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mia-tools_2.4.7-13.1~exp1_amd64.deb ¶

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57	····</p><p·class="plugin">	57	····</p><p·class="plugin">
58	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginbandpass2dimagefilter"></a>bandpass</h5></div></div></div><p·class="plugindescr">intensity·bandpass·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">max</td><td·align="center"·valign="top">float</td><td·align="center"·valign="top">3.40282e+38</td><td·align="left"·valign="top">maximum·of·the·band</td></tr><tr><td·align="center"·valign="top">min</td><td·align="center"·valign="top">float</td><td·align="center"·valign="top">0</td><td·align="left"·valign="top">minimum·of·the·band</td></tr></tbody></table></div></div><p·class="plugin">	58	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginbandpass2dimagefilter"></a>bandpass</h5></div></div></div><p·class="plugindescr">intensity·bandpass·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">max</td><td·align="center"·valign="top">float</td><td·align="center"·valign="top">3.40282e+38</td><td·align="left"·valign="top">maximum·of·the·band</td></tr><tr><td·align="center"·valign="top">min</td><td·align="center"·valign="top">float</td><td·align="center"·valign="top">0</td><td·align="left"·valign="top">minimum·of·the·band</td></tr></tbody></table></div></div><p·class="plugin">
59	····</p><p·class="plugin">	59	····</p><p·class="plugin">
60	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginbinarize2dimagefilter"></a>binarize</h5></div></div></div><p·class="plugindescr">image·binarize·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">max</td><td·align="center"·valign="top">float</td><td·align="center"·valign="top">3.40282e+38</td><td·align="left"·valign="top">maximum·of·accepted·range</td></tr><tr><td·align="center"·valign="top">min</td><td·align="center"·valign="top">float</td><td·align="center"·valign="top">0</td><td·align="left"·valign="top">minimum·of·accepted·range</td></tr></tbody></table></div></div><p·class="plugin">	60	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginbinarize2dimagefilter"></a>binarize</h5></div></div></div><p·class="plugindescr">image·binarize·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">max</td><td·align="center"·valign="top">float</td><td·align="center"·valign="top">3.40282e+38</td><td·align="left"·valign="top">maximum·of·accepted·range</td></tr><tr><td·align="center"·valign="top">min</td><td·align="center"·valign="top">float</td><td·align="center"·valign="top">0</td><td·align="left"·valign="top">minimum·of·accepted·range</td></tr></tbody></table></div></div><p·class="plugin">
61	····</p><p·class="plugin">	61	····</p><p·class="plugin">
62	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginclose2dimagefilter"></a>close</h5></div></div></div><p·class="plugindescr">morphological·close.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">hint</td><td·align="center"·valign="top">set</td><td·align="center"·valign="top">black</td><td·align="left"·valign="top">a·hint·at·the·main·image·content·Supported·values·are:(black,·white,·)</td></tr><tr><td·align="center"·valign="top">shape</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">[sphere:r=2]</td><td·align="left"·valign="top">structuring·element.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype2dimageshape.html"·title="Plugin·type:·2dimage/shape">Plugin·type:·2dimage/shape</a></td></tr></tbody></table></div></div><p·class="plugin">	62	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginclose2dimagefilter"></a>close</h5></div></div></div><p·class="plugindescr">morphological·close.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">hint</td><td·align="center"·valign="top">set</td><td·align="center"·valign="top">black</td><td·align="left"·valign="top">a·hint·at·the·main·image·content·Supported·values·are:(black,·white,·)</td></tr><tr><td·align="center"·valign="top">shape</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">[sphere:r=2]</td><td·align="left"·valign="top">structuring·element.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype2dimageshape.html"·title="Plugin·type:·2dimage/shape">Plugin·type:·2dimage/shape</a></td></tr></tbody></table></div></div><p·class="plugin">
63	····</p><p·class="plugin">	63	····</p><p·class="plugin">
64	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="plugincombiner2dimagefilter"></a>combiner</h5></div></div></div><p·class="plugindescr">Combine·two·images·with·the·given·combiner·operator.·if·'reverse'·is·set·to·false,·the·first·operator·is·the·image·passed·through·the·filter·pipeline,·and·the·second·image·is·loaded·from·the·file·given·with·the·'image'·parameter·the·moment·the·filter·is·run..·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">image</td><td·align="center"·valign="top">io</td><td·align="center"·valign="top">(~~req~~uired,in~~put~~)</td><td·align="left"·valign="top">second·image·that·is·needed·in·the·combiner.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></td></tr><tr><td·align="center"·valign="top">op</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">(required)</td><td·align="left"·valign="top">Image·combiner·to·be·applied·to·the·images.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype2dimagecombiner.html"·title="Plugin·type:·2dimage/combiner">Plugin·type:·2dimage/combiner</a></td></tr><tr><td·align="center"·valign="top">reverse</td><td·align="center"·valign="top">bool</td><td·align="center"·valign="top">0</td><td·align="left"·valign="top">reverse·the·order·in·which·the·images·passed·to·the·combiner</td></tr></tbody></table></div></div><p·class="plugin">	64	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="plugincombiner2dimagefilter"></a>combiner</h5></div></div></div><p·class="plugindescr">Combine·two·images·with·the·given·combiner·operator.·if·'reverse'·is·set·to·false,·the·first·operator·is·the·image·passed·through·the·filter·pipeline,·and·the·second·image·is·loaded·from·the·file·given·with·the·'image'·parameter·the·moment·the·filter·is·run..·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">image</td><td·align="center"·valign="top">io</td><td·align="center"·valign="top">(input,required)</td><td·align="left"·valign="top">second·image·that·is·needed·in·the·combiner.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></td></tr><tr><td·align="center"·valign="top">op</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">(required)</td><td·align="left"·valign="top">Image·combiner·to·be·applied·to·the·images.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype2dimagecombiner.html"·title="Plugin·type:·2dimage/combiner">Plugin·type:·2dimage/combiner</a></td></tr><tr><td·align="center"·valign="top">reverse</td><td·align="center"·valign="top">bool</td><td·align="center"·valign="top">0</td><td·align="left"·valign="top">reverse·the·order·in·which·the·images·passed·to·the·combiner</td></tr></tbody></table></div></div><p·class="plugin">
65	····</p><p·class="plugin">	65	····</p><p·class="plugin">
66	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginconvert2dimagefilter"></a>convert</h5></div></div></div><p·class="plugindescr">image·pixel·format·conversion·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">a</td><td·align="center"·valign="top">float</td><td·align="center"·valign="top">1</td><td·align="left"·valign="top">linear·conversion·parameter·a</td></tr><tr><td·align="center"·valign="top">b</td><td·align="center"·valign="top">float</td><td·align="center"·valign="top">0</td><td·align="left"·valign="top">linear·conversion·parameter·b</td></tr><tr><td·align="center"·valign="top">map</td><td·align="center"·valign="top">dict</td><td·align="center"·valign="top">opt</td><td><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·class="sc0"><col·class="sc1"></colgroup><tbody><tr><td·colspan="2"·align="left"·valign="top">conversion·mapping</td></tr><tr><td·align="left"·valign="top">copy:</td><td·align="left"·valign="top">copy·data·when·converting</td></tr><tr><td·align="left"·valign="top">linear:</td><td·align="left"·valign="top">apply·linear·transformation·x·->·a*x+b</td></tr><tr><td·align="left"·valign="top">range:</td><td·align="left"·valign="top">apply·linear·transformation·that·maps·the·input·data·type·range·to·the·output·data·type·range</td></tr><tr><td·align="left"·valign="top">opt:</td><td·align="left"·valign="top">apply·a·linear·transformation·that·maps·the·real·input·range·to·the·full·output·range</td></tr><tr><td·align="left"·valign="top">optstat:</td><td·align="left"·valign="top">apply·a·linear·transform·that·maps·based·on·input·mean·and·variation·to·the·full·output·range</td></tr></tbody></table></div></td></tr><tr><td·align="center"·valign="top">repn</td><td·align="center"·valign="top">dict</td><td·align="center"·valign="top">ubyte</td><td><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·class="sc0"><col·class="sc1"></colgroup><tbody><tr><td·colspan="2"·align="left"·valign="top">output·pixel·type</td></tr><tr><td·align="left"·valign="top">bit:</td><td·align="left"·valign="top">binary·data</td></tr><tr><td·align="left"·valign="top">sbyte:</td><td·align="left"·valign="top">signed·8·bit</td></tr><tr><td·align="left"·valign="top">ubyte:</td><td·align="left"·valign="top">unsigned·8·bit</td></tr><tr><td·align="left"·valign="top">sshort:</td><td·align="left"·valign="top">signed·16·bit</td></tr><tr><td·align="left"·valign="top">ushort:</td><td·align="left"·valign="top">unsigned·16·bit</td></tr><tr><td·align="left"·valign="top">sint:</td><td·align="left"·valign="top">signed·32·bit</td></tr><tr><td·align="left"·valign="top">uint:</td><td·align="left"·valign="top">unsigned·32·bit</td></tr><tr><td·align="left"·valign="top">slong:</td><td·align="left"·valign="top">signed·64·bit</td></tr><tr><td·align="left"·valign="top">ulong:</td><td·align="left"·valign="top">unsigned·64·bit</td></tr><tr><td·align="left"·valign="top">float:</td><td·align="left"·valign="top">floating·point·32·bit</td></tr><tr><td·align="left"·valign="top">double:</td><td·align="left"·valign="top">floating·point·64·bit</td></tr><tr><td·align="left"·valign="top">none:</td><td·align="left"·valign="top">no·pixel·type·defined</td></tr></tbody></table></div></td></tr></tbody></table></div></div><p·class="plugin">	66	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginconvert2dimagefilter"></a>convert</h5></div></div></div><p·class="plugindescr">image·pixel·format·conversion·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">a</td><td·align="center"·valign="top">float</td><td·align="center"·valign="top">1</td><td·align="left"·valign="top">linear·conversion·parameter·a</td></tr><tr><td·align="center"·valign="top">b</td><td·align="center"·valign="top">float</td><td·align="center"·valign="top">0</td><td·align="left"·valign="top">linear·conversion·parameter·b</td></tr><tr><td·align="center"·valign="top">map</td><td·align="center"·valign="top">dict</td><td·align="center"·valign="top">opt</td><td><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·class="sc0"><col·class="sc1"></colgroup><tbody><tr><td·colspan="2"·align="left"·valign="top">conversion·mapping</td></tr><tr><td·align="left"·valign="top">copy:</td><td·align="left"·valign="top">copy·data·when·converting</td></tr><tr><td·align="left"·valign="top">linear:</td><td·align="left"·valign="top">apply·linear·transformation·x·->·a*x+b</td></tr><tr><td·align="left"·valign="top">range:</td><td·align="left"·valign="top">apply·linear·transformation·that·maps·the·input·data·type·range·to·the·output·data·type·range</td></tr><tr><td·align="left"·valign="top">opt:</td><td·align="left"·valign="top">apply·a·linear·transformation·that·maps·the·real·input·range·to·the·full·output·range</td></tr><tr><td·align="left"·valign="top">optstat:</td><td·align="left"·valign="top">apply·a·linear·transform·that·maps·based·on·input·mean·and·variation·to·the·full·output·range</td></tr></tbody></table></div></td></tr><tr><td·align="center"·valign="top">repn</td><td·align="center"·valign="top">dict</td><td·align="center"·valign="top">ubyte</td><td><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·class="sc0"><col·class="sc1"></colgroup><tbody><tr><td·colspan="2"·align="left"·valign="top">output·pixel·type</td></tr><tr><td·align="left"·valign="top">bit:</td><td·align="left"·valign="top">binary·data</td></tr><tr><td·align="left"·valign="top">sbyte:</td><td·align="left"·valign="top">signed·8·bit</td></tr><tr><td·align="left"·valign="top">ubyte:</td><td·align="left"·valign="top">unsigned·8·bit</td></tr><tr><td·align="left"·valign="top">sshort:</td><td·align="left"·valign="top">signed·16·bit</td></tr><tr><td·align="left"·valign="top">ushort:</td><td·align="left"·valign="top">unsigned·16·bit</td></tr><tr><td·align="left"·valign="top">sint:</td><td·align="left"·valign="top">signed·32·bit</td></tr><tr><td·align="left"·valign="top">uint:</td><td·align="left"·valign="top">unsigned·32·bit</td></tr><tr><td·align="left"·valign="top">slong:</td><td·align="left"·valign="top">signed·64·bit</td></tr><tr><td·align="left"·valign="top">ulong:</td><td·align="left"·valign="top">unsigned·64·bit</td></tr><tr><td·align="left"·valign="top">float:</td><td·align="left"·valign="top">floating·point·32·bit</td></tr><tr><td·align="left"·valign="top">double:</td><td·align="left"·valign="top">floating·point·64·bit</td></tr><tr><td·align="left"·valign="top">none:</td><td·align="left"·valign="top">no·pixel·type·defined</td></tr></tbody></table></div></td></tr></tbody></table></div></div><p·class="plugin">
67	····</p><p·class="plugin">	67	····</p><p·class="plugin">
68	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="plugincrop2dimagefilter"></a>crop</h5></div></div></div><p·class="plugindescr">Crop·a·region·of·an·image,·the·region·is·always·clamped·to·the·original·image·size..·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">end</td><td·align="center"·valign="top">streamable</td><td·align="center"·valign="top">[[-1,-1]]</td><td·align="left"·valign="top">end·of·crop·region</td></tr><tr><td·align="center"·valign="top">start</td><td·align="center"·valign="top">streamable</td><td·align="center"·valign="top">[[0,0]]</td><td·align="left"·valign="top">start·of·crop·region</td></tr></tbody></table></div></div><p·class="plugin">	68	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="plugincrop2dimagefilter"></a>crop</h5></div></div></div><p·class="plugindescr">Crop·a·region·of·an·image,·the·region·is·always·clamped·to·the·original·image·size..·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">end</td><td·align="center"·valign="top">streamable</td><td·align="center"·valign="top">[[-1,-1]]</td><td·align="left"·valign="top">end·of·crop·region</td></tr><tr><td·align="center"·valign="top">start</td><td·align="center"·valign="top">streamable</td><td·align="center"·valign="top">[[0,0]]</td><td·align="left"·valign="top">start·of·crop·region</td></tr></tbody></table></div></div><p·class="plugin">
69	····</p><p·class="plugin">	69	····</p><p·class="plugin">
70	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="plugindilate2dimagefilter"></a>dilate</h5></div></div></div><p·class="plugindescr">2d·image·stack·dilate·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">hint</td><td·align="center"·valign="top">set</td><td·align="center"·valign="top">black</td><td·align="left"·valign="top">a·hint·at·the·main·image·content·Supported·values·are:(black,·white,·)</td></tr><tr><td·align="center"·valign="top">shape</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">[sphere:r=2]</td><td·align="left"·valign="top">structuring·element.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype2dimageshape.html"·title="Plugin·type:·2dimage/shape">Plugin·type:·2dimage/shape</a></td></tr></tbody></table></div></div><p·class="plugin">	70	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="plugindilate2dimagefilter"></a>dilate</h5></div></div></div><p·class="plugindescr">2d·image·stack·dilate·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">hint</td><td·align="center"·valign="top">set</td><td·align="center"·valign="top">black</td><td·align="left"·valign="top">a·hint·at·the·main·image·content·Supported·values·are:(black,·white,·)</td></tr><tr><td·align="center"·valign="top">shape</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">[sphere:r=2]</td><td·align="left"·valign="top">structuring·element.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype2dimageshape.html"·title="Plugin·type:·2dimage/shape">Plugin·type:·2dimage/shape</a></td></tr></tbody></table></div></div><p·class="plugin">
71	····</p><p·class="plugin">	71	····</p><p·class="plugin">


