmx.xhtml#aa72f45c17038ea5aae00ba6b17cab901a3450af452b893d21b872bbf8683b7df8',·1,·'gmx']]],35 ····['fcoords_17',·['FCoords',·['../namespacegmx.xhtml#aa72f45c17038ea5aae00ba6b17cab901a3450af452b893d21b872bbf8683b7df8',·1,·'gmx']]],
Offset 44, 31 lines modifiedOffset 44, 31 lines modified
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45 ····['fep_5fstate_23',·['fep_state',·['../structTpxFileHeader.xhtml#a3e6d181da70f5976a240943c94d74969',·1,·'TpxFileHeader::fep_state'],45 ····['fep_5fstate_23',·['fep_state',·['../structTpxFileHeader.xhtml#a3e6d181da70f5976a240943c94d74969',·1,·'TpxFileHeader::fep_state'],
46 ········['../classt__state.xhtml#a1a50c4a421790dc5a2bec971c4fccca4',·1,·'t_state::fep_state']46 ········['../classt__state.xhtml#a1a50c4a421790dc5a2bec971c4fccca4',·1,·'t_state::fep_state']
47 ····]],47 ····]],
48 ····['fep_5fstate_5fa_24',·['FEP_STATE_A',·['../pme__gpu__internal_8h.xhtml#a6e686cf9fadaac1ce39b08416f7614da',·1,·'pme_gpu_internal.h']]],48 ····['fep_5fstate_5fa_24',·['FEP_STATE_A',·['../pme__gpu__internal_8h.xhtml#a6e686cf9fadaac1ce39b08416f7614da',·1,·'pme_gpu_internal.h']]],
49 ····['fep_5fstate_5fb_25',·['FEP_STATE_B',·['../pme__gpu__internal_8h.xhtml#ae6dd68494c14b66f86ff58a5e0a1aa93',·1,·'pme_gpu_internal.h']]],49 ····['fep_5fstate_5fb_25',·['FEP_STATE_B',·['../pme__gpu__internal_8h.xhtml#ae6dd68494c14b66f86ff58a5e0a1aa93',·1,·'pme_gpu_internal.h']]],
50 ····['fepbits_26',·['fepBits',·['../classNbnxm_1_1Grid.xhtml#aca022470760db2366778f8df87e42279',·1,·'Nbnxm::Grid']]],50 ····['fepbits_26',·['fepBits',·['../classNbnxm_1_1Grid.xhtml#aca022470760db2366778f8df87e42279',·1,·'Nbnxm::Grid']]],
51 ····['fepdimparams_27',·['fepdimparams',·['../structgmx_1_1DimParams_1_1FepDimParams.xhtml',·1,·'gmx::DimParams::FepDimParams'], 
52 ········['../structgmx_1_1DimParams.xhtml#aaddac033528c91ab831c36981ad0bf12',·1,·'gmx::DimParams::fepDimParams()·const']51 ····['fepdimparams_27',·['fepdimparams',·['../structgmx_1_1DimParams.xhtml#aaddac033528c91ab831c36981ad0bf12',·1,·'gmx::DimParams::fepDimParams()·const'],
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53 ····]],53 ····]],
54 ····['feplambdadimparams_28',·['fepLambdaDimParams',·['../structgmx_1_1DimParams.xhtml#a7dc64a12c8e1081550e64f355b5a0682',·1,·'gmx::DimParams']]],54 ····['feplambdadimparams_28',·['fepLambdaDimParams',·['../structgmx_1_1DimParams.xhtml#a7dc64a12c8e1081550e64f355b5a0682',·1,·'gmx::DimParams']]],
55 ····['feplambdastate_29',·['fepLambdaState',·['../classgmx_1_1Awh.xhtml#adfc3a70dde1b72c20abe5688cf98d4ba',·1,·'gmx::Awh']]],55 ····['feplambdastate_29',·['fepLambdaState',·['../classgmx_1_1Awh.xhtml#adfc3a70dde1b72c20abe5688cf98d4ba',·1,·'gmx::Awh']]],
56 ····['feplists_30',·['fepLists',·['../classPairlistSet.xhtml#a8ffe01f1e7b00537e05273e79afd8d7a',·1,·'PairlistSet']]],56 ····['feplists_30',·['fepLists',·['../classPairlistSet.xhtml#a8ffe01f1e7b00537e05273e79afd8d7a',·1,·'PairlistSet']]],
57 ····['fepstatesetting_31',·['FepStateSetting',·['../classgmx_1_1FepStateSetting.xhtml',·1,·'gmx']]],57 ····['fepstatesetting_31',·['FepStateSetting',·['../classgmx_1_1FepStateSetting.xhtml',·1,·'gmx']]],
58 ····['fepstatevalue_32',·['fepstatevalue',·['../structFEPStateValue.xhtml#a638b5206f78383252ae56f4a257fb922',·1,·'FEPStateValue::FEPStateValue()'],58 ····['fepstatevalue_32',·['fepstatevalue',·['../structFEPStateValue.xhtml#a638b5206f78383252ae56f4a257fb922',·1,·'FEPStateValue::FEPStateValue()=default'],
59 ········['../structFEPStateValue.xhtml',·1,·'FEPStateValue&lt;·T·&gt;'],59 ········['../structFEPStateValue.xhtml#ae45c0dca25a0b1b48a68c10767d59483',·1,·'FEPStateValue::FEPStateValue(T·value)'],
60 ········['../structFEPStateValue.xhtml#ad203d2ae99649841dd5ecd72f015167a',·1,·'FEPStateValue::FEPStateValue(T·valueA,·T·valueB)'],60 ········['../structFEPStateValue.xhtml#ad203d2ae99649841dd5ecd72f015167a',·1,·'FEPStateValue::FEPStateValue(T·valueA,·T·valueB)'],
61 ········['../structFEPStateValue.xhtml#ae45c0dca25a0b1b48a68c10767d59483',·1,·'FEPStateValue::FEPStateValue(T·value)']61 ········['../structFEPStateValue.xhtml',·1,·'FEPStateValue&lt;·T·&gt;']
62 ····]],62 ····]],
63 ····['fepstatevalue_3c_20nameholder_20_3e_33',·['FEPStateValue&lt;·NameHolder·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],63 ····['fepstatevalue_3c_20nameholder_20_3e_33',·['FEPStateValue&lt;·NameHolder·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],
64 ····['fepstatevalue_3c_20real_20_3e_34',·['FEPStateValue&lt;·real·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],64 ····['fepstatevalue_3c_20real_20_3e_34',·['FEPStateValue&lt;·real·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],
65 ····['fepstatevalue_3c_20unsigned_20short_20_3e_35',·['FEPStateValue&lt;·unsigned·short·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],65 ····['fepstatevalue_3c_20unsigned_20short_20_3e_35',·['FEPStateValue&lt;·unsigned·short·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],
 66 ····['fetchnextevent_36',·['fetchnextevent',·['../classGpuRegionTimerImpl.xhtml#ace9b9965e5b0dec64d5d74af36035a63',·1,·'GpuRegionTimerImpl::fetchNextEvent()'],
66 ····['fetchnextevent_36',·['fetchnextevent',·['../classGpuRegionTimerWrapper.xhtml#ae595ce381d09845166643647caf6b539',·1,·'GpuRegionTimerWrapper::fetchNextEvent()'],67 ········['../classGpuRegionTimerWrapper.xhtml#ae595ce381d09845166643647caf6b539',·1,·'GpuRegionTimerWrapper::fetchNextEvent()']
67 ········['../classGpuRegionTimerImpl.xhtml#ace9b9965e5b0dec64d5d74af36035a63',·1,·'GpuRegionTimerImpl::fetchNextEvent()'] 
68 ····]],68 ····]],
69 ····['ffallow_5fmissing_37',·['ffALLOW_MISSING',·['../group__module__commandline.xhtml#gaae8f2f42809cc00c087b4359507abb81',·1,·'filenm.h']]],69 ····['ffallow_5fmissing_37',·['ffALLOW_MISSING',·['../group__module__commandline.xhtml#gaae8f2f42809cc00c087b4359507abb81',·1,·'filenm.h']]],
70 ····['fflib_38',·['ffLIB',·['../group__module__commandline.xhtml#gabcfe164407bc1fff8164f4779f0fe3ce',·1,·'filenm.h']]],70 ····['fflib_38',·['ffLIB',·['../group__module__commandline.xhtml#gabcfe164407bc1fff8164f4779f0fe3ce',·1,·'filenm.h']]],
71 ····['ffliboptrd_39',·['ffLIBOPTRD',·['../group__module__commandline.xhtml#gaa168a891bb48ca53f62f04697add97f4',·1,·'filenm.h']]],71 ····['ffliboptrd_39',·['ffLIBOPTRD',·['../group__module__commandline.xhtml#gaa168a891bb48ca53f62f04697add97f4',·1,·'filenm.h']]],
72 ····['fflibrd_40',·['ffLIBRD',·['../group__module__commandline.xhtml#ga70443d67e488b39409b37d98b9d2f8b8',·1,·'filenm.h']]],72 ····['fflibrd_40',·['ffLIBRD',·['../group__module__commandline.xhtml#ga70443d67e488b39409b37d98b9d2f8b8',·1,·'filenm.h']]],
73 ····['ffmult_41',·['ffMULT',·['../group__module__commandline.xhtml#ga50cb2de9aec8429fb44074a1bfdb19b2',·1,·'filenm.h']]],73 ····['ffmult_41',·['ffMULT',·['../group__module__commandline.xhtml#ga50cb2de9aec8429fb44074a1bfdb19b2',·1,·'filenm.h']]],
74 ····['ffopt_42',·['ffOPT',·['../group__module__commandline.xhtml#ga070f4190c2bc4a6af08333851ddf42ac',·1,·'filenm.h']]],74 ····['ffopt_42',·['ffOPT',·['../group__module__commandline.xhtml#ga070f4190c2bc4a6af08333851ddf42ac',·1,·'filenm.h']]],
Offset 88, 69 lines modifiedOffset 88, 69 lines modified
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89 ····['fftdirection_57',·['FftDirection',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03.xhtml#a189bb9a27ad84c1c5ba745b4611b07a9',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]],89 ····['fftdirection_57',·['FftDirection',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03.xhtml#a189bb9a27ad84c1c5ba745b4611b07a9',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]],
90 ····['fftsetup_58',·['fftSetup',·['../structPmeGpuSpecific.xhtml#aad82d2b99a94ed427226076d786a5886',·1,·'PmeGpuSpecific']]],90 ····['fftsetup_58',·['fftSetup',·['../structPmeGpuSpecific.xhtml#aad82d2b99a94ed427226076d786a5886',·1,·'PmeGpuSpecific']]],
91 ····['ffwrite_59',·['ffWRITE',·['../group__module__commandline.xhtml#ga7631b25f5be9959c84dd7acc96bc04dd',·1,·'filenm.h']]],91 ····['ffwrite_59',·['ffWRITE',·['../group__module__commandline.xhtml#ga7631b25f5be9959c84dd7acc96bc04dd',·1,·'filenm.h']]],
92 ····['ffwrmult_60',·['ffWRMULT',·['../group__module__commandline.xhtml#ga0a9ba9e80fcdc4a36537189bf0b2e092',·1,·'filenm.h']]],92 ····['ffwrmult_60',·['ffWRMULT',·['../group__module__commandline.xhtml#ga0a9ba9e80fcdc4a36537189bf0b2e092',·1,·'filenm.h']]],
93 ····['fgets2_61',·['fgets2',·['../cstringutil_8h.xhtml#a1fcfed3fad308bcf16440a6712bf3bb6',·1,·'cstringutil.cpp']]],93 ····['fgets2_61',·['fgets2',·['../cstringutil_8h.xhtml#a1fcfed3fad308bcf16440a6712bf3bb6',·1,·'cstringutil.cpp']]],
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95 ····['file_63',·['file',·['../structgmx_1_1ThrowLocation.xhtml#a8346a1ead40423ed29d2f2786ad80a80',·1,·'gmx::ThrowLocation::file'], 
96 ········['../namespacegmx_1_1test.xhtml#a5b76a571a22b4c47f7dab283e6674154a0b27918290ff5323bea1e3b78a9cf04e',·1,·'gmx::test::File']95 ····['file_63',·['file',·['../namespacegmx_1_1test.xhtml#a5b76a571a22b4c47f7dab283e6674154a0b27918290ff5323bea1e3b78a9cf04e',·1,·'gmx::test::File'],
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100 ····['file_5fversion_66',·['file_version',·['../structCheckpointHeaderContents.xhtml#aa30be23ce197759be9ace7e076d116bf',·1,·'CheckpointHeaderContents']]],100 ····['file_5fversion_66',·['file_version',·['../structCheckpointHeaderContents.xhtml#aa30be23ce197759be9ace7e076d116bf',·1,·'CheckpointHeaderContents']]],
101 ····['filebase_67',·['filebase',·['../structPreprocessResidue.xhtml#ae814d77fe9dc87042f21aacc06cadbcf',·1,·'PreprocessResidue::filebase'],101 ····['filebase_67',·['filebase',·['../structPreprocessResidue.xhtml#ae814d77fe9dc87042f21aacc06cadbcf',·1,·'PreprocessResidue::filebase'],
102 ········['../structMoleculePatchDatabase.xhtml#ae19967539edd91c420f87eb820136971',·1,·'MoleculePatchDatabase::filebase']102 ········['../structMoleculePatchDatabase.xhtml#ae19967539edd91c420f87eb820136971',·1,·'MoleculePatchDatabase::filebase']
103 ····]],103 ····]],
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105 ········['../classgmx_1_1IFileInputRedirector.xhtml#ada681906817a3597190bc682ebd3dfe0',·1,·'gmx::IFileInputRedirector::fileExists()'], 
106 ········['../classgmx_1_1test_1_1TestFileInputRedirector.xhtml#a0e57297bb9ca78465d3d1fab981edc52',·1,·'gmx::test::TestFileInputRedirector::fileExists()']105 ········['../classgmx_1_1test_1_1TestFileInputRedirector.xhtml#a0e57297bb9ca78465d3d1fab981edc52',·1,·'gmx::test::TestFileInputRedirector::fileExists()'],
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109 ····['fileindex_70',·['fileIndex',·['../classgmx_1_1EnergyTerm.xhtml#ab4c81c07ccaef47d2bcf6dcee4b921ac',·1,·'gmx::EnergyTerm']]],109 ····['fileindex_70',·['fileIndex',·['../classgmx_1_1EnergyTerm.xhtml#ab4c81c07ccaef47d2bcf6dcee4b921ac',·1,·'gmx::EnergyTerm']]],
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111 ········['../classgmx_1_1FileIOError.xhtml#a24a714cd22c57b8cb91fa2c5f37fafe9',·1,·'gmx::FileIOError::FileIOError()']110 ····['fileioerror_71',·['fileioerror',·['../classgmx_1_1FileIOError.xhtml#a24a714cd22c57b8cb91fa2c5f37fafe9',·1,·'gmx::FileIOError::FileIOError()'],
 111 ········['../classgmx_1_1FileIOError.xhtml',·1,·'gmx::FileIOError']
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 114 ········['../classgmx_1_1FileIOXdrSerializer.xhtml',·1,·'gmx::FileIOXdrSerializer']
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117 ····['filemanager_74',·['fileManager',·['../classgmx_1_1test_1_1CommandLineTestBase.xhtml#a5899f9f12453f75da2a4af840a1c4b59',·1,·'gmx::test::CommandLineTestBase']]],117 ····['filemanager_74',·['fileManager',·['../classgmx_1_1test_1_1CommandLineTestBase.xhtml#a5899f9f12453f75da2a4af840a1c4b59',·1,·'gmx::test::CommandLineTestBase']]],
118 ····['filemanager_5f_75',·['filemanager_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a6739c595dc4466b69220fdf1dfbe3d71',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest::fileManager_'],118 ····['filemanager_5f_75',·['filemanager_',·['../classgmx_1_1test_1_1MultiSimTest.xhtml#a00ccab41b824db52825528838326ae91',·1,·'gmx::test::MultiSimTest::fileManager_'],
119 ········['../classgmx_1_1test_1_1MdrunTestFixture.xhtml#a2141d1eeae99b891fdd4aabc9de3dccb',·1,·'gmx::test::MdrunTestFixture::fileManager_'],119 ········['../classgmx_1_1test_1_1MdrunTestFixture.xhtml#a2141d1eeae99b891fdd4aabc9de3dccb',·1,·'gmx::test::MdrunTestFixture::fileManager_'],
120 ········['../classgmx_1_1test_1_1MultiSimTest.xhtml#a00ccab41b824db52825528838326ae91',·1,·'gmx::test::MultiSimTest::fileManager_']120 ········['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a6739c595dc4466b69220fdf1dfbe3d71',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest::fileManager_']
121 ····]],121 ····]],
122 ····['filematcherpointer_76',·['FileMatcherPointer',·['../namespacegmx_1_1test.xhtml#a96729fee4a52b37c0ae0784af1e9eaa3',·1,·'gmx::test']]],122 ····['filematcherpointer_76',·['FileMatcherPointer',·['../namespacegmx_1_1test.xhtml#a96729fee4a52b37c0ae0784af1e9eaa3',·1,·'gmx::test']]],
123 ····['filematchers_2ecpp_77',·['filematchers.cpp',·['../filematchers_8cpp.xhtml',·1,·'']]],123 ····['filematchers_2ecpp_77',·['filematchers.cpp',·['../filematchers_8cpp.xhtml',·1,·'']]],
124 ····['filematchers_2eh_78',·['filematchers.h',·['../filematchers_8h.xhtml',·1,·'']]],124 ····['filematchers_2eh_78',·['filematchers.h',·['../filematchers_8h.xhtml',·1,·'']]],
125 ····['filemd5_2ecpp_79',·['filemd5.cpp',·['../filemd5_8cpp.xhtml',·1,·'']]],125 ····['filemd5_2ecpp_79',·['filemd5.cpp',·['../filemd5_8cpp.xhtml',·1,·'']]],
126 ····['filename_80',·['filename',·['../structgmx_1_1test_1_1anonymous__namespace_02extract__cluster_8cpp_03_1_1ManualOutputFile.xhtml#a7277965d1f059e01d997e98b270af2bb',·1,·'gmx::test::anonymous_namespace{extract_cluster.cpp}::ManualOutputFile']]],126 ····['filename_80',·['filename',·['../structgmx_1_1test_1_1anonymous__namespace_02extract__cluster_8cpp_03_1_1ManualOutputFile.xhtml#a7277965d1f059e01d997e98b270af2bb',·1,·'gmx::test::anonymous_namespace{extract_cluster.cpp}::ManualOutputFile']]],
127 ····['filenamelist_81',·['FileNameList',·['../classgmx_1_1test_1_1TestFileManager_1_1Impl.xhtml#a00100912857556c2a0467cd7e0591282',·1,·'gmx::test::TestFileManager::Impl']]],127 ····['filenamelist_81',·['FileNameList',·['../classgmx_1_1test_1_1TestFileManager_1_1Impl.xhtml#a00100912857556c2a0467cd7e0591282',·1,·'gmx::test::TestFileManager::Impl']]],
