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59 | ········['../classseqan3_1_1sam__file__output.html#af11b62d2791f8da52f44cf686e6579c0',·1,·'seqan3::sam_file_output::sam_file_output(std::filesystem::path·const·&,·ref_ids_type·&&,·ref_lengths_type·&&,·selected_field_ids·const·&)·->·sam_file_output<·selected_field_ids,·typename·sam_file_output<>::valid_formats,·std::remove_reference_t<·ref_ids_type·>·>'], | ||
58 | ···· | 60 | ········['../classseqan3_1_1sam__file__output.html#afc79827be66dc11fe25f5e7a67f92c99',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&,·file_format·const·&)·->·sam_file_output<·typename·sam_file_output<>::selected_field_ids,·type_list<·file_format·>,·ref_info_not_given·>'], |
59 | ········['../classseqan3_1_1sam__file__output.html#a6e6b84c86826f69b6e8d5d6ac8af5541',·1,·'seqan3::sam_file_output::sam_file_output(std::filesystem::path,·selected_field_ids·const·&)·->·sam_file_output<·selected_field_ids,·typename·sam_file_output<>::valid_formats,·ref_info_not_given·>'], | ||
60 | ········['../classseqan3_1_1sam__file__output.html#aa69f7d96189a3a3ac6cc0b233ec82a86',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&&,·file_format·const·&)·->·sam_file_output<·typename·sam_file_output<>::selected_field_ids,·type_list<·file_format·>,·ref_info_not_given·>'], | 61 | ········['../classseqan3_1_1sam__file__output.html#aa69f7d96189a3a3ac6cc0b233ec82a86',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&&,·file_format·const·&)·->·sam_file_output<·typename·sam_file_output<>::selected_field_ids,·type_list<·file_format·>,·ref_info_not_given·>'], |
61 | ········['../classseqan3_1_1sam__file__output.html#ad88a4de1ce5c46aae81ac07ad1e8c6c0',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&,·file_format·const·&,·selected_field_ids·const·&)·->·sam_file_output<·selected_field_ids,·type_list<·file_format·>,·ref_info_not_given·>'], | 62 | ········['../classseqan3_1_1sam__file__output.html#ad88a4de1ce5c46aae81ac07ad1e8c6c0',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&,·file_format·const·&,·selected_field_ids·const·&)·->·sam_file_output<·selected_field_ids,·type_list<·file_format·>,·ref_info_not_given·>'], |
62 | ········['../classseqan3_1_1sam__file__output.html#adad77cb637aa9a1e888a5eec9ab3322d',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&&,·file_format·const·&,·selected_field_ids·const·&)·->·sam_file_output<·selected_field_ids,·type_list<·file_format·>,·ref_info_not_given·>'], | 63 | ········['../classseqan3_1_1sam__file__output.html#adad77cb637aa9a1e888a5eec9ab3322d',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&&,·file_format·const·&,·selected_field_ids·const·&)·->·sam_file_output<·selected_field_ids,·type_list<·file_format·>,·ref_info_not_given·>'], |
64 | ········['../classseqan3_1_1sam__file__output.html#a6e6b84c86826f69b6e8d5d6ac8af5541',·1,·'seqan3::sam_file_output::sam_file_output(std::filesystem::path,·selected_field_ids·const·&)·->·sam_file_output<·selected_field_ids,·typename·sam_file_output<>::valid_formats,·ref_info_not_given·>'], | ||