Offset 16, 19 lines modified		Offset 16, 19 lines modified
16	····</p><p·class="plugin">	16	····</p><p·class="plugin">
17	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="plugindilate2dstackfilter"></a>dilate</h5></div></div></div><p·class="plugindescr">2D·Stack·morphological·filter·'dilate'.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">shape</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">6n</td><td·align="left"·valign="top">structuring·element.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype3dimageshape.html"·title="Plugin·type:·3dimage/shape">Plugin·type:·3dimage/shape</a></td></tr></tbody></table></div></div><p·class="plugin">	17	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="plugindilate2dstackfilter"></a>dilate</h5></div></div></div><p·class="plugindescr">2D·Stack·morphological·filter·'dilate'.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">shape</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">6n</td><td·align="left"·valign="top">structuring·element.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype3dimageshape.html"·title="Plugin·type:·3dimage/shape">Plugin·type:·3dimage/shape</a></td></tr></tbody></table></div></div><p·class="plugin">
18	····</p><p·class="plugin">	18	····</p><p·class="plugin">
19	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginerode2dstackfilter"></a>erode</h5></div></div></div><p·class="plugindescr">2D·Stack·morphological·filter·'erode'.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">shape</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">6n</td><td·align="left"·valign="top">structuring·element.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype3dimageshape.html"·title="Plugin·type:·3dimage/shape">Plugin·type:·3dimage/shape</a></td></tr></tbody></table></div></div><p·class="plugin">	19	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginerode2dstackfilter"></a>erode</h5></div></div></div><p·class="plugindescr">2D·Stack·morphological·filter·'erode'.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">shape</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">6n</td><td·align="left"·valign="top">structuring·element.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype3dimageshape.html"·title="Plugin·type:·3dimage/shape">Plugin·type:·3dimage/shape</a></td></tr></tbody></table></div></div><p·class="plugin">
20	····</p><p·class="plugin">	20	····</p><p·class="plugin">
21	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="plugingauss2dstackfilter"></a>gauss</h5></div></div></div><p·class="plugindescr">Gauss·2D·fifo·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">w</td><td·align="center"·valign="top">int·in·[1,·inf)</td><td·align="center"·valign="top">1</td><td·align="left"·valign="top">filter·width·parameter·(2*w+1)</td></tr></tbody></table></div></div><p·class="plugin">	21	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="plugingauss2dstackfilter"></a>gauss</h5></div></div></div><p·class="plugindescr">Gauss·2D·fifo·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">w</td><td·align="center"·valign="top">int·in·[1,·inf)</td><td·align="center"·valign="top">1</td><td·align="left"·valign="top">filter·width·parameter·(2*w+1)</td></tr></tbody></table></div></div><p·class="plugin">
22	····</p><p·class="plugin">	22	····</p><p·class="plugin">
23	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginlabel2dstackfilter"></a>label</h5></div></div></div><p·class="plugindescr">Stack·Label·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">map</td><td·align="center"·valign="top">string</td><td·align="center"·valign="top">(~~req~~uired,in~~put~~)</td><td·align="left"·valign="top">Mapfile·to·save·label·numbers·that·are·joined</td></tr><tr><td·align="center"·valign="top">n</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">4n</td><td·align="left"·valign="top">2D·neighbourhood·shape·to·define·connectedness.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype2dimageshape.html"·title="Plugin·type:·2dimage/shape">Plugin·type:·2dimage/shape</a></td></tr></tbody></table></div></div><p·class="plugin">	23	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginlabel2dstackfilter"></a>label</h5></div></div></div><p·class="plugindescr">Stack·Label·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">map</td><td·align="center"·valign="top">string</td><td·align="center"·valign="top">(input,required)</td><td·align="left"·valign="top">Mapfile·to·save·label·numbers·that·are·joined</td></tr><tr><td·align="center"·valign="top">n</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">4n</td><td·align="left"·valign="top">2D·neighbourhood·shape·to·define·connectedness.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype2dimageshape.html"·title="Plugin·type:·2dimage/shape">Plugin·type:·2dimage/shape</a></td></tr></tbody></table></div></div><p·class="plugin">
24	····</p><p·class="plugin">	24	····</p><p·class="plugin">
25	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginmedian2dstackfilter"></a>median</h5></div></div></div><p·class="plugindescr">median·2D·fifo·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">w</td><td·align="center"·valign="top">int·in·[1,·inf)</td><td·align="center"·valign="top">1</td><td·align="left"·valign="top">filter·width·parameter</td></tr></tbody></table></div></div><p·class="plugin">	25	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginmedian2dstackfilter"></a>median</h5></div></div></div><p·class="plugindescr">median·2D·fifo·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">w</td><td·align="center"·valign="top">int·in·[1,·inf)</td><td·align="center"·valign="top">1</td><td·align="left"·valign="top">filter·width·parameter</td></tr></tbody></table></div></div><p·class="plugin">
26	····</p><p·class="plugin">	26	····</p><p·class="plugin">
27	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginmlv2dstackfilter"></a>mlv</h5></div></div></div><p·class="plugindescr">Mean·of·Least·Variance·2D·stack·image·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">w</td><td·align="center"·valign="top">int·in·[1,·inf)</td><td·align="center"·valign="top">1</td><td·align="left"·valign="top">filter·width·parameter</td></tr></tbody></table></div></div><p·class="plugin">	27	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginmlv2dstackfilter"></a>mlv</h5></div></div></div><p·class="plugindescr">Mean·of·Least·Variance·2D·stack·image·filter.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">w</td><td·align="center"·valign="top">int·in·[1,·inf)</td><td·align="center"·valign="top">1</td><td·align="left"·valign="top">filter·width·parameter</td></tr></tbody></table></div></div><p·class="plugin">
28	····</p><p·class="plugin">	28	····</p><p·class="plugin">
29	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginopen2dstackfilter"></a>open</h5></div></div></div><p·class="plugindescr">2D·Stack·morphological·filter·'open'.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">shape</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">6n</td><td·align="left"·valign="top">structuring·element.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype3dimageshape.html"·title="Plugin·type:·3dimage/shape">Plugin·type:·3dimage/shape</a></td></tr></tbody></table></div></div><p·class="plugin">	29	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginopen2dstackfilter"></a>open</h5></div></div></div><p·class="plugindescr">2D·Stack·morphological·filter·'open'.·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">shape</td><td·align="center"·valign="top">factory</td><td·align="center"·valign="top">6n</td><td·align="left"·valign="top">structuring·element.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype3dimageshape.html"·title="Plugin·type:·3dimage/shape">Plugin·type:·3dimage/shape</a></td></tr></tbody></table></div></div><p·class="plugin">
30	····</p><p·class="plugin">	30	····</p><p·class="plugin">
31	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginregiongrow2dstackfilter"></a>regiongrow</h5></div></div></div><p·class="plugindescr">Run·a·region-growing·filter·on·a·stack·of·images·that·comprise·a·3D·image.··The·region·growing·is·based·on·class·probabilities·obtained·from·a·c-means·classification·of·the·pixel·intensities.·One·seed·thresh·is·use·to·initiate·a·region,·and·another·(lower)·threshold·is·used·to·stop·the·region·growing.·By·holding·a·number·of·3D·slices·in·the·working·memory·to·permit·the·region·to·grow·"backwards·"·in·the·stack·a·Quasi-3D·processing·is·achieved.·However,·with·complex·structures·the·region·growing·may·not·properly·be·segmented..·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">class</td><td·align="center"·valign="top">int·in·[0,·inf)</td><td·align="center"·valign="top">2</td><td·align="left"·valign="top">class·to·be·segmented</td></tr><tr><td·align="center"·valign="top">depth</td><td·align="center"·valign="top">int·in·[1,·inf)</td><td·align="center"·valign="top">10</td><td·align="left"·valign="top">number·of·slices·to·keep·during·processing</td></tr><tr><td·align="center"·valign="top">low</td><td·align="center"·valign="top">float·in·(0,·1]</td><td·align="center"·valign="top">0.5</td><td·align="left"·valign="top">low·threshold·for·acceptance·probability</td></tr><tr><td·align="center"·valign="top">map</td><td·align="center"·valign="top">string</td><td·align="center"·valign="top">(~~req~~uired,in~~put~~)</td><td·align="left"·valign="top">seed·class·map</td></tr><tr><td·align="center"·valign="top">seed</td><td·align="center"·valign="top">float·in·(0,·1]</td><td·align="center"·valign="top">0.98</td><td·align="left"·valign="top">threshold·for·seed·probability</td></tr></tbody></table></div></div><p·class="plugin">	31	······</p><div·class="sect4"><div·class="titlepage"><div><div><h5·class="title"><a·name="pluginregiongrow2dstackfilter"></a>regiongrow</h5></div></div></div><p·class="plugindescr">Run·a·region-growing·filter·on·a·stack·of·images·that·comprise·a·3D·image.··The·region·growing·is·based·on·class·probabilities·obtained·from·a·c-means·classification·of·the·pixel·intensities.·One·seed·thresh·is·use·to·initiate·a·region,·and·another·(lower)·threshold·is·used·to·stop·the·region·growing.·By·holding·a·number·of·3D·slices·in·the·working·memory·to·permit·the·region·to·grow·"backwards·"·in·the·stack·a·Quasi-3D·processing·is·achieved.·However,·with·complex·structures·the·region·growing·may·not·properly·be·segmented..·Supported·parameters·are:</p><div·class="informaltable"><table·class="informaltable"·width="100%"·border="1"><colgroup><col·width="10%"·class="c1"><col·width="20%"·class="c2"><col·width="10%"·class="c3"></colgroup><thead><tr><th·align="center"·valign="top">Name</th><th·align="center"·valign="top">Type</th><th·align="center"·valign="top">Default</th><th·align="center"·valign="top">Description</th></tr></thead><tbody><tr><td·align="center"·valign="top">class</td><td·align="center"·valign="top">int·in·[0,·inf)</td><td·align="center"·valign="top">2</td><td·align="left"·valign="top">class·to·be·segmented</td></tr><tr><td·align="center"·valign="top">depth</td><td·align="center"·valign="top">int·in·[1,·inf)</td><td·align="center"·valign="top">10</td><td·align="left"·valign="top">number·of·slices·to·keep·during·processing</td></tr><tr><td·align="center"·valign="top">low</td><td·align="center"·valign="top">float·in·(0,·1]</td><td·align="center"·valign="top">0.5</td><td·align="left"·valign="top">low·threshold·for·acceptance·probability</td></tr><tr><td·align="center"·valign="top">map</td><td·align="center"·valign="top">string</td><td·align="center"·valign="top">(input,required)</td><td·align="left"·valign="top">seed·class·map</td></tr><tr><td·align="center"·valign="top">seed</td><td·align="center"·valign="top">float·in·(0,·1]</td><td·align="center"·valign="top">0.98</td><td·align="left"·valign="top">threshold·for·seed·probability</td></tr></tbody></table></div></div><p·class="plugin">
32	····</p><h4><a·name="idp18364"></a>Plugin·consumers:</h4><p·class="consumer">	32	····</p><h4><a·name="idp18364"></a>Plugin·consumers:</h4><p·class="consumer">
33	······<a·class="xref"·href="Secmia2dstackfilter.html"·title="mia-2dstackfilter">mia-2dstackfilter</a>	33	······<a·class="xref"·href="Secmia2dstackfilter.html"·title="mia-2dstackfilter">mia-2dstackfilter</a>
34	····</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="SecPlugintype2dimagetransform.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="plugins.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="SecPlugintype2dtransformio.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Plugin·type:·2dimage/transform </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> Plugin·type:·2dtransform/io</td></tr></table></div></body></html>	34	····</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="SecPlugintype2dimagetransform.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="plugins.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="SecPlugintype2dtransformio.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Plugin·type:·2dimage/transform </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> Plugin·type:·2dtransform/io</td></tr></table></div></body></html>


Offset 65, 15 lines modified		Offset 65, 15 lines modified
65	c\x8co\x8om\x8mb\x8bi\x8in\x8ne\x8er\x8r	65	c\x8co\x8om\x8mb\x8bi\x8in\x8ne\x8er\x8r
66	Combine·two·images·with·the·given·combiner·operator.·if·'reverse'·is·set·to	66	Combine·two·images·with·the·given·combiner·operator.·if·'reverse'·is·set·to
67	false,·the·first·operator·is·the·image·passed·through·the·filter·pipeline,·and	67	false,·the·first·operator·is·the·image·passed·through·the·filter·pipeline,·and
68	the·second·image·is·loaded·from·the·file·given·with·the·'image'·parameter·the	68	the·second·image·is·loaded·from·the·file·given·with·the·'image'·parameter·the
69	moment·the·filter·is·run..·Supported·parameters·are:	69	moment·the·filter·is·run..·Supported·parameters·are:
70	·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·	70	·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·
71	\|_\x8·_\x8·_\x8N\x8N_\x8a\x8a_\x8m\x8m_\x8e\x8e_\x8·_\x8\|_\x8·_\x8·_\x8T\x8T_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8f\x8f_\x8a\x8a_\x8u\x8u_\x8l\x8l_\x8t\x8t_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8s\x8s_\x8c\x8c_\x8r\x8r_\x8i\x8i_\x8p\x8p_\x8t\x8t_\x8i\x8i_\x8o\x8o_\x8n\x8n_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|	71	\|_\x8·_\x8·_\x8N\x8N_\x8a\x8a_\x8m\x8m_\x8e\x8e_\x8·_\x8\|_\x8·_\x8·_\x8T\x8T_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8f\x8f_\x8a\x8a_\x8u\x8u_\x8l\x8l_\x8t\x8t_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8s\x8s_\x8c\x8c_\x8r\x8r_\x8i\x8i_\x8p\x8p_\x8t\x8t_\x8i\x8i_\x8o\x8o_\x8n\x8n_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|
72	\|·image·\|···io··\|(~~req~~uired,in~~put~~)\|second·image·that·is·needed·in·the·combiner.\|	72	\|·image·\|···io··\|(input,required)\|second·image·that·is·needed·in·the·combiner.\|
73	\|·······\|·······\|················\|For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:···\|	73	\|·······\|·······\|················\|For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:···\|
74	\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|	74	\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|
75	\|···op··\|factory\|····(required)··\|Image·combiner·to·be·applied·to·the·images.·\|	75	\|···op··\|factory\|····(required)··\|Image·combiner·to·be·applied·to·the·images.·\|
76	\|·······\|·······\|················\|For·supported·plug-ins·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:·····\|	76	\|·······\|·······\|················\|For·supported·plug-ins·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:·····\|
77	\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8c_\x8o_\x8m_\x8b_\x8i_\x8n_\x8e_\x8r_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|	77	\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8c_\x8o_\x8m_\x8b_\x8i_\x8n_\x8e_\x8r_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|
78	\|reverse\|··bool·\|···········0····\|reverse·the·order·in·which·the·images·passed\|	78	\|reverse\|··bool·\|···········0····\|reverse·the·order·in·which·the·images·passed\|
79	\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8t_\x8o_\x8·_\x8t_\x8h_\x8e_\x8·_\x8c_\x8o_\x8m_\x8b_\x8i_\x8n_\x8e_\x8r_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|	79	\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8t_\x8o_\x8·_\x8t_\x8h_\x8e_\x8·_\x8c_\x8o_\x8m_\x8b_\x8i_\x8n_\x8e_\x8r_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|


Offset 42, 15 lines modified		Offset 42, 15 lines modified
42	·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·	42	·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·
43	\|_\x8N\x8N_\x8a\x8a_\x8m\x8m_\x8e\x8e_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8T\x8T_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8·_\x8·_\x8·_\x8\|_\x8D\x8D_\x8e\x8e_\x8f\x8f_\x8a\x8a_\x8u\x8u_\x8l\x8l_\x8t\x8t_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8s\x8s_\x8c\x8c_\x8r\x8r_\x8i\x8i_\x8p\x8p_\x8t\x8t_\x8i\x8i_\x8o\x8o_\x8n\x8n_\x8·_\x8·_\x8·_\x8·_\x8·\|	43	\|_\x8N\x8N_\x8a\x8a_\x8m\x8m_\x8e\x8e_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8T\x8T_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8·_\x8·_\x8·_\x8\|_\x8D\x8D_\x8e\x8e_\x8f\x8f_\x8a\x8a_\x8u\x8u_\x8l\x8l_\x8t\x8t_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8s\x8s_\x8c\x8c_\x8r\x8r_\x8i\x8i_\x8p\x8p_\x8t\x8t_\x8i\x8i_\x8o\x8o_\x8n\x8n_\x8·_\x8·_\x8·_\x8·_\x8·\|
44	\|_\x8·_\x8·_\x8w_\x8·_\x8\|_\x8i_\x8n_\x8t_\x8·_\x8i_\x8n_\x8·_\x8[_\x81_\x8,_\x8·_\x8i_\x8n_\x8f_\x8)_\x8\|_\x8·_\x8·_\x8·_\x8·_\x81_\x8·_\x8·_\x8\|_\x8f_\x8i_\x8l_\x8t_\x8e_\x8r_\x8·_\x8w_\x8i_\x8d_\x8t_\x8h_\x8·_\x8p_\x8a_\x8r_\x8a_\x8m_\x8e_\x8t_\x8e_\x8r_\x8·_\x8(_\x82_\x8*_\x8w_\x8+_\x81_\x8)\|	44	\|_\x8·_\x8·_\x8w_\x8·_\x8\|_\x8i_\x8n_\x8t_\x8·_\x8i_\x8n_\x8·_\x8[_\x81_\x8,_\x8·_\x8i_\x8n_\x8f_\x8)_\x8\|_\x8·_\x8·_\x8·_\x8·_\x81_\x8·_\x8·_\x8\|_\x8f_\x8i_\x8l_\x8t_\x8e_\x8r_\x8·_\x8w_\x8i_\x8d_\x8t_\x8h_\x8·_\x8p_\x8a_\x8r_\x8a_\x8m_\x8e_\x8t_\x8e_\x8r_\x8·_\x8(_\x82_\x8*_\x8w_\x8+_\x81_\x8)\|
45	l\x8la\x8ab\x8be\x8el\x8l	45	l\x8la\x8ab\x8be\x8el\x8l
46	Stack·Label·filter.·Supported·parameters·are:	46	Stack·Label·filter.·Supported·parameters·are:
47	·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·	47	·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·
48	\|_\x8N\x8N_\x8a\x8a_\x8m\x8m_\x8e\x8e_\x8\|_\x8·_\x8·_\x8T\x8T_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8f\x8f_\x8a\x8a_\x8u\x8u_\x8l\x8l_\x8t\x8t_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8s\x8s_\x8c\x8c_\x8r\x8r_\x8i\x8i_\x8p\x8p_\x8t\x8t_\x8i\x8i_\x8o\x8o_\x8n\x8n_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|	48	\|_\x8N\x8N_\x8a\x8a_\x8m\x8m_\x8e\x8e_\x8\|_\x8·_\x8·_\x8T\x8T_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8f\x8f_\x8a\x8a_\x8u\x8u_\x8l\x8l_\x8t\x8t_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8s\x8s_\x8c\x8c_\x8r\x8r_\x8i\x8i_\x8p\x8p_\x8t\x8t_\x8i\x8i_\x8o\x8o_\x8n\x8n_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|
49	\|_\x8m_\x8a_\x8p_\x8·_\x8\|_\x8s_\x8t_\x8r_\x8i_\x8n_\x8g_\x8·_\x8\|_\x8(_\x8r_.e_.q_.u_.i_.r_.e_.d_.,_.i_.n_.p_.u_.t_\x8)_\x8\|_\x8M_\x8a_\x8p_\x8f_\x8i_\x8l_\x8e_\x8·_\x8t_\x8o_\x8·_\x8s_\x8a_\x8v_\x8e_\x8·_\x8l_\x8a_\x8b_\x8e_\x8l_\x8·_\x8n_\x8u_\x8m_\x8b_\x8e_\x8r_\x8s_\x8·_\x8t_\x8h_\x8a_\x8t_\x8·_\x8a_\x8r_\x8e_\x8·_\x8j_\x8o_\x8i_\x8n_\x8e_\x8d_\x8·_\x8·\|	49	\|_\x8m_\x8a_\x8p_\x8·_\x8\|_\x8s_\x8t_\x8r_\x8i_\x8n_\x8g_\x8·_\x8\|_\x8(_\x8i_.n_.p_.u_.t_.,_.r_.e_.q_.u_.i_.r_.e_.d_\x8)_\x8\|_\x8M_\x8a_\x8p_\x8f_\x8i_\x8l_\x8e_\x8·_\x8t_\x8o_\x8·_\x8s_\x8a_\x8v_\x8e_\x8·_\x8l_\x8a_\x8b_\x8e_\x8l_\x8·_\x8n_\x8u_\x8m_\x8b_\x8e_\x8r_\x8s_\x8·_\x8t_\x8h_\x8a_\x8t_\x8·_\x8a_\x8r_\x8e_\x8·_\x8j_\x8o_\x8i_\x8n_\x8e_\x8d_\x8·_\x8·\|
50	\|··n·\|factory\|··········4n····\|2D·neighbourhood·shape·to·define·connectedness.\|	50	\|··n·\|factory\|··········4n····\|2D·neighbourhood·shape·to·define·connectedness.\|
51	\|····\|·······\|················\|For·supported·plug-ins·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:········\|	51	\|····\|·······\|················\|For·supported·plug-ins·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:········\|
52	\|_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8s_\x8h_\x8a_\x8p_\x8e_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|	52	\|_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8s_\x8h_\x8a_\x8p_\x8e_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|
53	m\x8me\x8ed\x8di\x8ia\x8an\x8n	53	m\x8me\x8ed\x8di\x8ia\x8an\x8n
54	median·2D·fifo·filter.·Supported·parameters·are:	54	median·2D·fifo·filter.·Supported·parameters·are:
55	·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·	55	·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·
56	\|_\x8N\x8N_\x8a\x8a_\x8m\x8m_\x8e\x8e_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8T\x8T_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8·_\x8·_\x8·_\x8\|_\x8D\x8D_\x8e\x8e_\x8f\x8f_\x8a\x8a_\x8u\x8u_\x8l\x8l_\x8t\x8t_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8s\x8s_\x8c\x8c_\x8r\x8r_\x8i\x8i_\x8p\x8p_\x8t\x8t_\x8i\x8i_\x8o\x8o_\x8n\x8n_\x8·_\x8·_\x8·\|	56	\|_\x8N\x8N_\x8a\x8a_\x8m\x8m_\x8e\x8e_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8T\x8T_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8·_\x8·_\x8·_\x8\|_\x8D\x8D_\x8e\x8e_\x8f\x8f_\x8a\x8a_\x8u\x8u_\x8l\x8l_\x8t\x8t_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8s\x8s_\x8c\x8c_\x8r\x8r_\x8i\x8i_\x8p\x8p_\x8t\x8t_\x8i\x8i_\x8o\x8o_\x8n\x8n_\x8·_\x8·_\x8·\|