 128 ····['filenameoption_82',·['filenameoption',·['../classgmx_1_1FileNameOption.xhtml',·1,·'gmx::FileNameOption'],
128 ····['filenameoption_82',·['filenameoption',·['../classgmx_1_1FileNameOption.xhtml#a4057766b5851a4d02b3913f1984b3891',·1,·'gmx::FileNameOption::FileNameOption()'],129 ········['../classgmx_1_1FileNameOption.xhtml#a4057766b5851a4d02b3913f1984b3891',·1,·'gmx::FileNameOption::FileNameOption()']
129 ········['../classgmx_1_1FileNameOption.xhtml',·1,·'gmx::FileNameOption'] 
130 ····]],130 ····]],
131 ····['filenameoption_2ecpp_83',·['filenameoption.cpp',·['../tests_2filenameoption_8cpp.xhtml',·1,·'(Global·Namespace)'],131 ····['filenameoption_2ecpp_83',·['filenameoption.cpp',·['../tests_2filenameoption_8cpp.xhtml',·1,·'(Global·Namespace)'],
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133 ····['generatediagonalmasks_73',·['generateDiagonalMasks',·['../namespacegmx.xhtml#a75902569a0fdfb00cfa10f4d063eed7d',·1,·'gmx']]],133 ····['generatediagonalmasks_73',·['generateDiagonalMasks',·['../namespacegmx.xhtml#a75902569a0fdfb00cfa10f4d063eed7d',·1,·'gmx']]],
134 ····['generateewaldcorrectiontables_74',·['generateEwaldCorrectionTables',·['../forcetable_8h.xhtml#a09f7b6c414c61fe59569916d4106beb2',·1,·'forcetable.cpp']]],134 ····['generateewaldcorrectiontables_74',·['generateEwaldCorrectionTables',·['../forcetable_8h.xhtml#a09f7b6c414c61fe59569916d4106beb2',·1,·'forcetable.cpp']]],
135 ····['generic_75',·['Generic',·['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0ca8045a0a6c688b0635e3caccc408a1446',·1,·'gmx']]],135 ····['generic_75',·['Generic',·['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0ca8045a0a6c688b0635e3caccc408a1446',·1,·'gmx']]],
136 ····['genion_2ecpp_76',·['genion.cpp',·['../tests_2genion_8cpp.xhtml',·1,·'']]],136 ····['genion_2ecpp_76',·['genion.cpp',·['../tests_2genion_8cpp.xhtml',·1,·'']]],
137 ····['genqmmmindices_77',·['genQmmmIndices',·['../src_2gromacs_2mimic_2utilities_8h.xhtml#ac8c92f4d2b6d6276c25ae95682de13aa',·1,·'utilities.cpp']]],137 ····['genqmmmindices_77',·['genQmmmIndices',·['../src_2gromacs_2mimic_2utilities_8h.xhtml#ac8c92f4d2b6d6276c25ae95682de13aa',·1,·'utilities.cpp']]],
138 ····['genrestr_2ecpp_78',·['genrestr.cpp',·['../tests_2genrestr_8cpp.xhtml',·1,·'']]],138 ····['genrestr_2ecpp_78',·['genrestr.cpp',·['../tests_2genrestr_8cpp.xhtml',·1,·'']]],
139 ····['geometric_79',·['Geometric',·['../atomdata_8h.xhtml#a545339c6bb2aa8f6195b8ac73569cbf8aadf9f772a73f364e4ce6c52b9fae740d',·1,·'atomdata.h']]],139 ····['geometric_79',·['Geometric',·['../atomdata_8h.xhtml#a545339c6bb2aa8f6195b8ac73569cbf8aadf9f772a73f364e4ce6c52b9fae740d',·1,·'atomdata.h']]],
 140 ····['geometry_80',·['geometry',·['../structNbnxm_1_1Grid_1_1Geometry.xhtml',·1,·'Nbnxm::Grid::Geometry'],
140 ····['geometry_80',·['geometry',·['../structNbnxm_1_1Grid_1_1Geometry.xhtml#a8d9a96a8fdb5462123ab8b2a872d2010',·1,·'Nbnxm::Grid::Geometry::Geometry()'],141 ········['../structNbnxm_1_1Grid_1_1Geometry.xhtml#a8d9a96a8fdb5462123ab8b2a872d2010',·1,·'Nbnxm::Grid::Geometry::Geometry()'],
141 ········['../structt__pullcoord.xhtml#ab8bb3edab80d37b6b59871a5687f3957',·1,·'t_pullcoord::geometry'],142 ········['../structt__pullcoord.xhtml#ab8bb3edab80d37b6b59871a5687f3957',·1,·'t_pullcoord::geometry'],
142 ········['../classNbnxm_1_1Grid.xhtml#a6fa53ffa6e33e4a900ff246131cc0972',·1,·'Nbnxm::Grid::geometry()·const'],143 ········['../classNbnxm_1_1Grid.xhtml#a6fa53ffa6e33e4a900ff246131cc0972',·1,·'Nbnxm::Grid::geometry()']
143 ········['../structNbnxm_1_1Grid_1_1Geometry.xhtml',·1,·'Nbnxm::Grid::Geometry'] 
144 ····]],144 ····]],
145 ····['get_81',·['get',·['../parser__internal_8h.xhtml#a0c1fffb107955e3a6c98e6a8d44bc66b',·1,·'get():&#160;parser_internal.h'], 
146 ········['../classgmx_1_1GlobalCommandLineHelpContext.xhtml#aaea9dd06988d683d99e633f946d7ad6e',·1,·'gmx::GlobalCommandLineHelpContext::get()'],145 ····['get_81',·['get',·['../classgmx_1_1GlobalCommandLineHelpContext.xhtml#aaea9dd06988d683d99e633f946d7ad6e',·1,·'gmx::GlobalCommandLineHelpContext::get()'],
147 ········['../classgmx_1_1compat_1_1not__null.xhtml#a71e17ffb21e59c1bd4317025e353e85d',·1,·'gmx::compat::not_null::get()'],146 ········['../classgmx_1_1compat_1_1not__null.xhtml#a71e17ffb21e59c1bd4317025e353e85d',·1,·'gmx::compat::not_null::get()'],
148 ········['../classgmx_1_1SimulationInputHandle.xhtml#a9a5f2eeb74fc6dd0cad1ab613c5ffe55',·1,·'gmx::SimulationInputHandle::get()'],147 ········['../classgmx_1_1SimulationInputHandle.xhtml#a9a5f2eeb74fc6dd0cad1ab613c5ffe55',·1,·'gmx::SimulationInputHandle::get()'],
149 ········['../classgmx_1_1OptionManagerContainer.xhtml#aa4ccc4fe6ad95d34d0ac3ad64c99f3dd',·1,·'gmx::OptionManagerContainer::get()']148 ········['../classgmx_1_1OptionManagerContainer.xhtml#aa4ccc4fe6ad95d34d0ac3ad64c99f3dd',·1,·'gmx::OptionManagerContainer::get()'],
 149 ········['../parser__internal_8h.xhtml#a0c1fffb107955e3a6c98e6a8d44bc66b',·1,·'get(ValueType·*src):&#160;parser_internal.h']
150 ····]],150 ····]],
151 ····['get_5f2log_82',·['get_2log',·['../nbnxm__geometry_8h.xhtml#a8395e4ac753290707b9f0089b712c287',·1,·'nbnxm_geometry.h']]],151 ····['get_5f2log_82',·['get_2log',·['../nbnxm__geometry_8h.xhtml#a8395e4ac753290707b9f0089b712c287',·1,·'nbnxm_geometry.h']]],
152 ····['get_5fa_5fline_83',·['get_a_line',·['../strdb_8h.xhtml#a0cd472153523204686e891341870765e',·1,·'strdb.cpp']]],152 ····['get_5fa_5fline_83',·['get_a_line',·['../strdb_8h.xhtml#a0cd472153523204686e891341870765e',·1,·'strdb.cpp']]],
153 ····['get_5facffitfn_84',·['get_acffitfn',·['../autocorr_8cpp.xhtml#ae8203eca8a282a6a6c3193eb7434e740',·1,·'get_acffitfn():&#160;autocorr.cpp'],153 ····['get_5facffitfn_84',·['get_acffitfn',·['../autocorr_8h.xhtml#ae8203eca8a282a6a6c3193eb7434e740',·1,·'get_acffitfn():&#160;autocorr.cpp'],
154 ········['../autocorr_8h.xhtml#ae8203eca8a282a6a6c3193eb7434e740',·1,·'get_acffitfn():&#160;autocorr.cpp']154 ········['../autocorr_8cpp.xhtml#ae8203eca8a282a6a6c3193eb7434e740',·1,·'get_acffitfn():&#160;autocorr.cpp']
155 ····]],155 ····]],
156 ····['get_5facfnout_85',·['get_acfnout',·['../autocorr_8h.xhtml#a6ffe718811a1de496d0d03c2110907ca',·1,·'get_acfnout():&#160;autocorr.cpp'],156 ····['get_5facfnout_85',·['get_acfnout',·['../autocorr_8h.xhtml#a6ffe718811a1de496d0d03c2110907ca',·1,·'get_acfnout():&#160;autocorr.cpp'],
157 ········['../autocorr_8cpp.xhtml#a6ffe718811a1de496d0d03c2110907ca',·1,·'get_acfnout():&#160;autocorr.cpp']157 ········['../autocorr_8cpp.xhtml#a6ffe718811a1de496d0d03c2110907ca',·1,·'get_acfnout():&#160;autocorr.cpp']
158 ····]],158 ····]],
159 ····['get_5fallocator_86',·['get_allocator',·['../classgmx_1_1PaddedVector.xhtml#a0bae42a82df682e19ac61bc89a6a022a',·1,·'gmx::PaddedVector']]],159 ····['get_5fallocator_86',·['get_allocator',·['../classgmx_1_1PaddedVector.xhtml#a0bae42a82df682e19ac61bc89a6a022a',·1,·'gmx::PaddedVector']]],
160 ····['get_5fcenter_87',·['get_center',·['../groupcoord_8h.xhtml#ac732a95420f31b9a44c7a4abfc371357',·1,·'groupcoord.cpp']]],160 ····['get_5fcenter_87',·['get_center',·['../groupcoord_8h.xhtml#ac732a95420f31b9a44c7a4abfc371357',·1,·'groupcoord.cpp']]],
161 ····['get_5fcenter_5fcomm_88',·['get_center_comm',·['../groupcoord_8h.xhtml#a2018383475eefe6a12a0f43a4bf12741',·1,·'groupcoord.cpp']]],161 ····['get_5fcenter_5fcomm_88',·['get_center_comm',·['../groupcoord_8h.xhtml#a2018383475eefe6a12a0f43a4bf12741',·1,·'groupcoord.cpp']]],
Offset 169, 26 lines modifiedOffset 169, 26 lines modified
169 ····['get_5fheader_94',·['get_header',·['../strdb_8h.xhtml#ae5fc76eb98da3f1abcb12cc2b8e3ae99',·1,·'strdb.h']]],169 ····['get_5fheader_94',·['get_header',·['../strdb_8h.xhtml#ae5fc76eb98da3f1abcb12cc2b8e3ae99',·1,·'strdb.h']]],
170 ····['get_5findex_5fof_5fdistant_5fatom_95',·['get_index_of_distant_atom',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#aee789cd0e8c00d7ea9bbc4ca285cb993',·1,·'swapcoords.cpp']]],170 ····['get_5findex_5fof_5fdistant_5fatom_95',·['get_index_of_distant_atom',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#aee789cd0e8c00d7ea9bbc4ca285cb993',·1,·'swapcoords.cpp']]],
171 ····['get_5finitial_5fioncounts_96',·['get_initial_ioncounts',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a2ba5c82e0b901b0d2bc8190f9fb1d1bb',·1,·'swapcoords.cpp']]],171 ····['get_5finitial_5fioncounts_96',·['get_initial_ioncounts',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a2ba5c82e0b901b0d2bc8190f9fb1d1bb',·1,·'swapcoords.cpp']]],
172 ····['get_5finitial_5fioncounts_5ffrom_5fcpt_97',·['get_initial_ioncounts_from_cpt',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a63688a2d96a14be60358babedf842922',·1,·'swapcoords.cpp']]],172 ····['get_5finitial_5fioncounts_5ffrom_5fcpt_97',·['get_initial_ioncounts_from_cpt',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a63688a2d96a14be60358babedf842922',·1,·'swapcoords.cpp']]],
173 ····['get_5flines_98',·['get_lines',·['../strdb_8h.xhtml#a2884ae147bf969857d0440177a5ea006',·1,·'strdb.cpp']]],173 ····['get_5flines_98',·['get_lines',·['../strdb_8h.xhtml#a2884ae147bf969857d0440177a5ea006',·1,·'strdb.cpp']]],
174 ····['get_5fload_5fdistribution_99',·['get_load_distribution',·['../partition_8cpp.xhtml#ae1715b06b973f0a5bb1f6a5d66326008',·1,·'partition.cpp']]],174 ····['get_5fload_5fdistribution_99',·['get_load_distribution',·['../partition_8cpp.xhtml#ae1715b06b973f0a5bb1f6a5d66326008',·1,·'partition.cpp']]],
175 ····['get_5fmolecule_5fcenter_100',·['get_molecule_center',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#af701b0cff97e0453bc279d86d0ba0673',·1,·'swapcoords.cpp']]],175 ····['get_5fmolecule_5fcenter_100',·['get_molecule_center',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#af701b0cff97e0453bc279d86d0ba0673',·1,·'swapcoords.cpp']]],
176 ····['get_5fnthreads_5fmpi_101',·['get_nthreads_mpi',·['../resourcedivision_8h.xhtml#a66226e873ab77ec209707cc33ad9870c',·1,·'get_nthreads_mpi(const·gmx_hw_info_t·*hwinfo,·gmx_hw_opt_t·*hw_opt,·int·numDevicesToUse,·bool·nonbondedOnGpu,·bool·pmeOnGpu,·const·t_inputrec·*inputrec,·const·gmx_mtop_t·&amp;mtop,·const·gmx::MDLogger·&amp;mdlog,·bool·doMembed):&#160;resourcedivision.cpp'], 
177 ········['../resourcedivision_8cpp.xhtml#a6469a412f67d5ae5b8dddad1b49c1760',·1,·'get_nthreads_mpi(const·gmx_hw_info_t·*hwinfo,·gmx_hw_opt_t·*hw_opt,·const·int·numDevicesToUse,·bool·nonbondedOnGpu,·bool·pmeOnGpu,·const·t_inputrec·*inputrec,·const·gmx_mtop_t·&am[·...·truncated·by·diffoscope;·len:·83,·SHA:·d45e9fdecad1ee41ddef1bb6c833ca7c6b05c4672768e12b7346965e12400b8e·...·]176 ····['get_5fnthreads_5fmpi_101',·['get_nthreads_mpi',·['../resourcedivision_8cpp.xhtml#a6469a412f67d5ae5b8dddad1b49c1760',·1,·'get_nthreads_mpi(const·gmx_hw_info_t·*hwinfo,·gmx_hw_opt_t·*hw_opt,·const·int·numDevicesToUse,·bool·nonbondedOnGpu,·bool·pmeOnGpu,·co[·...·truncated·by·diffoscope;·len:·130,·SHA:·e06d2fa40159e9fab554ccd68b4c060ee7e9c8acce9939d12742e24a2b04d3e8·...·]
 177 ········['../resourcedivision_8h.xhtml#a66226e873ab77ec209707cc33ad9870c',·1,·'get_nthreads_mpi(const·gmx_hw_info_t·*hwinfo,·gmx_hw_opt_t·*hw_opt,·int·numDevicesToUse,·bool·nonbondedOnGpu,·bool·pmeOnGpu,·const·t_inputrec·*inputrec,·const·gmx_mtop_t·&amp;mtop,·const·gmx::MDLogger·&amp;mdlog,·bool·doMembed):&#160;resourcedivision.cpp']
178 ····]],178 ····]],
179 ····['get_5fpme_5fddranks_102',·['get_pme_ddranks',·['../domdec_8h.xhtml#a714c31f22cc831f99d57429e1318a98b',·1,·'domdec.cpp']]],179 ····['get_5fpme_5fddranks_102',·['get_pme_ddranks',·['../domdec_8h.xhtml#a714c31f22cc831f99d57429e1318a98b',·1,·'domdec.cpp']]],
180 ····['get_5fpull_5fcoord_5fperiod_103',·['get_pull_coord_period',·['../namespacegmx.xhtml#a3fbbd26eeea7fa3fe68cec28833d769a',·1,·'gmx']]],180 ····['get_5fpull_5fcoord_5fperiod_103',·['get_pull_coord_period',·['../namespacegmx.xhtml#a3fbbd26eeea7fa3fe68cec28833d769a',·1,·'gmx']]],
181 ····['get_5fpull_5fcoord_5fvalue_104',·['get_pull_coord_value',·['../pull_8h.xhtml#a14d101ec0687b9a06ab451974cb11565',·1,·'get_pull_coord_value(pull_t·*pull,·int·coordIndex,·const·t_pbc·&amp;pbc):&#160;pull.cpp'],181 ····['get_5fpull_5fcoord_5fvalue_104',·['get_pull_coord_value',·['../pull_8h.xhtml#a14d101ec0687b9a06ab451974cb11565',·1,·'get_pull_coord_value(pull_t·*pull,·int·coordIndex,·const·t_pbc·&amp;pbc):&#160;pull.cpp'],
182 ········['../pull_8h.xhtml#a61e53982ac9cc752ddb8f7128a614fb7',·1,·'get_pull_coord_value(pull_t·*pull,·int·coordIndex,·const·t_pbc·&amp;pbc,·double·t):&#160;pull.cpp']182 ········['../pull_8h.xhtml#a61e53982ac9cc752ddb8f7128a614fb7',·1,·'get_pull_coord_value(pull_t·*pull,·int·coordIndex,·const·t_pbc·&amp;pbc,·double·t):&#160;pull.cpp']
183 ····]],183 ····]],
184 ····['get_5fstate_5ff_5fnorm_5fmax_105',·['get_state_f_norm_max',·['../gromacs_2mdrun_2minimize_8cpp.xhtml#a23699473bd2831abaa740414edb895df',·1,·'minimize.cpp']]],184 ····['get_5fstate_5ff_5fnorm_5fmax_105',·['get_state_f_norm_max',·['../gromacs_2mdrun_2minimize_8cpp.xhtml#a23699473bd2831abaa740414edb895df',·1,·'minimize.cpp']]],
185 ····['get_5fsum_5fof_5fpositions_106',·['get_sum_of_positions',·['../groupcoord_8h.xhtml#a5dd8cc38de6142734f8f7ea30a75d192',·1,·'groupcoord.cpp']]],185 ····['get_5fsum_5fof_5fpositions_106',·['get_sum_of_positions',·['../groupcoord_8h.xhtml#a5dd8cc38de6142734f8f7ea30a75d192',·1,·'groupcoord.cpp']]],
186 ····['get_5fsymtab_5fhandle_107',·['get_symtab_handle',·['../symtab_8h.xhtml#a8a1d044b280872eae269d4482a4f9c25',·1,·'get_symtab_handle(t_symtab·*symtab,·int·index):&#160;symtab.cpp'],186 ····['get_5fsymtab_5fhandle_107',·['get_symtab_handle',·['../symtab_8cpp.xhtml#a93dd26914c3871561eeee41a50634a9e',·1,·'get_symtab_handle(t_symtab·*symtab,·int·name):&#160;symtab.cpp'],
187 ········['../symtab_8cpp.xhtml#a93dd26914c3871561eeee41a50634a9e',·1,·'get_symtab_handle(t_symtab·*symtab,·int·name):&#160;symtab.cpp']187 ········['../symtab_8h.xhtml#a8a1d044b280872eae269d4482a4f9c25',·1,·'get_symtab_handle(t_symtab·*symtab,·int·index):&#160;symtab.cpp']
188 ····]],188 ····]],
189 ····['get_5ftmpi_5fomp_5fthread_5fdivision_108',·['get_tmpi_omp_thread_division',·['../resourcedivision_8cpp.xhtml#aeaaeaf817243af7a71a9d73bf0003d89',·1,·'resourcedivision.cpp']]],189 ····['get_5ftmpi_5fomp_5fthread_5fdivision_108',·['get_tmpi_omp_thread_division',·['../resourcedivision_8cpp.xhtml#aeaaeaf817243af7a71a9d73bf0003d89',·1,·'resourcedivision.cpp']]],