63 | ········['../classseqan3_1_1sam__file__output.html#ab6e19fdf51322d9ac5824bb9f5b70bbc',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&&stream,·ref_ids_type_·&&ref_ids,·ref_lengths_type·&&ref_lengths,·file_format·const·&format_tag,·selected_field_ids·const·&fields_tag=selected_field_ids{})'], | 65 | ········['../classseqan3_1_1sam__file__output.html#ab6e19fdf51322d9ac5824bb9f5b70bbc',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&&stream,·ref_ids_type_·&&ref_ids,·ref_lengths_type·&&ref_lengths,·file_format·const·&format_tag,·selected_field_ids·const·&fields_tag=selected_field_ids{})'], |
64 | ········['../classseqan3_1_1sam__file__output.html#a65b9841105266a2dfef9daafd1b109f4',·1,·'seqan3::sam_file_output::sam_file_output(std::filesystem::path·const·&filename,·ref_ids_type_·&&ref_ids,·ref_lengths_type·&&ref_lengths,·selected_field_ids·const·&fields_tag=selected_field_ids{})'], | 66 | ········['../classseqan3_1_1sam__file__output.html#a65b9841105266a2dfef9daafd1b109f4',·1,·'seqan3::sam_file_output::sam_file_output(std::filesystem::path·const·&filename,·ref_ids_type_·&&ref_ids,·ref_lengths_type·&&ref_lengths,·selected_field_ids·const·&fields_tag=selected_field_ids{})'], |
65 | ········['../classseqan3_1_1sam__file__output.html#a | 67 | ········['../classseqan3_1_1sam__file__output.html#a113b0735dfce27d6ac095f4bdf046148',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&,·ref_ids_type·&&,·ref_lengths_type·&&,·file_format·const·&,·selected_field_ids·const·&)·->·sam_file_output<·selected_field_ids,·[·...·truncated·by·diffoscope;·len:·82,·SHA:·96d8722ab461ba8b788e1da437938e7f314bfcf07e2f30c6d8e96d8135ac1fda·...·]'], |
66 | ········['../classseqan3_1_1sam__file__output.html#a9acf2655ed86ce8f52577d2891f19d0c',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&stream,·file_format·const·&format_tag,·selected_field_ids·const·&fields_tag=selected_field_ids{})'], | 68 | ········['../classseqan3_1_1sam__file__output.html#a9acf2655ed86ce8f52577d2891f19d0c',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&stream,·file_format·const·&format_tag,·selected_field_ids·const·&fields_tag=selected_field_ids{})'], |
67 | ········['../classseqan3_1_1sam__file__output.html#aab04103f3a2eae510f6500bd7823fc47',·1,·'seqan3::sam_file_output::sam_file_output(std::filesystem::path·filename,·selected_field_ids·const·&fields_tag=selected_field_ids{})'], | 69 | ········['../classseqan3_1_1sam__file__output.html#aab04103f3a2eae510f6500bd7823fc47',·1,·'seqan3::sam_file_output::sam_file_output(std::filesystem::path·filename,·selected_field_ids·const·&fields_tag=selected_field_ids{})'], |
68 | ········['../classseqan3_1_1sam__file__output.html#ac74960d2135550f9f9337bae1f782cc1',·1,·'seqan3::sam_file_output::sam_file_output(sam_file_output·&&)=default'], | 70 | ········['../classseqan3_1_1sam__file__output.html#ac74960d2135550f9f9337bae1f782cc1',·1,·'seqan3::sam_file_output::sam_file_output(sam_file_output·&&)=default'], |
69 | ········['../classseqan3_1_1sam__file__output.html#a23c49af0c3ea9326354b01d830fb6d1f',·1,·'seqan3::sam_file_output::sam_file_output(sam_file_output·const·&)=delete'], | ||