Offset 36, 15 lines modified		Offset 36, 15 lines modified
36	c\x8co\x8om\x8mb\x8bi\x8in\x8ne\x8er\x8r	36	c\x8co\x8om\x8mb\x8bi\x8in\x8ne\x8er\x8r
37	Combine·two·images·with·the·given·combiner·operator.·if·'reverse'·is·set·to	37	Combine·two·images·with·the·given·combiner·operator.·if·'reverse'·is·set·to
38	false,·the·first·operator·is·the·image·passed·through·the·filter·pipeline,·and	38	false,·the·first·operator·is·the·image·passed·through·the·filter·pipeline,·and
39	the·second·image·is·loaded·from·the·file·given·with·the·'image'·parameter·the	39	the·second·image·is·loaded·from·the·file·given·with·the·'image'·parameter·the
40	moment·the·filter·is·run..·Supported·parameters·are:	40	moment·the·filter·is·run..·Supported·parameters·are:
41	·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·	41	·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·
42	\|_\x8·_\x8·_\x8N\x8N_\x8a\x8a_\x8m\x8m_\x8e\x8e_\x8·_\x8\|_\x8·_\x8·_\x8T\x8T_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8f\x8f_\x8a\x8a_\x8u\x8u_\x8l\x8l_\x8t\x8t_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8s\x8s_\x8c\x8c_\x8r\x8r_\x8i\x8i_\x8p\x8p_\x8t\x8t_\x8i\x8i_\x8o\x8o_\x8n\x8n_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|	42	\|_\x8·_\x8·_\x8N\x8N_\x8a\x8a_\x8m\x8m_\x8e\x8e_\x8·_\x8\|_\x8·_\x8·_\x8T\x8T_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8f\x8f_\x8a\x8a_\x8u\x8u_\x8l\x8l_\x8t\x8t_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8D\x8D_\x8e\x8e_\x8s\x8s_\x8c\x8c_\x8r\x8r_\x8i\x8i_\x8p\x8p_\x8t\x8t_\x8i\x8i_\x8o\x8o_\x8n\x8n_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|
43	\|·image·\|···io··\|(~~req~~uired,in~~put~~)\|second·image·that·is·needed·in·the·combiner.\|	43	\|·image·\|···io··\|(input,required)\|second·image·that·is·needed·in·the·combiner.\|
44	\|·······\|·······\|················\|For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:···\|	44	\|·······\|·······\|················\|For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:···\|
45	\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x83_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|	45	\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x83_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|
46	\|···op··\|factory\|····(required)··\|Image·combiner·to·be·applied·to·the·images.·\|	46	\|···op··\|factory\|····(required)··\|Image·combiner·to·be·applied·to·the·images.·\|
47	\|·······\|·······\|················\|For·supported·plug-ins·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:·····\|	47	\|·······\|·······\|················\|For·supported·plug-ins·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:·····\|
48	\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x83_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8c_\x8o_\x8m_\x8b_\x8i_\x8n_\x8e_\x8r_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|	48	\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x83_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8c_\x8o_\x8m_\x8b_\x8i_\x8n_\x8e_\x8r_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|
49	\|reverse\|··bool·\|···········0····\|reverse·the·order·in·which·the·images·passed\|	49	\|reverse\|··bool·\|···········0····\|reverse·the·order·in·which·the·images·passed\|
50	\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8t_\x8o_\x8·_\x8t_\x8h_\x8e_\x8·_\x8c_\x8o_\x8m_\x8b_\x8i_\x8n_\x8e_\x8r_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|	50	\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8\|_\x8t_\x8o_\x8·_\x8t_\x8h_\x8e_\x8·_\x8c_\x8o_\x8m_\x8b_\x8i_\x8n_\x8e_\x8r_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·_\x8·\|


Offset 1, 4 lines modified		Offset 1, 4 lines modified
1	<html><head><meta·http-equiv="Content-Type"·content="text/html;·charset=ISO-8859-1"><title>mia-2davgmasked</title><link·rel="stylesheet"·type="text/css"·href="progref.css"><meta·name="generator"·content="DocBook·XSL·Stylesheets·Vsnapshot"><link·rel="home"·href="index.html"·title="Mia·Program·Reference"><link·rel="up"·href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html"·title="Analysis,·filtering,·combining,·and·segmentation·of·2D·images"><link·rel="prev"·href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html"·title="Analysis,·filtering,·combining,·and·segmentation·of·2D·images"><link·rel="next"·href="Secmia2dbinarycombine.html"·title="mia-2dbinarycombine"></head><body·bgcolor="white"·text="black"·link="#0000FF"·vlink="#840084"·alink="#0000FF"><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">mia-2davgmasked</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html">Prev</a> </td><th·width="60%"·align="center">Analysis,·filtering,·combining,·and·segmentation·of·2D·images</th><td·width="20%"·align="right"> <a·accesskey="n"·href="Secmia2dbinarycombine.html">Next</a></td></tr></table><hr></div><div·class="section"><div·class="titlepage"><div><div><h3·class="title"><a·name="Secmia2davgmasked"></a>mia-2davgmasked</h3></div></div></div><h4><a·name="idp982"></a>Sysnopis:</h4><div·class="cmdsynopsis"><p><code·class="command">mia-2davgmasked</code>··{-i·<em·class="replaceable"><code>io</code></em>}·{-m·<em·class="replaceable"><code>io</code></em>}·[	1	<html><head><meta·http-equiv="Content-Type"·content="text/html;·charset=ISO-8859-1"><title>mia-2davgmasked</title><link·rel="stylesheet"·type="text/css"·href="progref.css"><meta·name="generator"·content="DocBook·XSL·Stylesheets·Vsnapshot"><link·rel="home"·href="index.html"·title="Mia·Program·Reference"><link·rel="up"·href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html"·title="Analysis,·filtering,·combining,·and·segmentation·of·2D·images"><link·rel="prev"·href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html"·title="Analysis,·filtering,·combining,·and·segmentation·of·2D·images"><link·rel="next"·href="Secmia2dbinarycombine.html"·title="mia-2dbinarycombine"></head><body·bgcolor="white"·text="black"·link="#0000FF"·vlink="#840084"·alink="#0000FF"><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">mia-2davgmasked</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html">Prev</a> </td><th·width="60%"·align="center">Analysis,·filtering,·combining,·and·segmentation·of·2D·images</th><td·width="20%"·align="right"> <a·accesskey="n"·href="Secmia2dbinarycombine.html">Next</a></td></tr></table><hr></div><div·class="section"><div·class="titlepage"><div><div><h3·class="title"><a·name="Secmia2davgmasked"></a>mia-2davgmasked</h3></div></div></div><h4><a·name="idp982"></a>Sysnopis:</h4><div·class="cmdsynopsis"><p><code·class="command">mia-2davgmasked</code>··{-i·<em·class="replaceable"><code>io</code></em>}·{-m·<em·class="replaceable"><code>io</code></em>}·[
2	··········<em·class="replaceable"><code>options</code></em>	2	··········<em·class="replaceable"><code>options</code></em>
3	········...]</p></div><h4><a·name="idp991"></a>Description:</h4><p·class="description">Evaluate·average·intensities·of·an·image·seriesThis·program·is·used·to·evaluate·the·average·intensity·and·its·variation·of·a·series·of·images·in·a·given·masked·region.</p><h4><a·name="idp993"></a>Options:</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-files=(~~req~~uired,·in~~put~~);·io</span></dt><dd><p>input·image(s).·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd><dt><span·class="term">-m,·--mask-file=(~~req~~uired,·inp[·...·truncated·by·diffoscope;·len:·2,·SHA:·469cc643~~a19~~f~~b759~~0~~1e5~~d3~~31b~~8~~dc1~~4bef~~a8b9881~~0b246c2fb~~22fff0~~c382dc39e·...·]);·io</span></dt><dd><p>mask·image,·must·be·of·type·byte.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd></dl></div><h4><a·name="idp1005"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp1056"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp1062"></a>Example:</h4><p>	3	········...]</p></div><h4><a·name="idp991"></a>Description:</h4><p·class="description">Evaluate·average·intensities·of·an·image·seriesThis·program·is·used·to·evaluate·the·average·intensity·and·its·variation·of·a·series·of·images·in·a·given·masked·region.</p><h4><a·name="idp993"></a>Options:</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-files=(input,·required);·io</span></dt><dd><p>input·image(s).·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd><dt><span·class="term">-m,·--mask-file=(input,·requir[·...·truncated·by·diffoscope;·len:·2,·SHA:·9c1623f0d38e28e9594f2ef31a7ec909291c4fdb05a777dccd2e936a7f406011·...·]);·io</span></dt><dd><p>mask·image,·must·be·of·type·byte.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd></dl></div><h4><a·name="idp1005"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp1056"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp1062"></a>Example:</h4><p>
4	····</p><pre·class="screen">mia-2davgmasked·</pre><h4><a·name="idp1065"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dbinarycombine.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Analysis,·filtering,·combining,·and·segmentation·of·2D·images </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dbinarycombine</td></tr></table></div></body></html>	4	····</p><pre·class="screen">mia-2davgmasked·</pre><h4><a·name="idp1065"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dbinarycombine.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Analysis,·filtering,·combining,·and·segmentation·of·2D·images </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dbinarycombine</td></tr></table></div></body></html>


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5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:	5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:
6	mia-2davgmasked·{-i·i\x8io\x8o}·{-m·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]	6	mia-2davgmasked·{-i·i\x8io\x8o}·{-m·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	Evaluate·average·intensities·of·an·image·seriesThis·program·is·used·to·evaluate	8	Evaluate·average·intensities·of·an·image·seriesThis·program·is·used·to·evaluate
9	the·average·intensity·and·its·variation·of·a·series·of·images·in·a·given·masked	9	the·average·intensity·and·its·variation·of·a·series·of·images·in·a·given·masked
10	region.	10	region.
11	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	11	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
12	··-i,·--in-files=(~~req~~uired,·in~~put~~);·io	12	··-i,·--in-files=(input,·required);·io
13	······input·image(s).·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	13	······input·image(s).·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
14	··-m,·--mask-file=(~~req~~uired,·in~~put~~);·io	14	··-m,·--mask-file=(input,·required);·io
15	······mask·image,·must·be·of·type·byte.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n	15	······mask·image,·must·be·of·type·byte.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n
16	······_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	16	······_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
17	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o	17	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o
18	··-V,·--verbose=warning;·dict	18	··-V,·--verbose=warning;·dict
19	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.	19	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.
20	······Supported·priorities·starting·at·lowest·level·are:	20	······Supported·priorities·starting·at·lowest·level·are:
21	······trace:···Function·call·trace	21	······trace:···Function·call·trace


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3	===============================================================================	3	===============================================================================
4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8db\x8bi\x8in\x8na\x8ar\x8ry\x8yc\x8co\x8om\x8mb\x8bi\x8in\x8ne\x8e	4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8db\x8bi\x8in\x8na\x8ar\x8ry\x8yc\x8co\x8om\x8mb\x8bi\x8in\x8ne\x8e
5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:	5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:
6	mia-2dbinarycombine·{-1·i\x8io\x8o}·{-2·i\x8io\x8o}·{-o·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]	6	mia-2dbinarycombine·{-1·i\x8io\x8o}·{-2·i\x8io\x8o}·{-o·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	This·program·is·used·to·combine·two·binary·images·by·some·kind·of·operation.	8	This·program·is·used·to·combine·two·binary·images·by·some·kind·of·operation.
9	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	9	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
10	··-1,·--file1=(~~req~~uired,·in~~put~~);·io	10	··-1,·--file1=(input,·required);·io
11	······input·mask·image·1.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	11	······input·mask·image·1.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
12	··-2,·--file2=(~~req~~uired,·in~~put~~);·io	12	··-2,·--file2=(input,·required);·io
13	······input·mask·image·2.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	13	······input·mask·image·2.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
14	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·io	14	··-o,·--out-file=(required,·output);·io
15	······output·mask·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	15	······output·mask·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
16	··-p,·--operation=nor;·dict	16	··-p,·--operation=nor;·dict
17	······Operation·to·be·applied	17	······Operation·to·be·applied
18	······or:···logocal·or	18	······or:···logocal·or
19	······nor:··logocal·nor	19	······nor:··logocal·nor
20	······and:··logocal·and	20	······and:··logocal·and
21	······nand:·logocal·nand	21	······nand:·logocal·nand


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6	mia-2ddeform·{-i·i\x8io\x8o}·{-o·i\x8io\x8o}·{-t·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]	6	mia-2ddeform·{-i·i\x8io\x8o}·{-o·i\x8io\x8o}·{-t·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	This·program·is·used·to·deform·a·2D·image·using·a·deformation·vector·field.	8	This·program·is·used·to·deform·a·2D·image·using·a·deformation·vector·field.
9	Input·image·and·deformation·field·must·be·of·the·same·size.·The·transformation	9	Input·image·and·deformation·field·must·be·of·the·same·size.·The·transformation
10	formula·is·'x·->·x·-·v(x)'	10	formula·is·'x·->·x·-·v(x)'
11	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	11	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
12	··-i,·--in-file=(~~req~~uired,·in~~put~~);·io	12	··-i,·--in-file=(input,·required);·io
13	······input·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	13	······input·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
14	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·io	14	··-o,·--out-file=(required,·output);·io
15	······transformed·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	15	······transformed·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
16	··-t,·--transformation=(~~req~~uired,·in~~put~~);·io	16	··-t,·--transformation=(input,·required);·io
17	······transformation·vector·field.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	17	······transformation·vector·field.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
18	······_\x82_\x8d_\x8v_\x8f_\x8/_\x8i_\x8o	18	······_\x82_\x8d_\x8v_\x8f_\x8/_\x8i_\x8o
19	··-p,·--interpolator=bspline:d=3;·factory	19	··-p,·--interpolator=bspline:d=3;·factory
20	······image·interpolator·kernel.·For·supported·plug-ins·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x81_\x8d_\x8/	20	······image·interpolator·kernel.·For·supported·plug-ins·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x81_\x8d_\x8/
21	······_\x8s_\x8p_\x8l_\x8i_\x8n_\x8e_\x8k_\x8e_\x8r_\x8n_\x8e_\x8l	21	······_\x8s_\x8p_\x8l_\x8i_\x8n_\x8e_\x8k_\x8e_\x8r_\x8n_\x8e_\x8l
22	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o	22	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o
23	··-V,·--verbose=warning;·dict	23	··-V,·--verbose=warning;·dict


Offset 6, 20 lines modified		Offset 6, 20 lines modified
6	mia-2ddistance·{-i·i\x8io\x8o}·{-d·i\x8io\x8o}·{-o·s\x8st\x8tr\x8ri\x8in\x8ng\x8g}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]	6	mia-2ddistance·{-i·i\x8io\x8o}·{-d·i\x8io\x8o}·{-o·s\x8st\x8tr\x8ri\x8in\x8ng\x8g}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	This·program·evaluate·the·average·or·maximum·distance·of·a·mask·given·by·a	8	This·program·evaluate·the·average·or·maximum·distance·of·a·mask·given·by·a
9	binary·image·to·an·image·representing·a·distance·map·and·prints·the·result·to	9	binary·image·to·an·image·representing·a·distance·map·and·prints·the·result·to
10	stdout.·The·distance·map·can·be·obtained·by·running·the·filter·'diatance'·on·a	10	stdout.·The·distance·map·can·be·obtained·by·running·the·filter·'diatance'·on·a
11	binary·image.	11	binary·image.
12	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	12	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
13	··-i,·--in-file=(~~req~~uired,·in~~put~~);·io	13	··-i,·--in-file=(input,·required);·io
14	······input·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	14	······input·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
15	··-d,·--distance-file=(~~req~~uired,·in~~put~~);·io	15	··-d,·--distance-file=(input,·required);·io
16	······distance·field·image·(floating·point).·For·supported·file·types·see	16	······distance·field·image·(floating·point).·For·supported·file·types·see
17	······_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	17	······_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
18	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·string	18	··-o,·--out-file=(required,·output);·string
19	······output·file,·'-':·write·to·stdout	19	······output·file,·'-':·write·to·stdout
20	··-s,·--scale=1;·float	20	··-s,·--scale=1;·float
21	······distance·scaling·factor	21	······distance·scaling·factor
22	··-m,·--method=avg;·dict	22	··-m,·--method=avg;·dict
23	······distance·measuring·method	23	······distance·measuring·method
24	······avg:·use·average	24	······avg:·use·average
25	······max:·use·maximum	25	······max:·use·maximum


Offset 14, 9 lines modified		Offset 14, 9 lines modified
14	··style=sparse···#storage·style·(sparse\|grid)·	14	··style=sparse···#storage·style·(sparse\|grid)·
15	··repn=float32···#representation·of·values·	15	··repn=float32···#representation·of·values·
16	··size=1000·1000·#grid·size·of·the·transformation	16	··size=1000·1000·#grid·size·of·the·transformation
17	··endian=low·····#endianess·of·binary·data·(low\|big)·	17	··endian=low·····#endianess·of·binary·data·(low\|big)·
18	}	18	}

19	This·example·header·has·to·be·interpreted·like·follows:·two-dimensional·data,·each·entry·consists·of·7·values·the·values·etry·consists·of·a·2D·vector,·a·scalar,·and·a·2x2·matrix·(saved·in·row-major·format).The·data·records·represent·strain·tensors,·and·only·a·sparse·set·of·points·is·given.·The·values·are·given·as·single·floating·point·(32·bit).·The·original·transformation·field·corresponds·to·images·of·1000x1000·pixels·and·the·binary·data·is·stored·in·low·endian·format.</p><h4><a·name="idp6191"></a>Options:</h4><h4><a·name="idp6192"></a>	19	This·example·header·has·to·be·interpreted·like·follows:·two-dimensional·data,·each·entry·consists·of·7·values·the·values·etry·consists·of·a·2D·vector,·a·scalar,·and·a·2x2·matrix·(saved·in·row-major·format).The·data·records·represent·strain·tensors,·and·only·a·sparse·set·of·points·is·given.·The·values·are·given·as·single·floating·point·(32·bit).·The·original·transformation·field·corresponds·to·images·of·1000x1000·pixels·and·the·binary·data·is·stored·in·low·endian·format.</p><h4><a·name="idp6191"></a>Options:</h4><h4><a·name="idp6192"></a>
20	File-IO</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-file=(~~req~~uired,·in~~put~~);·string</span></dt><dd><p>input·point·set,·if·this·parameter·is·given·a·sparse·evaluation·of·the·quantity·will·be·done,·otherwise·the·quantity·is·evaluated·for·each·grid·point·of·the·transformation·range.</p></dd><dt><span·class="term">-o,[·...·truncated·by·diffoscope;·len:·182,·SHA:·70~~07c865~~7~~54e1~~a~~4361fb86~~c0f4d5~~74eb~~6~~b1c1999f8~~e2ea40~~1b3~~4~~07ba67f92d0c~~·...·]);·io</span></dt><dd><p>transformation·of·which·the·quantity·will·be·evaluated..·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dtransformio.html"·title="Plugin·type:·2dtransform/io">Plugin·type:·2dtransform/io</a></p></dd></dl></div><h4><a·name="idp6207"></a>	20	File-IO</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-file=(input,·required);·string</span></dt><dd><p>input·point·set,·if·this·parameter·is·given·a·sparse·evaluation·of·the·quantity·will·be·done,·otherwise·the·quantity·is·evaluated·for·each·grid·point·of·the·transformation·range.</p></dd><dt><span·class="term">-o,[·...·truncated·by·diffoscope;·len:·182,·SHA:·0385e007b62cac577a714c6f9d599d1675684c2211ebeee086b4aad8bdee5711·...·]);·io</span></dt><dd><p>transformation·of·which·the·quantity·will·be·evaluated..·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dtransformio.html"·title="Plugin·type:·2dtransform/io">Plugin·type:·2dtransform/io</a></p></dd></dl></div><h4><a·name="idp6207"></a>
21	Parameters</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-q,·--quantity=strain;·dict</span></dt><dd><p>Specify·the·quantity·to·be·evaluated·at·the·given·points</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">derivative:</td><td·align="left"·valign="top">Evaluate·the·transformation·derivative·at·the·given·points</td></tr><tr><td·align="left"·valign="top">strain:</td><td·align="left"·valign="top">Evaluate·the·strain·tensor·at·the·given·points</td></tr></tbody></table></div></dd></dl></div><h4><a·name="idp6224"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp6275"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp6281"></a>Example:</h4><p>Derivative·of·the·transformation·change.v2df·for·each··point·given·in·input.csv·are·evaluated·and·written·to·output.s.</p><pre·class="screen">mia-2deval-transformquantity·-i·input.csv·-o·output.s·--transformation·change.v2df</pre><h4><a·name="idp6284"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="SecToolsfortheAnalysisof2Dimageseries.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecToolsfortheAnalysisof2Dimageseries.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dtrackpixelmovement.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Tools·for·the·Analysis·of·2D·image·series </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dtrackpixelmovement</td></tr></table></div></body></html>	21	Parameters</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-q,·--quantity=strain;·dict</span></dt><dd><p>Specify·the·quantity·to·be·evaluated·at·the·given·points</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">derivative:</td><td·align="left"·valign="top">Evaluate·the·transformation·derivative·at·the·given·points</td></tr><tr><td·align="left"·valign="top">strain:</td><td·align="left"·valign="top">Evaluate·the·strain·tensor·at·the·given·points</td></tr></tbody></table></div></dd></dl></div><h4><a·name="idp6224"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp6275"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp6281"></a>Example:</h4><p>Derivative·of·the·transformation·change.v2df·for·each··point·given·in·input.csv·are·evaluated·and·written·to·output.s.</p><pre·class="screen">mia-2deval-transformquantity·-i·input.csv·-o·output.s·--transformation·change.v2df</pre><h4><a·name="idp6284"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="SecToolsfortheAnalysisof2Dimageseries.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecToolsfortheAnalysisof2Dimageseries.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dtrackpixelmovement.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Tools·for·the·Analysis·of·2D·image·series </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dtrackpixelmovement</td></tr></table></div></body></html>