190 ····['get_5fzone_5fpulse_5fgroups_109',·['get_zone_pulse_groups',·['../partition_8cpp.xhtml#a06a53f0dd4d8e35e2626e157095a1f9f',·1,·'partition.cpp']]],190 ····['get_5fzone_5fpulse_5fgroups_109',·['get_zone_pulse_groups',·['../partition_8cpp.xhtml#a06a53f0dd4d8e35e2626e157095a1f9f',·1,·'partition.cpp']]],
191 ····['getadapters_110',·['getAdapters',·['../classgmx_1_1OutputAdapterContainer.xhtml#a2b47d075acb351480698317588de9973',·1,·'gmx::OutputAdapterContainer']]],191 ····['getadapters_110',·['getAdapters',·['../classgmx_1_1OutputAdapterContainer.xhtml#a2b47d075acb351480698317588de9973',·1,·'gmx::OutputAdapterContainer']]],
192 ····['getandersenrandomizegroup_111',·['getAndersenRandomizeGroup',·['../classgmx_1_1Update.xhtml#abf212e8923e69307e50782802c65aa3d',·1,·'gmx::Update']]],192 ····['getandersenrandomizegroup_111',·['getAndersenRandomizeGroup',·['../classgmx_1_1Update.xhtml#abf212e8923e69307e50782802c65aa3d',·1,·'gmx::Update']]],
193 ····['getangleindices_112',·['getAngleIndices',·['../namespacegmx.xhtml#a3ba035f8e8a15443a11a30d74eb001e4',·1,·'gmx']]],193 ····['getangleindices_112',·['getAngleIndices',·['../namespacegmx.xhtml#a3ba035f8e8a15443a11a30d74eb001e4',·1,·'gmx']]],
194 ····['getatomcount_113',·['getAtomCount',·['../classgmx_1_1ITopologyProvider.xhtml#a81d60993ea70526c014ff8d2ba99e197',·1,·'gmx::ITopologyProvider']]],194 ····['getatomcount_113',·['getAtomCount',·['../classgmx_1_1ITopologyProvider.xhtml#a81d60993ea70526c014ff8d2ba99e197',·1,·'gmx::ITopologyProvider']]],
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1415 ····['gnth_5fpme_996',·['gnth_pme',·['../structomp__module__nthreads__t.xhtml#a84a7847560c9b6b7d7ce57935e587f1e',·1,·'omp_module_nthreads_t']]],1415 ····['gnth_5fpme_996',·['gnth_pme',·['../structomp__module__nthreads__t.xhtml#a84a7847560c9b6b7d7ce57935e587f1e',·1,·'omp_module_nthreads_t']]],
1416 ····['go_997',·['Go',·['../namespacegmx.xhtml#aa72f45c17038ea5aae00ba6b17cab901a5f075ae3e1f9d0382bb8c4632991f96f',·1,·'gmx']]],1416 ····['go_997',·['Go',·['../namespacegmx.xhtml#aa72f45c17038ea5aae00ba6b17cab901a5f075ae3e1f9d0382bb8c4632991f96f',·1,·'gmx']]],
1417 ····['gpp_5fatomtype_2ecpp_998',·['gpp_atomtype.cpp',·['../tests_2gpp__atomtype_8cpp.xhtml',·1,·'']]],1417 ····['gpp_5fatomtype_2ecpp_998',·['gpp_atomtype.cpp',·['../tests_2gpp__atomtype_8cpp.xhtml',·1,·'']]],
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1419 ····['gpp_5fbond_5fatomtype_2ecpp_1000',·['gpp_bond_atomtype.cpp',·['../tests_2gpp__bond__atomtype_8cpp.xhtml',·1,·'']]],1419 ····['gpp_5fbond_5fatomtype_2ecpp_1000',·['gpp_bond_atomtype.cpp',·['../tests_2gpp__bond__atomtype_8cpp.xhtml',·1,·'']]],
1420 ····['gpp_5fbond_5fatomtype_2eh_1001',·['gpp_bond_atomtype.h',·['../gpp__bond__atomtype_8h.xhtml',·1,·'']]],1420 ····['gpp_5fbond_5fatomtype_2eh_1001',·['gpp_bond_atomtype.h',·['../gpp__bond__atomtype_8h.xhtml',·1,·'']]],
1421 ····['gpu_1002',·['gpu',·['../namespacegmx_1_1test.xhtml#a12502ff6638f23aeff85ad081f6a0a1ca52f9ec21735243ad9917cda3ca077d32',·1,·'gmx::test::GPU'], 
1422 ········['../clusterdistancekerneltype_8h.xhtml#a6d74049ae6c72289649a7de671a92068a3432ca64f06615abf07ab44c10cada38',·1,·'Gpu:&#160;clusterdistancekerneltype.h'],1421 ····['gpu_1002',·['gpu',·['../clusterdistancekerneltype_8h.xhtml#a6d74049ae6c72289649a7de671a92068a3432ca64f06615abf07ab44c10cada38',·1,·'Gpu:&#160;clusterdistancekerneltype.h'],
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1423 ········['../pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791a52f9ec21735243ad9917cda3ca077d32',·1,·'GPU:&#160;pme.h']1423 ········['../pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791a52f9ec21735243ad9917cda3ca077d32',·1,·'GPU:&#160;pme.h']
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1426 ········['../classgmx_1_1Gpu3dFft.xhtml',·1,·'gmx::Gpu3dFft']1426 ········['../classgmx_1_1Gpu3dFft.xhtml',·1,·'gmx::Gpu3dFft']
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1429 ····['gpu_5f3dfft_2eh_1005',·['gpu_3dfft.h',·['../gpu__3dfft_8h.xhtml',·1,·'']]],1429 ····['gpu_5f3dfft_2eh_1005',·['gpu_3dfft.h',·['../gpu__3dfft_8h.xhtml',·1,·'']]],
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1449 ····['gpu_5f3dfft_5fsycl_5fvkfft_2ecpp_1025',·['gpu_3dfft_sycl_vkfft.cpp',·['../gpu__3dfft__sycl__vkfft_8cpp.xhtml',·1,·'']]],1449 ····['gpu_5f3dfft_5fsycl_5fvkfft_2ecpp_1025',·['gpu_3dfft_sycl_vkfft.cpp',·['../gpu__3dfft__sycl__vkfft_8cpp.xhtml',·1,·'']]],
1450 ····['gpu_5f3dfft_5fsycl_5fvkfft_2eh_1026',·['gpu_3dfft_sycl_vkfft.h',·['../gpu__3dfft__sycl__vkfft_8h.xhtml',·1,·'']]],1450 ····['gpu_5f3dfft_5fsycl_5fvkfft_2eh_1026',·['gpu_3dfft_sycl_vkfft.h',·['../gpu__3dfft__sycl__vkfft_8h.xhtml',·1,·'']]],
1451 ····['gpu_5faccumulate_5ftimings_1027',·['gpu_accumulate_timings',·['../namespaceNbnxm.xhtml#a2d3096195938f2b449db6229daaec598',·1,·'Nbnxm']]],1451 ····['gpu_5faccumulate_5ftimings_1027',·['gpu_accumulate_timings',·['../namespaceNbnxm.xhtml#a2d3096195938f2b449db6229daaec598',·1,·'Nbnxm']]],
1452 ····['gpu_5fclear_5foutputs_1028',·['gpu_clear_outputs',·['../namespaceNbnxm.xhtml#a0265ef6de04acc0eb2541af1553ed62c',·1,·'Nbnxm']]],1452 ····['gpu_5fclear_5foutputs_1028',·['gpu_clear_outputs',·['../namespaceNbnxm.xhtml#a0265ef6de04acc0eb2541af1553ed62c',·1,·'Nbnxm']]],
1453 ····['gpu_5fcommon_2eh_1029',·['gpu_common.h',·['../gpu__common_8h.xhtml',·1,·'']]],1453 ····['gpu_5fcommon_2eh_1029',·['gpu_common.h',·['../gpu__common_8h.xhtml',·1,·'']]],
1454 ····['gpu_5fcommon_5futils_2eh_1030',·['gpu_common_utils.h',·['../gpu__common__utils_8h.xhtml',·1,·'']]],1454 ····['gpu_5fcommon_5futils_2eh_1030',·['gpu_common_utils.h',·['../gpu__common__utils_8h.xhtml',·1,·'']]],
 1455 ····['gpu_5fcopy_5fxq_5fto_5fgpu_1031',·['gpu_copy_xq_to_gpu',·['../namespaceNbnxm.xhtml#a6ab6c8201335eac27131707a6207cd23',·1,·'Nbnxm::gpu_copy_xq_to_gpu(NbnxmGpu·*nb,·const·nbnxn_atomdata_t·*nbatom,·const·AtomLocality·atomLocality)'],
1455 ····['gpu_5fcopy_5fxq_5fto_5fgpu_1031',·['gpu_copy_xq_to_gpu',·['../namespaceNbnxm.xhtml#a47baf14d693cf498e962c60359837101',·1,·'Nbnxm::gpu_copy_xq_to_gpu(NbnxmGpu·gmx_unused·*nb,·const·struct·nbnxn_atomdata_t·gmx_unused·*nbdata,·gmx::AtomLocality·gmx_unused·a[·...·truncated·by·diffoscope;·len:·7,·SHA:·3a3e3a24ba7923cdc527f64f2aeee3505d0d406962b976e94f4b7b3f0ac573bd·...·]1456 ········['../namespaceNbnxm.xhtml#a47baf14d693cf498e962c60359837101',·1,·'Nbnxm::gpu_copy_xq_to_gpu(NbnxmGpu·gmx_unused·*nb,·const·struct·nbnxn_atomdata_t·gmx_unused·*nbdata,·gmx::AtomLocality·gmx_unused·aloc)']
1456 ········['../namespaceNbnxm.xhtml#a6ab6c8201335eac27131707a6207cd23',·1,·'Nbnxm::gpu_copy_xq_to_gpu(NbnxmGpu·*nb,·const·nbnxn_atomdata_t·*nbatom,·const·AtomLocality·atomLocality)'] 
1457 ····]],1457 ····]],
1458 ····['gpu_5fdata_5fmgmt_2eh_1032',·['gpu_data_mgmt.h',·['../gpu__data__mgmt_8h.xhtml',·1,·'']]],1458 ····['gpu_5fdata_5fmgmt_2eh_1032',·['gpu_data_mgmt.h',·['../gpu__data__mgmt_8h.xhtml',·1,·'']]],
1459 ····['gpu_5ffree_1033',·['gpu_free',·['../namespaceNbnxm.xhtml#a4f5fa9f54b0226a99024cfc1b5f8317a',·1,·'Nbnxm::gpu_free(NbnxmGpu·*nb)'],1459 ····['gpu_5ffree_1033',·['gpu_free',·['../namespaceNbnxm.xhtml#a4f5fa9f54b0226a99024cfc1b5f8317a',·1,·'Nbnxm::gpu_free(NbnxmGpu·*nb)'],
1460 ········['../namespaceNbnxm.xhtml#a32826de04a785e08587c6769fa37718e',·1,·'Nbnxm::gpu_free(NbnxmGpu·gmx_unused·*nb)']1460 ········['../namespaceNbnxm.xhtml#a32826de04a785e08587c6769fa37718e',·1,·'Nbnxm::gpu_free(NbnxmGpu·gmx_unused·*nb)']
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1462 ····['gpu_5ffree_5fplatform_5fspecific_1034',·['gpu_free_platform_specific',·['../namespaceNbnxm.xhtml#ad0148ef44930e91b5950100e6ba1bce2',·1,·'Nbnxm']]],1462 ····['gpu_5ffree_5fplatform_5fspecific_1034',·['gpu_free_platform_specific',·['../namespaceNbnxm.xhtml#ad0148ef44930e91b5950100e6ba1bce2',·1,·'Nbnxm']]],
1463 ····['gpu_5fget_5ff_1035',·['gpu_get_f',·['../namespaceNbnxm.xhtml#abac2dba93430f43bac48391a09aa6f10',·1,·'Nbnxm']]],1463 ····['gpu_5fget_5ff_1035',·['gpu_get_f',·['../namespaceNbnxm.xhtml#abac2dba93430f43bac48391a09aa6f10',·1,·'Nbnxm']]],
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48 ····['hardware_20taskassignment_35',·['Assigning·simulation·tasks·to·hardware·(taskassignment)',·['../group__module__taskassignment.xhtml',·1,·'']]],48 ····['hardware_20taskassignment_35',·['Assigning·simulation·tasks·to·hardware·(taskassignment)',·['../group__module__taskassignment.xhtml',·1,·'']]],
49 ····['hardwaredetectiontestparams_36',·['HardwareDetectionTestParams',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mockhardwaretopology_8cpp_03.xhtml#a9f7fd9aa2aadb2fb12e381db86cf3753',·1,·'gmx::test::anonymous_namespace{mockhardwaretopology.cpp}']]],49 ····['hardwaredetectiontestparams_36',·['HardwareDetectionTestParams',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mockhardwaretopology_8cpp_03.xhtml#a9f7fd9aa2aadb2fb12e381db86cf3753',·1,·'gmx::test::anonymous_namespace{mockhardwaretopology.cpp}']]],
50 ····['hardwaretopology_37',·['hardwaretopology',·['../classgmx_1_1HardwareTopology.xhtml#a4d802133ee88be4fa18d0b76fdba0196',·1,·'gmx::HardwareTopology::HardwareTopology()'],50 ····['hardwaretopology_37',·['hardwaretopology',·['../classgmx_1_1HardwareTopology.xhtml#a4d802133ee88be4fa18d0b76fdba0196',·1,·'gmx::HardwareTopology::HardwareTopology()'],
51 ········['../classgmx_1_1HardwareTopology.xhtml',·1,·'gmx::HardwareTopology'],51 ········['../classgmx_1_1HardwareTopology.xhtml',·1,·'gmx::HardwareTopology'],
52 ········['../classgmx_1_1HardwareTopology.xhtml#a524b02638d5644ffc59a0576364bcfa7',·1,·'gmx::HardwareTopology::HardwareTopology(int·logicalProcessorCount)'],52 ········['../classgmx_1_1HardwareTopology.xhtml#a524b02638d5644ffc59a0576364bcfa7',·1,·'gmx::HardwareTopology::HardwareTopology(int·logicalProcessorCount)'],
53 ········['../classgmx_1_1HardwareTopology.xhtml#aef31c2ebd09d5d67b1b981af385e0e62',·1,·'gmx::HardwareTopology::HardwareTopology(const·std::map&lt;·int,·std::array&lt;·int,·3·&gt;·&gt;·&amp;logicalProcessorIdMap,·const·std::string·&amp;filesystemRoot)']53 ········['../classgmx_1_1HardwareTopology.xhtml#aef31c2ebd09d5d67b1b981af385e0e62',·1,·'gmx::HardwareTopology::HardwareTopology(const·std::map&lt;·int,·std::array&lt;·int,·3·&gt;·&gt;·&amp;logicalProcessorIdMap,·const·std::string·&amp;filesystemRoot)']
54 ····]],54 ····]],
55 ····['hardwaretopology_2ecpp_38',·['hardwaretopology.cpp',·['../tests_2hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)'],55 ····['hardwaretopology_2ecpp_38',·['hardwaretopology.cpp',·['../hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)'],
56 ········['../hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)']56 ········['../tests_2hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)']
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59 ····['hasall_40',·['hasAll',·['../structgmx_1_1SelectionTopologyProperties.xhtml#af8a7de4259caaa6fae5eb6e4fb12fbeb',·1,·'gmx::SelectionTopologyProperties']]],59 ····['hasall_40',·['hasAll',·['../structgmx_1_1SelectionTopologyProperties.xhtml#af8a7de4259caaa6fae5eb6e4fb12fbeb',·1,·'gmx::SelectionTopologyProperties']]],
60 ····['hasany_41',·['hasAny',·['../structgmx_1_1SelectionTopologyProperties.xhtml#a8f3322ffdccb62ca531f8e9bf66cb4eb',·1,·'gmx::SelectionTopologyProperties']]],60 ····['hasany_41',·['hasAny',·['../structgmx_1_1SelectionTopologyProperties.xhtml#a8f3322ffdccb62ca531f8e9bf66cb4eb',·1,·'gmx::SelectionTopologyProperties']]],
61 ····['hasbox_42',·['hasBox',·['../classgmx_1_1TrajectoryFrame.xhtml#a7460a889a7f6f45edb514dca72e984c7',·1,·'gmx::TrajectoryFrame']]],61 ····['hasbox_42',·['hasBox',·['../classgmx_1_1TrajectoryFrame.xhtml#a7460a889a7f6f45edb514dca72e984c7',·1,·'gmx::TrajectoryFrame']]],
62 ····['hasbreaks_43',·['hasBreaks',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1SecondaryStructuresData.xhtml#a85b888a0425d0e7ea1a678bce38350a4',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::SecondaryStructuresData']]],62 ····['hasbreaks_43',·['hasBreaks',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1SecondaryStructuresData.xhtml#a85b888a0425d0e7ea1a678bce38350a4',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::SecondaryStructuresData']]],
63 ····['hasbridges_44',·['hasBridges',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1SecondaryStructuresData.xhtml#a4bab808db0709f69205b569bcd4f3c6b',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::SecondaryStructuresData']]],63 ····['hasbridges_44',·['hasBridges',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1SecondaryStructuresData.xhtml#a4bab808db0709f69205b569bcd4f3c6b',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::SecondaryStructuresData']]],
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231 ····['helplinks_172',·['helplinks',·['../classgmx_1_1HelpLinks.xhtml',·1,·'gmx::HelpLinks'],231 ····['helplinks_172',·['helplinks',·['../classgmx_1_1HelpLinks.xhtml',·1,·'gmx::HelpLinks'],
232 ········['../classgmx_1_1HelpLinks.xhtml#a8be2854c046e14440fc5da7ebfb04767',·1,·'gmx::HelpLinks::HelpLinks()']232 ········['../classgmx_1_1HelpLinks.xhtml#a8be2854c046e14440fc5da7ebfb04767',·1,·'gmx::HelpLinks::HelpLinks()']
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235 ········['../classgmx_1_1HelpManager.xhtml',·1,·'gmx::HelpManager'] 
236 ····]],236 ····]],
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238 ········['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']238 ········['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
239 ····]],239 ····]],
240 ····['helpmanager_2eh_175',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]],240 ····['helpmanager_2eh_175',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]],
241 ····['helpmanagertest_176',·['HelpManagerTest',·['../namespaceanonymous__namespace_02helpmanager_8cpp_03.xhtml#a185e06a567d499a776617c3ecfbc1798',·1,·'anonymous_namespace{helpmanager.cpp}']]],241 ····['helpmanagertest_176',·['HelpManagerTest',·['../namespaceanonymous__namespace_02helpmanager_8cpp_03.xhtml#a185e06a567d499a776617c3ecfbc1798',·1,·'anonymous_namespace{helpmanager.cpp}']]],
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6 ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]],6 ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]],
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10 ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]],10 ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]],