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71 | ········['../classseqan3_1_1sam__file__output.html#a11bf92fd2ae7fdd7ee91186b5cc9169c',·1,·'seqan3::sam_file_output::sam_file_output(std::filesystem::path·const·&,·ref_ids_type·&&,·ref_lengths_type·&&)·->·sam_file_output<·typename·sam_file_output<>::selected_field_ids,·typename·sam_file_output<>::valid_formats,·std::remove_reference_t<·ref_ids_type·>·>'], | 71 | ········['../classseqan3_1_1sam__file__output.html#a11bf92fd2ae7fdd7ee91186b5cc9169c',·1,·'seqan3::sam_file_output::sam_file_output(std::filesystem::path·const·&,·ref_ids_type·&&,·ref_lengths_type·&&)·->·sam_file_output<·typename·sam_file_output<>::selected_field_ids,·typename·sam_file_output<>::valid_formats,·std::remove_reference_t<·ref_ids_type·>·>'], |
72 | ········['../classseqan3_1_1sam__file__output.html#a944fd9481b8297e63f8bfca4adf8b938',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&&,·ref_ids_type·&&,·ref_lengths_type·&&,·file_format·const·&,·selected_field_ids·const·&)·->·sam_file_output<·selected_field_ids,·type_list<·file_format·>,·std::remove_reference_t<·ref_ids_type·>·>'], | 72 | ········['../classseqan3_1_1sam__file__output.html#a944fd9481b8297e63f8bfca4adf8b938',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&&,·ref_ids_type·&&,·ref_lengths_type·&&,·file_format·const·&,·selected_field_ids·const·&)·->·sam_file_output<·selected_field_ids,·type_list<·file_format·>,·std::remove_reference_t<·ref_ids_type·>·>'], |
73 | ········['../classseqan3_1_1sam__file__output.html#a113b0735dfce27d6ac095f4bdf046148',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&,·ref_ids_type·&&,·ref_lengths_type·&&,·file_format·const·&,·selected_field_ids·const·&)·->·sam_file_output<·selected_field_ids,·type_list<·file_format·>,·std::remove_reference_t<·ref_ids_type·>·>'], | ||
74 | ········['../classseqan3_1_1sam__file__output.html#a76c052aec39abaff3af022a1bb8f039d',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&&,·ref_ids_type·&&,·ref_lengths_type·&&,·file_format·const·&)·->·sam_file_output<·typename·sam_file_output<>::selected_field_ids,·type_list<·file_format·>,·std::remove_reference_t<·ref_ids_type·>·>'], | 73 | ········['../classseqan3_1_1sam__file__output.html#a76c052aec39abaff3af022a1bb8f039d',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&&,·ref_ids_type·&&,·ref_lengths_type·&&,·file_format·const·&)·->·sam_file_output<·typename·sam_file_output<>::selected_field_ids,·type_list<·file_format·>,·std::remove_reference_t<·ref_ids_type·>·>'], |
75 | ········['../classseqan3_1_1sam__file__output.html#a01e86819d4ebd7a35149d541f0d77dcd',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&,·ref_ids_type·&&,·ref_lengths_type·&&,·file_format·const·&)·->·sam_file_output<·typename·sam_file_output<>::selected_field_ids,·type_list<·file_format·>,·std::remove_reference_t<·ref_ids_type·>·>'], | 74 | ········['../classseqan3_1_1sam__file__output.html#a01e86819d4ebd7a35149d541f0d77dcd',·1,·'seqan3::sam_file_output::sam_file_output(stream_type·&,·ref_ids_type·&&,·ref_lengths_type·&&,·file_format·const·&)·->·sam_file_output<·typename·sam_file_output<>::selected_field_ids,·type_list<·file_format·>,·std::remove_reference_t<·ref_ids_type·>·>'], |