Offset 20, 21 lines modified		Offset 20, 21 lines modified
20	of·a·2D·vector,·a·scalar,·and·a·2x2·matrix·(saved·in·row-major·format).The·data	20	of·a·2D·vector,·a·scalar,·and·a·2x2·matrix·(saved·in·row-major·format).The·data
21	records·represent·strain·tensors,·and·only·a·sparse·set·of·points·is·given.·The	21	records·represent·strain·tensors,·and·only·a·sparse·set·of·points·is·given.·The
22	values·are·given·as·single·floating·point·(32·bit).·The·original·transformation	22	values·are·given·as·single·floating·point·(32·bit).·The·original·transformation
23	field·corresponds·to·images·of·1000x1000·pixels·and·the·binary·data·is·stored	23	field·corresponds·to·images·of·1000x1000·pixels·and·the·binary·data·is·stored
24	in·low·endian·format.	24	in·low·endian·format.
25	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	25	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
26	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O	26	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O
27	··-i,·--in-file=(~~req~~uired,·in~~put~~);·string	27	··-i,·--in-file=(input,·required);·string
28	······input·point·set,·if·this·parameter·is·given·a·sparse·evaluation·of·the	28	······input·point·set,·if·this·parameter·is·given·a·sparse·evaluation·of·the
29	······quantity·will·be·done,·otherwise·the·quantity·is·evaluated·for·each·grid	29	······quantity·will·be·done,·otherwise·the·quantity·is·evaluated·for·each·grid
30	······point·of·the·transformation·range.	30	······point·of·the·transformation·range.
31	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·string	31	··-o,·--out-file=(required,·output);·string
32	······output·strains·file,·for·a·format·description·see·above.	32	······output·strains·file,·for·a·format·description·see·above.
33	··-t,·--transformation=(~~req~~uired,·in~~put~~);·io	33	··-t,·--transformation=(input,·required);·io
34	······transformation·of·which·the·quantity·will·be·evaluated..·For·supported	34	······transformation·of·which·the·quantity·will·be·evaluated..·For·supported
35	······file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8t_\x8r_\x8a_\x8n_\x8s_\x8f_\x8o_\x8r_\x8m_\x8/_\x8i_\x8o	35	······file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8t_\x8r_\x8a_\x8n_\x8s_\x8f_\x8o_\x8r_\x8m_\x8/_\x8i_\x8o
36	P\x8Pa\x8ar\x8ra\x8am\x8me\x8et\x8te\x8er\x8rs\x8s	36	P\x8Pa\x8ar\x8ra\x8am\x8me\x8et\x8te\x8er\x8rs\x8s
37	··-q,·--quantity=strain;·dict	37	··-q,·--quantity=strain;·dict
38	······Specify·the·quantity·to·be·evaluated·at·the·given·points	38	······Specify·the·quantity·to·be·evaluated·at·the·given·points
39	······derivative:·Evaluate·the·transformation·derivative·at·the·given·points	39	······derivative:·Evaluate·the·transformation·derivative·at·the·given·points
40	······strain:·····Evaluate·the·strain·tensor·at·the·given·points	40	······strain:·····Evaluate·the·strain·tensor·at·the·given·points


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1	<html><head><meta·http-equiv="Content-Type"·content="text/html;·charset=ISO-8859-1"><title>mia-2ddeform</title><link·rel="stylesheet"·type="text/css"·href="progref.css"><meta·name="generator"·content="DocBook·XSL·Stylesheets·Vsnapshot"><link·rel="home"·href="index.html"·title="Mia·Program·Reference"><link·rel="up"·href="SecRegistrationComparisonandTransformationof2Dimages.html"·title="Registration,·Comparison,·and·Transformation·of·2D·images"><link·rel="prev"·href="Secmia2dcost.html"·title="mia-2dcost"><link·rel="next"·href="Secmia2dfluid.html"·title="mia-2dfluid"></head><body·bgcolor="white"·text="black"·link="#0000FF"·vlink="#840084"·alink="#0000FF"><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">mia-2ddeform</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="Secmia2dcost.html">Prev</a> </td><th·width="60%"·align="center">Registration,·Comparison,·and·Transformation·of·2D·images</th><td·width="20%"·align="right"> <a·accesskey="n"·href="Secmia2dfluid.html">Next</a></td></tr></table><hr></div><div·class="section"><div·class="titlepage"><div><div><h3·class="title"><a·name="Secmia2ddeform"></a>mia-2ddeform</h3></div></div></div><h4><a·name="idp3141"></a>Sysnopis:</h4><div·class="cmdsynopsis"><p><code·class="command">mia-2ddeform</code>··{-i·<em·class="replaceable"><code>io</code></em>}·{-o·<em·class="replaceable"><code>io</code></em>}·{-t·<em·class="replaceable"><code>io</code></em>}·[	1	<html><head><meta·http-equiv="Content-Type"·content="text/html;·charset=ISO-8859-1"><title>mia-2ddeform</title><link·rel="stylesheet"·type="text/css"·href="progref.css"><meta·name="generator"·content="DocBook·XSL·Stylesheets·Vsnapshot"><link·rel="home"·href="index.html"·title="Mia·Program·Reference"><link·rel="up"·href="SecRegistrationComparisonandTransformationof2Dimages.html"·title="Registration,·Comparison,·and·Transformation·of·2D·images"><link·rel="prev"·href="Secmia2dcost.html"·title="mia-2dcost"><link·rel="next"·href="Secmia2dfluid.html"·title="mia-2dfluid"></head><body·bgcolor="white"·text="black"·link="#0000FF"·vlink="#840084"·alink="#0000FF"><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">mia-2ddeform</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="Secmia2dcost.html">Prev</a> </td><th·width="60%"·align="center">Registration,·Comparison,·and·Transformation·of·2D·images</th><td·width="20%"·align="right"> <a·accesskey="n"·href="Secmia2dfluid.html">Next</a></td></tr></table><hr></div><div·class="section"><div·class="titlepage"><div><div><h3·class="title"><a·name="Secmia2ddeform"></a>mia-2ddeform</h3></div></div></div><h4><a·name="idp3141"></a>Sysnopis:</h4><div·class="cmdsynopsis"><p><code·class="command">mia-2ddeform</code>··{-i·<em·class="replaceable"><code>io</code></em>}·{-o·<em·class="replaceable"><code>io</code></em>}·{-t·<em·class="replaceable"><code>io</code></em>}·[
2	··········<em·class="replaceable"><code>options</code></em>	2	··········<em·class="replaceable"><code>options</code></em>
3	········...]</p></div><h4><a·name="idp3152"></a>Description:</h4><p·class="description">This·program·is·used·to·deform·a·2D·image·using·a·deformation·vector·field.·Input·image·and·deformation·field·must·be·of·the·same·size.·The·transformation·formula·is·'x·->·x·-·v(x)'</p><h4><a·name="idp3154"></a>Options:</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-file=(~~req~~uired,·in~~put~~);·io</span></dt><dd><p>input·image.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd><dt><span·class="term">-o,·--out-file=(ou~~tput~~,·requ~~ired~~)[·...·truncated·by·diffoscope;·len:·251,·SHA:·~~2dd950~~b79~~e268d4~~c~~0d8a950f5~~c~~06fc~~06~~1632cf5e5ac3fea138~~0~~8e3~~9~~fcfbe26~~61·...·]);·io</span></dt><dd><p>transformation·vector·field.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dvfio.html"·title="Plugin·type:·2dvf/io">Plugin·type:·2dvf/io</a></p></dd><dt><span·class="term">-p,·--interpolator=bspline:d=3;·factory</span></dt><dd><p>image·interpolator·kernel.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype1dsplinekernel.html"·title="Plugin·type:·1d/splinekernel">Plugin·type:·1d/splinekernel</a></p></dd></dl></div><h4><a·name="idp3176"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp3227"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp3233"></a>Example:</h4><p>Deform·image·input.png·by·using·the·transformation·given·in·transform.v·and·store·the·result·in·deformed.png·using·linear·interpolation</p><pre·class="screen">mia-2ddeform·-i·input.png·-t·transform.v·-o·deformed.png·-p·bspline:d=1</pre><h4><a·name="idp3236"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="Secmia2dcost.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecRegistrationComparisonandTransformationof2Dimages.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dfluid.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">mia-2dcost </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dfluid</td></tr></table></div></body></html>	3	········...]</p></div><h4><a·name="idp3152"></a>Description:</h4><p·class="description">This·program·is·used·to·deform·a·2D·image·using·a·deformation·vector·field.·Input·image·and·deformation·field·must·be·of·the·same·size.·The·transformation·formula·is·'x·->·x·-·v(x)'</p><h4><a·name="idp3154"></a>Options:</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-file=(input,·required);·io</span></dt><dd><p>input·image.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd><dt><span·class="term">-o,·--out-file=(required,·output)[·...·truncated·by·diffoscope;·len:·251,·SHA:·3436acba29997d16c8c21c7231ce8330bcbd081c30dbbc6d77036f91549a5262·...·]);·io</span></dt><dd><p>transformation·vector·field.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dvfio.html"·title="Plugin·type:·2dvf/io">Plugin·type:·2dvf/io</a></p></dd><dt><span·class="term">-p,·--interpolator=bspline:d=3;·factory</span></dt><dd><p>image·interpolator·kernel.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype1dsplinekernel.html"·title="Plugin·type:·1d/splinekernel">Plugin·type:·1d/splinekernel</a></p></dd></dl></div><h4><a·name="idp3176"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp3227"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp3233"></a>Example:</h4><p>Deform·image·input.png·by·using·the·transformation·given·in·transform.v·and·store·the·result·in·deformed.png·using·linear·interpolation</p><pre·class="screen">mia-2ddeform·-i·input.png·-t·transform.v·-o·deformed.png·-p·bspline:d=1</pre><h4><a·name="idp3236"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="Secmia2dcost.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecRegistrationComparisonandTransformationof2Dimages.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dfluid.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">mia-2dcost </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dfluid</td></tr></table></div></body></html>


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1	<html><head><meta·http-equiv="Content-Type"·content="text/html;·charset=ISO-8859-1"><title>mia-2dfluid</title><link·rel="stylesheet"·type="text/css"·href="progref.css"><meta·name="generator"·content="DocBook·XSL·Stylesheets·Vsnapshot"><link·rel="home"·href="index.html"·title="Mia·Program·Reference"><link·rel="up"·href="SecRegistrationComparisonandTransformationof2Dimages.html"·title="Registration,·Comparison,·and·Transformation·of·2D·images"><link·rel="prev"·href="Secmia2ddeform.html"·title="mia-2ddeform"><link·rel="next"·href="Secmia2dfluidsynregistration.html"·title="mia-2dfluid-syn-registration"></head><body·bgcolor="white"·text="black"·link="#0000FF"·vlink="#840084"·alink="#0000FF"><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">mia-2dfluid</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="Secmia2ddeform.html">Prev</a> </td><th·width="60%"·align="center">Registration,·Comparison,·and·Transformation·of·2D·images</th><td·width="20%"·align="right"> <a·accesskey="n"·href="Secmia2dfluidsynregistration.html">Next</a></td></tr></table><hr></div><div·class="section"><div·class="titlepage"><div><div><h3·class="title"><a·name="Secmia2dfluid"></a>mia-2dfluid</h3></div></div></div><h4><a·name="idp3240"></a>Sysnopis:</h4><div·class="cmdsynopsis"><p><code·class="command">mia-2dfluid</code>··{-i·<em·class="replaceable"><code>io</code></em>}·{-r·<em·class="replaceable"><code>io</code></em>}·[	1	<html><head><meta·http-equiv="Content-Type"·content="text/html;·charset=ISO-8859-1"><title>mia-2dfluid</title><link·rel="stylesheet"·type="text/css"·href="progref.css"><meta·name="generator"·content="DocBook·XSL·Stylesheets·Vsnapshot"><link·rel="home"·href="index.html"·title="Mia·Program·Reference"><link·rel="up"·href="SecRegistrationComparisonandTransformationof2Dimages.html"·title="Registration,·Comparison,·and·Transformation·of·2D·images"><link·rel="prev"·href="Secmia2ddeform.html"·title="mia-2ddeform"><link·rel="next"·href="Secmia2dfluidsynregistration.html"·title="mia-2dfluid-syn-registration"></head><body·bgcolor="white"·text="black"·link="#0000FF"·vlink="#840084"·alink="#0000FF"><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">mia-2dfluid</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="Secmia2ddeform.html">Prev</a> </td><th·width="60%"·align="center">Registration,·Comparison,·and·Transformation·of·2D·images</th><td·width="20%"·align="right"> <a·accesskey="n"·href="Secmia2dfluidsynregistration.html">Next</a></td></tr></table><hr></div><div·class="section"><div·class="titlepage"><div><div><h3·class="title"><a·name="Secmia2dfluid"></a>mia-2dfluid</h3></div></div></div><h4><a·name="idp3240"></a>Sysnopis:</h4><div·class="cmdsynopsis"><p><code·class="command">mia-2dfluid</code>··{-i·<em·class="replaceable"><code>io</code></em>}·{-r·<em·class="replaceable"><code>io</code></em>}·[
2	··········<em·class="replaceable"><code>options</code></em>	2	··········<em·class="replaceable"><code>options</code></em>
3	········...]</p></div><h4><a·name="idp3249"></a>Description:</h4><p·class="description">This·program·is·used·for·non-rigid·registration·based·on·fluid·dynamics.·For·reference·see·</p><p·class="citation"><a·class="ulink"·href="https://doi.org/10.1109/TMI.2002.803113"·target="_top">Wollny,·G.·and·Kruggel,·F.,·'Computational·cost·of·non-rigid·registration·algorithms··based·on·fluid·dynamics',·IEEE·Transactions·on·Medical·Imaging,·11(8),·pp.·946-952,·2002.</a></p><p·class="description">It·uses·SSD·as·the·sole·registration·criterion.</p><h4><a·name="idp3253"></a>Options:</h4><h4><a·name="idp3254"></a>File-IO</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-image=(~~req~~uired,·in~~put~~);·io</span></dt><dd><p>input·(test)·image·to·be·registered.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd><dt><span·class="term">-r,·--ref[·...·truncated·by·diffoscope;·len:·23,·SHA:·d8~~cff23~~466c~~0688127f76~~e~~d31b~~c7fb~~8fdfe59d3~~4~~c3fc~~f~~1ecbc~~5f~~7daa~~30~~f89e~~c5·...·]);·io</span></dt><dd><p>reference·image.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd><dt><span·class="term">-o,·--out-transformation=(output);·io</span></dt><dd><p>output·transformation·comprising·the·registration.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dvfio.html"·title="Plugin·type:·2dvf/io">Plugin·type:·2dvf/io</a></p></dd><dt><span·class="term">-d,·--out-image=(output);·io</span></dt><dd><p>output·image·deformed·according·to·the·transformation.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd></dl></div><h4><a·name="idp3276"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp3327"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp3333"></a>Registration·parameters</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-m,·--mgstart=16;·uint</span></dt><dd><p>multigrid·start·size</p></dd><dt><span·class="term">-e,·--epsilon=0.001;·float</span></dt><dd><p>optimization·breaking·condition</p></dd><dt><span·class="term">--mu=1;·float</span></dt><dd><p>elasticity·parameter</p></dd><dt><span·class="term">--lambda=1;·float</span></dt><dd><p>elasticity·parameter</p></dd><dt><span·class="term">--elastic</span></dt><dd><p>use·elastic·registration</p></dd></dl></div><h4><a·name="idp3355"></a>Example:</h4><p>Register·image·test.v·to·image·ref.v·and·write·the·deformation·vector·field·regfield.v.·Start·registration·at·the·smallest·size·above·16·pixel.</p><pre·class="screen">mia-2dfluid·-i·test.v·-r·ref.v·-o·regfield.v·-s·16</pre><h4><a·name="idp3358"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="Secmia2ddeform.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecRegistrationComparisonandTransformationof2Dimages.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dfluidsynregistration.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">mia-2ddeform </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dfluid-syn-registration</td></tr></table></div></body></html>	3	········...]</p></div><h4><a·name="idp3249"></a>Description:</h4><p·class="description">This·program·is·used·for·non-rigid·registration·based·on·fluid·dynamics.·For·reference·see·</p><p·class="citation"><a·class="ulink"·href="https://doi.org/10.1109/TMI.2002.803113"·target="_top">Wollny,·G.·and·Kruggel,·F.,·'Computational·cost·of·non-rigid·registration·algorithms··based·on·fluid·dynamics',·IEEE·Transactions·on·Medical·Imaging,·11(8),·pp.·946-952,·2002.</a></p><p·class="description">It·uses·SSD·as·the·sole·registration·criterion.</p><h4><a·name="idp3253"></a>Options:</h4><h4><a·name="idp3254"></a>File-IO</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-image=(input,·required);·io</span></dt><dd><p>input·(test)·image·to·be·registered.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd><dt><span·class="term">-r,·--ref[·...·truncated·by·diffoscope;·len:·23,·SHA:·976994bcd74e031805e41c1c7287b79043e1ca4e26ef54fc05fd886f3057d0c6·...·]);·io</span></dt><dd><p>reference·image.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd><dt><span·class="term">-o,·--out-transformation=(output);·io</span></dt><dd><p>output·transformation·comprising·the·registration.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dvfio.html"·title="Plugin·type:·2dvf/io">Plugin·type:·2dvf/io</a></p></dd><dt><span·class="term">-d,·--out-image=(output);·io</span></dt><dd><p>output·image·deformed·according·to·the·transformation.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd></dl></div><h4><a·name="idp3276"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp3327"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp3333"></a>Registration·parameters</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-m,·--mgstart=16;·uint</span></dt><dd><p>multigrid·start·size</p></dd><dt><span·class="term">-e,·--epsilon=0.001;·float</span></dt><dd><p>optimization·breaking·condition</p></dd><dt><span·class="term">--mu=1;·float</span></dt><dd><p>elasticity·parameter</p></dd><dt><span·class="term">--lambda=1;·float</span></dt><dd><p>elasticity·parameter</p></dd><dt><span·class="term">--elastic</span></dt><dd><p>use·elastic·registration</p></dd></dl></div><h4><a·name="idp3355"></a>Example:</h4><p>Register·image·test.v·to·image·ref.v·and·write·the·deformation·vector·field·regfield.v.·Start·registration·at·the·smallest·size·above·16·pixel.</p><pre·class="screen">mia-2dfluid·-i·test.v·-r·ref.v·-o·regfield.v·-s·16</pre><h4><a·name="idp3358"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="Secmia2ddeform.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecRegistrationComparisonandTransformationof2Dimages.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dfluidsynregistration.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">mia-2ddeform </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dfluid-syn-registration</td></tr></table></div></body></html>