11 ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]],11 ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]],
12 ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],12 ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],
13 ········['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']13 ········['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']
14 ····]],14 ····]],
15 ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],15 ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],
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17 ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]],17 ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]],
18 ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],18 ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],
19 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']19 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']
20 ····]],20 ····]],
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27 ····['biaswriter_2eh_25',·['biaswriter.h',·['../biaswriter_8h.xhtml',·1,·'']]],27 ····['biaswriter_2eh_25',·['biaswriter.h',·['../biaswriter_8h.xhtml',·1,·'']]],
28 ····['binaryinformation_2ecpp_26',·['binaryinformation.cpp',·['../binaryinformation_8cpp.xhtml',·1,·'']]],28 ····['binaryinformation_2ecpp_26',·['binaryinformation.cpp',·['../binaryinformation_8cpp.xhtml',·1,·'']]],
29 ····['binaryinformation_2eh_27',·['binaryinformation.h',·['../binaryinformation_8h.xhtml',·1,·'']]],29 ····['binaryinformation_2eh_27',·['binaryinformation.h',·['../binaryinformation_8h.xhtml',·1,·'']]],
30 ····['bitmask_2eh_28',·['bitmask.h',·['../include_2gromacs_2utility_2bitmask_8h.xhtml',·1,·'(Global·Namespace)'],30 ····['bitmask_2eh_28',·['bitmask.h',·['../include_2gromacs_2utility_2bitmask_8h.xhtml',·1,·'(Global·Namespace)'],
31 ········['../tests_2bitmask_8h.xhtml',·1,·'(Global·Namespace)']31 ········['../tests_2bitmask_8h.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['bonded_2ecpp_29',·['bonded.cpp',·['../bonded_8cpp.xhtml',·1,·'(Global·Namespace)'],33 ····['bonded_2ecpp_29',·['bonded.cpp',·['../tests_2bonded_8cpp.xhtml',·1,·'(Global·Namespace)'],
34 ········['../tests_2bonded_8cpp.xhtml',·1,·'(Global·Namespace)']34 ········['../bonded_8cpp.xhtml',·1,·'(Global·Namespace)']
35 ····]],35 ····]],
36 ····['bonded_2eh_30',·['bonded.h',·['../bonded_8h.xhtml',·1,·'']]],36 ····['bonded_2eh_30',·['bonded.h',·['../bonded_8h.xhtml',·1,·'']]],
37 ····['booltype_2ecpp_31',·['booltype.cpp',·['../tests_2booltype_8cpp.xhtml',·1,·'(Global·Namespace)'],37 ····['booltype_2ecpp_31',·['booltype.cpp',·['../tests_2booltype_8cpp.xhtml',·1,·'(Global·Namespace)'],
38 ········['../booltype_8cpp.xhtml',·1,·'(Global·Namespace)']38 ········['../booltype_8cpp.xhtml',·1,·'(Global·Namespace)']
39 ····]],39 ····]],
40 ····['booltype_2eh_32',·['booltype.h',·['../booltype_8h.xhtml',·1,·'']]],40 ····['booltype_2eh_32',·['booltype.h',·['../booltype_8h.xhtml',·1,·'']]],
41 ····['bootstrap_5floadstore_2ecpp_33',·['bootstrap_loadstore.cpp',·['../bootstrap__loadstore_8cpp.xhtml',·1,·'']]],41 ····['bootstrap_5floadstore_2ecpp_33',·['bootstrap_loadstore.cpp',·['../bootstrap__loadstore_8cpp.xhtml',·1,·'']]],
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22 ····['register_2ecpp_18',·['register.cpp',·['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],22 ····['register_2ecpp_18',·['register.cpp',·['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],
23 ········['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)']23 ········['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)']
24 ····]],24 ····]],
25 ····['register_2eh_19',·['register.h',·['../register_8h.xhtml',·1,·'']]],25 ····['register_2eh_19',·['register.h',·['../register_8h.xhtml',·1,·'']]],
26 ····['repeatingsection_2ecpp_20',·['repeatingsection.cpp',·['../repeatingsection_8cpp.xhtml',·1,·'']]],26 ····['repeatingsection_2ecpp_20',·['repeatingsection.cpp',·['../repeatingsection_8cpp.xhtml',·1,·'']]],
27 ····['repeatingsection_2eh_21',·['repeatingsection.h',·['../repeatingsection_8h.xhtml',·1,·'']]],27 ····['repeatingsection_2eh_21',·['repeatingsection.h',·['../repeatingsection_8h.xhtml',·1,·'']]],
28 ····['replicaexchange_2ecpp_22',·['replicaexchange.cpp',·['../gromacs_2mdrun_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)'],28 ····['replicaexchange_2ecpp_22',·['replicaexchange.cpp',·['../programs_2mdrun_2tests_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)'],
29 ········['../programs_2mdrun_2tests_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)']29 ········['../gromacs_2mdrun_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)']
30 ····]],30 ····]],
31 ····['replicaexchange_2eh_23',·['replicaexchange.h',·['../replicaexchange_8h.xhtml',·1,·'']]],31 ····['replicaexchange_2eh_23',·['replicaexchange.h',·['../replicaexchange_8h.xhtml',·1,·'']]],
32 ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]],32 ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]],
33 ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]],33 ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]],
34 ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]],34 ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]],
35 ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]],35 ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]],
36 ····['requirements_2ecpp_28',·['requirements.cpp',·['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)'],36 ····['requirements_2ecpp_28',·['requirements.cpp',·['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)'],
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3 ········['../tests_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)']3 ········['../modules_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)']
4 ····]],4 ····]],
5 ····['sasa_2eh_1',·['sasa.h',·['../sasa_8h.xhtml',·1,·'']]],5 ····['sasa_2eh_1',·['sasa.h',·['../sasa_8h.xhtml',·1,·'']]],
6 ····['scalar_2eh_2',·['scalar.h',·['../scalar_8h.xhtml',·1,·'']]],6 ····['scalar_2eh_2',·['scalar.h',·['../scalar_8h.xhtml',·1,·'']]],
7 ····['scalar_5fmath_2eh_3',·['scalar_math.h',·['../scalar__math_8h.xhtml',·1,·'']]],7 ····['scalar_5fmath_2eh_3',·['scalar_math.h',·['../scalar__math_8h.xhtml',·1,·'']]],
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52 ····['selhelp_2eh_40',·['selhelp.h',·['../selhelp_8h.xhtml',·1,·'']]],52 ····['selhelp_2eh_40',·['selhelp.h',·['../selhelp_8h.xhtml',·1,·'']]],
53 ····['selmethod_2ecpp_41',·['selmethod.cpp',·['../selmethod_8cpp.xhtml',·1,·'']]],53 ····['selmethod_2ecpp_41',·['selmethod.cpp',·['../selmethod_8cpp.xhtml',·1,·'']]],
54 ····['selmethod_2eh_42',·['selmethod.h',·['../selmethod_8h.xhtml',·1,·'']]],54 ····['selmethod_2eh_42',·['selmethod.h',·['../selmethod_8h.xhtml',·1,·'']]],
55 ····['selparam_2eh_43',·['selparam.h',·['../selparam_8h.xhtml',·1,·'']]],55 ····['selparam_2eh_43',·['selparam.h',·['../selparam_8h.xhtml',·1,·'']]],
56 ····['selvalue_2ecpp_44',·['selvalue.cpp',·['../selvalue_8cpp.xhtml',·1,·'']]],56 ····['selvalue_2ecpp_44',·['selvalue.cpp',·['../selvalue_8cpp.xhtml',·1,·'']]],
57 ····['selvalue_2eh_45',·['selvalue.h',·['../selvalue_8h.xhtml',·1,·'']]],57 ····['selvalue_2eh_45',·['selvalue.h',·['../selvalue_8h.xhtml',·1,·'']]],
58 ····['setatoms_2ecpp_46',·['setatoms.cpp',·['../tests_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)'],58 ····['setatoms_2ecpp_46',·['setatoms.cpp',·['../outputadapters_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)'],
59 ········['../outputadapters_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)']59 ········['../tests_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)']
60 ····]],60 ····]],
61 ····['setatoms_2eh_47',·['setatoms.h',·['../setatoms_8h.xhtml',·1,·'']]],61 ····['setatoms_2eh_47',·['setatoms.h',·['../setatoms_8h.xhtml',·1,·'']]],
62 ····['setbothtime_2ecpp_48',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],62 ····['setbothtime_2ecpp_48',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],
63 ····['setbox_2eh_49',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]],63 ····['setbox_2eh_49',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]],
64 ····['setenv_2eh_50',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]],64 ····['setenv_2eh_50',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]],
65 ····['setforces_2ecpp_51',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]],65 ····['setforces_2ecpp_51',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]],
66 ····['setforces_2eh_52',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]],66 ····['setforces_2eh_52',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]],
67 ····['setprecision_2ecpp_53',·['setprecision.cpp',·['../setprecision_8cpp.xhtml',·1,·'']]],67 ····['setprecision_2ecpp_53',·['setprecision.cpp',·['../setprecision_8cpp.xhtml',·1,·'']]],
68 ····['setprecision_2eh_54',·['setprecision.h',·['../setprecision_8h.xhtml',·1,·'']]],68 ····['setprecision_2eh_54',·['setprecision.h',·['../setprecision_8h.xhtml',·1,·'']]],
69 ····['setstarttime_2ecpp_55',·['setstarttime.cpp',·['../tests_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)'],69 ····['setstarttime_2ecpp_55',·['setstarttime.cpp',·['../outputadapters_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)'],
70 ········['../outputadapters_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)']70 ········['../tests_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)']
71 ····]],71 ····]],
72 ····['setstarttime_2eh_56',·['setstarttime.h',·['../setstarttime_8h.xhtml',·1,·'']]],72 ····['setstarttime_2eh_56',·['setstarttime.h',·['../setstarttime_8h.xhtml',·1,·'']]],
73 ····['settimestep_2ecpp_57',·['settimestep.cpp',·['../outputadapters_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'],73 ····['settimestep_2ecpp_57',·['settimestep.cpp',·['../outputadapters_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'],
74 ········['../tests_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)']74 ········['../tests_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)']
75 ····]],75 ····]],
76 ····['settimestep_2eh_58',·['settimestep.h',·['../settimestep_8h.xhtml',·1,·'']]],76 ····['settimestep_2eh_58',·['settimestep.h',·['../settimestep_8h.xhtml',·1,·'']]],
77 ····['settle_2ecpp_59',·['settle.cpp',·['../settle_8cpp.xhtml',·1,·'(Global·Namespace)'],77 ····['settle_2ecpp_59',·['settle.cpp',·['../tests_2settle_8cpp.xhtml',·1,·'(Global·Namespace)'],
78 ········['../tests_2settle_8cpp.xhtml',·1,·'(Global·Namespace)']78 ········['../settle_8cpp.xhtml',·1,·'(Global·Namespace)']
79 ····]],79 ····]],
80 ····['settle_2eh_60',·['settle.h',·['../settle_8h.xhtml',·1,·'']]],80 ····['settle_2eh_60',·['settle.h',·['../settle_8h.xhtml',·1,·'']]],
81 ····['settle_5fgpu_2ecpp_61',·['settle_gpu.cpp',·['../settle__gpu_8cpp.xhtml',·1,·'']]],81 ····['settle_5fgpu_2ecpp_61',·['settle_gpu.cpp',·['../settle__gpu_8cpp.xhtml',·1,·'']]],
82 ····['settle_5fgpu_2eh_62',·['settle_gpu.h',·['../settle__gpu_8h.xhtml',·1,·'']]],82 ····['settle_5fgpu_2eh_62',·['settle_gpu.h',·['../settle__gpu_8h.xhtml',·1,·'']]],
83 ····['settle_5fgpu_5finternal_2eh_63',·['settle_gpu_internal.h',·['../settle__gpu__internal_8h.xhtml',·1,·'']]],83 ····['settle_5fgpu_5finternal_2eh_63',·['settle_gpu_internal.h',·['../settle__gpu__internal_8h.xhtml',·1,·'']]],
84 ····['settle_5fgpu_5finternal_5fsycl_2ecpp_64',·['settle_gpu_internal_sycl.cpp',·['../settle__gpu__internal__sycl_8cpp.xhtml',·1,·'']]],84 ····['settle_5fgpu_5finternal_5fsycl_2ecpp_64',·['settle_gpu_internal_sycl.cpp',·['../settle__gpu__internal__sycl_8cpp.xhtml',·1,·'']]],
85 ····['settletestdata_2ecpp_65',·['settletestdata.cpp',·['../settletestdata_8cpp.xhtml',·1,·'']]],85 ····['settletestdata_2ecpp_65',·['settletestdata.cpp',·['../settletestdata_8cpp.xhtml',·1,·'']]],
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65 ····['colvarsforceprovider_2ecpp_47',·['colvarsforceprovider.cpp',·['../tests_2colvarsforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],65 ····['colvarsforceprovider_2ecpp_47',·['colvarsforceprovider.cpp',·['../tests_2colvarsforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
66 ········['../colvarsforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']66 ········['../colvarsforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
67 ····]],67 ····]],
68 ····['colvarsforceprovider_2eh_48',·['colvarsforceprovider.h',·['../colvarsforceprovider_8h.xhtml',·1,·'']]],68 ····['colvarsforceprovider_2eh_48',·['colvarsforceprovider.h',·['../colvarsforceprovider_8h.xhtml',·1,·'']]],
69 ····['colvarsmdmodule_2ecpp_49',·['colvarsMDModule.cpp',·['../colvarsMDModule_8cpp.xhtml',·1,·'']]],69 ····['colvarsmdmodule_2ecpp_49',·['colvarsMDModule.cpp',·['../colvarsMDModule_8cpp.xhtml',·1,·'']]],
70 ····['colvarsmdmodule_2eh_50',·['colvarsMDModule.h',·['../colvarsMDModule_8h.xhtml',·1,·'']]],70 ····['colvarsmdmodule_2eh_50',·['colvarsMDModule.h',·['../colvarsMDModule_8h.xhtml',·1,·'']]],
71 ····['colvarsmdmodule_5fstub_2ecpp_51',·['colvarsMDModule_stub.cpp',·['../colvarsMDModule__stub_8cpp.xhtml',·1,·'']]],71 ····['colvarsmdmodule_5fstub_2ecpp_51',·['colvarsMDModule_stub.cpp',·['../colvarsMDModule__stub_8cpp.xhtml',·1,·'']]],
72 ····['colvarsoptions_2ecpp_52',·['colvarsoptions.cpp',·['../tests_2colvarsoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],72 ····['colvarsoptions_2ecpp_52',·['colvarsoptions.cpp',·['../colvarsoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
73 ········['../colvarsoptions_8cpp.xhtml',·1,·'(Global·Namespace)']73 ········['../tests_2colvarsoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
74 ····]],74 ····]],
75 ····['colvarsoptions_2eh_53',·['colvarsoptions.h',·['../colvarsoptions_8h.xhtml',·1,·'']]],75 ····['colvarsoptions_2eh_53',·['colvarsoptions.h',·['../colvarsoptions_8h.xhtml',·1,·'']]],
76 ····['colvarspreprocessor_2ecpp_54',·['colvarspreprocessor.cpp',·['../tests_2colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],76 ····['colvarspreprocessor_2ecpp_54',·['colvarspreprocessor.cpp',·['../tests_2colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
77 ········['../colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']77 ········['../colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
78 ····]],78 ····]],