76 | ········['../classseqan3_1_1sam__file__output.html#a | 75 | ········['../classseqan3_1_1sam__file__output.html#a23c49af0c3ea9326354b01d830fb6d1f',·1,·'seqan3::sam_file_output::sam_file_output(sam_file_output·const·&)=delete'], |
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77 | ········['../classseqan3_1_1sam__file__output.html',·1,·'seqan3::sam_file_output<·selected_field_ids_,·valid_formats_,·ref_ids_type·>'] | 77 | ········['../classseqan3_1_1sam__file__output.html',·1,·'seqan3::sam_file_output<·selected_field_ids_,·valid_formats_,·ref_ids_type·>'] |
78 | ····]], | 78 | ····]], |
79 | ····['sam_5ffile_5foutput_5fformat_24',·['sam_file_output_format',·['../classseqan3_1_1sam__file__output__format.html',·1,·'seqan3']]], | 79 | ····['sam_5ffile_5foutput_5fformat_24',·['sam_file_output_format',·['../classseqan3_1_1sam__file__output__format.html',·1,·'seqan3']]], |
80 | ····['sam_5ffile_5foutput_5foptions_25',·['sam_file_output_options',·['../structseqan3_1_1sam__file__output__options.html',·1,·'seqan3']]], | 80 | ····['sam_5ffile_5foutput_5foptions_25',·['sam_file_output_options',·['../structseqan3_1_1sam__file__output__options.html',·1,·'seqan3']]], |
81 | ····['sam_5ffile_5fprogram_5finfo_5ft_26',·['sam_file_program_info_t',·['../structseqan3_1_1sam__file__program__info__t.html',·1,·'seqan3']]], | 81 | ····['sam_5ffile_5fprogram_5finfo_5ft_26',·['sam_file_program_info_t',·['../structseqan3_1_1sam__file__program__info__t.html',·1,·'seqan3']]], |
82 | ····['sam_5fflag_27',·['sam_flag',·['../group__io__sam__file.html#ga12cf4f15e81e65c02a1a5899b75ca962',·1,·'seqan3']]], | 82 | ····['sam_5fflag_27',·['sam_flag',·['../group__io__sam__file.html#ga12cf4f15e81e65c02a1a5899b75ca962',·1,·'seqan3']]], |
83 | ····['sam_5fflag_2ehpp_28',·['sam_flag.hpp',·['../sam__flag_8hpp.html',·1,·'']]], | 83 | ····['sam_5fflag_2ehpp_28',·['sam_flag.hpp',·['../sam__flag_8hpp.html',·1,·'']]], |
84 | ····['sam_5frecord_29',·['sam_record',·['../classseqan3_1_1sam__record.html#a | 84 | ····['sam_5frecord_29',·['sam_record',·['../classseqan3_1_1sam__record.html#a8d32a79396e78c3e0622bd865fc7bad1',·1,·'seqan3::sam_record::sam_record()=default'], |
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86 | ········['../classseqan3_1_1sam__record.html#a | 86 | ········['../classseqan3_1_1sam__record.html#a90bbca3b71fa4dfe14a2af8912e59f12',·1,·'seqan3::sam_record::sam_record(sam_record·&&)=default'], |
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88 | ····]], | 88 | ····]], |
89 | ····['sam_5frecord_3c_20detail_3a_3aselect_5ftypes_5fwith_5fids_5ft_3c_20field_5ftypes_2c_20field_5fids_2c_20selected_5ffield_5fids_20_3e_2c_20selected_5ffield_5fids_20_3e_30',·['sam_record<·detail::select_types_with_ids_t<·field_types,·field_ids,·selected_field_ids·>,·selected_field_ids·>',·['../classseqan3_1_1sam__record.html',·1,·'seqan3']]], | 89 | ····['sam_5frecord_3c_20detail_3a_3aselect_5ftypes_5fwith_5fids_5ft_3c_20field_5ftypes_2c_20field_5fids_2c_20selected_5ffield_5fids_20_3e_2c_20selected_5ffield_5fids_20_3e_30',·['sam_record<·detail::select_types_with_ids_t<·field_types,·field_ids,·selected_field_ids·>,·selected_field_ids·>',·['../classseqan3_1_1sam__record.html',·1,·'seqan3']]], |