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9	reference·see	9	reference·see
10	_\x8W_\x8o_\x8l_\x8l_\x8n_\x8y_\x8,_\x8·_\x8G_\x8._\x8·_\x8a_\x8n_\x8d_\x8·_\x8K_\x8r_\x8u_\x8g_\x8g_\x8e_\x8l_\x8,_\x8·_\x8F_\x8._\x8,_\x8·_\x8'_\x8C_\x8o_\x8m_\x8p_\x8u_\x8t_\x8a_\x8t_\x8i_\x8o_\x8n_\x8a_\x8l_\x8·_\x8c_\x8o_\x8s_\x8t_\x8·_\x8o_\x8f_\x8·_\x8n_\x8o_\x8n_\x8-_\x8r_\x8i_\x8g_\x8i_\x8d_\x8·_\x8r_\x8e_\x8g_\x8i_\x8s_\x8t_\x8r_\x8a_\x8t_\x8i_\x8o_\x8n	10	_\x8W_\x8o_\x8l_\x8l_\x8n_\x8y_\x8,_\x8·_\x8G_\x8._\x8·_\x8a_\x8n_\x8d_\x8·_\x8K_\x8r_\x8u_\x8g_\x8g_\x8e_\x8l_\x8,_\x8·_\x8F_\x8._\x8,_\x8·_\x8'_\x8C_\x8o_\x8m_\x8p_\x8u_\x8t_\x8a_\x8t_\x8i_\x8o_\x8n_\x8a_\x8l_\x8·_\x8c_\x8o_\x8s_\x8t_\x8·_\x8o_\x8f_\x8·_\x8n_\x8o_\x8n_\x8-_\x8r_\x8i_\x8g_\x8i_\x8d_\x8·_\x8r_\x8e_\x8g_\x8i_\x8s_\x8t_\x8r_\x8a_\x8t_\x8i_\x8o_\x8n
11	_\x8a_\x8l_\x8g_\x8o_\x8r_\x8i_\x8t_\x8h_\x8m_\x8s_\x8·_\x8b_\x8a_\x8s_\x8e_\x8d_\x8·_\x8o_\x8n_\x8·_\x8f_\x8l_\x8u_\x8i_\x8d_\x8·_\x8d_\x8y_\x8n_\x8a_\x8m_\x8i_\x8c_\x8s_\x8'_\x8,_\x8·_\x8I_\x8E_\x8E_\x8E_\x8·_\x8T_\x8r_\x8a_\x8n_\x8s_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n_\x8s_\x8·_\x8o_\x8n_\x8·_\x8M_\x8e_\x8d_\x8i_\x8c_\x8a_\x8l_\x8·_\x8I_\x8m_\x8a_\x8g_\x8i_\x8n_\x8g_\x8,_\x8·_\x81_\x81	11	_\x8a_\x8l_\x8g_\x8o_\x8r_\x8i_\x8t_\x8h_\x8m_\x8s_\x8·_\x8b_\x8a_\x8s_\x8e_\x8d_\x8·_\x8o_\x8n_\x8·_\x8f_\x8l_\x8u_\x8i_\x8d_\x8·_\x8d_\x8y_\x8n_\x8a_\x8m_\x8i_\x8c_\x8s_\x8'_\x8,_\x8·_\x8I_\x8E_\x8E_\x8E_\x8·_\x8T_\x8r_\x8a_\x8n_\x8s_\x8a_\x8c_\x8t_\x8i_\x8o_\x8n_\x8s_\x8·_\x8o_\x8n_\x8·_\x8M_\x8e_\x8d_\x8i_\x8c_\x8a_\x8l_\x8·_\x8I_\x8m_\x8a_\x8g_\x8i_\x8n_\x8g_\x8,_\x8·_\x81_\x81
12	_\x8(_\x88_\x8)_\x8,_\x8·_\x8p_\x8p_\x8._\x8·_\x89_\x84_\x86_\x8-_\x89_\x85_\x82_\x8,_\x8·_\x82_\x80_\x80_\x82_\x8.	12	_\x8(_\x88_\x8)_\x8,_\x8·_\x8p_\x8p_\x8._\x8·_\x89_\x84_\x86_\x8-_\x89_\x85_\x82_\x8,_\x8·_\x82_\x80_\x80_\x82_\x8.
13	It·uses·SSD·as·the·sole·registration·criterion.	13	It·uses·SSD·as·the·sole·registration·criterion.
14	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	14	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
15	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O	15	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O
16	··-i,·--in-image=(~~req~~uired,·in~~put~~);·io	16	··-i,·--in-image=(input,·required);·io
17	······input·(test)·image·to·be·registered.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n	17	······input·(test)·image·to·be·registered.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n
18	······_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	18	······_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
19	··-r,·--ref-image=(~~req~~uired,·in~~put~~);·io	19	··-r,·--ref-image=(input,·required);·io
20	······reference·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	20	······reference·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
21	··-o,·--out-transformation=(output);·io	21	··-o,·--out-transformation=(output);·io
22	······output·transformation·comprising·the·registration.·For·supported·file	22	······output·transformation·comprising·the·registration.·For·supported·file
23	······types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8v_\x8f_\x8/_\x8i_\x8o	23	······types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8v_\x8f_\x8/_\x8i_\x8o
24	··-d,·--out-image=(output);·io	24	··-d,·--out-image=(output);·io
25	······output·image·deformed·according·to·the·transformation.·For·supported·file	25	······output·image·deformed·according·to·the·transformation.·For·supported·file
26	······types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	26	······types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o


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1	<html><head><meta·http-equiv="Content-Type"·content="text/html;·charset=ISO-8859-1"><title>mia-2dfluid-syn-registration</title><link·rel="stylesheet"·type="text/css"·href="progref.css"><meta·name="generator"·content="DocBook·XSL·Stylesheets·Vsnapshot"><link·rel="home"·href="index.html"·title="Mia·Program·Reference"><link·rel="up"·href="SecRegistrationComparisonandTransformationof2Dimages.html"·title="Registration,·Comparison,·and·Transformation·of·2D·images"><link·rel="prev"·href="Secmia2dfluid.html"·title="mia-2dfluid"><link·rel="next"·href="Secmia2dforce.html"·title="mia-2dforce"></head><body·bgcolor="white"·text="black"·link="#0000FF"·vlink="#840084"·alink="#0000FF"><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">mia-2dfluid-syn-registration</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="Secmia2dfluid.html">Prev</a> </td><th·width="60%"·align="center">Registration,·Comparison,·and·Transformation·of·2D·images</th><td·width="20%"·align="right"> <a·accesskey="n"·href="Secmia2dforce.html">Next</a></td></tr></table><hr></div><div·class="section"><div·class="titlepage"><div><div><h3·class="title"><a·name="Secmia2dfluidsynregistration"></a>mia-2dfluid-syn-registration</h3></div></div></div><h4><a·name="idp3362"></a>Sysnopis:</h4><div·class="cmdsynopsis"><p><code·class="command">mia-2dfluid-syn-registration</code>··{-i·<em·class="replaceable"><code>io</code></em>}·{-r·<em·class="replaceable"><code>io</code></em>}·{-o·<em·class="replaceable"><code>io</code></em>}·{-O·<em·class="replaceable"><code>io</code></em>}·[	1	<html><head><meta·http-equiv="Content-Type"·content="text/html;·charset=ISO-8859-1"><title>mia-2dfluid-syn-registration</title><link·rel="stylesheet"·type="text/css"·href="progref.css"><meta·name="generator"·content="DocBook·XSL·Stylesheets·Vsnapshot"><link·rel="home"·href="index.html"·title="Mia·Program·Reference"><link·rel="up"·href="SecRegistrationComparisonandTransformationof2Dimages.html"·title="Registration,·Comparison,·and·Transformation·of·2D·images"><link·rel="prev"·href="Secmia2dfluid.html"·title="mia-2dfluid"><link·rel="next"·href="Secmia2dforce.html"·title="mia-2dforce"></head><body·bgcolor="white"·text="black"·link="#0000FF"·vlink="#840084"·alink="#0000FF"><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">mia-2dfluid-syn-registration</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="Secmia2dfluid.html">Prev</a> </td><th·width="60%"·align="center">Registration,·Comparison,·and·Transformation·of·2D·images</th><td·width="20%"·align="right"> <a·accesskey="n"·href="Secmia2dforce.html">Next</a></td></tr></table><hr></div><div·class="section"><div·class="titlepage"><div><div><h3·class="title"><a·name="Secmia2dfluidsynregistration"></a>mia-2dfluid-syn-registration</h3></div></div></div><h4><a·name="idp3362"></a>Sysnopis:</h4><div·class="cmdsynopsis"><p><code·class="command">mia-2dfluid-syn-registration</code>··{-i·<em·class="replaceable"><code>io</code></em>}·{-r·<em·class="replaceable"><code>io</code></em>}·{-o·<em·class="replaceable"><code>io</code></em>}·{-O·<em·class="replaceable"><code>io</code></em>}·[
2	··········<em·class="replaceable"><code>options</code></em>	2	··········<em·class="replaceable"><code>options</code></em>
3	········...]</p></div><h4><a·name="idp3375"></a>Description:</h4><p·class="description">This·program·implements·the·registration·of·two·gray·scale·2D·images.·The·transformation·applied·is·a·symmeric·diffeomorpic·fluid·dynamic·registration.·To·work·most·efficiently,·this·program·makes·a·few·assumptions·about·the·imput·data,·i.e.·the·image·must·be·of·the·same·size,·have·the·same·voxel·spacing,·and·any·intensity·range·normalization·or·equalization·should·also·be·done·before·calling·this·program.</p><h4><a·name="idp3377"></a>Options:</h4><h4><a·name="idp3378"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp3429"></a>IO</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-image=(~~req~~uired,·in~~put~~);·io</span></dt><dd><p>test·image.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd><dt><span·class="term">-r,·--ref-image=(~~req~~uired,·in~~put~~);[·...·truncated·by·diffoscope;·len:·514,·SHA:·757e5b6~~448b34d47~~6~~f00b~~7~~d8be7~~b9~~54f~~965~~6d631a29d7~~7f~~f0490e~~f~~90c2c33642~~·...·]);·io</span></dt><dd><p>inverse·output·transformation.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dtransformio.html"·title="Plugin·type:·2dtransform/io">Plugin·type:·2dtransform/io</a></p></dd></dl></div><h4><a·name="idp3451"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp3457"></a>Registration</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-l,·--mg-levels=3;·uint</span></dt><dd><p>Number·of·multi-resolution·levels·to·run·the·registration·on.·Not·that·some·registration·parameters·can·be·given·as·a·coma·seperated·list·to·indicate·per·level·values.·In·these·cases··if·the·number·of·given·values·is·smaller·than·the·number·of·multi-resolution·levels·(this·parameter),·the·the·last·given·value·is·used·for·all·subsequest·multi-resolution·levels.</p></dd><dt><span·class="term">-S,·--step=0.25;·float·in·(0,·0.5]</span></dt><dd><p>Initial·step·size·for·all·levels</p></dd><dt><span·class="term">-c,·--cost=ssd;·factory</span></dt><dd><p>Image·similarity·function·to·be·minimized.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype2dimagecost.html"·title="Plugin·type:·2dimage/cost">Plugin·type:·2dimage/cost</a></p></dd><dt><span·class="term">-R,·--regularizer=sor:kernel=fluid,maxiter=50;·factory</span></dt><dd><p>Regularization·for·the·force·to·transformation·update.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype2dvfregularizer.html"·title="Plugin·type:·2dvf/regularizer">Plugin·type:·2dvf/regularizer</a></p></dd><dt><span·class="term">-T,·--conv-test-interval=·in·[4,·40]</span></dt><dd><p>Convergence·test·interations·intervall:·In·order·to·measure·convergence·the·cost·function·value·is·averaged·over·this·amount·of·iterations,·and·the·decline·rate·is·evaluated·based·on·the·linare·regression·of·the·cost·function·values·in·this·intervall.·This·parameter·can·be·given·as·a·coma-seperated·list·with·values·corresponding·to·the·multi-resolution·levels,·see·option·--mg-levels·for·more·information.</p></dd><dt><span·class="term">-D,·--stop-decline-rate=·in·[0,·inf)</span></dt><dd><p>Stopping·criterium·for·registration·based·on·the·cost·decline·rate.·If·the·rate·below·this·value,·the·iteration·is·stopped.·This·parameter·can·be·given·as·a·coma-seperated·list·with·values·corresponding·to·the·multi-resolution·levels,·see·option·--mg-levels·for·more·information.</p></dd><dt><span·class="term">-C,·--stop-cost=</span></dt><dd><p>Stopping·criterium·for·registration·based·on·the·cost·value.·If·the·cost·drops·below·this·value,·the·iteration·is·stopped.·This·parameter·can·be·given·as·a·coma-seperated·list·with·values·corresponding·to·the·multi-resolution·levels,·see·option·--mg-levels·for·more·information.</p></dd><dt><span·class="term">-I,·--iter=·in·[4,·inf)</span></dt><dd><p>Naximum·number·if·iterations·done·on·each·multi-resolution·level.·This·parameter·can·be·given·as·a·coma-seperated·list·with·values·corresponding·to·the·multi-resolution·levels,·see·option·--mg-levels·for·more·information.</p></dd></dl></div><h4><a·name="idp3493"></a>Example:</h4><p>Register·image·test.v·to·image·ref.v·saving·the·transformation·to·transform.v·and·the·inverse·transform·to·inverse-transform.v.·Use·three·multiresolution·levels,·ssd·as·image·cost·function.</p><pre·class="screen">mia-2dfluid-syn-registration·-i·test.v·-r·ref.v·-t·transform.v·-T·inverse-transform.v··-l·3·ssd</pre><h4><a·name="idp3496"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="Secmia2dfluid.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecRegistrationComparisonandTransformationof2Dimages.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dforce.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">mia-2dfluid </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dforce</td></tr></table></div></body></html>	3	········...]</p></div><h4><a·name="idp3375"></a>Description:</h4><p·class="description">This·program·implements·the·registration·of·two·gray·scale·2D·images.·The·transformation·applied·is·a·symmeric·diffeomorpic·fluid·dynamic·registration.·To·work·most·efficiently,·this·program·makes·a·few·assumptions·about·the·imput·data,·i.e.·the·image·must·be·of·the·same·size,·have·the·same·voxel·spacing,·and·any·intensity·range·normalization·or·equalization·should·also·be·done·before·calling·this·program.</p><h4><a·name="idp3377"></a>Options:</h4><h4><a·name="idp3378"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp3429"></a>IO</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-image=(input,·required);·io</span></dt><dd><p>test·image.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd><dt><span·class="term">-r,·--ref-image=(input,·required);[·...·truncated·by·diffoscope;·len:·514,·SHA:·73375cab0665531ccdb69d47753f23be0a96f797938e327eb1be4fca789111f5·...·]);·io</span></dt><dd><p>inverse·output·transformation.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dtransformio.html"·title="Plugin·type:·2dtransform/io">Plugin·type:·2dtransform/io</a></p></dd></dl></div><h4><a·name="idp3451"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp3457"></a>Registration</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-l,·--mg-levels=3;·uint</span></dt><dd><p>Number·of·multi-resolution·levels·to·run·the·registration·on.·Not·that·some·registration·parameters·can·be·given·as·a·coma·seperated·list·to·indicate·per·level·values.·In·these·cases··if·the·number·of·given·values·is·smaller·than·the·number·of·multi-resolution·levels·(this·parameter),·the·the·last·given·value·is·used·for·all·subsequest·multi-resolution·levels.</p></dd><dt><span·class="term">-S,·--step=0.25;·float·in·(0,·0.5]</span></dt><dd><p>Initial·step·size·for·all·levels</p></dd><dt><span·class="term">-c,·--cost=ssd;·factory</span></dt><dd><p>Image·similarity·function·to·be·minimized.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype2dimagecost.html"·title="Plugin·type:·2dimage/cost">Plugin·type:·2dimage/cost</a></p></dd><dt><span·class="term">-R,·--regularizer=sor:kernel=fluid,maxiter=50;·factory</span></dt><dd><p>Regularization·for·the·force·to·transformation·update.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype2dvfregularizer.html"·title="Plugin·type:·2dvf/regularizer">Plugin·type:·2dvf/regularizer</a></p></dd><dt><span·class="term">-T,·--conv-test-interval=·in·[4,·40]</span></dt><dd><p>Convergence·test·interations·intervall:·In·order·to·measure·convergence·the·cost·function·value·is·averaged·over·this·amount·of·iterations,·and·the·decline·rate·is·evaluated·based·on·the·linare·regression·of·the·cost·function·values·in·this·intervall.·This·parameter·can·be·given·as·a·coma-seperated·list·with·values·corresponding·to·the·multi-resolution·levels,·see·option·--mg-levels·for·more·information.</p></dd><dt><span·class="term">-D,·--stop-decline-rate=·in·[0,·inf)</span></dt><dd><p>Stopping·criterium·for·registration·based·on·the·cost·decline·rate.·If·the·rate·below·this·value,·the·iteration·is·stopped.·This·parameter·can·be·given·as·a·coma-seperated·list·with·values·corresponding·to·the·multi-resolution·levels,·see·option·--mg-levels·for·more·information.</p></dd><dt><span·class="term">-C,·--stop-cost=</span></dt><dd><p>Stopping·criterium·for·registration·based·on·the·cost·value.·If·the·cost·drops·below·this·value,·the·iteration·is·stopped.·This·parameter·can·be·given·as·a·coma-seperated·list·with·values·corresponding·to·the·multi-resolution·levels,·see·option·--mg-levels·for·more·information.</p></dd><dt><span·class="term">-I,·--iter=·in·[4,·inf)</span></dt><dd><p>Naximum·number·if·iterations·done·on·each·multi-resolution·level.·This·parameter·can·be·given·as·a·coma-seperated·list·with·values·corresponding·to·the·multi-resolution·levels,·see·option·--mg-levels·for·more·information.</p></dd></dl></div><h4><a·name="idp3493"></a>Example:</h4><p>Register·image·test.v·to·image·ref.v·saving·the·transformation·to·transform.v·and·the·inverse·transform·to·inverse-transform.v.·Use·three·multiresolution·levels,·ssd·as·image·cost·function.</p><pre·class="screen">mia-2dfluid-syn-registration·-i·test.v·-r·ref.v·-t·transform.v·-T·inverse-transform.v··-l·3·ssd</pre><h4><a·name="idp3496"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="Secmia2dfluid.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecRegistrationComparisonandTransformationof2Dimages.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dforce.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">mia-2dfluid </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dforce</td></tr></table></div></body></html>


Offset 29, 22 lines modified		Offset 29, 22 lines modified
29	··-h,·--help=();·bool	29	··-h,·--help=();·bool
30	······print·this·help	30	······print·this·help
31	··-?,·--usage=();·bool	31	··-?,·--usage=();·bool
32	······print·a·short·help	32	······print·a·short·help
33	··--version=();·bool	33	··--version=();·bool
34	······print·the·version·number·and·exit	34	······print·the·version·number·and·exit
35	I\x8IO\x8O	35	I\x8IO\x8O
36	··-i,·--in-image=(~~req~~uired,·in~~put~~);·io	36	··-i,·--in-image=(input,·required);·io
37	······test·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	37	······test·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
38	··-r,·--ref-image=(~~req~~uired,·in~~put~~);·io	38	··-r,·--ref-image=(input,·required);·io
39	······reference·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	39	······reference·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
40	··-o,·--transform=(ou~~tput~~,·requ~~ired~~);·io	40	··-o,·--transform=(required,·output);·io
41	······output·transformation.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	41	······output·transformation.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
42	······_\x82_\x8d_\x8t_\x8r_\x8a_\x8n_\x8s_\x8f_\x8o_\x8r_\x8m_\x8/_\x8i_\x8o	42	······_\x82_\x8d_\x8t_\x8r_\x8a_\x8n_\x8s_\x8f_\x8o_\x8r_\x8m_\x8/_\x8i_\x8o
43	··-O,·--inverse-transform=(ou~~tput~~,·requ~~ired~~);·io	43	··-O,·--inverse-transform=(required,·output);·io
44	······inverse·output·transformation.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	44	······inverse·output·transformation.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
45	······_\x82_\x8d_\x8t_\x8r_\x8a_\x8n_\x8s_\x8f_\x8o_\x8r_\x8m_\x8/_\x8i_\x8o	45	······_\x82_\x8d_\x8t_\x8r_\x8a_\x8n_\x8s_\x8f_\x8o_\x8r_\x8m_\x8/_\x8i_\x8o
46	P\x8Pr\x8ro\x8oc\x8ce\x8es\x8ss\x8si\x8in\x8ng\x8g	46	P\x8Pr\x8ro\x8oc\x8ce\x8es\x8ss\x8si\x8in\x8ng\x8g
47	··--threads=-1;·int	47	··--threads=-1;·int
48	······Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be	48	······Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be
49	······lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.	49	······lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.
50	······(-1:·automatic·estimation).	50	······(-1:·automatic·estimation).