79 ····['colvarspreprocessor_2eh_55',·['colvarspreprocessor.h',·['../colvarspreprocessor_8h.xhtml',·1,·'']]],79 ····['colvarspreprocessor_2eh_55',·['colvarspreprocessor.h',·['../colvarspreprocessor_8h.xhtml',·1,·'']]],
80 ····['colvarssimulationsparameters_2ecpp_56',·['colvarssimulationsparameters.cpp',·['../colvarssimulationsparameters_8cpp.xhtml',·1,·'']]],80 ····['colvarssimulationsparameters_2ecpp_56',·['colvarssimulationsparameters.cpp',·['../colvarssimulationsparameters_8cpp.xhtml',·1,·'']]],
Offset 94, 16 lines modifiedOffset 94, 16 lines modified
94 ····['computeglobalselement_2eh_68',·['computeglobalselement.h',·['../computeglobalselement_8h.xhtml',·1,·'']]],94 ····['computeglobalselement_2eh_68',·['computeglobalselement.h',·['../computeglobalselement_8h.xhtml',·1,·'']]],
95 ····['computemultibodycutoffs_2ecpp_69',·['computemultibodycutoffs.cpp',·['../computemultibodycutoffs_8cpp.xhtml',·1,·'']]],95 ····['computemultibodycutoffs_2ecpp_69',·['computemultibodycutoffs.cpp',·['../computemultibodycutoffs_8cpp.xhtml',·1,·'']]],
96 ····['computemultibodycutoffs_2eh_70',·['computemultibodycutoffs.h',·['../computemultibodycutoffs_8h.xhtml',·1,·'']]],96 ····['computemultibodycutoffs_2eh_70',·['computemultibodycutoffs.h',·['../computemultibodycutoffs_8h.xhtml',·1,·'']]],
97 ····['confio_2ecpp_71',·['confio.cpp',·['../tests_2confio_8cpp.xhtml',·1,·'']]],97 ····['confio_2ecpp_71',·['confio.cpp',·['../tests_2confio_8cpp.xhtml',·1,·'']]],
98 ····['conftest_2ecpp_72',·['conftest.cpp',·['../conftest_8cpp.xhtml',·1,·'']]],98 ····['conftest_2ecpp_72',·['conftest.cpp',·['../conftest_8cpp.xhtml',·1,·'']]],
99 ····['conftest_2eh_73',·['conftest.h',·['../conftest_8h.xhtml',·1,·'']]],99 ····['conftest_2eh_73',·['conftest.h',·['../conftest_8h.xhtml',·1,·'']]],
100 ····['constantacceleration_2ecpp_74',·['constantacceleration.cpp',·['../constantacceleration_8cpp.xhtml',·1,·'']]],100 ····['constantacceleration_2ecpp_74',·['constantacceleration.cpp',·['../constantacceleration_8cpp.xhtml',·1,·'']]],
101 ····['constr_2ecpp_75',·['constr.cpp',·['../constr_8cpp.xhtml',·1,·'(Global·Namespace)'],101 ····['constr_2ecpp_75',·['constr.cpp',·['../tests_2constr_8cpp.xhtml',·1,·'(Global·Namespace)'],
102 ········['../tests_2constr_8cpp.xhtml',·1,·'(Global·Namespace)']102 ········['../constr_8cpp.xhtml',·1,·'(Global·Namespace)']
103 ····]],103 ····]],
104 ····['constr_2eh_76',·['constr.h',·['../constr_8h.xhtml',·1,·'']]],104 ····['constr_2eh_76',·['constr.h',·['../constr_8h.xhtml',·1,·'']]],
105 ····['constraintelement_2ecpp_77',·['constraintelement.cpp',·['../constraintelement_8cpp.xhtml',·1,·'']]],105 ····['constraintelement_2ecpp_77',·['constraintelement.cpp',·['../constraintelement_8cpp.xhtml',·1,·'']]],
106 ····['constraintelement_2eh_78',·['constraintelement.h',·['../constraintelement_8h.xhtml',·1,·'']]],106 ····['constraintelement_2eh_78',·['constraintelement.h',·['../constraintelement_8h.xhtml',·1,·'']]],
107 ····['constrtestdata_2ecpp_79',·['constrtestdata.cpp',·['../constrtestdata_8cpp.xhtml',·1,·'']]],107 ····['constrtestdata_2ecpp_79',·['constrtestdata.cpp',·['../constrtestdata_8cpp.xhtml',·1,·'']]],
108 ····['constrtestdata_2eh_80',·['constrtestdata.h',·['../constrtestdata_8h.xhtml',·1,·'']]],108 ····['constrtestdata_2eh_80',·['constrtestdata.h',·['../constrtestdata_8h.xhtml',·1,·'']]],
109 ····['constrtestrunners_2ecpp_81',·['constrtestrunners.cpp',·['../constrtestrunners_8cpp.xhtml',·1,·'']]],109 ····['constrtestrunners_2ecpp_81',·['constrtestrunners.cpp',·['../constrtestrunners_8cpp.xhtml',·1,·'']]],
Offset 130, 16 lines modifiedOffset 130, 16 lines modified
130 ····['correlationdataset_2eh_98',·['correlationdataset.h',·['../correlationdataset_8h.xhtml',·1,·'']]],130 ····['correlationdataset_2eh_98',·['correlationdataset.h',·['../correlationdataset_8h.xhtml',·1,·'']]],
131 ····['correlationgrid_2ecpp_99',·['correlationgrid.cpp',·['../correlationgrid_8cpp.xhtml',·1,·'']]],131 ····['correlationgrid_2ecpp_99',·['correlationgrid.cpp',·['../correlationgrid_8cpp.xhtml',·1,·'']]],
132 ····['correlationgrid_2eh_100',·['correlationgrid.h',·['../correlationgrid_8h.xhtml',·1,·'']]],132 ····['correlationgrid_2eh_100',·['correlationgrid.h',·['../correlationgrid_8h.xhtml',·1,·'']]],
133 ····['correlationhistory_2ecpp_101',·['correlationhistory.cpp',·['../correlationhistory_8cpp.xhtml',·1,·'']]],133 ····['correlationhistory_2ecpp_101',·['correlationhistory.cpp',·['../correlationhistory_8cpp.xhtml',·1,·'']]],
134 ····['correlationhistory_2eh_102',·['correlationhistory.h',·['../correlationhistory_8h.xhtml',·1,·'']]],134 ····['correlationhistory_2eh_102',·['correlationhistory.h',·['../correlationhistory_8h.xhtml',·1,·'']]],
135 ····['correlationtensor_2ecpp_103',·['correlationtensor.cpp',·['../correlationtensor_8cpp.xhtml',·1,·'']]],135 ····['correlationtensor_2ecpp_103',·['correlationtensor.cpp',·['../correlationtensor_8cpp.xhtml',·1,·'']]],
136 ····['correlationtensor_2eh_104',·['correlationtensor.h',·['../correlationtensor_8h.xhtml',·1,·'']]],136 ····['correlationtensor_2eh_104',·['correlationtensor.h',·['../correlationtensor_8h.xhtml',·1,·'']]],
137 ····['cpuinfo_2ecpp_105',·['cpuinfo.cpp',·['../tests_2cpuinfo_8cpp.xhtml',·1,·'(Global·Namespace)'],137 ····['cpuinfo_2ecpp_105',·['cpuinfo.cpp',·['../cpuinfo_8cpp.xhtml',·1,·'(Global·Namespace)'],
138 ········['../cpuinfo_8cpp.xhtml',·1,·'(Global·Namespace)']138 ········['../tests_2cpuinfo_8cpp.xhtml',·1,·'(Global·Namespace)']
139 ····]],139 ····]],
140 ····['cpuinfo_2eh_106',·['cpuinfo.h',·['../cpuinfo_8h.xhtml',·1,·'']]],140 ····['cpuinfo_2eh_106',·['cpuinfo.h',·['../cpuinfo_8h.xhtml',·1,·'']]],
141 ····['crosscorr_2ecpp_107',·['crosscorr.cpp',·['../crosscorr_8cpp.xhtml',·1,·'']]],141 ····['crosscorr_2ecpp_107',·['crosscorr.cpp',·['../crosscorr_8cpp.xhtml',·1,·'']]],
142 ····['crosscorr_2eh_108',·['crosscorr.h',·['../crosscorr_8h.xhtml',·1,·'']]],142 ····['crosscorr_2eh_108',·['crosscorr.h',·['../crosscorr_8h.xhtml',·1,·'']]],
143 ····['cstringutil_2ecpp_109',·['cstringutil.cpp',·['../tests_2cstringutil_8cpp.xhtml',·1,·'']]],143 ····['cstringutil_2ecpp_109',·['cstringutil.cpp',·['../tests_2cstringutil_8cpp.xhtml',·1,·'']]],
144 ····['cstringutil_2eh_110',·['cstringutil.h',·['../cstringutil_8h.xhtml',·1,·'']]],144 ····['cstringutil_2eh_110',·['cstringutil.h',·['../cstringutil_8h.xhtml',·1,·'']]],
145 ····['cubicsplinetable_2ecpp_111',·['cubicsplinetable.cpp',·['../cubicsplinetable_8cpp.xhtml',·1,·'']]],145 ····['cubicsplinetable_2ecpp_111',·['cubicsplinetable.cpp',·['../cubicsplinetable_8cpp.xhtml',·1,·'']]],
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js-beautify {}
    
Offset 16, 31 lines modifiedOffset 16, 31 lines modified
16 ····['datatest_2eh_14',·['datatest.h',·['../datatest_8h.xhtml',·1,·'']]],16 ····['datatest_2eh_14',·['datatest.h',·['../datatest_8h.xhtml',·1,·'']]],
17 ····['decidegpuusage_2ecpp_15',·['decidegpuusage.cpp',·['../decidegpuusage_8cpp.xhtml',·1,·'']]],17 ····['decidegpuusage_2ecpp_15',·['decidegpuusage.cpp',·['../decidegpuusage_8cpp.xhtml',·1,·'']]],
18 ····['decidegpuusage_2eh_16',·['decidegpuusage.h',·['../decidegpuusage_8h.xhtml',·1,·'']]],18 ····['decidegpuusage_2eh_16',·['decidegpuusage.h',·['../decidegpuusage_8h.xhtml',·1,·'']]],
19 ····['decidesimulationworkload_2ecpp_17',·['decidesimulationworkload.cpp',·['../decidesimulationworkload_8cpp.xhtml',·1,·'']]],19 ····['decidesimulationworkload_2ecpp_17',·['decidesimulationworkload.cpp',·['../decidesimulationworkload_8cpp.xhtml',·1,·'']]],
20 ····['decidesimulationworkload_2eh_18',·['decidesimulationworkload.h',·['../decidesimulationworkload_8h.xhtml',·1,·'']]],20 ····['decidesimulationworkload_2eh_18',·['decidesimulationworkload.h',·['../decidesimulationworkload_8h.xhtml',·1,·'']]],
21 ····['defaultinitializationallocator_2ecpp_19',·['defaultinitializationallocator.cpp',·['../defaultinitializationallocator_8cpp.xhtml',·1,·'']]],21 ····['defaultinitializationallocator_2ecpp_19',·['defaultinitializationallocator.cpp',·['../defaultinitializationallocator_8cpp.xhtml',·1,·'']]],
22 ····['defaultinitializationallocator_2eh_20',·['defaultinitializationallocator.h',·['../defaultinitializationallocator_8h.xhtml',·1,·'']]],22 ····['defaultinitializationallocator_2eh_20',·['defaultinitializationallocator.h',·['../defaultinitializationallocator_8h.xhtml',·1,·'']]],
23 ····['densityfit_2ecpp_21',·['densityfit.cpp',·['../tests_2densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'],23 ····['densityfit_2ecpp_21',·['densityfit.cpp',·['../densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'],
24 ········['../densityfit_8cpp.xhtml',·1,·'(Global·Namespace)']24 ········['../tests_2densityfit_8cpp.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['densityfit_2eh_22',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],26 ····['densityfit_2eh_22',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],
27 ····['densityfitting_2ecpp_23',·['densityfitting.cpp',·['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],27 ····['densityfitting_2ecpp_23',·['densityfitting.cpp',·['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],
28 ········['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']28 ········['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']
29 ····]],29 ····]],
30 ····['densityfittingamplitudelookup_2ecpp_24',·['densityfittingamplitudelookup.cpp',·['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],30 ····['densityfittingamplitudelookup_2ecpp_24',·['densityfittingamplitudelookup.cpp',·['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],
31 ········['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']31 ········['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],33 ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],
34 ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']
36 ····]],36 ····]],
37 ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],37 ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],
38 ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],38 ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
39 ········['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']39 ········['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
40 ····]],40 ····]],
41 ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],41 ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],
42 ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],42 ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],
43 ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],43 ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
44 ········['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)']44 ········['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
45 ····]],45 ····]],
46 ····['densityfittingoptions_2eh_32',·['densityfittingoptions.h',·['../densityfittingoptions_8h.xhtml',·1,·'']]],46 ····['densityfittingoptions_2eh_32',·['densityfittingoptions.h',·['../densityfittingoptions_8h.xhtml',·1,·'']]],
Offset 53, 27 lines modifiedOffset 53, 27 lines modified
53 ····['device_5fcontext_2eh_39',·['device_context.h',·['../device__context_8h.xhtml',·1,·'']]],53 ····['device_5fcontext_2eh_39',·['device_context.h',·['../device__context_8h.xhtml',·1,·'']]],
54 ····['device_5fcontext_5focl_2ecpp_40',·['device_context_ocl.cpp',·['../device__context__ocl_8cpp.xhtml',·1,·'']]],54 ····['device_5fcontext_5focl_2ecpp_40',·['device_context_ocl.cpp',·['../device__context__ocl_8cpp.xhtml',·1,·'']]],
55 ····['device_5fcontext_5fsycl_2ecpp_41',·['device_context_sycl.cpp',·['../device__context__sycl_8cpp.xhtml',·1,·'']]],55 ····['device_5fcontext_5fsycl_2ecpp_41',·['device_context_sycl.cpp',·['../device__context__sycl_8cpp.xhtml',·1,·'']]],
56 ····['device_5fevent_2eh_42',·['device_event.h',·['../device__event_8h.xhtml',·1,·'']]],56 ····['device_5fevent_2eh_42',·['device_event.h',·['../device__event_8h.xhtml',·1,·'']]],
57 ····['device_5fevent_5focl_2eh_43',·['device_event_ocl.h',·['../device__event__ocl_8h.xhtml',·1,·'']]],57 ····['device_5fevent_5focl_2eh_43',·['device_event_ocl.h',·['../device__event__ocl_8h.xhtml',·1,·'']]],
58 ····['device_5fevent_5fsycl_2eh_44',·['device_event_sycl.h',·['../device__event__sycl_8h.xhtml',·1,·'']]],58 ····['device_5fevent_5fsycl_2eh_44',·['device_event_sycl.h',·['../device__event__sycl_8h.xhtml',·1,·'']]],
59 ····['device_5finformation_2eh_45',·['device_information.h',·['../device__information_8h.xhtml',·1,·'']]],59 ····['device_5finformation_2eh_45',·['device_information.h',·['../device__information_8h.xhtml',·1,·'']]],
60 ····['device_5fmanagement_2ecpp_46',·['device_management.cpp',·['../tests_2device__management_8cpp.xhtml',·1,·'(Global·Namespace)'],60 ····['device_5fmanagement_2ecpp_46',·['device_management.cpp',·['../device__management_8cpp.xhtml',·1,·'(Global·Namespace)'],
61 ········['../device__management_8cpp.xhtml',·1,·'(Global·Namespace)']61 ········['../tests_2device__management_8cpp.xhtml',·1,·'(Global·Namespace)']
62 ····]],62 ····]],
63 ····['device_5fmanagement_2eh_47',·['device_management.h',·['../device__management_8h.xhtml',·1,·'']]],63 ····['device_5fmanagement_2eh_47',·['device_management.h',·['../device__management_8h.xhtml',·1,·'']]],
64 ····['device_5fmanagement_5fcommon_2ecpp_48',·['device_management_common.cpp',·['../device__management__common_8cpp.xhtml',·1,·'']]],64 ····['device_5fmanagement_5fcommon_2ecpp_48',·['device_management_common.cpp',·['../device__management__common_8cpp.xhtml',·1,·'']]],
65 ····['device_5fmanagement_5focl_2ecpp_49',·['device_management_ocl.cpp',·['../device__management__ocl_8cpp.xhtml',·1,·'']]],65 ····['device_5fmanagement_5focl_2ecpp_49',·['device_management_ocl.cpp',·['../device__management__ocl_8cpp.xhtml',·1,·'']]],
66 ····['device_5fmanagement_5fsycl_2ecpp_50',·['device_management_sycl.cpp',·['../device__management__sycl_8cpp.xhtml',·1,·'']]],66 ····['device_5fmanagement_5fsycl_2ecpp_50',·['device_management_sycl.cpp',·['../device__management__sycl_8cpp.xhtml',·1,·'']]],
67 ····['device_5fmanagement_5fsycl_5fintel_5fdevice_5fids_2ecpp_51',·['device_management_sycl_intel_device_ids.cpp',·['../device__management__sycl__intel__device__ids_8cpp.xhtml',·1,·'']]],67 ····['device_5fmanagement_5fsycl_5fintel_5fdevice_5fids_2ecpp_51',·['device_management_sycl_intel_device_ids.cpp',·['../device__management__sycl__intel__device__ids_8cpp.xhtml',·1,·'']]],