90 | ····['sam_5frequire_5fheader_31',·['sam_require_header',·['../structseqan3_1_1sam__file__output__options.html#a6fe52f5b4619b9c225d974200cd939ce',·1,·'seqan3::sam_file_output_options']]], | 90 | ····['sam_5frequire_5fheader_31',·['sam_require_header',·['../structseqan3_1_1sam__file__output__options.html#a6fe52f5b4619b9c225d974200cd939ce',·1,·'seqan3::sam_file_output_options']]], |
91 | ····['sam_5ftag_5fdictionary_32',·['sam_tag_dictionary',·['../classseqan3_1_1sam__tag__dictionary.html',·1,·'seqan3']]], | 91 | ····['sam_5ftag_5fdictionary_32',·['sam_tag_dictionary',·['../classseqan3_1_1sam__tag__dictionary.html',·1,·'seqan3']]], |
92 | ····['sam_5ftag_5fdictionary_2ehpp_33',·['sam_tag_dictionary.hpp',·['../sam__tag__dictionary_8hpp.html',·1,·'']]], | 92 | ····['sam_5ftag_5fdictionary_2ehpp_33',·['sam_tag_dictionary.hpp',·['../sam__tag__dictionary_8hpp.html',·1,·'']]], |
93 | ····['sam_5ftag_5ftype_34',·['sam_tag_type',·['../structseqan3_1_1sam__tag__type.html',·1,·'seqan3']]], | 93 | ····['sam_5ftag_5ftype_34',·['sam_tag_type',·['../structseqan3_1_1sam__tag__type.html',·1,·'seqan3']]], |
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164 | ····['scoring_5fscheme_5fbase_2ehpp_64',·['scoring_scheme_base.hpp',·['../scoring__scheme__base_8hpp.html',·1,·'']]], | 164 | ····['scoring_5fscheme_5fbase_2ehpp_64',·['scoring_scheme_base.hpp',·['../scoring__scheme__base_8hpp.html',·1,·'']]], |
165 | ····['scoring_5fscheme_5fbase_3c_20aminoacid_5fscoring_5fscheme_3c_20int8_5ft_20_3e_2c_20aa27_2c_20int8_5ft_20_3e_65',·['scoring_scheme_base<·aminoacid_scoring_scheme<·int8_t·>,·aa27,·int8_t·>',·['../classseqan3_1_1scoring__scheme__base.html',·1,·'seqan3']]], | 165 | ····['scoring_5fscheme_5fbase_3c_20aminoacid_5fscoring_5fscheme_3c_20int8_5ft_20_3e_2c_20aa27_2c_20int8_5ft_20_3e_65',·['scoring_scheme_base<·aminoacid_scoring_scheme<·int8_t·>,·aa27,·int8_t·>',·['../classseqan3_1_1scoring__scheme__base.html',·1,·'seqan3']]], |
166 | ····['scoring_5fscheme_5fbase_3c_20nucleotide_5fscoring_5fscheme_3c_20int8_5ft_20_3e_2c_20dna15_2c_20int8_5ft_20_3e_66',·['scoring_scheme_base<·nucleotide_scoring_scheme<·int8_t·>,·dna15,·int8_t·>',·['../classseqan3_1_1scoring__scheme__base.html',·1,·'seqan3']]], | 166 | ····['scoring_5fscheme_5fbase_3c_20nucleotide_5fscoring_5fscheme_3c_20int8_5ft_20_3e_2c_20dna15_2c_20int8_5ft_20_3e_66',·['scoring_scheme_base<·nucleotide_scoring_scheme<·int8_t·>,·dna15,·int8_t·>',·['../classseqan3_1_1scoring__scheme__base.html',·1,·'seqan3']]], |
167 | ····['scoring_5fscheme_5fconcept_2ehpp_67',·['scoring_scheme_concept.hpp',·['../scoring__scheme__concept_8hpp.html',·1,·'']]], | 167 | ····['scoring_5fscheme_5fconcept_2ehpp_67',·['scoring_scheme_concept.hpp',·['../scoring__scheme__concept_8hpp.html',·1,·'']]], |
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170 | ····['search_70',·['search',·['https://en.cppreference.com/w/cpp/ | 170 | ····['search_70',·['search',·['https://en.cppreference.com/w/cpp/algorithm/search.html',·0,·'std::search()'], |
171 | ········['../tutorial_index_search.html#autotoc_md190',·1,·'Search'], | 171 | ········['../tutorial_index_search.html#autotoc_md190',·1,·'Search'], |
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