Offset 4, 19 lines modified		Offset 4, 19 lines modified
4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8df\x8fo\x8or\x8rc\x8ce\x8e	4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8df\x8fo\x8or\x8rc\x8ce\x8e
5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:	5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:
6	mia-2dforce·{-i·i\x8io\x8o}·{-r·i\x8io\x8o}·{-o·i\x8io\x8o}·{-c·s\x8st\x8tr\x8ri\x8in\x8ng\x8g}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]	6	mia-2dforce·{-i·i\x8io\x8o}·{-r·i\x8io\x8o}·{-o·i\x8io\x8o}·{-c·s\x8st\x8tr\x8ri\x8in\x8ng\x8g}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	This·image·evaluate·the·force·field·between·two·images·based·on·a·given·cost	8	This·image·evaluate·the·force·field·between·two·images·based·on·a·given·cost
9	function.	9	function.
10	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	10	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
11	··-i,·--src-file=(~~req~~uired,·in~~put~~);·io	11	··-i,·--src-file=(input,·required);·io
12	······input·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	12	······input·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
13	··-r,·--ref-file=(~~req~~uired,·in~~put~~);·io	13	··-r,·--ref-file=(input,·required);·io
14	······reference·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	14	······reference·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
15	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·io	15	··-o,·--out-file=(required,·output);·io
16	······output·force·norm·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	16	······output·force·norm·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
17	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	17	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
18	··-c,·--cost=(required);·string	18	··-c,·--cost=(required);·string
19	······cost·function·to·use	19	······cost·function·to·use
20	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o	20	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o
21	··-V,·--verbose=warning;·dict	21	··-V,·--verbose=warning;·dict
22	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.	22	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.


Offset 7, 15 lines modified		Offset 7, 15 lines modified
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	This·program·runs·a·combined·fuzzy·c-means·clustering·and·B-field·correction·to	8	This·program·runs·a·combined·fuzzy·c-means·clustering·and·B-field·correction·to
9	facilitate·a·fuzzy·segmentation·of·2D·image.·cf·D.L.·Pham·and·J.L.Prince,·"An	9	facilitate·a·fuzzy·segmentation·of·2D·image.·cf·D.L.·Pham·and·J.L.Prince,·"An
10	adaptive·fuzzy·C-means·algorithm·for·image·segmentation·in·the·presence·of	10	adaptive·fuzzy·C-means·algorithm·for·image·segmentation·in·the·presence·of
11	intensity·inhomogeneities",·Pat.·Rec.·Let.,·20:57-68,1999	11	intensity·inhomogeneities",·Pat.·Rec.·Let.,·20:57-68,1999
12	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	12	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
13	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O	13	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O
14	··-i,·--in-file=(~~req~~uired,·in~~put~~);·io	14	··-i,·--in-file=(input,·required);·io
15	······input·image(s)·to·be·segmenetd.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	15	······input·image(s)·to·be·segmenetd.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
16	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	16	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
17	··-c,·--cls-file=(output);·io	17	··-c,·--cls-file=(output);·io
18	······output·class·probability·images·(floating·point·values·and·multi-image).	18	······output·class·probability·images·(floating·point·values·and·multi-image).
19	······For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	19	······For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
20	··-o,·--b0-file=(output);·io	20	··-o,·--b0-file=(output);·io
21	······image·corrected·for·intensity·non-uniformity.·For·supported·file·types	21	······image·corrected·for·intensity·non-uniformity.·For·supported·file·types


Offset 15, 15 lines modified		Offset 15, 15 lines modified
15	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	15	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
16	··-g,·--green=(input);·io	16	··-g,·--green=(input);·io
17	······input·image·for·green·channel.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	17	······input·image·for·green·channel.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
18	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	18	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
19	··-r,·--red=(input);·io	19	··-r,·--red=(input);·io
20	······input·image·for·red·channel.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	20	······input·image·for·red·channel.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
21	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	21	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
22	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·io	22	··-o,·--out-file=(required,·output);·io
23	······combined·output·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/	23	······combined·output·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/
24	······_\x8i_\x8o	24	······_\x8i_\x8o
25	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o	25	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o
26	··-V,·--verbose=warning;·dict	26	··-V,·--verbose=warning;·dict
27	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.	27	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.
28	······Supported·priorities·starting·at·lowest·level·are:	28	······Supported·priorities·starting·at·lowest·level·are:
29	······trace:···Function·call·trace	29	······trace:···Function·call·trace


Offset 1, 7 lines modified		Offset 1, 7 lines modified
1	<html><head><meta·http-equiv="Content-Type"·content="text/html;·charset=ISO-8859-1"><title>mia-2dgroundtruthreg</title><link·rel="stylesheet"·type="text/css"·href="progref.css"><meta·name="generator"·content="DocBook·XSL·Stylesheets·Vsnapshot"><link·rel="home"·href="index.html"·title="Mia·Program·Reference"><link·rel="up"·href="SecRegistrationofseriesof2Dimages.html"·title="Registration·of·series·of·2D·images"><link·rel="prev"·href="SecRegistrationofseriesof2Dimages.html"·title="Registration·of·series·of·2D·images"><link·rel="next"·href="Secmia2dmany2onenonrigid.html"·title="mia-2dmany2one-nonrigid"></head><body·bgcolor="white"·text="black"·link="#0000FF"·vlink="#840084"·alink="#0000FF"><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">mia-2dgroundtruthreg</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="SecRegistrationofseriesof2Dimages.html">Prev</a> </td><th·width="60%"·align="center">Registration·of·series·of·2D·images</th><td·width="20%"·align="right"> <a·accesskey="n"·href="Secmia2dmany2onenonrigid.html">Next</a></td></tr></table><hr></div><div·class="section"><div·class="titlepage"><div><div><h3·class="title"><a·name="Secmia2dgroundtruthreg"></a>mia-2dgroundtruthreg</h3></div></div></div><h4><a·name="idp4145"></a>Sysnopis:</h4><div·class="cmdsynopsis"><p><code·class="command">mia-2dgroundtruthreg</code>··{-i·<em·class="replaceable"><code>string</code></em>}·{-o·<em·class="replaceable"><code>string</code></em>}·{-A·<em·class="replaceable"><code>double</code></em>}·{-B·<em·class="replaceable"><code>double</code></em>}·{-R·<em·class="replaceable"><code>double</code></em>}·[	1	<html><head><meta·http-equiv="Content-Type"·content="text/html;·charset=ISO-8859-1"><title>mia-2dgroundtruthreg</title><link·rel="stylesheet"·type="text/css"·href="progref.css"><meta·name="generator"·content="DocBook·XSL·Stylesheets·Vsnapshot"><link·rel="home"·href="index.html"·title="Mia·Program·Reference"><link·rel="up"·href="SecRegistrationofseriesof2Dimages.html"·title="Registration·of·series·of·2D·images"><link·rel="prev"·href="SecRegistrationofseriesof2Dimages.html"·title="Registration·of·series·of·2D·images"><link·rel="next"·href="Secmia2dmany2onenonrigid.html"·title="mia-2dmany2one-nonrigid"></head><body·bgcolor="white"·text="black"·link="#0000FF"·vlink="#840084"·alink="#0000FF"><div·class="navheader"><table·width="100%"·summary="Navigation·header"><tr><th·colspan="3"·align="center">mia-2dgroundtruthreg</th></tr><tr><td·width="20%"·align="left"><a·accesskey="p"·href="SecRegistrationofseriesof2Dimages.html">Prev</a> </td><th·width="60%"·align="center">Registration·of·series·of·2D·images</th><td·width="20%"·align="right"> <a·accesskey="n"·href="Secmia2dmany2onenonrigid.html">Next</a></td></tr></table><hr></div><div·class="section"><div·class="titlepage"><div><div><h3·class="title"><a·name="Secmia2dgroundtruthreg"></a>mia-2dgroundtruthreg</h3></div></div></div><h4><a·name="idp4145"></a>Sysnopis:</h4><div·class="cmdsynopsis"><p><code·class="command">mia-2dgroundtruthreg</code>··{-i·<em·class="replaceable"><code>string</code></em>}·{-o·<em·class="replaceable"><code>string</code></em>}·{-A·<em·class="replaceable"><code>double</code></em>}·{-B·<em·class="replaceable"><code>double</code></em>}·{-R·<em·class="replaceable"><code>double</code></em>}·[
2	··········<em·class="replaceable"><code>options</code></em>	2	··········<em·class="replaceable"><code>options</code></em>
3	········...]</p></div><h4><a·name="idp4160"></a>Description:</h4><p·class="description">This·program·implements·the·non-linear·registration·based·on·Pseudo·Ground·Thruth·for·motion·compensation·of·series·of·myocardial·perfusion·images·as·described·in·</p><p·class="citation"><a·class="ulink"·href="https://doi.org/10.1007/978-3-642-04268-3_21"·target="_top">Chao·Li·and·Ying·Sun,·'Nonrigid·Registration·of·Myocardial·Perfusion·MRI·Using·Pseudo·Ground·Truth'·,·In·Proc.·Medical·Image·Computing·and·Computer-Assisted·Intervention·MICCAI·2009,·165-172,·2009.</a></p><p·class="description">·Note·that·for·this·nonlinear·motion·correction·a·preceding·linear·registration·step·is·usually·required.</p><h4><a·name="idp4164"></a>Options:</h4><h4><a·name="idp4165"></a>	3	········...]</p></div><h4><a·name="idp4160"></a>Description:</h4><p·class="description">This·program·implements·the·non-linear·registration·based·on·Pseudo·Ground·Thruth·for·motion·compensation·of·series·of·myocardial·perfusion·images·as·described·in·</p><p·class="citation"><a·class="ulink"·href="https://doi.org/10.1007/978-3-642-04268-3_21"·target="_top">Chao·Li·and·Ying·Sun,·'Nonrigid·Registration·of·Myocardial·Perfusion·MRI·Using·Pseudo·Ground·Truth'·,·In·Proc.·Medical·Image·Computing·and·Computer-Assisted·Intervention·MICCAI·2009,·165-172,·2009.</a></p><p·class="description">·Note·that·for·this·nonlinear·motion·correction·a·preceding·linear·registration·step·is·usually·required.</p><h4><a·name="idp4164"></a>Options:</h4><h4><a·name="idp4165"></a>
4	File-IO</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-file=(~~req~~uired,·in~~put~~);·string</span></dt><dd><p>input·perfusion·data·set</p></dd><dt><span·class="term">-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·string</span></dt><dd><p>output·perfusion·data·set</p></dd><dt><span·class="term">-r,·--registered=reg;·stringSTRING</span></dt><dd><p>file·name·base·for·registered·files</p></dd></dl></div><h4><a·name="idp4179"></a>	4	File-IO</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-file=(input,·required);·string</span></dt><dd><p>input·perfusion·data·set</p></dd><dt><span·class="term">-o,·--out-file=(required,·output);·string</span></dt><dd><p>output·perfusion·data·set</p></dd><dt><span·class="term">-r,·--registered=reg;·stringSTRING</span></dt><dd><p>file·name·base·for·registered·files</p></dd></dl></div><h4><a·name="idp4179"></a>
5	Preconditions</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-s,·--skip=2;·ulong</span></dt><dd><p>skip·images·at·beginning·of·series</p></dd><dt><span·class="term">-P,·--passes=4;·ulong</span></dt><dd><p>number·of·registration·passes</p></dd></dl></div><h4><a·name="idp4189"></a>	5	Preconditions</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-s,·--skip=2;·ulong</span></dt><dd><p>skip·images·at·beginning·of·series</p></dd><dt><span·class="term">-P,·--passes=4;·ulong</span></dt><dd><p>number·of·registration·passes</p></dd></dl></div><h4><a·name="idp4189"></a>
6	Pseudo-Ground-Thruth</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-A,·--alpha=(required);·double</span></dt><dd><p>spacial·neighborhood·penalty·weight</p></dd><dt><span·class="term">-B,·--beta=(required);·double</span></dt><dd><p>temporal·second·derivative·penalty·weight</p></dd><dt><span·class="term">-R,·--rho_thresh=(required);·double</span></dt><dd><p>correlation·threshold·for·neighborhood·analysis</p></dd></dl></div><h4><a·name="idp4203"></a>	6	Pseudo-Ground-Thruth</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-A,·--alpha=(required);·double</span></dt><dd><p>spacial·neighborhood·penalty·weight</p></dd><dt><span·class="term">-B,·--beta=(required);·double</span></dt><dd><p>temporal·second·derivative·penalty·weight</p></dd><dt><span·class="term">-R,·--rho_thresh=(required);·double</span></dt><dd><p>correlation·threshold·for·neighborhood·analysis</p></dd></dl></div><h4><a·name="idp4203"></a>
7	Registration</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-O,·--optimizer=gsl:opt=gd,step=0.1;·factory</span></dt><dd><p>Optimizer·used·for·minimization.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintypeminimizersinglecost.html"·title="Plugin·type:·minimizer/singlecost">Plugin·type:·minimizer/singlecost</a></p></dd><dt><span·class="term">-p,·--interpolator=bspline:d=3;·factory</span></dt><dd><p>image·interpolator·kernel.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype1dsplinekernel.html"·title="Plugin·type:·1d/splinekernel">Plugin·type:·1d/splinekernel</a></p></dd><dt><span·class="term">-l,·--mr-levels=3;·ulong</span></dt><dd><p>multi-resolution·levels</p></dd><dt><span·class="term">-d,·--divcurl=20;·double</span></dt><dd><p>divcurl·regularization·weight</p></dd><dt><span·class="term">--divcurl-divider=4;·double</span></dt><dd><p>divcurl·weight·scaling·with·each·new·pass</p></dd><dt><span·class="term">-a,·--start-c-rate=32;·ulong</span></dt><dd><p>start·coefficinet·rate·in·spines,·gets·divided·by·--c-rate-divider·with·every·pass</p></dd><dt><span·class="term">--c-rate-divider=4;·double</span></dt><dd><p>cofficient·rate·divider·for·each·pass</p></dd><dt><span·class="term">-w,·--imageweight=1;·double</span></dt><dd><p>image·cost·weight</p></dd></dl></div><h4><a·name="idp4239"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp4290"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp4296"></a>Example:</h4><p>Register·the·perfusion·series·given·by·images·imageXXXX.exr·by·using·Pseudo·Ground·Truth·estimation.·Skip·two·images·at·the·beginning·and·otherwiese·use·the·default·parameters.·Store·the·result·images·to··'regXXXX.exr'.</p><pre·class="screen">mia-2dgroundtruthreg·-i·imageXXXX.exr·-o·regXXXX.exr·-k·2</pre><h4><a·name="idp4299"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="SecRegistrationofseriesof2Dimages.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecRegistrationofseriesof2Dimages.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dmany2onenonrigid.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Registration·of·series·of·2D·images </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dmany2one-nonrigid</td></tr></table></div></body></html>	7	Registration</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-O,·--optimizer=gsl:opt=gd,step=0.1;·factory</span></dt><dd><p>Optimizer·used·for·minimization.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintypeminimizersinglecost.html"·title="Plugin·type:·minimizer/singlecost">Plugin·type:·minimizer/singlecost</a></p></dd><dt><span·class="term">-p,·--interpolator=bspline:d=3;·factory</span></dt><dd><p>image·interpolator·kernel.·For·supported·plug-ins·see·<a·class="xref"·href="SecPlugintype1dsplinekernel.html"·title="Plugin·type:·1d/splinekernel">Plugin·type:·1d/splinekernel</a></p></dd><dt><span·class="term">-l,·--mr-levels=3;·ulong</span></dt><dd><p>multi-resolution·levels</p></dd><dt><span·class="term">-d,·--divcurl=20;·double</span></dt><dd><p>divcurl·regularization·weight</p></dd><dt><span·class="term">--divcurl-divider=4;·double</span></dt><dd><p>divcurl·weight·scaling·with·each·new·pass</p></dd><dt><span·class="term">-a,·--start-c-rate=32;·ulong</span></dt><dd><p>start·coefficinet·rate·in·spines,·gets·divided·by·--c-rate-divider·with·every·pass</p></dd><dt><span·class="term">--c-rate-divider=4;·double</span></dt><dd><p>cofficient·rate·divider·for·each·pass</p></dd><dt><span·class="term">-w,·--imageweight=1;·double</span></dt><dd><p>image·cost·weight</p></dd></dl></div><h4><a·name="idp4239"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp4290"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp4296"></a>Example:</h4><p>Register·the·perfusion·series·given·by·images·imageXXXX.exr·by·using·Pseudo·Ground·Truth·estimation.·Skip·two·images·at·the·beginning·and·otherwiese·use·the·default·parameters.·Store·the·result·images·to··'regXXXX.exr'.</p><pre·class="screen">mia-2dgroundtruthreg·-i·imageXXXX.exr·-o·regXXXX.exr·-k·2</pre><h4><a·name="idp4299"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="SecRegistrationofseriesof2Dimages.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecRegistrationofseriesof2Dimages.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dmany2onenonrigid.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">Registration·of·series·of·2D·images </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dmany2one-nonrigid</td></tr></table></div></body></html>