68 ····['device_5fmanagement_5fsycl_5fintel_5fdevice_5fids_2eh_52',·['device_management_sycl_intel_device_ids.h',·['../device__management__sycl__intel__device__ids_8h.xhtml',·1,·'']]],68 ····['device_5fmanagement_5fsycl_5fintel_5fdevice_5fids_2eh_52',·['device_management_sycl_intel_device_ids.h',·['../device__management__sycl__intel__device__ids_8h.xhtml',·1,·'']]],
69 ····['device_5fstream_2ecpp_53',·['device_stream.cpp',·['../device__stream_8cpp.xhtml',·1,·'']]],69 ····['device_5fstream_2ecpp_53',·['device_stream.cpp',·['../device__stream_8cpp.xhtml',·1,·'']]],
70 ····['device_5fstream_2eh_54',·['device_stream.h',·['../device__stream_8h.xhtml',·1,·'']]],70 ····['device_5fstream_2eh_54',·['device_stream.h',·['../device__stream_8h.xhtml',·1,·'']]],
71 ····['device_5fstream_5fmanager_2ecpp_55',·['device_stream_manager.cpp',·['../device__stream__manager_8cpp.xhtml',·1,·'(Global·Namespace)'],71 ····['device_5fstream_5fmanager_2ecpp_55',·['device_stream_manager.cpp',·['../tests_2device__stream__manager_8cpp.xhtml',·1,·'(Global·Namespace)'],
72 ········['../tests_2device__stream__manager_8cpp.xhtml',·1,·'(Global·Namespace)']72 ········['../device__stream__manager_8cpp.xhtml',·1,·'(Global·Namespace)']
73 ····]],73 ····]],
74 ····['device_5fstream_5fmanager_2eh_56',·['device_stream_manager.h',·['../device__stream__manager_8h.xhtml',·1,·'']]],74 ····['device_5fstream_5fmanager_2eh_56',·['device_stream_manager.h',·['../device__stream__manager_8h.xhtml',·1,·'']]],
75 ····['device_5fstream_5focl_2ecpp_57',·['device_stream_ocl.cpp',·['../device__stream__ocl_8cpp.xhtml',·1,·'']]],75 ····['device_5fstream_5focl_2ecpp_57',·['device_stream_ocl.cpp',·['../device__stream__ocl_8cpp.xhtml',·1,·'']]],
76 ····['device_5fstream_5fsycl_2ecpp_58',·['device_stream_sycl.cpp',·['../device__stream__sycl_8cpp.xhtml',·1,·'']]],76 ····['device_5fstream_5fsycl_2ecpp_58',·['device_stream_sycl.cpp',·['../device__stream__sycl_8cpp.xhtml',·1,·'']]],
77 ····['devicebuffer_2eh_59',·['devicebuffer.h',·['../devicebuffer_8h.xhtml',·1,·'']]],77 ····['devicebuffer_2eh_59',·['devicebuffer.h',·['../devicebuffer_8h.xhtml',·1,·'']]],
78 ····['devicebuffer_5fdatatype_2eh_60',·['devicebuffer_datatype.h',·['../devicebuffer__datatype_8h.xhtml',·1,·'']]],78 ····['devicebuffer_5fdatatype_2eh_60',·['devicebuffer_datatype.h',·['../devicebuffer__datatype_8h.xhtml',·1,·'']]],
79 ····['devicebuffer_5focl_2eh_61',·['devicebuffer_ocl.h',·['../devicebuffer__ocl_8h.xhtml',·1,·'']]],79 ····['devicebuffer_5focl_2eh_61',·['devicebuffer_ocl.h',·['../devicebuffer__ocl_8h.xhtml',·1,·'']]],
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116 ····['domdec_5fvsite_2eh_96',·['domdec_vsite.h',·['../domdec__vsite_8h.xhtml',·1,·'']]],116 ····['domdec_5fvsite_2eh_96',·['domdec_vsite.h',·['../domdec__vsite_8h.xhtml',·1,·'']]],
117 ····['domdechelper_2ecpp_97',·['domdechelper.cpp',·['../domdechelper_8cpp.xhtml',·1,·'']]],117 ····['domdechelper_2ecpp_97',·['domdechelper.cpp',·['../domdechelper_8cpp.xhtml',·1,·'']]],
118 ····['domdechelper_2eh_98',·['domdechelper.h',·['../domdechelper_8h.xhtml',·1,·'']]],118 ····['domdechelper_2eh_98',·['domdechelper.h',·['../domdechelper_8h.xhtml',·1,·'']]],
119 ····['dssp_2ecpp_99',·['dssp.cpp',·['../tests_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)'],119 ····['dssp_2ecpp_99',·['dssp.cpp',·['../tests_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)'],
120 ········['../modules_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)']120 ········['../modules_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)']
121 ····]],121 ····]],
122 ····['dssp_2eh_100',·['dssp.h',·['../dssp_8h.xhtml',·1,·'']]],122 ····['dssp_2eh_100',·['dssp.h',·['../dssp_8h.xhtml',·1,·'']]],
123 ····['dump_2ecpp_101',·['dump.cpp',·['../domdec_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],123 ····['dump_2ecpp_101',·['dump.cpp',·['../tools_2tests_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],
124 ········['../tools_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],124 ········['../tools_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],
125 ········['../tools_2tests_2dump_8cpp.xhtml',·1,·'(Global·Namespace)']125 ········['../domdec_2dump_8cpp.xhtml',·1,·'(Global·Namespace)']
126 ····]],126 ····]],
127 ····['dump_2eh_102',·['dump.h',·['../domdec_2dump_8h.xhtml',·1,·'']]]127 ····['dump_2eh_102',·['dump.h',·['../domdec_2dump_8h.xhtml',·1,·'']]]
128 ];128 ];
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9 ····['hardwaretopology_2eh_5',·['hardwaretopology.h',·['../hardwaretopology_8h.xhtml',·1,·'']]],9 ····['hardwaretopology_2eh_5',·['hardwaretopology.h',·['../hardwaretopology_8h.xhtml',·1,·'']]],
10 ····['hashedmap_2ecpp_6',·['hashedmap.cpp',·['../hashedmap_8cpp.xhtml',·1,·'']]],10 ····['hashedmap_2ecpp_6',·['hashedmap.cpp',·['../hashedmap_8cpp.xhtml',·1,·'']]],
11 ····['hashedmap_2eh_7',·['hashedmap.h',·['../hashedmap_8h.xhtml',·1,·'']]],11 ····['hashedmap_2eh_7',·['hashedmap.h',·['../hashedmap_8h.xhtml',·1,·'']]],
12 ····['hbond_2ecpp_8',·['hbond.cpp',·['../tests_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)'],12 ····['hbond_2ecpp_8',·['hbond.cpp',·['../tests_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)'],
13 ········['../modules_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)']13 ········['../modules_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)']
14 ····]],14 ····]],
15 ····['hbond_2eh_9',·['hbond.h',·['../hbond_8h.xhtml',·1,·'']]],15 ····['hbond_2eh_9',·['hbond.h',·['../hbond_8h.xhtml',·1,·'']]],
16 ····['helpformat_2ecpp_10',·['helpformat.cpp',·['../tests_2helpformat_8cpp.xhtml',·1,·'(Global·Namespace)'],16 ····['helpformat_2ecpp_10',·['helpformat.cpp',·['../helpformat_8cpp.xhtml',·1,·'(Global·Namespace)'],
17 ········['../helpformat_8cpp.xhtml',·1,·'(Global·Namespace)']17 ········['../tests_2helpformat_8cpp.xhtml',·1,·'(Global·Namespace)']
18 ····]],18 ····]],
19 ····['helpformat_2eh_11',·['helpformat.h',·['../helpformat_8h.xhtml',·1,·'']]],19 ····['helpformat_2eh_11',·['helpformat.h',·['../helpformat_8h.xhtml',·1,·'']]],
20 ····['helpmanager_2ecpp_12',·['helpmanager.cpp',·['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],20 ····['helpmanager_2ecpp_12',·['helpmanager.cpp',·['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
21 ········['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']21 ········['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
22 ····]],22 ····]],
23 ····['helpmanager_2eh_13',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]],23 ····['helpmanager_2eh_13',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]],
24 ····['helptopic_2ecpp_14',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]],24 ····['helptopic_2ecpp_14',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]],
25 ····['helptopic_2eh_15',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],25 ····['helptopic_2eh_15',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],
26 ····['helpwritercontext_2ecpp_16',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],26 ····['helpwritercontext_2ecpp_16',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],
27 ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']27 ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']
28 ····]],28 ····]],
29 ····['helpwritercontext_2eh_17',·['helpwritercontext.h',·['../helpwritercontext_8h.xhtml',·1,·'']]],29 ····['helpwritercontext_2eh_17',·['helpwritercontext.h',·['../helpwritercontext_8h.xhtml',·1,·'']]],
30 ····['helpwriting_2ecpp_18',·['helpwriting.cpp',·['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],30 ····['helpwriting_2ecpp_18',·['helpwriting.cpp',·['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],
31 ········['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']31 ········['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['histogram_2ecpp_19',·['histogram.cpp',·['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'],33 ····['histogram_2ecpp_19',·['histogram.cpp',·['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'],
34 ········['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)']34 ········['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)']
35 ····]],35 ····]],
36 ····['histogram_2eh_20',·['histogram.h',·['../histogram_8h.xhtml',·1,·'']]],36 ····['histogram_2eh_20',·['histogram.h',·['../histogram_8h.xhtml',·1,·'']]],
37 ····['histogramsize_2ecpp_21',·['histogramsize.cpp',·['../histogramsize_8cpp.xhtml',·1,·'']]],37 ····['histogramsize_2ecpp_21',·['histogramsize.cpp',·['../histogramsize_8cpp.xhtml',·1,·'']]],
38 ····['histogramsize_2eh_22',·['histogramsize.h',·['../histogramsize_8h.xhtml',·1,·'']]],38 ····['histogramsize_2eh_22',·['histogramsize.h',·['../histogramsize_8h.xhtml',·1,·'']]],
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3 ····['makebondedlinks_2ecpp_1',·['makebondedlinks.cpp',·['../makebondedlinks_8cpp.xhtml',·1,·'']]],3 ····['makebondedlinks_2ecpp_1',·['makebondedlinks.cpp',·['../makebondedlinks_8cpp.xhtml',·1,·'']]],
4 ····['makebondedlinks_2eh_2',·['makebondedlinks.h',·['../makebondedlinks_8h.xhtml',·1,·'']]],4 ····['makebondedlinks_2eh_2',·['makebondedlinks.h',·['../makebondedlinks_8h.xhtml',·1,·'']]],
5 ····['makeconstraints_2eh_3',·['makeconstraints.h',·['../makeconstraints_8h.xhtml',·1,·'']]],5 ····['makeconstraints_2eh_3',·['makeconstraints.h',·['../makeconstraints_8h.xhtml',·1,·'']]],
6 ····['manage_5fthreading_2ecpp_4',·['manage_threading.cpp',·['../manage__threading_8cpp.xhtml',·1,·'']]],6 ····['manage_5fthreading_2ecpp_4',·['manage_threading.cpp',·['../manage__threading_8cpp.xhtml',·1,·'']]],
7 ····['manage_5fthreading_2eh_5',·['manage_threading.h',·['../manage__threading_8h.xhtml',·1,·'']]],7 ····['manage_5fthreading_2eh_5',·['manage_threading.h',·['../manage__threading_8h.xhtml',·1,·'']]],
8 ····['manager_2ecpp_6',·['manager.cpp',·['../manager_8cpp.xhtml',·1,·'']]],8 ····['manager_2ecpp_6',·['manager.cpp',·['../manager_8cpp.xhtml',·1,·'']]],
9 ····['manager_2eh_7',·['manager.h',·['../manager_8h.xhtml',·1,·'']]],9 ····['manager_2eh_7',·['manager.h',·['../manager_8h.xhtml',·1,·'']]],
10 ····['manyautocorrelation_2ecpp_8',·['manyautocorrelation.cpp',·['../tests_2manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)'],10 ····['manyautocorrelation_2ecpp_8',·['manyautocorrelation.cpp',·['../manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)'],
11 ········['../manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)']11 ········['../tests_2manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)']
12 ····]],12 ····]],
13 ····['manyautocorrelation_2eh_9',·['manyautocorrelation.h',·['../manyautocorrelation_8h.xhtml',·1,·'']]],13 ····['manyautocorrelation_2eh_9',·['manyautocorrelation.h',·['../manyautocorrelation_8h.xhtml',·1,·'']]],
14 ····['matrix_2ecpp_10',·['matrix.cpp',·['../math_2tests_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)'],14 ····['matrix_2ecpp_10',·['matrix.cpp',·['../math_2tests_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)'],
15 ········['../math_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)']15 ········['../math_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)']
16 ····]],16 ····]],
17 ····['matrix_2eh_11',·['matrix.h',·['../math_2include_2gromacs_2math_2matrix_8h.xhtml',·1,·'']]],17 ····['matrix_2eh_11',·['matrix.h',·['../math_2include_2gromacs_2math_2matrix_8h.xhtml',·1,·'']]],
18 ····['md_2ecpp_12',·['md.cpp',·['../md_8cpp.xhtml',·1,·'']]],18 ····['md_2ecpp_12',·['md.cpp',·['../md_8cpp.xhtml',·1,·'']]],
Offset 30, 16 lines modifiedOffset 30, 16 lines modified
30 ····['mdrun_5fmain_2eh_24',·['mdrun_main.h',·['../mdrun__main_8h.xhtml',·1,·'']]],30 ····['mdrun_5fmain_2eh_24',·['mdrun_main.h',·['../mdrun__main_8h.xhtml',·1,·'']]],
31 ····['mdrunoptions_2eh_25',·['mdrunoptions.h',·['../mdrunoptions_8h.xhtml',·1,·'']]],31 ····['mdrunoptions_2eh_25',·['mdrunoptions.h',·['../mdrunoptions_8h.xhtml',·1,·'']]],
32 ····['mdsetup_2eh_26',·['mdsetup.h',·['../mdsetup_8h.xhtml',·1,·'']]],32 ····['mdsetup_2eh_26',·['mdsetup.h',·['../mdsetup_8h.xhtml',·1,·'']]],
33 ····['mdspan_2ecpp_27',·['mdspan.cpp',·['../mdspan_8cpp.xhtml',·1,·'']]],33 ····['mdspan_2ecpp_27',·['mdspan.cpp',·['../mdspan_8cpp.xhtml',·1,·'']]],
34 ····['mdspan_2eh_28',·['mdspan.h',·['../mdspan_8h.xhtml',·1,·'']]],34 ····['mdspan_2eh_28',·['mdspan.h',·['../mdspan_8h.xhtml',·1,·'']]],
35 ····['mempool_2ecpp_29',·['mempool.cpp',·['../mempool_8cpp.xhtml',·1,·'']]],35 ····['mempool_2ecpp_29',·['mempool.cpp',·['../mempool_8cpp.xhtml',·1,·'']]],
36 ····['mempool_2eh_30',·['mempool.h',·['../mempool_8h.xhtml',·1,·'']]],36 ····['mempool_2eh_30',·['mempool.h',·['../mempool_8h.xhtml',·1,·'']]],
37 ····['message_5fstring_5fcollector_2ecpp_31',·['message_string_collector.cpp',·['../message__string__collector_8cpp.xhtml',·1,·'(Global·Namespace)'],37 ····['message_5fstring_5fcollector_2ecpp_31',·['message_string_collector.cpp',·['../tests_2message__string__collector_8cpp.xhtml',·1,·'(Global·Namespace)'],
38 ········['../tests_2message__string__collector_8cpp.xhtml',·1,·'(Global·Namespace)']38 ········['../message__string__collector_8cpp.xhtml',·1,·'(Global·Namespace)']
39 ····]],39 ····]],
40 ····['message_5fstring_5fcollector_2eh_32',·['message_string_collector.h',·['../message__string__collector_8h.xhtml',·1,·'']]],40 ····['message_5fstring_5fcollector_2eh_32',·['message_string_collector.h',·['../message__string__collector_8h.xhtml',·1,·'']]],
41 ····['mimic_2ecpp_33',·['mimic.cpp',·['../gromacs_2mdrun_2mimic_8cpp.xhtml',·1,·'(Global·Namespace)'],41 ····['mimic_2ecpp_33',·['mimic.cpp',·['../gromacs_2mdrun_2mimic_8cpp.xhtml',·1,·'(Global·Namespace)'],
42 ········['../programs_2mdrun_2tests_2mimic_8cpp.xhtml',·1,·'(Global·Namespace)']42 ········['../programs_2mdrun_2tests_2mimic_8cpp.xhtml',·1,·'(Global·Namespace)']
43 ····]],43 ····]],
44 ····['minimize_2ecpp_34',·['minimize.cpp',·['../gromacs_2mdrun_2minimize_8cpp.xhtml',·1,·'(Global·Namespace)'],44 ····['minimize_2ecpp_34',·['minimize.cpp',·['../gromacs_2mdrun_2minimize_8cpp.xhtml',·1,·'(Global·Namespace)'],
45 ········['../programs_2mdrun_2tests_2minimize_8cpp.xhtml',·1,·'(Global·Namespace)']45 ········['../programs_2mdrun_2tests_2minimize_8cpp.xhtml',·1,·'(Global·Namespace)']
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65 ····['mpi_5fprinter_2eh_49',·['mpi_printer.h',·['../mpi__printer_8h.xhtml',·1,·'']]],65 ····['mpi_5fprinter_2eh_49',·['mpi_printer.h',·['../mpi__printer_8h.xhtml',·1,·'']]],
66 ····['mpitest_2ecpp_50',·['mpitest.cpp',·['../mpitest_8cpp.xhtml',·1,·'(Global·Namespace)'],66 ····['mpitest_2ecpp_50',·['mpitest.cpp',·['../mpitest_8cpp.xhtml',·1,·'(Global·Namespace)'],
67 ········['../tests_2mpitest_8cpp.xhtml',·1,·'(Global·Namespace)']67 ········['../tests_2mpitest_8cpp.xhtml',·1,·'(Global·Namespace)']
68 ····]],68 ····]],
69 ····['mpitest_2eh_51',·['mpitest.h',·['../mpitest_8h.xhtml',·1,·'']]],69 ····['mpitest_2eh_51',·['mpitest.h',·['../mpitest_8h.xhtml',·1,·'']]],
70 ····['mrcdensitymap_2ecpp_52',·['mrcdensitymap.cpp',·['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],70 ····['mrcdensitymap_2ecpp_52',·['mrcdensitymap.cpp',·['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],
71 ········['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']71 ········['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']
72 ····]],72 ····]],
73 ····['mrcdensitymap_2eh_53',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],73 ····['mrcdensitymap_2eh_53',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],
74 ····['mrcdensitymapheader_2ecpp_54',·['mrcdensitymapheader.cpp',·['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],74 ····['mrcdensitymapheader_2ecpp_54',·['mrcdensitymapheader.cpp',·['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],
75 ········['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)']75 ········['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)']
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77 ····['mrcdensitymapheader_2eh_55',·['mrcdensitymapheader.h',·['../mrcdensitymapheader_8h.xhtml',·1,·'']]],77 ····['mrcdensitymapheader_2eh_55',·['mrcdensitymapheader.h',·['../mrcdensitymapheader_8h.xhtml',·1,·'']]],
78 ····['mrcserializer_2ecpp_56',·['mrcserializer.cpp',·['../mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)'],78 ····['mrcserializer_2ecpp_56',·['mrcserializer.cpp',·['../mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)'],
79 ········['../tests_2mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)']79 ········['../tests_2mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)']
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81 ····['mrcserializer_2eh_57',·['mrcserializer.h',·['../mrcserializer_8h.xhtml',·1,·'']]],81 ····['mrcserializer_2eh_57',·['mrcserializer.h',·['../mrcserializer_8h.xhtml',·1,·'']]],
82 ····['msd_2ecpp_58',·['msd.cpp',·['../modules_2msd_8cpp.xhtml',·1,·'(Global·Namespace)'],82 ····['msd_2ecpp_58',·['msd.cpp',·['../modules_2msd_8cpp.xhtml',·1,·'(Global·Namespace)'],
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147 ····['printtime_2eh_129',·['printtime.h',·['../printtime_8h.xhtml',·1,·'']]],147 ····['printtime_2eh_129',·['printtime.h',·['../printtime_8h.xhtml',·1,·'']]],
148 ····['programcontext_2ecpp_130',·['programcontext.cpp',·['../programcontext_8cpp.xhtml',·1,·'']]],148 ····['programcontext_2ecpp_130',·['programcontext.cpp',·['../programcontext_8cpp.xhtml',·1,·'']]],
149 ····['programcontext_2eh_131',·['programcontext.h',·['../programcontext_8h.xhtml',·1,·'']]],149 ····['programcontext_2eh_131',·['programcontext.h',·['../programcontext_8h.xhtml',·1,·'']]],
150 ····['propagator_2ecpp_132',·['propagator.cpp',·['../propagator_8cpp.xhtml',·1,·'']]],150 ····['propagator_2ecpp_132',·['propagator.cpp',·['../propagator_8cpp.xhtml',·1,·'']]],
151 ····['propagator_2eh_133',·['propagator.h',·['../propagator_8h.xhtml',·1,·'']]],151 ····['propagator_2eh_133',·['propagator.h',·['../propagator_8h.xhtml',·1,·'']]],
152 ····['pull_2ecpp_134',·['pull.cpp',·['../programs_2mdrun_2tests_2pull_8cpp.xhtml',·1,·'(Global·Namespace)'],152 ····['pull_2ecpp_134',·['pull.cpp',·['../gromacs_2pulling_2tests_2pull_8cpp.xhtml',·1,·'(Global·Namespace)'],
153 ········['../gromacs_2pulling_2tests_2pull_8cpp.xhtml',·1,·'(Global·Namespace)']153 ········['../programs_2mdrun_2tests_2pull_8cpp.xhtml',·1,·'(Global·Namespace)']
154 ····]],154 ····]],
155 ····['pull_2eh_135',·['pull.h',·['../pull_8h.xhtml',·1,·'']]],155 ····['pull_2eh_135',·['pull.h',·['../pull_8h.xhtml',·1,·'']]],
156 ····['pull_5finternal_2eh_136',·['pull_internal.h',·['../pull__internal_8h.xhtml',·1,·'']]],156 ····['pull_5finternal_2eh_136',·['pull_internal.h',·['../pull__internal_8h.xhtml',·1,·'']]],
157 ····['pull_5fparams_2eh_137',·['pull_params.h',·['../pull__params_8h.xhtml',·1,·'']]],157 ····['pull_5fparams_2eh_137',·['pull_params.h',·['../pull__params_8h.xhtml',·1,·'']]],
158 ····['pull_5frotation_2ecpp_138',·['pull_rotation.cpp',·['../programs_2mdrun_2tests_2pull__rotation_8cpp.xhtml',·1,·'']]],158 ····['pull_5frotation_2ecpp_138',·['pull_rotation.cpp',·['../programs_2mdrun_2tests_2pull__rotation_8cpp.xhtml',·1,·'']]],
159 ····['pull_5frotation_2eh_139',·['pull_rotation.h',·['../pull__rotation_8h.xhtml',·1,·'']]],159 ····['pull_5frotation_2eh_139',·['pull_rotation.h',·['../pull__rotation_8h.xhtml',·1,·'']]],
160 ····['pullcoordexpressionparser_2eh_140',·['pullcoordexpressionparser.h',·['../pullcoordexpressionparser_8h.xhtml',·1,·'']]],160 ····['pullcoordexpressionparser_2eh_140',·['pullcoordexpressionparser.h',·['../pullcoordexpressionparser_8h.xhtml',·1,·'']]],
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12 ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']12 ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']
13 ····]],13 ····]],
14 ····['qmmminputgenerator_2eh_6',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],14 ····['qmmminputgenerator_2eh_6',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],
15 ····['qmmmoptions_2ecpp_7',·['qmmmoptions.cpp',·['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],15 ····['qmmmoptions_2ecpp_7',·['qmmmoptions.cpp',·['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
16 ········['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']16 ········['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
17 ····]],17 ····]],
18 ····['qmmmoptions_2eh_8',·['qmmmoptions.h',·['../qmmmoptions_8h.xhtml',·1,·'']]],18 ····['qmmmoptions_2eh_8',·['qmmmoptions.h',·['../qmmmoptions_8h.xhtml',·1,·'']]],
19 ····['qmmmtopologypreprocessor_2ecpp_9',·['qmmmtopologypreprocessor.cpp',·['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],19 ····['qmmmtopologypreprocessor_2ecpp_9',·['qmmmtopologypreprocessor.cpp',·['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
20 ········['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']20 ········['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
21 ····]],21 ····]],
22 ····['qmmmtopologypreprocessor_2eh_10',·['qmmmtopologypreprocessor.h',·['../qmmmtopologypreprocessor_8h.xhtml',·1,·'']]],22 ····['qmmmtopologypreprocessor_2eh_10',·['qmmmtopologypreprocessor.h',·['../qmmmtopologypreprocessor_8h.xhtml',·1,·'']]],
23 ····['qmmmtypes_2eh_11',·['qmmmtypes.h',·['../qmmmtypes_8h.xhtml',·1,·'']]],23 ····['qmmmtypes_2eh_11',·['qmmmtypes.h',·['../qmmmtypes_8h.xhtml',·1,·'']]],
24 ····['quadraticsplinetable_2ecpp_12',·['quadraticsplinetable.cpp',·['../quadraticsplinetable_8cpp.xhtml',·1,·'']]],24 ····['quadraticsplinetable_2ecpp_12',·['quadraticsplinetable.cpp',·['../quadraticsplinetable_8cpp.xhtml',·1,·'']]],
25 ····['quadraticsplinetable_2eh_13',·['quadraticsplinetable.h',·['../quadraticsplinetable_8h.xhtml',·1,·'']]]25 ····['quadraticsplinetable_2eh_13',·['quadraticsplinetable.h',·['../quadraticsplinetable_8h.xhtml',·1,·'']]]
26 ];26 ];
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Offset 549, 16 lines modifiedOffset 549, 16 lines modified
549 ····['simd_20preprocessor_20macros_352',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]],549 ····['simd_20preprocessor_20macros_352',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]],
550 ····['simd_2eh_353',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]],550 ····['simd_2eh_353',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]],
551 ····['simd4_20implementation_354',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]],551 ····['simd4_20implementation_354',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]],
552 ····['simd4bool_355',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]],552 ····['simd4bool_355',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]],
553 ····['simd4dbool_356',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()'],553 ····['simd4dbool_356',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()'],
554 ········['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool']554 ········['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool']
555 ····]],555 ····]],
 556 ····['simd4double_357',·['simd4double',·['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double'],
556 ····['simd4double_357',·['simd4double',·['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()'],557 ········['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()']
557 ········['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double'] 
558 ····]],558 ····]],
559 ····['simd4fbool_358',·['simd4fbool',·['../classgmx_1_1Simd4FBool.xhtml#ad64754cbb774d9cab1ed08c49a6e28bc',·1,·'gmx::Simd4FBool::Simd4FBool()'],559 ····['simd4fbool_358',·['simd4fbool',·['../classgmx_1_1Simd4FBool.xhtml#ad64754cbb774d9cab1ed08c49a6e28bc',·1,·'gmx::Simd4FBool::Simd4FBool()'],
560 ········['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool']560 ········['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool']
561 ····]],561 ····]],
562 ····['simd4float_359',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'],562 ····['simd4float_359',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'],
563 ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float']563 ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float']
564 ····]],564 ····]],
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Offset 25, 16 lines modifiedOffset 25, 16 lines modified
25 ····['unitcelltype_17',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],25 ····['unitcelltype_17',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
26 ····['unitcelltypenames_18',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],26 ····['unitcelltypenames_18',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
27 ····['unitvector_19',·['unitvector',·['../namespacegmx.xhtml#a5bc71ede59923e4d25b11a995139970a',·1,·'gmx::unitVector()'],27 ····['unitvector_19',·['unitvector',·['../namespacegmx.xhtml#a5bc71ede59923e4d25b11a995139970a',·1,·'gmx::unitVector()'],
28 ········['../classgmx_1_1BasicVector.xhtml#a4e7218ba6cbb3bc735e31a43597ec7a9',·1,·'gmx::BasicVector::unitVector()']28 ········['../classgmx_1_1BasicVector.xhtml#a4e7218ba6cbb3bc735e31a43597ec7a9',·1,·'gmx::BasicVector::unitVector()']
29 ····]],29 ····]],
30 ····['unity_20',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],30 ····['unity_20',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],
31 ····['unknown_21',·['unknown',·['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h'],31 ····['unknown_21',·['unknown',·['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h'],
 32 ········['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown'],
32 ········['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'],33 ········['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown']
33 ········['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown'] 
34 ····]],34 ····]],
35 ····['unpackrecvbufkernel_22',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],35 ····['unpackrecvbufkernel_22',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],
36 ····['unpaddedarrayref_23',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],36 ····['unpaddedarrayref_23',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],
37 ····['unpaddedconstarrayref_24',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],37 ····['unpaddedconstarrayref_24',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],
38 ····['unset_25',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],38 ····['unset_25',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],
39 ····['unsignedchartostring_26',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],39 ····['unsignedchartostring_26',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],
40 ····['update_27',·['update',·['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'],40 ····['update_27',·['update',·['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'],
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Offset 72347, 14 lines modifiedOffset 72347, 20 lines modified
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72348 ······<name>main</name>72348 ······<name>main</name>
72349 ····</member>72349 ····</member>
72350 ··</compound>72350 ··</compound>
72351 ··<compound·refid="abstractdata_8cpp"·kind="file">72351 ··<compound·refid="abstractdata_8cpp"·kind="file">
72352 ····<name>abstractdata.cpp</name>72352 ····<name>abstractdata.cpp</name>
72353 ··</compound>72353 ··</compound>
 72354 ··<compound·refid="arraydata_8cpp"·kind="file">
 72355 ····<name>arraydata.cpp</name>
 72356 ··</compound>
 72357 ··<compound·refid="tests_2arraydata_8cpp"·kind="file">
 72358 ····<name>arraydata.cpp</name>
 72359 ··</compound>
72354 ··<compound·refid="dataframe_8cpp"·kind="file">72360 ··<compound·refid="dataframe_8cpp"·kind="file">
72355 ····<name>dataframe.cpp</name>72361 ····<name>dataframe.cpp</name>
72356 ··</compound>72362 ··</compound>
72357 ··<compound·refid="datamodule_8cpp"·kind="file">72363 ··<compound·refid="datamodule_8cpp"·kind="file">
72358 ····<name>datamodule.cpp</name>72364 ····<name>datamodule.cpp</name>
72359 ··</compound>72365 ··</compound>
72360 ··<compound·refid="datamodulemanager_8cpp"·kind="file">72366 ··<compound·refid="datamodulemanager_8cpp"·kind="file">
Offset 72413, 20 lines modifiedOffset 72419, 14 lines modified
72413 ··</compound>72419 ··</compound>
72414 ··<compound·refid="analysisdata_8cpp"·kind="file">72420 ··<compound·refid="analysisdata_8cpp"·kind="file">
72415 ····<name>analysisdata.cpp</name>72421 ····<name>analysisdata.cpp</name>
72416 ··</compound>72422 ··</compound>
72417 ··<compound·refid="tests_2analysisdata_8cpp"·kind="file">72423 ··<compound·refid="tests_2analysisdata_8cpp"·kind="file">
72418 ····<name>analysisdata.cpp</name>72424 ····<name>analysisdata.cpp</name>
72419 ··</compound>72425 ··</compound>
72420 ··<compound·refid="arraydata_8cpp"·kind="file"> 
72421 ····<name>arraydata.cpp</name> 
72422 ··</compound> 