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12	_\x8C_\x8h_\x8a_\x8o_\x8·_\x8L_\x8i_\x8·_\x8a_\x8n_\x8d_\x8·_\x8Y_\x8i_\x8n_\x8g_\x8·_\x8S_\x8u_\x8n_\x8,_\x8·_\x8'_\x8N_\x8o_\x8n_\x8r_\x8i_\x8g_\x8i_\x8d_\x8·_\x8R_\x8e_\x8g_\x8i_\x8s_\x8t_\x8r_\x8a_\x8t_\x8i_\x8o_\x8n_\x8·_\x8o_\x8f_\x8·_\x8M_\x8y_\x8o_\x8c_\x8a_\x8r_\x8d_\x8i_\x8a_\x8l_\x8·_\x8P_\x8e_\x8r_\x8f_\x8u_\x8s_\x8i_\x8o_\x8n_\x8·_\x8M_\x8R_\x8I_\x8·_\x8U_\x8s_\x8i_\x8n_\x8g	12	_\x8C_\x8h_\x8a_\x8o_\x8·_\x8L_\x8i_\x8·_\x8a_\x8n_\x8d_\x8·_\x8Y_\x8i_\x8n_\x8g_\x8·_\x8S_\x8u_\x8n_\x8,_\x8·_\x8'_\x8N_\x8o_\x8n_\x8r_\x8i_\x8g_\x8i_\x8d_\x8·_\x8R_\x8e_\x8g_\x8i_\x8s_\x8t_\x8r_\x8a_\x8t_\x8i_\x8o_\x8n_\x8·_\x8o_\x8f_\x8·_\x8M_\x8y_\x8o_\x8c_\x8a_\x8r_\x8d_\x8i_\x8a_\x8l_\x8·_\x8P_\x8e_\x8r_\x8f_\x8u_\x8s_\x8i_\x8o_\x8n_\x8·_\x8M_\x8R_\x8I_\x8·_\x8U_\x8s_\x8i_\x8n_\x8g
13	_\x8P_\x8s_\x8e_\x8u_\x8d_\x8o_\x8·_\x8G_\x8r_\x8o_\x8u_\x8n_\x8d_\x8·_\x8T_\x8r_\x8u_\x8t_\x8h_\x8'_\x8·_\x8,_\x8·_\x8I_\x8n_\x8·_\x8P_\x8r_\x8o_\x8c_\x8._\x8·_\x8M_\x8e_\x8d_\x8i_\x8c_\x8a_\x8l_\x8·_\x8I_\x8m_\x8a_\x8g_\x8e_\x8·_\x8C_\x8o_\x8m_\x8p_\x8u_\x8t_\x8i_\x8n_\x8g_\x8·_\x8a_\x8n_\x8d_\x8·_\x8C_\x8o_\x8m_\x8p_\x8u_\x8t_\x8e_\x8r_\x8-_\x8A_\x8s_\x8s_\x8i_\x8s_\x8t_\x8e_\x8d	13	_\x8P_\x8s_\x8e_\x8u_\x8d_\x8o_\x8·_\x8G_\x8r_\x8o_\x8u_\x8n_\x8d_\x8·_\x8T_\x8r_\x8u_\x8t_\x8h_\x8'_\x8·_\x8,_\x8·_\x8I_\x8n_\x8·_\x8P_\x8r_\x8o_\x8c_\x8._\x8·_\x8M_\x8e_\x8d_\x8i_\x8c_\x8a_\x8l_\x8·_\x8I_\x8m_\x8a_\x8g_\x8e_\x8·_\x8C_\x8o_\x8m_\x8p_\x8u_\x8t_\x8i_\x8n_\x8g_\x8·_\x8a_\x8n_\x8d_\x8·_\x8C_\x8o_\x8m_\x8p_\x8u_\x8t_\x8e_\x8r_\x8-_\x8A_\x8s_\x8s_\x8i_\x8s_\x8t_\x8e_\x8d
14	_\x8I_\x8n_\x8t_\x8e_\x8r_\x8v_\x8e_\x8n_\x8t_\x8i_\x8o_\x8n_\x8·_\x8M_\x8I_\x8C_\x8C_\x8A_\x8I_\x8·_\x82_\x80_\x80_\x89_\x8,_\x8·_\x81_\x86_\x85_\x8-_\x81_\x87_\x82_\x8,_\x8·_\x82_\x80_\x80_\x89_\x8.	14	_\x8I_\x8n_\x8t_\x8e_\x8r_\x8v_\x8e_\x8n_\x8t_\x8i_\x8o_\x8n_\x8·_\x8M_\x8I_\x8C_\x8C_\x8A_\x8I_\x8·_\x82_\x80_\x80_\x89_\x8,_\x8·_\x81_\x86_\x85_\x8-_\x81_\x87_\x82_\x8,_\x8·_\x82_\x80_\x80_\x89_\x8.
15	Note·that·for·this·nonlinear·motion·correction·a·preceding·linear·registration	15	Note·that·for·this·nonlinear·motion·correction·a·preceding·linear·registration
16	step·is·usually·required.	16	step·is·usually·required.
17	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	17	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
18	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O	18	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O
19	··-i,·--in-file=(~~req~~uired,·in~~put~~);·string	19	··-i,·--in-file=(input,·required);·string
20	······input·perfusion·data·set	20	······input·perfusion·data·set
21	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·string	21	··-o,·--out-file=(required,·output);·string
22	······output·perfusion·data·set	22	······output·perfusion·data·set
23	··-r,·--registered=reg;·stringSTRING	23	··-r,·--registered=reg;·stringSTRING
24	······file·name·base·for·registered·files	24	······file·name·base·for·registered·files
25	P\x8Pr\x8re\x8ec\x8co\x8on\x8nd\x8di\x8it\x8ti\x8io\x8on\x8ns\x8s	25	P\x8Pr\x8re\x8ec\x8co\x8on\x8nd\x8di\x8it\x8ti\x8io\x8on\x8ns\x8s
26	··-s,·--skip=2;·ulong	26	··-s,·--skip=2;·ulong
27	······skip·images·at·beginning·of·series	27	······skip·images·at·beginning·of·series
28	··-P,·--passes=4;·ulong	28	··-P,·--passes=4;·ulong


Offset 4, 17 lines modified		Offset 4, 17 lines modified
4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8di\x8im\x8ma\x8ag\x8ge\x8ec\x8co\x8om\x8mb\x8bi\x8in\x8ne\x8e-\x8-d\x8di\x8ic\x8ce\x8e	4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8di\x8im\x8ma\x8ag\x8ge\x8ec\x8co\x8om\x8mb\x8bi\x8in\x8ne\x8e-\x8-d\x8di\x8ic\x8ce\x8e
5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:	5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:
6	mia-2dimagecombine-dice·{-1·i\x8io\x8o}·{-2·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]	6	mia-2dimagecombine-dice·{-1·i\x8io\x8o}·{-2·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	This·program·evaluate·the·dice·index·of·two·binary·masks·given·as·binary	8	This·program·evaluate·the·dice·index·of·two·binary·masks·given·as·binary
9	images.·The·result·is·written·to·stdout.	9	images.·The·result·is·written·to·stdout.
10	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	10	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
11	··-1,·--in-file-1=(~~req~~uired,·in~~put~~);·io	11	··-1,·--in-file-1=(input,·required);·io
12	······input·image·1.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	12	······input·image·1.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
13	··-2,·--in-file-2=(~~req~~uired,·in~~put~~);·io	13	··-2,·--in-file-2=(input,·required);·io
14	······input·image·2.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	14	······input·image·2.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
15	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o	15	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o
16	··-V,·--verbose=warning;·dict	16	··-V,·--verbose=warning;·dict
17	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.	17	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.
18	······Supported·priorities·starting·at·lowest·level·are:	18	······Supported·priorities·starting·at·lowest·level·are:
19	······trace:···Function·call·trace	19	······trace:···Function·call·trace
20	······debug:···Debug·output	20	······debug:···Debug·output


Offset 3, 21 lines modified		Offset 3, 21 lines modified
3	===============================================================================	3	===============================================================================
4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8di\x8im\x8ma\x8ag\x8ge\x8ec\x8co\x8om\x8mb\x8bi\x8in\x8ne\x8er\x8r	4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8di\x8im\x8ma\x8ag\x8ge\x8ec\x8co\x8om\x8mb\x8bi\x8in\x8ne\x8er\x8r
5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:	5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:
6	mia-2dimagecombiner·{-1·i\x8io\x8o}·{-2·i\x8io\x8o}·{-o·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]	6	mia-2dimagecombiner·{-1·i\x8io\x8o}·{-2·i\x8io\x8o}·{-o·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	Combine·two·image·by·a·given·operation.	8	Combine·two·image·by·a·given·operation.
9	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	9	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
10	··-1,·--in-file-1=(~~req~~uired,·in~~put~~);·io	10	··-1,·--in-file-1=(input,·required);·io
11	······first·input·image·to·be·combined.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n	11	······first·input·image·to·be·combined.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n
12	······_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	12	······_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
13	··-2,·--in-file-2=(~~req~~uired,·in~~put~~);·io	13	··-2,·--in-file-2=(input,·required);·io
14	······second·input·image·to·be·combined.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n	14	······second·input·image·to·be·combined.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n
15	······_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	15	······_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
16	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·io	16	··-o,·--out-file=(required,·output);·io
17	······output·image(s)·that·have·been·filtered.·For·supported·file·types·see	17	······output·image(s)·that·have·been·filtered.·For·supported·file·types·see
18	······_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	18	······_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
19	··-p,·--operation=absdiff;·factory	19	··-p,·--operation=absdiff;·factory
20	······operation·to·be·applied.·For·supported·plug-ins·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/	20	······operation·to·be·applied.·For·supported·plug-ins·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/
21	······_\x8c_\x8o_\x8m_\x8b_\x8i_\x8n_\x8e_\x8r	21	······_\x8c_\x8o_\x8m_\x8b_\x8i_\x8n_\x8e_\x8r
22	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o	22	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o
23	··-V,·--verbose=warning;·dict	23	··-V,·--verbose=warning;·dict


Offset 3, 15 lines modified		Offset 3, 15 lines modified
3	===============================================================================	3	===============================================================================
4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8di\x8im\x8ma\x8ag\x8ge\x8ec\x8cr\x8re\x8ea\x8at\x8to\x8or\x8r	4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8di\x8im\x8ma\x8ag\x8ge\x8ec\x8cr\x8re\x8ea\x8at\x8to\x8or\x8r
5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:	5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:
6	mia-2dimagecreator·{-o·i\x8io\x8o}·{-j·f\x8fa\x8ac\x8ct\x8to\x8or\x8ry\x8y}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]	6	mia-2dimagecreator·{-o·i\x8io\x8o}·{-j·f\x8fa\x8ac\x8ct\x8to\x8or\x8ry\x8y}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	This·program·is·used·to·create·test·images.	8	This·program·is·used·to·create·test·images.
9	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	9	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
10	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·io	10	··-o,·--out-file=(required,·output);·io
11	······output·file·for·create·object.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	11	······output·file·for·create·object.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
12	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	12	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
13	··-s,·--size=[128,128];·2dbounds	13	··-s,·--size=[128,128];·2dbounds
14	······size·of·the·object	14	······size·of·the·object
15	··-r,·--repn=ubyte;·dict	15	··-r,·--repn=ubyte;·dict
16	······input·pixel·type	16	······input·pixel·type
17	······bit:····binary·data	17	······bit:····binary·data


Offset 2, 8 lines modified		Offset 2, 8 lines modified
2	··········<em·class="replaceable"><code>options</code></em>	2	··········<em·class="replaceable"><code>options</code></em>
3	········...]·[	3	········...]·[
4	··········<em·class="replaceable"><code>	4	··········<em·class="replaceable"><code>
5	············<a·class="xref"·href="SecPlugintype2dimagefilter.html"·title="Plugin·type:·2dimage/filter">Plugin·type:·2dimage/filter</a>	5	············<a·class="xref"·href="SecPlugintype2dimagefilter.html"·title="Plugin·type:·2dimage/filter">Plugin·type:·2dimage/filter</a>
6	··········</code></em>	6	··········</code></em>
7	········...]</p></div><h4><a·name="idp1848"></a>Description:</h4><p·class="description">This·program·runs·a·series·filters·on·a·given·input·image.·The·filters·are·given·as·extra·parameters·on·the·command·line·and·Ware·run·in·the·order·in·which·they·are·given.·To·obtain·a·list·of·available·filters·you·may·run	7	········...]</p></div><h4><a·name="idp1848"></a>Description:</h4><p·class="description">This·program·runs·a·series·filters·on·a·given·input·image.·The·filters·are·given·as·extra·parameters·on·the·command·line·and·Ware·run·in·the·order·in·which·they·are·given.·To·obtain·a·list·of·available·filters·you·may·run
8	···'mia-plugin-help·filter/2dimage'	8	···'mia-plugin-help·filter/2dimage'
9	from·the·command·line</p><h4><a·name="idp1850"></a>Options:</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-file=(~~req~~uired,·in~~put~~);·io</span></dt><dd><p>input·image(s)·to·be·filtered.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd><dt><span·class="term">-o,·--out-file=[·...·truncated·by·diffoscope;·len:·17,·SHA:·ded25~~d093~~a26b~~89d~~589f84b274fc9~~253f5f~~2~~e06~~a~~64bf~~95c~~5c4~~8~~6d2~~921594d387·...·]);·io</span></dt><dd><p>output·image(s)·that·have·been·filtered.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd></dl></div><h4><a·name="idp1862"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp1913"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp1919"></a>Example:</h4><p>Run·a·kmeans·classification·of·5·classes·on·input.png·and·then·a·binarization·of·the·4th·class·and·store·the·result·in·result.png</p><pre·class="screen">mia-2dimagefilter·-i·input.png·-o·result.png·kmeans:c=5·binarize:min=4,max=4</pre><h4><a·name="idp1922"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="Secmia2dimagecreator.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dimagefilterstack.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">mia-2dimagecreator </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dimagefilterstack</td></tr></table></div></body></html>	9	from·the·command·line</p><h4><a·name="idp1850"></a>Options:</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-i,·--in-file=(input,·required);·io</span></dt><dd><p>input·image(s)·to·be·filtered.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd><dt><span·class="term">-o,·--out-file=[·...·truncated·by·diffoscope;·len:·17,·SHA:·ee245e6b7fa72b08f92b64fa978289b72ccaa5b939dc61b892b90b576209d332·...·]);·io</span></dt><dd><p>output·image(s)·that·have·been·filtered.·For·supported·file·types·see·<a·class="xref"·href="SecPlugintype2dimageio.html"·title="Plugin·type:·2dimage/io">Plugin·type:·2dimage/io</a></p></dd></dl></div><h4><a·name="idp1862"></a>Help·&·Info</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">-V,·--verbose=warning;·dict</span></dt><dd><p>verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.·Supported·priorities·starting·at·lowest·level·are:</p><div·class="informaltable"><table·class="informaltable"·border="0"><colgroup><col·class="c1"><col·class="c2"></colgroup><tbody><tr><td·align="left"·valign="top">trace:</td><td·align="left"·valign="top">Function·call·trace</td></tr><tr><td·align="left"·valign="top">debug:</td><td·align="left"·valign="top">Debug·output</td></tr><tr><td·align="left"·valign="top">info:</td><td·align="left"·valign="top">Low·level·messages</td></tr><tr><td·align="left"·valign="top">message:</td><td·align="left"·valign="top">Normal·messages</td></tr><tr><td·align="left"·valign="top">warning:</td><td·align="left"·valign="top">Warnings</td></tr><tr><td·align="left"·valign="top">fail:</td><td·align="left"·valign="top">Report·test·failures</td></tr><tr><td·align="left"·valign="top">error:</td><td·align="left"·valign="top">Report·errors</td></tr><tr><td·align="left"·valign="top">fatal:</td><td·align="left"·valign="top">Report·only·fatal·errors</td></tr></tbody></table></div></dd><dt><span·class="term">--copyright=();·bool</span></dt><dd><p>print·copyright·information</p></dd><dt><span·class="term">-h,·--help=();·bool</span></dt><dd><p>print·this·help</p></dd><dt><span·class="term">-?,·--usage=();·bool</span></dt><dd><p>print·a·short·help</p></dd><dt><span·class="term">--version=();·bool</span></dt><dd><p>print·the·version·number·and·exit</p></dd></dl></div><h4><a·name="idp1913"></a>Processing</h4><div·class="variablelist"><dl·class="variablelist·compact"><dt><span·class="term">--threads=-1;·int</span></dt><dd><p>Maxiumum·number·of·threads·to·use·for·processing,This·number·should·be·lower·or·equal·to·the·number·of·logical·processor·cores·in·the·machine.·(-1:·automatic·estimation).</p></dd></dl></div><h4><a·name="idp1919"></a>Example:</h4><p>Run·a·kmeans·classification·of·5·classes·on·input.png·and·then·a·binarization·of·the·4th·class·and·store·the·result·in·result.png</p><pre·class="screen">mia-2dimagefilter·-i·input.png·-o·result.png·kmeans:c=5·binarize:min=4,max=4</pre><h4><a·name="idp1922"></a>Author(s):</h4><p>Gert·Wollny</p></div><div·class="navfooter"><hr><table·width="100%"·summary="Navigation·footer"><tr><td·width="40%"·align="left"><a·accesskey="p"·href="Secmia2dimagecreator.html">Prev</a> </td><td·width="20%"·align="center"><a·accesskey="u"·href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html">Up</a></td><td·width="40%"·align="right"> <a·accesskey="n"·href="Secmia2dimagefilterstack.html">Next</a></td></tr><tr><td·width="40%"·align="left"·valign="top">mia-2dimagecreator </td><td·width="20%"·align="center"><a·accesskey="h"·href="index.html">Home</a></td><td·width="40%"·align="right"·valign="top"> mia-2dimagefilterstack</td></tr></table></div></body></html>


Offset 7, 18 lines modified		Offset 7, 18 lines modified
7	...]	7	...]
8	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	8	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
9	This·program·runs·a·series·filters·on·a·given·input·image.·The·filters·are	9	This·program·runs·a·series·filters·on·a·given·input·image.·The·filters·are
10	given·as·extra·parameters·on·the·command·line·and·Ware·run·in·the·order·in	10	given·as·extra·parameters·on·the·command·line·and·Ware·run·in·the·order·in
11	which·they·are·given.·To·obtain·a·list·of·available·filters·you·may·run·'mia-	11	which·they·are·given.·To·obtain·a·list·of·available·filters·you·may·run·'mia-
12	plugin-help·filter/2dimage'·from·the·command·line	12	plugin-help·filter/2dimage'·from·the·command·line
13	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	13	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
14	··-i,·--in-file=(~~req~~uired,·in~~put~~);·io	14	··-i,·--in-file=(input,·required);·io
15	······input·image(s)·to·be·filtered.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	15	······input·image(s)·to·be·filtered.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
16	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	16	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
17	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·io	17	··-o,·--out-file=(required,·output);·io
18	······output·image(s)·that·have·been·filtered.·For·supported·file·types·see	18	······output·image(s)·that·have·been·filtered.·For·supported·file·types·see
19	······_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	19	······_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
20	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o	20	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o
21	··-V,·--verbose=warning;·dict	21	··-V,·--verbose=warning;·dict
22	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.	22	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.
23	······Supported·priorities·starting·at·lowest·level·are:	23	······Supported·priorities·starting·at·lowest·level·are:
24	······trace:···Function·call·trace	24	······trace:···Function·call·trace