72423 ··<compound·refid="tests_2arraydata_8cpp"·kind="file"> 
72424 ····<name>arraydata.cpp</name> 
72425 ··</compound> 
72426 ··<compound·refid="datatest_8cpp"·kind="file">72426 ··<compound·refid="datatest_8cpp"·kind="file">
72427 ····<name>datatest.cpp</name>72427 ····<name>datatest.cpp</name>
72428 ··</compound>72428 ··</compound>
72429 ··<compound·refid="datatest_8h"·kind="file">72429 ··<compound·refid="datatest_8h"·kind="file">
72430 ····<name>datatest.h</name>72430 ····<name>datatest.h</name>
72431 ··</compound>72431 ··</compound>
72432 ··<compound·refid="mock__datamodule_8cpp"·kind="file">72432 ··<compound·refid="mock__datamodule_8cpp"·kind="file">
Offset 72437, 26 lines modifiedOffset 72437, 38 lines modified
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72439 ····<name>awh.cpp</name>72439 ····<name>awh.cpp</name>
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72441 ··<compound·refid="awh_8h"·kind="file">72441 ··<compound·refid="awh_8h"·kind="file">
72442 ····<name>awh.h</name>72442 ····<name>awh.h</name>
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 72445 ····<name>bias.cpp</name>
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 72447 ··<compound·refid="tests_2bias_8cpp"·kind="file">
 72448 ····<name>bias.cpp</name>
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72444 ··<compound·refid="bias_8h"·kind="file">72450 ··<compound·refid="bias_8h"·kind="file">
72445 ····<name>bias.h</name>72451 ····<name>bias.h</name>
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72447 ··<compound·refid="biasgrid_8h"·kind="file">72453 ··<compound·refid="biasgrid_8h"·kind="file">
72448 ····<name>biasgrid.h</name>72454 ····<name>biasgrid.h</name>
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72450 ··<compound·refid="biasparams_8cpp"·kind="file">72456 ··<compound·refid="biasparams_8cpp"·kind="file">
72451 ····<name>biasparams.cpp</name>72457 ····<name>biasparams.cpp</name>
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72453 ··<compound·refid="biasparams_8h"·kind="file">72459 ··<compound·refid="biasparams_8h"·kind="file">
72454 ····<name>biasparams.h</name>72460 ····<name>biasparams.h</name>
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 72462 ··<compound·refid="biassharing_8cpp"·kind="file">
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 72465 ··<compound·refid="tests_2biassharing_8cpp"·kind="file">
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72456 ··<compound·refid="biassharing_8h"·kind="file">72468 ··<compound·refid="biassharing_8h"·kind="file">
72457 ····<name>biassharing.h</name>72469 ····<name>biassharing.h</name>
72458 ··</compound>72470 ··</compound>
72459 ··<compound·refid="biasstate_8h"·kind="file">72471 ··<compound·refid="biasstate_8h"·kind="file">
72460 ····<name>biasstate.h</name>72472 ····<name>biasstate.h</name>
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72462 ··<compound·refid="biaswriter_8cpp"·kind="file">72474 ··<compound·refid="biaswriter_8cpp"·kind="file">
Offset 72512, 35 lines modifiedOffset 72524, 23 lines modified
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72514 ····<name>awh_setup.cpp</name>72526 ····<name>awh_setup.cpp</name>
72515 ··</compound>72527 ··</compound>
72516 ··<compound·refid="awh__setup_8h"·kind="file">72528 ··<compound·refid="awh__setup_8h"·kind="file">
72517 ····<name>awh_setup.h</name>72529 ····<name>awh_setup.h</name>
72518 ··</compound>72530 ··</compound>
72519 ··<compound·refid="bias_8cpp"·kind="file"> 
72520 ····<name>bias.cpp</name> 
72521 ··</compound> 
72522 ··<compound·refid="tests_2bias_8cpp"·kind="file"> 
72523 ····<name>bias.cpp</name> 
72524 ··</compound> 
72525 ··<compound·refid="bias__fep__lambda__state_8cpp"·kind="file">72531 ··<compound·refid="bias__fep__lambda__state_8cpp"·kind="file">
72526 ····<name>bias_fep_lambda_state.cpp</name>72532 ····<name>bias_fep_lambda_state.cpp</name>
72527 ··</compound>72533 ··</compound>
72528 ··<compound·refid="biasgrid_8cpp"·kind="file">72534 ··<compound·refid="biasgrid_8cpp"·kind="file">
72529 ····<name>biasgrid.cpp</name>72535 ····<name>biasgrid.cpp</name>
72530 ··</compound>72536 ··</compound>
72531 ··<compound·refid="tests_2biasgrid_8cpp"·kind="file">72537 ··<compound·refid="tests_2biasgrid_8cpp"·kind="file">
72532 ····<name>biasgrid.cpp</name>72538 ····<name>biasgrid.cpp</name>
72533 ··</compound>72539 ··</compound>
72534 ··<compound·refid="biassharing_8cpp"·kind="file"> 
72535 ····<name>biassharing.cpp</name> 
72536 ··</compound> 
72537 ··<compound·refid="tests_2biassharing_8cpp"·kind="file"> 
72538 ····<name>biassharing.cpp</name> 
72539 ··</compound> 
72540 ··<compound·refid="biasstate_8cpp"·kind="file">72540 ··<compound·refid="biasstate_8cpp"·kind="file">
72541 ····<name>biasstate.cpp</name>72541 ····<name>biasstate.cpp</name>
72542 ··</compound>72542 ··</compound>
72543 ··<compound·refid="tests_2biasstate_8cpp"·kind="file">72543 ··<compound·refid="tests_2biasstate_8cpp"·kind="file">
72544 ····<name>biasstate.cpp</name>72544 ····<name>biasstate.cpp</name>
72545 ··</compound>72545 ··</compound>
72546 ··<compound·refid="friction__metric_8cpp"·kind="file">72546 ··<compound·refid="friction__metric_8cpp"·kind="file">
Offset 72572, 14 lines modifiedOffset 72572, 20 lines modified
72572 ··</compound>72572 ··</compound>
72573 ··<compound·refid="colvarsMDModule_8h"·kind="file">72573 ··<compound·refid="colvarsMDModule_8h"·kind="file">
72574 ····<name>colvarsMDModule.h</name>72574 ····<name>colvarsMDModule.h</name>
72575 ··</compound>72575 ··</compound>
72576 ··<compound·refid="colvarsMDModule__stub_8cpp"·kind="file">72576 ··<compound·refid="colvarsMDModule__stub_8cpp"·kind="file">
72577 ····<name>colvarsMDModule_stub.cpp</name>72577 ····<name>colvarsMDModule_stub.cpp</name>
72578 ··</compound>72578 ··</compound>
 72579 ··<compound·refid="colvarsoptions_8cpp"·kind="file">
 72580 ····<name>colvarsoptions.cpp</name>
 72581 ··</compound>
Max diff block lines reached; 175827/180156 bytes (97.60%) of diff not shown.
⊟
1.28 KB
./usr/share/doc/gromacs/html/manual-2024.4-Debian_2024.4_1.pdf
⊟
1.16 KB
pdftotext {} -
    
Offset 17645, 15 lines modifiedOffset 17645, 15 lines modified
17645 Dimitrios·Karkoulis,·Peter·Kasson,·Sebastian·Kehl,·Sebastian·Keller,·Jiri·Kraus,·Per·Larsson,·Viveca·Lindahl,17645 Dimitrios·Karkoulis,·Peter·Kasson,·Sebastian·Kehl,·Sebastian·Keller,·Jiri·Kraus,·Per·Larsson,·Viveca·Lindahl,
17646 Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Michael·Shirts,·Alfons·Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,17646 Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Michael·Shirts,·Alfons·Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,
17647 Maarten·Wolf,·Artem·Zhmurov17647 Maarten·Wolf,·Artem·Zhmurov
17648 Project·leaders:·Berk·Hess,·Erik·Lindahl17648 Project·leaders:·Berk·Hess,·Erik·Lindahl
17649 ©·1991·–·2000:17649 ©·1991·–·2000:
17650 Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen,17650 Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen,
17651 The·Netherlands.17651 The·Netherlands.
17652 ©·2001·–·2024:17652 ©·2001·–·2026:
17653 The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University,17653 The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University,
17654 Sweden.17654 Sweden.
17655 This·manual·is·not·complete·and·has·no·pretension·to·be·so·due·to·lack·of·time·of·the·contributors·–·our·first17655 This·manual·is·not·complete·and·has·no·pretension·to·be·so·due·to·lack·of·time·of·the·contributors·–·our·first
17656 priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information17656 priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information
17657 is·not·entirely·correct.17657 is·not·entirely·correct.
17658 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer17658 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer
17659 discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·621)),·or·open·an·issue·on·our·issue17659 discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·621)),·or·open·an·issue·on·our·issue
⊟
2.13 KB
./usr/share/doc/gromacs/html/reference-manual/preface.html
    
Offset 4353, 15 lines modifiedOffset 4353, 15 lines modified
00011000:·656d·6973·7472·792c·2055·6e69·7665·7273··emistry,·Univers00011000:·656d·6973·7472·792c·2055·6e69·7665·7273··emistry,·Univers
00011010:·6974·7920·6f66·2047·726f·6e69·6e67·656e··ity·of·Groningen00011010:·6974·7920·6f66·2047·726f·6e69·6e67·656e··ity·of·Groningen
00011020:·2e0a·4e69·6a65·6e62·6f72·6768·2034·2c20··..Nijenborgh·4,·00011020:·2e0a·4e69·6a65·6e62·6f72·6768·2034·2c20··..Nijenborgh·4,·
00011030:·3937·3437·2041·4720·4772·6f6e·696e·6765··9747·AG·Groninge00011030:·3937·3437·2041·4720·4772·6f6e·696e·6765··9747·AG·Groninge
00011040:·6e2c·2054·6865·204e·6574·6865·726c·616e··n,·The·Netherlan00011040:·6e2c·2054·6865·204e·6574·6865·726c·616e··n,·The·Netherlan
00011050:·6473·2e3c·2f70·3e0a·3c2f·6469·763e·3c2f··ds.</p>.</div></00011050:·6473·2e3c·2f70·3e0a·3c2f·6469·763e·3c2f··ds.</p>.</div></
00011060:·626c·6f63·6b71·756f·7465·3e0a·3c70·3ec2··blockquote>.<p>.00011060:·626c·6f63·6b71·756f·7465·3e0a·3c70·3ec2··blockquote>.<p>.
00011070:·a920·3230·3031·20e2·8093·2032·3032·343a··.·2001·...·2024:00011070:·a920·3230·3031·20e2·8093·2032·3032·363a··.·2001·...·2026:
00011080:·3c2f·703e·0a3c·626c·6f63·6b71·756f·7465··</p>.<blockquote00011080:·3c2f·703e·0a3c·626c·6f63·6b71·756f·7465··</p>.<blockquote
00011090:·3e0a·3c64·6976·3e3c·703e·5468·6520·4752··>.<div><p>The·GR00011090:·3e0a·3c64·6976·3e3c·703e·5468·6520·4752··>.<div><p>The·GR
000110a0:·4f4d·4143·5320·6465·7665·6c6f·706d·656e··OMACS·developmen000110a0:·4f4d·4143·5320·6465·7665·6c6f·706d·656e··OMACS·developmen
000110b0:·7420·7465·616d·7320·6174·2074·6865·2052··t·teams·at·the·R000110b0:·7420·7465·616d·7320·6174·2074·6865·2052··t·teams·at·the·R
000110c0:·6f79·616c·2049·6e73·7469·7475·7465·206f··oyal·Institute·o000110c0:·6f79·616c·2049·6e73·7469·7475·7465·206f··oyal·Institute·o
000110d0:·6620·5465·6368·6e6f·6c6f·6779·2061·6e64··f·Technology·and000110d0:·6620·5465·6368·6e6f·6c6f·6779·2061·6e64··f·Technology·and
000110e0:·0a55·7070·7361·6c61·2055·6e69·7665·7273··.Uppsala·Univers000110e0:·0a55·7070·7361·6c61·2055·6e69·7665·7273··.Uppsala·Univers
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html2text {}
    
Offset 442, 15 lines modifiedOffset 442, 15 lines modified
442 Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Michael·Shirts,·Alfons·Sijbers,442 Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Michael·Shirts,·Alfons·Sijbers,
443 Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon443 Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon
444 Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov444 Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov
445 Project·leaders:·Berk·Hess,·Erik·Lindahl445 Project·leaders:·Berk·Hess,·Erik·Lindahl
446 ©·1991·–·2000:446 ©·1991·–·2000:
447 ·····Department·of·Biophysical·Chemistry,·University·of·Groningen.447 ·····Department·of·Biophysical·Chemistry,·University·of·Groningen.
448 ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands.448 ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands.
449 ©·2001·–·2024:449 ©·2001·–·2026:
450 ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology450 ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology
451 ·····and·Uppsala·University,·Sweden.451 ·····and·Uppsala·University,·Sweden.
452 This·manual·is·not·complete·and·has·no·pretension·to·be·so·due·to·lack·of·time452 This·manual·is·not·complete·and·has·no·pretension·to·be·so·due·to·lack·of·time
453 of·the·contributors·–·our·first·priority·is·to·improve·the·software.·It·is453 of·the·contributors·–·our·first·priority·is·to·improve·the·software.·It·is
454 worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not454 worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not
455 entirely·correct.455 entirely·correct.
456 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r456 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r
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4.16 KB
./usr/share/doc/gromacs/html/searchindex.js
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4.07 KB
js-beautify {}
    
Offset 10871, 15 lines modifiedOffset 10871, 15 lines modified
10871 ········"2019":·[31,·39,·194,·205,·238,·239,·240,·241,·258,·264,·265,·266,·267,·268,·281,·293,·357],10871 ········"2019":·[31,·39,·194,·205,·238,·239,·240,·241,·258,·264,·265,·266,·267,·268,·281,·293,·357],
10872 ········"2020":·[4,·11,·15,·17,·29,·39,·194,·254,·274,·280,·281,·282,·283,·284,·285,·286,·310,·334,·357],10872 ········"2020":·[4,·11,·15,·17,·29,·39,·194,·254,·274,·280,·281,·282,·283,·284,·285,·286,·310,·334,·357],
10873 ········"2021":·[39,·194,·265,·268,·269,·290,·296,·297,·298,·299,·300,·301,·310,·325,·357],10873 ········"2021":·[39,·194,·265,·268,·269,·290,·296,·297,·298,·299,·300,·301,·310,·325,·357],
10874 ········"2022":·[0,·17,·28,·29,·39,·270,·284,·285,·306,·312,·313,·314,·315,·316,·317,·326,·357],10874 ········"2022":·[0,·17,·28,·29,·39,·270,·284,·285,·306,·312,·313,·314,·315,·316,·317,·326,·357],
10875 ········"2023":·[38,·39,·123,·194,·286,·300,·301,·322,·328,·329,·330,·331,·357],10875 ········"2023":·[38,·39,·123,·194,·286,·300,·301,·322,·328,·329,·330,·331,·357],
10876 ········"2024":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·332,·333,·335,·336,·337,·338,·339,·340,·341,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357,·358,·359,·360,·361],10876 ········"2024":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·332,·333,·335,·336,·337,·338,·339,·340,·341,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357,·358,·359,·360,·361],
10877 ········"2025":·[222,·342],10877 ········"2025":·[222,·342],
10878 ········"2026":·248,10878 ········"2026":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·6[·...·truncated·by·diffoscope;·len:·1444,·SHA:·444eaffcaeaf395c7129df8a68a038146dc491c7656e03ee14928d1164a3c8aa·...·],
10879 ········"2027":·248,10879 ········"2027":·248,
10880 ········"2028":·248,10880 ········"2028":·248,
10881 ········"2029":·222,10881 ········"2029":·222,
10882 ········"2031":·241,10882 ········"2031":·241,
10883 ········"2032":·[50,·194,·241],10883 ········"2032":·[50,·194,·241],
10884 ········"2033":·222,10884 ········"2033":·222,
10885 ········"2037":·[222,·238,·249],10885 ········"2037":·[222,·238,·249],
Generated by diffoscope 283