Offset 4, 15 lines modified		Offset 4, 15 lines modified
4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8di\x8im\x8ma\x8ag\x8ge\x8ef\x8fu\x8ul\x8ll\x8ls\x8st\x8ta\x8at\x8ts\x8s	4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8di\x8im\x8ma\x8ag\x8ge\x8ef\x8fu\x8ul\x8ll\x8ls\x8st\x8ta\x8at\x8ts\x8s
5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:	5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:
6	mia-2dimagefullstats·{-i·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]	6	mia-2dimagefullstats·{-i·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	This·progranm·is·used·to·evaluate·some·statistics·of·an·image.·Output·is·Mean,	8	This·progranm·is·used·to·evaluate·some·statistics·of·an·image.·Output·is·Mean,
9	Variation,·Median,·Min·and·Max·of·the·intensity·values.	9	Variation,·Median,·Min·and·Max·of·the·intensity·values.
10	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	10	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
11	··-i,·--in-file=(~~req~~uired,·in~~put~~);·io	11	··-i,·--in-file=(input,·required);·io
12	······input·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	12	······input·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
13	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o	13	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o
14	··-V,·--verbose=warning;·dict	14	··-V,·--verbose=warning;·dict
15	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.	15	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.
16	······Supported·priorities·starting·at·lowest·level·are:	16	······Supported·priorities·starting·at·lowest·level·are:
17	······trace:···Function·call·trace	17	······trace:···Function·call·trace
18	······debug:···Debug·output	18	······debug:···Debug·output


Offset 7, 24 lines modified		Offset 7, 24 lines modified
7	_\x82\x82_\x8d\x8d_\x8i\x8i_\x8m\x8m_\x8a\x8a_\x8g\x8g_\x8e\x8e_\x8/\x8/_\x8f\x8f_\x8u\x8u_\x8l\x8l_\x8l\x8l_\x8c\x8c_\x8o\x8o_\x8s\x8s_\x8t\x8t·...]	7	_\x82\x82_\x8d\x8d_\x8i\x8i_\x8m\x8m_\x8a\x8a_\x8g\x8g_\x8e\x8e_\x8/\x8/_\x8f\x8f_\x8u\x8u_\x8l\x8l_\x8l\x8l_\x8c\x8c_\x8o\x8o_\x8s\x8s_\x8t\x8t·...]
8	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	8	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
9	This·program·runs·registration·of·two·images·optimizing·a·transformation·of·the	9	This·program·runs·registration·of·two·images·optimizing·a·transformation·of·the
10	given·transformation·model·by·optimizing·certain·cost·measures·that·are·given	10	given·transformation·model·by·optimizing·certain·cost·measures·that·are·given
11	as·free·parameters.	11	as·free·parameters.
12	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	12	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
13	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O	13	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O
14	··-i,·--in-image=(~~req~~uired,·in~~put~~);·io	14	··-i,·--in-image=(input,·required);·io
15	······test·image·to·be·registered.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	15	······test·image·to·be·registered.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
16	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	16	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
17	··-r,·--ref-image=(~~req~~uired,·in~~put~~);·io	17	··-r,·--ref-image=(input,·required);·io
18	······reference·image·to·be·registered·to.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n	18	······reference·image·to·be·registered·to.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n
19	······_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	19	······_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
20	··-o,·--out-image=(output);·io	20	··-o,·--out-image=(output);·io
21	······registered·output·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	21	······registered·output·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
22	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	22	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
23	··-t,·--transformation=(ou~~tput~~,·requ~~ired~~);·io	23	··-t,·--transformation=(required,·output);·io
24	······output·transformation·comprising·the·registration.·For·supported·file	24	······output·transformation·comprising·the·registration.·For·supported·file
25	······types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8t_\x8r_\x8a_\x8n_\x8s_\x8f_\x8o_\x8r_\x8m_\x8/_\x8i_\x8o	25	······types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8t_\x8r_\x8a_\x8n_\x8s_\x8f_\x8o_\x8r_\x8m_\x8/_\x8i_\x8o
26	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o	26	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o
27	··-V,·--verbose=warning;·dict	27	··-V,·--verbose=warning;·dict
28	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.	28	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.
29	······Supported·priorities·starting·at·lowest·level·are:	29	······Supported·priorities·starting·at·lowest·level·are:
30	······trace:···Function·call·trace	30	······trace:···Function·call·trace


Offset 3, 17 lines modified		Offset 3, 17 lines modified
3	===============================================================================	3	===============================================================================
4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8di\x8im\x8ma\x8ag\x8ge\x8es\x8se\x8el\x8le\x8ec\x8ct\x8t	4	m\x8mi\x8ia\x8a-\x8-2\x82d\x8di\x8im\x8ma\x8ag\x8ge\x8es\x8se\x8el\x8le\x8ec\x8ct\x8t
5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:	5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:
6	mia-2dimageselect·{-i·i\x8io\x8o}·{-o·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]	6	mia-2dimageselect·{-i·i\x8io\x8o}·{-o·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	This·program·is·used·to·select·one·2D·images·from·a·multi-image·file.	8	This·program·is·used·to·select·one·2D·images·from·a·multi-image·file.
9	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	9	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
10	··-i,·--in-file=(~~req~~uired,·in~~put~~);·io	10	··-i,·--in-file=(input,·required);·io
11	······input·images.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	11	······input·images.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
12	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·io	12	··-o,·--out-file=(required,·output);·io
13	······output·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	13	······output·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
14	··-n,·--number=0;·ulong	14	··-n,·--number=0;·ulong
15	······image·number·to·be·selected	15	······image·number·to·be·selected
16	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o	16	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o
17	··-V,·--verbose=warning;·dict	17	··-V,·--verbose=warning;·dict
18	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.	18	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.
19	······Supported·priorities·starting·at·lowest·level·are:	19	······Supported·priorities·starting·at·lowest·level·are:


Offset 6, 18 lines modified		Offset 6, 18 lines modified
6	mia-2dimagestack-cmeans·{-i·i\x8io\x8o}·{-o·s\x8st\x8tr\x8ri\x8in\x8ng\x8g}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]	6	mia-2dimagestack-cmeans·{-i·i\x8io\x8o}·{-o·s\x8st\x8tr\x8ri\x8in\x8ng\x8g}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	This·program·first·evaluates·a·sparse·histogram·of·an·input·image·series,·then	8	This·program·first·evaluates·a·sparse·histogram·of·an·input·image·series,·then
9	runs·a·c-means·classification·over·the·histogram·and·then·writes·the	9	runs·a·c-means·classification·over·the·histogram·and·then·writes·the
10	probability·mapping·for·thr·original·intensity·values	10	probability·mapping·for·thr·original·intensity·values
11	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	11	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
12	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O	12	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O
13	··-i,·--in-file=(~~req~~uired,·in~~put~~);·io	13	··-i,·--in-file=(input,·required);·io
14	······input·image(s)·to·be·filtered.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	14	······input·image(s)·to·be·filtered.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
15	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	15	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
16	··-o,·--out-probmap=(ou~~tput~~,·requ~~ired~~);·string	16	··-o,·--out-probmap=(required,·output);·string
17	······Save·probability·map·to·this·file	17	······Save·probability·map·to·this·file
18	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o	18	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o
19	··-V,·--verbose=warning;·dict	19	··-V,·--verbose=warning;·dict
20	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.	20	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.
21	······Supported·priorities·starting·at·lowest·level·are:	21	······Supported·priorities·starting·at·lowest·level·are:
22	······trace:···Function·call·trace	22	······trace:···Function·call·trace
23	······debug:···Debug·output	23	······debug:···Debug·output


Offset 6, 15 lines modified		Offset 6, 15 lines modified
6	mia-2dimagestats·{-i·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]	6	mia-2dimagestats·{-i·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	This·progranm·is·used·to·evaluate·some·statistics·of·an·image.·Output·is·Mean,	8	This·progranm·is·used·to·evaluate·some·statistics·of·an·image.·Output·is·Mean,
9	Variation,·Median,·and·Median·Average·Distance·of·the·intensity·values.·The	9	Variation,·Median,·and·Median·Average·Distance·of·the·intensity·values.·The
10	program·allows·one·to·set·a·lower·threshold·and·to·cut·off·a·percentage·of·the	10	program·allows·one·to·set·a·lower·threshold·and·to·cut·off·a·percentage·of·the
11	high·intensity·pixels	11	high·intensity·pixels
12	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	12	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
13	··-i,·--in-file=(~~req~~uired,·in~~put~~);·io	13	··-i,·--in-file=(input,·required);·io
14	······input·image·to·be·analyzed.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	14	······input·image·to·be·analyzed.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
15	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	15	······_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
16	··-t,·--thresh=10;·float	16	··-t,·--thresh=10;·float
17	······intensity·thresh·to·ignore	17	······intensity·thresh·to·ignore
18	··-g,·--high-thresh=0.05;·float	18	··-g,·--high-thresh=0.05;·float
19	······upper·histogram·percentage·to·ignore	19	······upper·histogram·percentage·to·ignore
20	··--use-histogram	20	··--use-histogram


Offset 6, 17 lines modified		Offset 6, 17 lines modified
6	mia-2dmany2one-nonrigid·{-i·s\x8st\x8tr\x8ri\x8in\x8ng\x8g}·{-o·s\x8st\x8tr\x8ri\x8in\x8ng\x8g}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]·[·_\x8P\x8P_\x8l\x8l_\x8u\x8u_\x8g\x8g_\x8i\x8i_\x8n\x8n_\x8·_\x8t\x8t_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8:\x8:	6	mia-2dmany2one-nonrigid·{-i·s\x8st\x8tr\x8ri\x8in\x8ng\x8g}·{-o·s\x8st\x8tr\x8ri\x8in\x8ng\x8g}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]·[·_\x8P\x8P_\x8l\x8l_\x8u\x8u_\x8g\x8g_\x8i\x8i_\x8n\x8n_\x8·_\x8t\x8t_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8:\x8:
7	_\x82\x82_\x8d\x8d_\x8i\x8i_\x8m\x8m_\x8a\x8a_\x8g\x8g_\x8e\x8e_\x8/\x8/_\x8f\x8f_\x8u\x8u_\x8l\x8l_\x8l\x8l_\x8c\x8c_\x8o\x8o_\x8s\x8s_\x8t\x8t·...]	7	_\x82\x82_\x8d\x8d_\x8i\x8i_\x8m\x8m_\x8a\x8a_\x8g\x8g_\x8e\x8e_\x8/\x8/_\x8f\x8f_\x8u\x8u_\x8l\x8l_\x8l\x8l_\x8c\x8c_\x8o\x8o_\x8s\x8s_\x8t\x8t·...]
8	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	8	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
9	This·program·registers·all·images·of·a·conscutively·numbered·set·of·images·to	9	This·program·registers·all·images·of·a·conscutively·numbered·set·of·images·to
10	one·common·user·defined·reference.	10	one·common·user·defined·reference.
11	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	11	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
12	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O	12	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O
13	··-i,·--in-file=(~~req~~uired,·in~~put~~);·string	13	··-i,·--in-file=(input,·required);·string
14	······input·perfusion·data·set	14	······input·perfusion·data·set
15	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·string	15	··-o,·--out-file=(required,·output);·string
16	······file·name·for·registered·images,·numbering·and·pattern·are·deducted·from	16	······file·name·for·registered·images,·numbering·and·pattern·are·deducted·from
17	······the·input·data	17	······the·input·data
18	R\x8Re\x8eg\x8gi\x8is\x8st\x8tr\x8ra\x8at\x8ti\x8io\x8on\x8n	18	R\x8Re\x8eg\x8gi\x8is\x8st\x8tr\x8ra\x8at\x8ti\x8io\x8on\x8n
19	··-O,·--optimizer=gsl:opt=gd,step=0.1;·stringSTRING	19	··-O,·--optimizer=gsl:opt=gd,step=0.1;·stringSTRING
20	······Optimizer·used·for·minimization	20	······Optimizer·used·for·minimization
21	··-l,·--mg-levels=3;·ulong	21	··-l,·--mg-levels=3;·ulong
22	······multi-resolution·levels	22	······multi-resolution·levels


Offset 5, 15 lines modified		Offset 5, 15 lines modified
5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:	5	S\x8Sy\x8ys\x8sn\x8no\x8op\x8pi\x8is\x8s:\x8:
6	mia-2dmulti-force·{-o·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]·[·_\x8P\x8P_\x8l\x8l_\x8u\x8u_\x8g\x8g_\x8i\x8i_\x8n\x8n_\x8·_\x8t\x8t_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8:\x8:_\x8·_\x82\x82_\x8d\x8d_\x8i\x8i_\x8m\x8m_\x8a\x8a_\x8g\x8g_\x8e\x8e_\x8/\x8/_\x8f\x8f_\x8u\x8u_\x8l\x8l_\x8l\x8l_\x8c\x8c_\x8o\x8o_\x8s\x8s_\x8t\x8t·...]	6	mia-2dmulti-force·{-o·i\x8io\x8o}·[·o\x8op\x8pt\x8ti\x8io\x8on\x8ns\x8s·...]·[·_\x8P\x8P_\x8l\x8l_\x8u\x8u_\x8g\x8g_\x8i\x8i_\x8n\x8n_\x8·_\x8t\x8t_\x8y\x8y_\x8p\x8p_\x8e\x8e_\x8:\x8:_\x8·_\x82\x82_\x8d\x8d_\x8i\x8i_\x8m\x8m_\x8a\x8a_\x8g\x8g_\x8e\x8e_\x8/\x8/_\x8f\x8f_\x8u\x8u_\x8l\x8l_\x8l\x8l_\x8c\x8c_\x8o\x8o_\x8s\x8s_\x8t\x8t·...]
7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:	7	D\x8De\x8es\x8sc\x8cr\x8ri\x8ip\x8pt\x8ti\x8io\x8on\x8n:\x8:
8	This·program·evaluates·the·2D·image·cost·force·norm·image·of·a·given·cost	8	This·program·evaluates·the·2D·image·cost·force·norm·image·of·a·given·cost
9	function·set.·The·input·images·must·be·of·the·same·dimensions·and·gray·scale	9	function·set.·The·input·images·must·be·of·the·same·dimensions·and·gray·scale
10	(whatever·bit-depth).	10	(whatever·bit-depth).
11	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	11	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
12	··-o,·--out-file=(ou~~tput~~,·requ~~ired~~);·io	12	··-o,·--out-file=(required,·output);·io
13	······output·norm·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o	13	······output·norm·image.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:_\x8·_\x82_\x8d_\x8i_\x8m_\x8a_\x8g_\x8e_\x8/_\x8i_\x8o
14	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o	14	H\x8He\x8el\x8lp\x8p·&\x8&·I\x8In\x8nf\x8fo\x8o
15	··-V,·--verbose=warning;·dict	15	··-V,·--verbose=warning;·dict
16	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.	16	······verbosity·of·output,·print·messages·of·given·level·and·higher·priorities.
17	······Supported·priorities·starting·at·lowest·level·are:	17	······Supported·priorities·starting·at·lowest·level·are:
18	······trace:···Function·call·trace	18	······trace:···Function·call·trace
19	······debug:···Debug·output	19	······debug:···Debug·output


Offset 10, 15 lines modified		Offset 10, 15 lines modified
10	a·given·transformation·model.·Other·than·mia-2dnonrigidreg·it·doesn't·support	10	a·given·transformation·model.·Other·than·mia-2dnonrigidreg·it·doesn't·support
11	specific·command·line·parameters·to·provide·the·images.·Instead·the·images·are	11	specific·command·line·parameters·to·provide·the·images.·Instead·the·images·are
12	specified·dirctly·when·defining·the·cost·function.·Hence,·image·registrations	12	specified·dirctly·when·defining·the·cost·function.·Hence,·image·registrations
13	can·be·executed·that·optimize·the·aligmnet·of·more·than·one·image·pair·at·the	13	can·be·executed·that·optimize·the·aligmnet·of·more·than·one·image·pair·at·the
14	same·time.·Note,·however,·that·all·input·images·must·be·of·the·same·dimension	14	same·time.·Note,·however,·that·all·input·images·must·be·of·the·same·dimension
15	(in·pixels)	15	(in·pixels)
16	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	16	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
17	··-o,·--out-transform=(ou~~tput~~,·requ~~ired~~);·io	17	··-o,·--out-transform=(required,·output);·io
18	······output·transformation.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	18	······output·transformation.·For·supported·file·types·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
19	······_\x82_\x8d_\x8t_\x8r_\x8a_\x8n_\x8s_\x8f_\x8o_\x8r_\x8m_\x8/_\x8i_\x8o	19	······_\x82_\x8d_\x8t_\x8r_\x8a_\x8n_\x8s_\x8f_\x8o_\x8r_\x8m_\x8/_\x8i_\x8o
20	··-l,·--levels=3;·ulong	20	··-l,·--levels=3;·ulong
21	······multi-resolution·levels	21	······multi-resolution·levels
22	··-O,·--optimizer=gsl:opt=gd,step=0.1;·factory	22	··-O,·--optimizer=gsl:opt=gd,step=0.1;·factory
23	······Optimizer·used·for·minimization.·For·supported·plug-ins·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:	23	······Optimizer·used·for·minimization.·For·supported·plug-ins·see·_\x8P_\x8l_\x8u_\x8g_\x8i_\x8n_\x8·_\x8t_\x8y_\x8p_\x8e_\x8:
24	······_\x8m_\x8i_\x8n_\x8i_\x8m_\x8i_\x8z_\x8e_\x8r_\x8/_\x8s_\x8i_\x8n_\x8g_\x8l_\x8e_\x8c_\x8o_\x8s_\x8t	24	······_\x8m_\x8i_\x8n_\x8i_\x8m_\x8i_\x8z_\x8e_\x8r_\x8/_\x8s_\x8i_\x8n_\x8g_\x8l_\x8e_\x8c_\x8o_\x8s_\x8t


Offset 8, 15 lines modified		Offset 8, 15 lines modified
8	This·program·is·used·to·run·a·ICA·on·a·series·of·myocardial·perfusion·images	8	This·program·is·used·to·run·a·ICA·on·a·series·of·myocardial·perfusion·images
9	given·in·a·segmentation·set·in·order·to·create·sythetic·references·that·can·be	9	given·in·a·segmentation·set·in·order·to·create·sythetic·references·that·can·be
10	used·for·motion·correction·by·image·registration.·If·the·aim·is·to·run·a·full	10	used·for·motion·correction·by·image·registration.·If·the·aim·is·to·run·a·full
11	motion·compensation·then·it·is·better·run·mia-2dmyoica-nonrigid,·since·this	11	motion·compensation·then·it·is·better·run·mia-2dmyoica-nonrigid,·since·this
12	program·is·essentially·the·same·without·the·registration·bits.	12	program·is·essentially·the·same·without·the·registration·bits.
13	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:	13	O\x8Op\x8pt\x8ti\x8io\x8on\x8ns\x8s:\x8:
14	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O	14	F\x8Fi\x8il\x8le\x8e-\x8-I\x8IO\x8O
15	··-i,·--in-file=(~~req~~uired,·in~~put~~);·string	15	··-i,·--in-file=(input,·required);·string
16	······input·perfusion·data·set	16	······input·perfusion·data·set
17	··-r,·--references=(output);·string	17	··-r,·--references=(output);·string
18	······File·name·base·for·the·reference·images.·Image·type·and·numbering·scheme	18	······File·name·base·for·the·reference·images.·Image·type·and·numbering·scheme
19	······are·taken·from·the·input·images.	19	······are·taken·from·the·input·images.
20	··-c,·--save-cropped=(output);·string	20	··-c,·--save-cropped=(output);·string
21	······save·cropped·set·of·the·original·set·to·this·file,·the·image·files·will	21	······save·cropped·set·of·the·original·set·to·this·file,·the·image·files·will
22	······use·the·stem·of·the·name·as·file·name·base	22	······use·the·stem·of·the·name·as·file·name·base